BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024516
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 126 MWRVG-PRPSNTRFQELNSEPVIPDGFPEWKE-------TMDSWGHKMISAIEVVAEMAA 177
W G P RF+ ++ V P P +K ++D G K++ AI A
Sbjct: 98 FWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAI-------A 150
Query: 178 IGFGLPKDAFTSLMKQGPHLLAPTGCDLRRYG---KEGT-VFAGYHYDLNFLTIHGRSRF 233
L +D F ++ G +L L Y K+ T V AG H D+N +T+ +
Sbjct: 151 TYLKLERDFFKPTVQDGNSVLR-----LLHYPPIPKDATGVRAGAHGDINTITLLLGAEE 205
Query: 234 PGLNIWLRNGKKVEVKVPVGCLLIQTGKQV 263
GL + R+G+ + + P GCL+I G +
Sbjct: 206 GGLEVLDRDGQWLPINPPPGCLVINIGDXL 235
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 212 GTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGCLLIQTGKQV 263
G + A H D+N +T+ + PGL + ++G ++V G ++I G +
Sbjct: 167 GAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXL 218
>pdb|3HR6|A Chain A, Structure Of The Corynebacterium Diphtheriae Major Pilin
Spaa Points To A Modular Pilus Assembly Stabilizing
Isopeptide Bonds
Length = 436
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 108 PKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPD--GFPEWKETMDSWGHKM 165
P +QP +G + K+R ++ SNT+F+ +P G P+ + + G K
Sbjct: 154 PDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVADKLPAELGKPDTNKITVTLGGKP 213
Query: 166 ISAIEVVAEMAAIG 179
I++ +V + +G
Sbjct: 214 INSTDVSVQTYQVG 227
>pdb|3HTL|X Chain X, Structure Of The Corynebacterium Diphtheriae Major Pilin
Spaa Points To A Modular Pilus Assembly With Stabilizing
Isopeptide Bonds
Length = 436
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 108 PKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNSEPVIPD--GFPEWKETMDSWGHKM 165
P +QP +G + K+R ++ SNT+F+ +P G P+ + + G K
Sbjct: 154 PDATQPGFSVGENVKYRVATKIPEIASNTKFEGFTVADKLPAELGKPDTNKITVTLGGKP 213
Query: 166 ISAIEVVAEMAAIG 179
I++ +V + +G
Sbjct: 214 INSTDVSVQTYQVG 227
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 115 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 169
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 170 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 207
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 115 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 169
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 170 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 207
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMMEKY-FESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M E P HF++ ++E +H+
Sbjct: 116 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 170
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 171 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 208
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 115 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 169
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 170 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 207
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMMEKY-FESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M E P HF++ ++E +H+
Sbjct: 115 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 169
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 170 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 207
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 30 VSGILRETGALLVKDPRCTVEDNDRFLDMM-EKYFESP-FHFKR----LQERPNLHYQVG 83
V G ++TG +PR + RF+ M + E P HF++ ++E +H+
Sbjct: 116 VEGFAKKTG-----NPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTD 170
Query: 84 VTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRV 129
+T + ++ E+ EKF+A+ KE+ +PK + M V
Sbjct: 171 LTADDLK--------ELAEKFKAVYKEAMNGEEFPQEPKDQLMGAV 208
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 26 LCREVSGILRETGALLVKDPRCTVEDNDRFLDMMEKY-----FESPFHFKRLQERPNLHY 80
+ E++ ILR G L +K+P T DN+ + K K LQ P
Sbjct: 86 ILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREP---- 141
Query: 81 QVGVTPEGVEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDP 121
+TPE V+ R + E +P+ +G P
Sbjct: 142 ---LTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSGP 179
>pdb|3ZNU|A Chain A, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|B Chain B, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|C Chain C, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|D Chain D, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|E Chain E, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|F Chain F, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|G Chain G, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|H Chain H, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|I Chain I, Crystal Structure Of Clcf In Crystal Form 2
pdb|3ZNU|J Chain J, Crystal Structure Of Clcf In Crystal Form 2
Length = 94
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 89 VEIPRSLVDEEMQEKFRAMPKESQPSIPIGPDPKWRYMWRVGPRPSNTRFQELNS 143
V +PR+L D +E+ +A E S + +WRY+WR + N ++NS
Sbjct: 9 VNLPRNL-DPREEERLKA--SEKARSRTLQEQGQWRYLWRTTGKYGNISVFDVNS 60
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 66 PFHFKRLQERPN-LHYQVGVTPEGVEIPRSLVDEEM----QEKFRAMPKESQPSIPIGPD 120
P H L + P+ +H + VT +G I +S +E + ++F A E + PI P
Sbjct: 651 PTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPR 710
Query: 121 PKWRYM 126
P+WR +
Sbjct: 711 PEWREL 716
>pdb|3OC5|A Chain A, Crystal Structure Of The Vibrio Cholerae Secreted
Colonization Factor Tcpf
Length = 318
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 195 PHLLAPTGCDLRRYGKEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGKKVEVKVPVGC 254
PH+ G L R G + A YD+N L+ HG + N+W V+ KV VG
Sbjct: 189 PHIKVYEGT-LSRLKPGGAMIAVLEYDVNELSKHGYT-----NLW-----DVQFKVLVGV 237
Query: 255 LLIQTGKQVNP 265
+TG +P
Sbjct: 238 PHAETGVIYDP 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,624,303
Number of Sequences: 62578
Number of extensions: 382891
Number of successful extensions: 954
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 17
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)