BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024518
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 118/251 (47%), Gaps = 52/251 (20%)
Query: 16 CDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAV----VFECGPKCGCGP 71
C C +C +S +C C +L+ + +DG L E + +FEC C C
Sbjct: 64 CTCVDDC-SSSNCLCGQLSIR-------CWYDKDGRLLQEFNKIEPPLIFECNQACSCWR 115
Query: 72 DCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNEN 131
+C NR Q G+K RL++YRT K GW VR+ IP G +CEY+G L D + ++
Sbjct: 116 NCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGEL--ISDAEADVREDD 173
Query: 132 NFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARF 191
+++FD+D D +V YCIDA GN++RF
Sbjct: 174 SYLFDLD----------------------------NKDGEV-----YCIDARYYGNISRF 200
Query: 192 INHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQ 251
INH C+PN+ V H DL+ R+ F++ +I +EL +DYG D K K
Sbjct: 201 INHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRF-----WDIKSKY 255
Query: 252 MVCYCGAEGCR 262
C CG+E C+
Sbjct: 256 FTCQCGSEKCK 266
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 118/251 (47%), Gaps = 52/251 (20%)
Query: 16 CDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAV----VFECGPKCGCGP 71
C C +C +S +C C +L+ + +DG L E + +FEC C C
Sbjct: 62 CTCVDDC-SSSNCLCGQLSIR-------CWYDKDGRLLQEFNKIEPPLIFECNQACSCWR 113
Query: 72 DCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNEN 131
+C NR Q G+K RL++YRT K GW VR+ IP G +CEY+G L D + ++
Sbjct: 114 NCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGEL--ISDAEADVREDD 171
Query: 132 NFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARF 191
+++FD+D D +V YCIDA GN++RF
Sbjct: 172 SYLFDLD----------------------------NKDGEV-----YCIDARYYGNISRF 198
Query: 192 INHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQ 251
INH C+PN+ V H DL+ R+ F++ +I +EL +DYG D K K
Sbjct: 199 INHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRF-----WDIKSKY 253
Query: 252 MVCYCGAEGCR 262
C CG+E C+
Sbjct: 254 FTCQCGSEKCK 264
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 115/251 (45%), Gaps = 52/251 (20%)
Query: 16 CDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVE----AKAVVFECGPKCGCGP 71
C C +C +S +C C +L+ + +DG L E ++FEC C C
Sbjct: 83 CVCIDDC-SSSNCMCGQLSMR-------CWYDKDGRLLPEFNMAEPPLIFECNHACSCWR 134
Query: 72 DCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNEN 131
+C NR Q GL+ RL++YRT GW VRS IP G VCEY+G L D + E+
Sbjct: 135 NCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGEL--ISDSEADVREED 192
Query: 132 NFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARF 191
+++FD+D D +V YCIDA GNV+RF
Sbjct: 193 SYLFDLD----------------------------NKDGEV-----YCIDARFYGNVSRF 219
Query: 192 INHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQ 251
INH CEPNL V +H DL+ R+ F+ I ++L +DYG + G K
Sbjct: 220 INHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG-----KL 274
Query: 252 MVCYCGAEGCR 262
C CG+ CR
Sbjct: 275 FSCRCGSPKCR 285
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 115/251 (45%), Gaps = 52/251 (20%)
Query: 16 CDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVE----AKAVVFECGPKCGCGP 71
C C +C +S +C C +L+ + +DG L E ++FEC C C
Sbjct: 81 CVCIDDC-SSSNCMCGQLSMR-------CWYDKDGRLLPEFNMAEPPLIFECNHACSCWR 132
Query: 72 DCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNEN 131
+C NR Q GL+ RL++YRT GW VRS IP G VCEY+G L D + E+
Sbjct: 133 NCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGEL--ISDSEADVREED 190
Query: 132 NFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARF 191
+++FD+D D +V YCIDA GNV+RF
Sbjct: 191 SYLFDLD----------------------------NKDGEV-----YCIDARFYGNVSRF 217
Query: 192 INHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQ 251
INH CEPNL V +H DL+ R+ F+ I ++L +DYG + G K
Sbjct: 218 INHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG-----KL 272
Query: 252 MVCYCGAEGCR 262
C CG+ CR
Sbjct: 273 FSCRCGSPKCR 283
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 115/251 (45%), Gaps = 52/251 (20%)
Query: 16 CDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKA----VVFECGPKCGCGP 71
C C +C +S +C C +L+ + +DG L E ++FEC C C
Sbjct: 57 CVCIDDC-SSSNCMCGQLSMR-------CWYDKDGRLLPEFNMAEPPLIFECNHACSCWR 108
Query: 72 DCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNEN 131
+C NR Q GL+ RL++YRT GW VRS IP G VCEY+G L D + E+
Sbjct: 109 NCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGEL--ISDSEADVREED 166
Query: 132 NFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARF 191
+++FD+D D +V YCIDA GNV+RF
Sbjct: 167 SYLFDLD----------------------------NKDGEV-----YCIDARFYGNVSRF 193
Query: 192 INHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQ 251
INH CEPNL V +H DL+ R+ F+ I ++L +DYG + G K
Sbjct: 194 INHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKG-----KL 248
Query: 252 MVCYCGAEGCR 262
C CG+ CR
Sbjct: 249 FSCRCGSPKCR 259
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 114/251 (45%), Gaps = 52/251 (20%)
Query: 16 CDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVE----AKAVVFECGPKCGCGP 71
C C +C +S +C C +L+ + +DG L E ++FEC C C
Sbjct: 82 CVCIDDC-SSSNCMCGQLSMR-------CWYDKDGRLLPEFNMAEPPLIFECNHACSCWR 133
Query: 72 DCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNEN 131
+C NR Q GL+ RL++YRT GW VRS IP G VCEY+G L D + E+
Sbjct: 134 NCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGEL--ISDSEADVREED 191
Query: 132 NFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARF 191
+++FD+D D +V YCIDA GNV+RF
Sbjct: 192 SYLFDLD----------------------------NKDGEV-----YCIDARFYGNVSRF 218
Query: 192 INHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQ 251
INH CEPNL V +H DL+ R+ F+ I ++L +D G + G K
Sbjct: 219 INHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDAGERFWDIKG-----KL 273
Query: 252 MVCYCGAEGCR 262
C CG+ CR
Sbjct: 274 FSCRCGSPKCR 284
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 41/267 (15%)
Query: 10 PTTAIGCDCR--GNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRL-VEAKAVVFECGPK 66
P GC+C G C ++ C L+ D + + + GR+ + AV++EC
Sbjct: 63 PNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPTH---FAYDAQGRVRADTGAVIYECNSF 119
Query: 67 CGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNA 126
C C +C NR QRG LE+++T +KGW VRS F PAG + Y+G + + + A
Sbjct: 120 CSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAE---A 176
Query: 127 CDNENNFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDAGAVG 186
+ N+ D I+ +++ D DD +Y +DA G
Sbjct: 177 AKRDKNY--------------------DDDGITYLFDLDMFDD-----ASEYTVDAQNYG 211
Query: 187 NVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELD-----S 241
+V+RF NHSC PN+ + + +H + + FA +I PL+ELT+DY D S
Sbjct: 212 DVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQS 271
Query: 242 VHGPDGKVKQM--VCYCGAEGCRGRLF 266
++ ++ C CG+ CRG LF
Sbjct: 272 QKSQQNRISKLRRQCKCGSANCRGWLF 298
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 107/218 (49%), Gaps = 46/218 (21%)
Query: 60 VFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPK-KGWAVRSWDFIPAGAPVCEYIGVLR 118
++EC +C CGPDC NR Q+G +Y L ++RT +GW V++ I + V EY+G +
Sbjct: 116 IYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVI 175
Query: 119 RTEDLDNACDNENN----FIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVEN 174
+E+ + +N ++FD+D Y SD
Sbjct: 176 TSEEAERRGQFYDNKGITYLFDLD-----------------------YESD--------- 203
Query: 175 TPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYD 234
++ +DA GNV+ F+NHSC+PNL V V + D +L R+ LF+ I +ELT+D
Sbjct: 204 --EFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFD 261
Query: 235 YGYE------LDSV-HGPDGKVKQMVCYCGAEGCRGRL 265
Y + DS+ H P K + VC CGA CRG L
Sbjct: 262 YQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYL 299
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 128/277 (46%), Gaps = 51/277 (18%)
Query: 3 VAKGVKLPTTAI---GCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAV 59
V G + T I GC C CSC + ++YD RD G +
Sbjct: 46 VGPGADIDPTQITFPGCICVKTPCLPGTCSCLR----HGENYDDNSCLRDIGSGGKYAEP 101
Query: 60 VFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIG-VLR 118
VFEC C C C NR Q+GL++ +V++T KKGW +R+ +FIP G VCEY G VL
Sbjct: 102 VFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLG 161
Query: 119 RTE---DLDNACDNENNFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENT 175
+E + +++N+I I +YN Q +E
Sbjct: 162 FSEVQRRIHLQTKSDSNYIIAIR--------------------EHVYNG-----QVMETF 196
Query: 176 PDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDY 235
+D +GN+ RF+NHSCEPNL ++ D + ++ LFAA +I P +EL+YDY
Sbjct: 197 ----VDPTYIGNIGRFLNHSCEPNLL---MIPVRIDSMVPKLALFAAKDIVPEEELSYDY 249
Query: 236 -GYELDSVHGPD------GKVKQMVCYCGAEGCRGRL 265
G L+ GK+++ CYCGA+ C L
Sbjct: 250 SGRYLNLTVSASKERLDHGKLRKP-CYCGAKSCTAFL 285
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 113/276 (40%), Gaps = 44/276 (15%)
Query: 14 IGCDCRGN--CLNSHDCSCAKLNSTDSKHYDFPYVHRDG--------------GRLVEAK 57
+GC C + C+ S C C + DS PY + R+++++
Sbjct: 48 VGCSCASDEECMYS-TCQCLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQ 106
Query: 58 AVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVL 117
++EC C C DC NR +RG L+++RT +GW V+ I G V Y+G +
Sbjct: 107 EPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEI 166
Query: 118 RRTEDLDNACDNENNFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPD--DQKVENT 175
+E+ D DV + + PD D +
Sbjct: 167 ITSEEADR------------------RRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQ 208
Query: 176 PDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDY 235
P +D + RFINHSC+PN+ + + H D + + LFA +IP ELT+DY
Sbjct: 209 P-LEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDY 267
Query: 236 -----GYELDSVHGPDGKVKQMVCYCGAEGCRGRLF 266
G E D+ H P + C CG CRG L+
Sbjct: 268 VNGLTGLESDA-HDPSKISEMTKCLCGTAKCRGYLW 302
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 57 KAVVFECGPK-CGCGPDCINRTSQRGLKYR-LEVYRTPKKGWAVRSWDFIPAGAPVCEYI 114
+ + EC P C CG C N+ QR + LE +R +KGW +R+ + + AG + EY+
Sbjct: 45 RMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYL 104
Query: 115 GVLRRTEDLDNACDNENNFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVEN 174
G + ++ N + + D CL D V
Sbjct: 105 GEVVSEQEFRNRMIEQYHNHSDHYCLNL-------------------------DSGMV-- 137
Query: 175 TPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYD 234
ID+ +GN ARFINHSC+PN C + + R+ L+A ++P ELTYD
Sbjct: 138 -----IDSYRMGNEARFINHSCDPN----CEMQKWSVNGVYRIGLYALKDMPAGTELTYD 188
Query: 235 YGYELDSVHGPDGKVKQMVCYCGAEGCRG 263
Y + +V KQ +C CG E CRG
Sbjct: 189 YNFHSFNVE------KQQLCKCGFEKCRG 211
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 85/209 (40%), Gaps = 42/209 (20%)
Query: 57 KAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGV 116
+ ++ EC +C G C NR QR +EV T KKGW +R+ +P+ V EY G
Sbjct: 90 RLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCG- 148
Query: 117 LRRTEDLDNACDNENNFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTP 176
+ L + +I + + + D+
Sbjct: 149 ---------------------EVLDHKEFKARVKEYARNKNIHYYFMALKNDE------- 180
Query: 177 DYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYG 236
IDA GN +RF+NHSCEPN Q + RV F +P ELT+DY
Sbjct: 181 --IIDATQKGNCSRFMNHSCEPNCETQKWTVNGQ----LRVGFFTTKLVPSGSELTFDYQ 234
Query: 237 YELDSVHGPDGKVKQMVCYCGAEGCRGRL 265
++ +G + + C+CG+ CRG L
Sbjct: 235 FQR---YGKEAQ----KCFCGSANCRGYL 256
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 57 KAVVFECGPK-CGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIG 115
+ +++EC P C G C N+ + +E++RT ++GW +R+ I G V EY+G
Sbjct: 64 RMLLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVG 123
Query: 116 VLRRTEDLDNACDNENNFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENT 175
L I + +C + D++ + D+
Sbjct: 124 EL----------------IDEEECRARIRYAQEH-----DITNFYMLTLDK--------- 153
Query: 176 PDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDY 235
D IDAG GN ARF+NH C+PN Q S + D RV LFA +I ELT++Y
Sbjct: 154 -DRIIDAGPKGNYARFMNHCCQPNCETQ-KWSVNGD---TRVGLFALSDIKAGTELTFNY 208
Query: 236 GYELDSVHGPDGKVKQMVCYCGAEGCRGRL 265
E +GK VC CGA C G L
Sbjct: 209 NLECLG----NGKT---VCKCGAPNCSGFL 231
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 180 IDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYEL 239
+DA GN ARFINHSCEPN + + + +V+FA I +ELTYDY + +
Sbjct: 116 VDATMHGNAARFINHSCEPNCYSRVINIDGQ----KHIVIFAMRKIYRGEELTYDYKFPI 171
Query: 240 DSVHGPDGKVKQMVCYCGAEGCRGRL 265
+ ++ C CGA+ CR L
Sbjct: 172 EDASN------KLPCNCGAKKCRKFL 191
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 175 TPDYCIDAGAVGN-VARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTY 233
+ YC+DA N + R INHS N C H + ++L A+ +I +EL Y
Sbjct: 92 SKTYCVDATRETNRLGRLINHSKSGN----CQTKLHDIDGVPHLILIASRDIAAGEELLY 147
Query: 234 DYG 236
DYG
Sbjct: 148 DYG 150
>pdb|1A2D|A Chain A, Pyridoxamine Modified Murine Adipocyte Lipid Binding
Protein
pdb|1A2D|B Chain B, Pyridoxamine Modified Murine Adipocyte Lipid Binding
Protein
pdb|1A18|A Chain A, Phenanthroline Modified Murine Adipocyte Lipid Binding
Protein
pdb|3JS1|A Chain A, Crystal Structure Of Adipocyte Fatty Acid Binding Protein
Covalently Modified With 4-Hydroxy-2-Nonenal
pdb|3JS1|B Chain B, Crystal Structure Of Adipocyte Fatty Acid Binding Protein
Covalently Modified With 4-Hydroxy-2-Nonenal
pdb|1LIE|A Chain A, X-Ray Crystallographic Structures Of Adipocyte Lipid
Binding Protein Complexed With Palmitate And
Hexadecanesulfonic Acid. Properties Of Cavity Binding
Sites
Length = 131
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R + +PN+ ++S + DL V +++ E++
Sbjct: 14 ENFDDYMKEVG-VGFATRKVAGMAKPNM----IISVNGDL-----VTIRSESTFKNTEIS 63
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D + D KVK ++ G
Sbjct: 64 FKLGVEFDEITADDRKVKSIITLDGG 89
>pdb|2ANS|A Chain A, Adipocyte Lipid Binding Protein Complexed With
1-anilino-8-naphthalene Sulfonate
pdb|2ANS|B Chain B, Adipocyte Lipid Binding Protein Complexed With
1-anilino-8-naphthalene Sulfonate
pdb|1ADL|A Chain A, Adipocyte Lipid Binding Protein Complexed With Arachidonic
Acid: X-Ray Crystallographic And Titration Calorimetry
Studies
pdb|1ALB|A Chain A, Crystal Structure Of Recombinant Murine Adipocyte Lipid-
Binding Protein
pdb|1LIB|A Chain A, The Adipocyte Lipid-Binding Protein At 1.6 Angstroms
Resolution: Crystal Structures Of The Apoprotein And
With Bound Saturated And Unsaturated Fatty Acids
pdb|1LIC|A Chain A, X-Ray Crystallographic Structures Of Adipocyte Lipid
Binding Protein Complexed With Palmitate And
Hexadecanesulfonic Acid. Properties Of Cavity Binding
Sites.
pdb|1LID|A Chain A, The Adipocyte Lipid-Binding Protein At 1.6 Angstroms
Resolution: Crystal Structures Of The Apoprotein And
With Bound Saturated And Unsaturated Fatty Acids
pdb|1LIF|A Chain A, The Adipocyte Lipid-Binding Protein At 1.6 Angstroms
Resolution: Crystal Structures Of The Apoprotein And
With Bound Saturated And Unsaturated Fatty Acids
pdb|3HK1|A Chain A, Identification And Characterization Of A Small Molecule
Inhibitor Of Fatty Acid Binding Proteins
pdb|3JSQ|A Chain A, Crystal Structure Of Adipocyte Fatty Acid Binding Protein
Non- Covalently Modified With 4-Hydroxy-2-Nonenal
Length = 131
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R + +PN+ ++S + DL V +++ E++
Sbjct: 14 ENFDDYMKEVG-VGFATRKVAGMAKPNM----IISVNGDL-----VTIRSESTFKNTEIS 63
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D + D KVK ++ G
Sbjct: 64 FKLGVEFDEITADDRKVKSIITLDGG 89
>pdb|2QM9|A Chain A, Troglitazone Bound To Fatty Acid Binding Protein 4
pdb|2QM9|B Chain B, Troglitazone Bound To Fatty Acid Binding Protein 4
pdb|2Q9S|A Chain A, Linoleic Acid Bound To Fatty Acid Binding Protein 4
Length = 155
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R + +PN+ ++S + DL V +++ E++
Sbjct: 38 ENFDDYMKEVG-VGFATRKVAGMAKPNM----IISVNGDL-----VTIRSESTFKNTEIS 87
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D + D KVK ++ G
Sbjct: 88 FKLGVEFDEITADDRKVKSIITLDGG 113
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 175 TPDYCIDAGAVGN-VARFINHS----CEPNLFVQCVLSSHHDLK-LARVVLFAADNIPPL 228
+ YC+DA N + R INHS C+ L HD+ + ++L A+ +I
Sbjct: 94 SKTYCVDATRETNRLGRLINHSKCGNCQTKL---------HDIDGVPHLILIASRDIAAG 144
Query: 229 QELTYDYG 236
+EL YDYG
Sbjct: 145 EELLYDYG 152
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 175 TPDYCIDAGAVGN-VARFINHS----CEPNLFVQCVLSSHHDLK-LARVVLFAADNIPPL 228
+ YC+DA N + R INHS C+ L HD+ + ++L A+ +I
Sbjct: 93 SKTYCVDATRETNRLGRLINHSKCGNCQTKL---------HDIDGVPHLILIASRDIAAG 143
Query: 229 QELTYDYG 236
+EL YDYG
Sbjct: 144 EELLYDYG 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 175 TPDYCIDAGAVGN-VARFINHS----CEPNLFVQCVLSSHHDLK-LARVVLFAADNIPPL 228
+ YC+DA N + R INHS C+ L HD+ + ++L A+ +I
Sbjct: 88 SKTYCVDATRETNRLGRLINHSKCGNCQTKL---------HDIDGVPHLILIASRDIAAG 138
Query: 229 QELTYDYG 236
+EL YDYG
Sbjct: 139 EELLYDYG 146
>pdb|3P6C|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With Citric Acid
pdb|3P6D|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With 3-(4- Methoxy-3-Methylphenyl) Propionic Acid
pdb|3P6E|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With 3-(4- Methoxyphenyl) Propionic Acid
pdb|3P6F|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (S)-3- Phenyl Butyric Acid
pdb|3P6G|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (R)- Ibuprofen
pdb|3P6H|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4 In Complex
With (S)- Ibuprofen
pdb|3RZY|A Chain A, Human Adipocyte Lipid-Binding Protein Fabp4, Apo Form At
1.08 Ang Resolution
Length = 139
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R + +PN+ ++S + D V+ +++ E++
Sbjct: 22 ENFDDYMKEVG-VGFATRKVAGMAKPNM----IISVNGD-----VITIKSESTFKNTEIS 71
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D V D KVK + G
Sbjct: 72 FILGQEFDEVTADDRKVKSTITLDGG 97
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 175 TPDYCIDAGAVGN-VARFINHS----CEPNLFVQCVLSSHHDLK-LARVVLFAADNIPPL 228
+ YC+DA N + R INHS C+ L HD+ + ++L A+ +I
Sbjct: 93 SKTYCVDATRETNRLGRLINHSKCGNCQTKL---------HDIDGVPHLILIASRDIAAG 143
Query: 229 QELTYDYG 236
+EL +DYG
Sbjct: 144 EELLFDYG 151
>pdb|3FR4|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
Length = 132
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R + +PN+ ++S + D V+ +++ E++
Sbjct: 15 ENFDDYMKEVG-VGFATRKVAGMAKPNM----IISVNGD-----VITIKSESTFKNTEIS 64
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D V D KVK + G
Sbjct: 65 FILGQEFDEVTADDRKVKSTITLDGG 90
>pdb|1TOU|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With A Non-Covalent Ligand
pdb|1TOW|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With A Carboxylic Acid Ligand
pdb|2NNQ|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein In Complex With
((2'-(5-Ethyl-3,4-Diphenyl-1h-Pyrazol-1-Yl)-3-
Biphenylyl)oxy)acetic Acid
pdb|3FR2|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
pdb|3FR5|A Chain A, N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of
Potent And Selective Adipocyte Fatty-Acid Binding
Protein (A-Fabp) Inhibitors
Length = 131
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R + +PN+ ++S + D V+ +++ E++
Sbjct: 14 ENFDDYMKEVG-VGFATRKVAGMAKPNM----IISVNGD-----VITIKSESTFKNTEIS 63
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D V D KVK + G
Sbjct: 64 FILGQEFDEVTADDRKVKSTITLDGG 89
>pdb|1AB0|A Chain A, C1gV32DF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING
Protein At Ph 4.5
Length = 131
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R +PN+ ++S + DL V +++ E++
Sbjct: 14 ENFDDYMKEVG-VGFATRKDAGMAKPNM----IISVNGDL-----VTIRSESTHKNTEIS 63
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D + D KVK ++ G
Sbjct: 64 FKLGVEFDEITADDRKVKSIITLDGG 89
>pdb|2HNX|A Chain A, Crystal Structure Of Ap2
Length = 136
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R + +PN+ ++S + D V+ +++ E++
Sbjct: 19 ENFDDYMKEVG-VGFATRKVAGMAKPNM----IISVNGD-----VITIKSESTFKNTEIS 68
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D V D KVK + G
Sbjct: 69 FILGQEFDEVTADDRKVKSTITLDGG 94
>pdb|1ACD|A Chain A, V32dF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING PROTEIN
Length = 131
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R +PN+ ++S + DL V +++ E++
Sbjct: 14 ENFDDYMKEVG-VGFATRKDAGMAKPNM----IISVNGDL-----VTIRSESTHKNTEIS 63
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D + D KVK ++ G
Sbjct: 64 FKLGVEFDEITADDRKVKSIITLDGG 89
>pdb|3Q6L|A Chain A, Crystal Structure Of Human Adipocyte Fatty Acid Binding
Protein (Fabp4) At 1.4 Ang. Resolution
Length = 152
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 173 ENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELT 232
EN DY + G VG R + +PN+ ++S + D V+ +++ E++
Sbjct: 35 ENFDDYMKEVG-VGFATRKVAGMAKPNM----IISVNGD-----VITIKSESTFKNTEIS 84
Query: 233 YDYGYELDSVHGPDGKVKQMVCYCGA 258
+ G E D V D KVK + G
Sbjct: 85 FILGQEFDEVTADDRKVKSTITLDGG 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,379,494
Number of Sequences: 62578
Number of extensions: 329918
Number of successful extensions: 599
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 49
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)