Query 024518
Match_columns 266
No_of_seqs 249 out of 1638
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1082 Histone H3 (Lys9) meth 100.0 7.4E-48 1.6E-52 348.5 16.0 245 9-266 103-354 (364)
2 KOG4442 Clathrin coat binding 100.0 4.6E-46 1E-50 343.6 11.8 161 57-265 91-259 (729)
3 KOG1141 Predicted histone meth 100.0 3.8E-38 8.3E-43 293.5 5.0 86 176-266 1177-1262(1262)
4 KOG1079 Transcriptional repres 100.0 1.1E-32 2.3E-37 253.9 10.2 142 58-240 557-713 (739)
5 KOG1080 Histone H3 (Lys4) meth 100.0 1.5E-32 3.2E-37 268.7 10.2 133 84-265 866-1004(1005)
6 smart00317 SET SET (Su(var)3-9 99.9 1.4E-25 2.9E-30 170.5 13.6 110 85-235 1-116 (116)
7 KOG1083 Putative transcription 99.9 1.1E-24 2.4E-29 208.5 1.7 127 72-239 1165-1297(1306)
8 KOG1085 Predicted methyltransf 99.8 1.7E-19 3.6E-24 152.2 8.8 120 81-238 253-379 (392)
9 COG2940 Proteins containing SE 99.8 1.8E-19 4E-24 169.1 2.7 161 71-266 319-480 (480)
10 PF00856 SET: SET domain; Int 99.6 1.6E-15 3.5E-20 120.5 7.8 55 178-236 108-162 (162)
11 PF05033 Pre-SET: Pre-SET moti 99.2 1.7E-11 3.7E-16 91.6 3.7 67 3-76 34-103 (103)
12 KOG1081 Transcription factor N 99.0 9.7E-11 2.1E-15 108.9 1.7 148 59-265 288-436 (463)
13 KOG2589 Histone tail methylase 98.8 2.8E-09 6E-14 93.6 4.4 105 93-242 136-243 (453)
14 smart00468 PreSET N-terminal t 98.8 6.5E-09 1.4E-13 76.9 5.2 61 2-68 35-98 (98)
15 KOG2461 Transcription factor B 98.6 4E-08 8.6E-13 89.6 5.7 115 82-240 26-147 (396)
16 KOG1141 Predicted histone meth 98.3 6E-07 1.3E-11 86.1 3.6 127 12-140 925-1070(1262)
17 smart00508 PostSET Cysteine-ri 97.3 9.7E-05 2.1E-09 40.2 1.2 15 251-265 2-16 (26)
18 smart00570 AWS associated with 96.5 0.0009 2E-08 42.9 0.6 27 56-82 24-50 (51)
19 KOG2084 Predicted histone tail 92.3 0.2 4.4E-06 46.8 4.8 43 191-241 208-251 (482)
20 KOG1337 N-methyltransferase [G 90.9 0.19 4.1E-06 47.6 3.0 40 191-237 239-278 (472)
21 PF08666 SAF: SAF domain; Int 78.5 1.4 3E-05 28.9 1.6 16 218-233 3-18 (63)
22 PF03638 TCR: Tesmin/TSO1-like 77.9 1.9 4.1E-05 26.4 1.9 38 12-77 2-40 (42)
23 PF11403 Yeast_MT: Yeast metal 73.6 2.5 5.5E-05 24.3 1.5 19 12-30 20-38 (40)
24 KOG3813 Uncharacterized conser 63.7 4.1 8.8E-05 38.4 1.6 22 12-34 306-327 (640)
25 KOG1338 Uncharacterized conser 63.0 5.4 0.00012 36.5 2.2 44 187-240 217-263 (466)
26 KOG1171 Metallothionein-like p 62.0 3.1 6.7E-05 38.3 0.5 36 12-75 216-252 (406)
27 KOG2155 Tubulin-tyrosine ligas 59.2 5.2 0.00011 37.2 1.4 49 188-238 204-252 (631)
28 smart00858 SAF This domain fam 55.5 8.2 0.00018 25.1 1.6 16 218-233 3-18 (64)
29 KOG1079 Transcriptional repres 48.5 12 0.00026 36.6 2.0 22 12-33 500-521 (739)
30 smart00317 SET SET (Su(var)3-9 43.7 39 0.00085 24.2 3.9 17 95-111 97-113 (116)
31 TIGR03569 NeuB_NnaB N-acetylne 30.8 29 0.00064 31.3 1.6 20 216-235 277-296 (329)
32 PF02068 Metallothio_PEC: Plan 30.1 50 0.0011 22.8 2.2 46 14-75 4-50 (76)
33 TIGR02059 swm_rep_I cyanobacte 26.8 80 0.0017 23.2 3.0 24 215-238 75-98 (101)
34 TIGR03170 flgA_cterm flagella 26.2 33 0.00072 25.7 1.0 15 219-233 2-16 (122)
35 KOG1081 Transcription factor N 26.1 23 0.00049 33.6 0.1 47 180-230 184-230 (463)
36 TIGR03586 PseI pseudaminic aci 25.6 45 0.00097 30.1 1.8 20 216-235 275-294 (327)
37 KOG1338 Uncharacterized conser 22.8 55 0.0012 30.3 1.8 25 93-117 39-63 (466)
38 PF13121 DUF3976: Domain of un 21.9 67 0.0014 18.9 1.4 17 217-233 1-17 (41)
No 1
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.4e-48 Score=348.50 Aligned_cols=245 Identities=37% Similarity=0.611 Sum_probs=186.1
Q ss_pred CCCCCCCcccCCCCCCCC--CcccccccccCCCCCCCcccccCCC-eeeeccceEEEcCCCCCCCCCCCCcccccCCccc
Q 024518 9 LPTTAIGCDCRGNCLNSH--DCSCAKLNSTDSKHYDFPYVHRDGG-RLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYR 85 (266)
Q Consensus 9 ~~~~~~gC~C~~~C~~~~--~C~C~~~~~~~~~~~~~~y~~~~~g-~l~~~~~~~~EC~~~C~C~~~C~Nr~~q~~~~~~ 85 (266)
.+.+..+|.|.+.|.... .|.|.+.+.. .++|....++ .+...+.++|||++.|+|++.|.||++|+|.+.+
T Consensus 103 ~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~-----~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~ 177 (364)
T KOG1082|consen 103 DCENSTGCRCCSSCSSVLPLTCLCERHNGG-----LVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQFH 177 (364)
T ss_pred cCccccCCCccCCCCCCCCccccChHhhCC-----ccccccCCccccccccCccccccccCCCCCCcCcchhhccccccc
Confidence 446899999998887532 3999999988 6777633322 6667788999999999999999999999999999
Q ss_pred EEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhccCCCceEEecchhhhhccCCCceeecccccceeecCCC
Q 024518 86 LEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSD 165 (266)
Q Consensus 86 l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (266)
|+||+++.+|||||+++.||+|+||+||+||+++.++++++.. ...|.++......... ......+...+..
T Consensus 178 leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 249 (364)
T KOG1082|consen 178 LEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTH-LREYLDDDCDAYSIAD-------REWVDESPVGNTF 249 (364)
T ss_pred eEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccc-cccccccccccchhhh-------ccccccccccccc
Confidence 9999999999999999999999999999999999999986643 2344443211000000 0000000001111
Q ss_pred CCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCCCCCCCCCC
Q 024518 166 RPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGP 245 (266)
Q Consensus 166 ~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~~~~~~~~~ 245 (266)
............++|||+..||++|||||||.||+.++.|+.++.++..++++|||+++|+||||||+|||..+......
T Consensus 250 ~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~ 329 (364)
T KOG1082|consen 250 VAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQD 329 (364)
T ss_pred cccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccccccccc
Confidence 11111223345699999999999999999999999999999999999999999999999999999999999876521111
Q ss_pred -C---CCccCeeeeeCCCCcccccC
Q 024518 246 -D---GKVKQMVCYCGAEGCRGRLF 266 (266)
Q Consensus 246 -~---~~~~~~~C~Cgs~~Crg~l~ 266 (266)
. .......|.||+.+||+.++
T Consensus 330 ~~~~~~~~~~~~c~c~~~~cr~~~~ 354 (364)
T KOG1082|consen 330 GANIYTPVMKKNCNCGLEKCRGLLG 354 (364)
T ss_pred cccccccccchhhcCCCHHhCcccC
Confidence 1 12356789999999999874
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-46 Score=343.65 Aligned_cols=161 Identities=35% Similarity=0.634 Sum_probs=139.7
Q ss_pred cceEEEcCC-CCC-CCCCCCCcccccCCcccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhcc------
Q 024518 57 KAVVFECGP-KCG-CGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACD------ 128 (266)
Q Consensus 57 ~~~~~EC~~-~C~-C~~~C~Nr~~q~~~~~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~------ 128 (266)
+....||++ .|. |+..|+|+.+|+..-.+++||+|++|||||+|.++||+|+||+||.||||+.+|.++|..
T Consensus 91 r~t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~ 170 (729)
T KOG4442|consen 91 RMTSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDG 170 (729)
T ss_pred hhhhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcC
Confidence 445678999 799 999999999999999999999999999999999999999999999999999999986654
Q ss_pred CCCceEEecchhhhhccCCCceeecccccceeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEec
Q 024518 129 NENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSS 208 (266)
Q Consensus 129 ~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~ 208 (266)
..+.|.+.+. ...+|||+.+||.||||||||+||++++.|.+.
T Consensus 171 ~kh~Yfm~L~-------------------------------------~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~ 213 (729)
T KOG4442|consen 171 IKHYYFMALQ-------------------------------------GGEYIDATKKGNLARFINHSCDPNAEVQKWTVP 213 (729)
T ss_pred CceEEEEEec-------------------------------------CCceecccccCcHHHhhcCCCCCCceeeeeeeC
Confidence 1122333321 148999999999999999999999999999886
Q ss_pred cCCCCccEEEEEEcCCCCCCCeeEeecCCCCCCCCCCCCCccCeeeeeCCCCccccc
Q 024518 209 HHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGCRGRL 265 (266)
Q Consensus 209 ~~~~~~~~i~~fA~rdI~~GeELT~dYg~~~~~~~~~~~~~~~~~C~Cgs~~Crg~l 265 (266)
+ ..||+|||.|.|++||||||||+++.... ...+|.||+++|+|||
T Consensus 214 ~----~lRvGiFakk~I~~GEEITFDYqf~rYGr-------~AQ~CyCgeanC~G~I 259 (729)
T KOG4442|consen 214 D----ELRVGIFAKKVIKPGEEITFDYQFDRYGR-------DAQPCYCGEANCRGWI 259 (729)
T ss_pred C----eeEEEEeEecccCCCceeeEecccccccc-------cccccccCCccccccc
Confidence 5 58999999999999999999999875321 2478999999999997
No 3
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-38 Score=293.49 Aligned_cols=86 Identities=50% Similarity=0.919 Sum_probs=80.7
Q ss_pred CceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCCCCCCCCCCCCCccCeeee
Q 024518 176 PDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCY 255 (266)
Q Consensus 176 ~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~~~~~~~~~~~~~~~~~C~ 255 (266)
+-|+|||+..||++||+||||.||+.+++|+++.+|.++|+++|||.|-|+||+||||||+|+..++.. +...|.
T Consensus 1177 ~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~-----keL~C~ 1251 (1262)
T KOG1141|consen 1177 PLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVAT-----KELTCH 1251 (1262)
T ss_pred ceEEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecccccccccc-----ceEEEe
Confidence 468999999999999999999999999999999999999999999999999999999999999877653 568999
Q ss_pred eCCCCcccccC
Q 024518 256 CGAEGCRGRLF 266 (266)
Q Consensus 256 Cgs~~Crg~l~ 266 (266)
||+.+|||+|+
T Consensus 1252 CGa~~CrgrLL 1262 (1262)
T KOG1141|consen 1252 CGAENCRGRLL 1262 (1262)
T ss_pred cChhhhhcccC
Confidence 99999999985
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.98 E-value=1.1e-32 Score=253.87 Aligned_cols=142 Identities=29% Similarity=0.523 Sum_probs=123.6
Q ss_pred ceEEEcCCC-CCC----------CCCCCCcccccCCcccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhh
Q 024518 58 AVVFECGPK-CGC----------GPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNA 126 (266)
Q Consensus 58 ~~~~EC~~~-C~C----------~~~C~Nr~~q~~~~~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~ 126 (266)
....||+|. |.+ ..+|.|.-+|++.+.++-|..+...|||+|+++.+.+++||.||+||+|+.+||++|
T Consensus 557 ~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrR 636 (739)
T KOG1079|consen 557 LAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRR 636 (739)
T ss_pred hhccccCchHHhccCcccccccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhc
Confidence 456789864 554 138999999999999999999999999999999999999999999999999999988
Q ss_pred cc----CCCceEEecchhhhhccCCCceeecccccceeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceE
Q 024518 127 CD----NENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFV 202 (266)
Q Consensus 127 ~~----~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~ 202 (266)
.+ ..-+|+|+|.. +++|||++.||.+||+|||-+|||++
T Consensus 637 GkiYDr~~cSflFnln~-------------------------------------dyviDs~rkGnk~rFANHS~nPNCYA 679 (739)
T KOG1079|consen 637 GKIYDRYMCSFLFNLNN-------------------------------------DYVIDSTRKGNKIRFANHSFNPNCYA 679 (739)
T ss_pred ccccccccceeeeeccc-------------------------------------cceEeeeeecchhhhccCCCCCCcEE
Confidence 76 23455665521 39999999999999999999999999
Q ss_pred EEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCCCCC
Q 024518 203 QCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELD 240 (266)
Q Consensus 203 ~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~~~~ 240 (266)
..+++.+. .||.|||.|+|.+||||||||+|+..
T Consensus 680 kvm~V~Gd----hRIGifAkRaIeagEELffDYrYs~~ 713 (739)
T KOG1079|consen 680 KVMMVAGD----HRIGIFAKRAIEAGEELFFDYRYSPE 713 (739)
T ss_pred EEEEecCC----cceeeeehhhcccCceeeeeeccCcc
Confidence 98887654 79999999999999999999999754
No 5
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.5e-32 Score=268.67 Aligned_cols=133 Identities=35% Similarity=0.661 Sum_probs=115.2
Q ss_pred ccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhcc------CCCceEEecchhhhhccCCCceeeccccc
Q 024518 84 YRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACD------NENNFIFDIDCLQTMRGLGGRERRLRDVS 157 (266)
Q Consensus 84 ~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~------~~~~y~~~l~~~~~~~~~~~~~~~~~~~~ 157 (266)
.+|...++..+||||||.+.|.+|++|.||+||+|...-|+.+.. -++.|+|.+|.
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~------------------ 927 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDD------------------ 927 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeeccc------------------
Confidence 447777888899999999999999999999999998776663322 36889998762
Q ss_pred ceeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCC
Q 024518 158 ISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGY 237 (266)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~ 237 (266)
..+|||++.||+||||||||+|||+...+.+++. .+|+|||.|||.+||||||||.+
T Consensus 928 -------------------~~ViDAtk~gniAr~InHsC~PNCyakvi~V~g~----~~IvIyakr~I~~~EElTYDYkF 984 (1005)
T KOG1080|consen 928 -------------------EVVVDATKKGNIARFINHSCNPNCYAKVITVEGD----KRIVIYSKRDIAAGEELTYDYKF 984 (1005)
T ss_pred -------------------ceEEeccccCchhheeecccCCCceeeEEEecCe----eEEEEEEecccccCceeeeeccc
Confidence 3899999999999999999999999998877754 69999999999999999999998
Q ss_pred CCCCCCCCCCCccCeeeeeCCCCccccc
Q 024518 238 ELDSVHGPDGKVKQMVCYCGAEGCRGRL 265 (266)
Q Consensus 238 ~~~~~~~~~~~~~~~~C~Cgs~~Crg~l 265 (266)
..+. ...+|+|||++|||+|
T Consensus 985 ~~e~--------~kipClCgap~Crg~~ 1004 (1005)
T KOG1080|consen 985 PTED--------DKIPCLCGAPNCRGFL 1004 (1005)
T ss_pred cccc--------cccccccCCCcccccc
Confidence 7653 2479999999999997
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.93 E-value=1.4e-25 Score=170.45 Aligned_cols=110 Identities=45% Similarity=0.822 Sum_probs=90.2
Q ss_pred cEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhcc----CC--CceEEecchhhhhccCCCceeecccccc
Q 024518 85 RLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACD----NE--NNFIFDIDCLQTMRGLGGRERRLRDVSI 158 (266)
Q Consensus 85 ~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~----~~--~~y~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (266)
++++++++.+|+||+|+++|++|++|++|.|+++...++..... .. ..|+|...
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 60 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEID-------------------- 60 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECC--------------------
Confidence 36788889999999999999999999999999998877664321 11 23443321
Q ss_pred eeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeec
Q 024518 159 STIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDY 235 (266)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dY 235 (266)
..++||+...||++|||||||.||+.+..+...+. .++.|+|+|||++|||||+||
T Consensus 61 -----------------~~~~id~~~~~~~~~~iNHsc~pN~~~~~~~~~~~----~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 61 -----------------SDLCIDARRKGNIARFINHSCEPNCELLFVEVNGD----SRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred -----------------CCEEEeCCccCcHHHeeCCCCCCCEEEEEEEECCC----cEEEEEECCCcCCCCEEeecC
Confidence 03889999999999999999999999987766432 489999999999999999999
No 7
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.89 E-value=1.1e-24 Score=208.51 Aligned_cols=127 Identities=39% Similarity=0.640 Sum_probs=106.2
Q ss_pred CCCCccccc-CCcccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhh-cc----CCCceEEecchhhhhcc
Q 024518 72 DCINRTSQR-GLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNA-CD----NENNFIFDIDCLQTMRG 145 (266)
Q Consensus 72 ~C~Nr~~q~-~~~~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~-~~----~~~~y~~~l~~~~~~~~ 145 (266)
.|.|+.+|+ +.-.+|++++.+.+||||+|.+.|++||||+||+|||++.++.+.+ .. ....|.+.+
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I-------- 1236 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVI-------- 1236 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCccccccc--------
Confidence 488888886 4568899999999999999999999999999999999999887643 11 112222222
Q ss_pred CCCceeecccccceeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCC
Q 024518 146 LGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNI 225 (266)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI 225 (266)
.+..+||+.++||.+||+||||.|||..+.|-+.+ ..||.+||+|||
T Consensus 1237 -----------------------------~p~l~id~~R~~n~~RfinhscKPNc~~qkwSVNG----~~Rv~L~A~rDi 1283 (1306)
T KOG1083|consen 1237 -----------------------------DPGLFIDIPRMGNGARFINHSCKPNCEMQKWSVNG----EYRVGLFALRDL 1283 (1306)
T ss_pred -----------------------------CccccCChhhccccccccccccCCCCccccccccc----eeeeeeeecCCC
Confidence 23589999999999999999999999999987764 589999999999
Q ss_pred CCCCeeEeecCCCC
Q 024518 226 PPLQELTYDYGYEL 239 (266)
Q Consensus 226 ~~GeELT~dYg~~~ 239 (266)
.+|||||+||+...
T Consensus 1284 ~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1284 PKGEELTYDYNFKS 1297 (1306)
T ss_pred CCCceEEEeccccc
Confidence 99999999997643
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=152.24 Aligned_cols=120 Identities=29% Similarity=0.373 Sum_probs=95.1
Q ss_pred CCcccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhcc------CCCceEEecchhhhhccCCCceeecc
Q 024518 81 GLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACD------NENNFIFDIDCLQTMRGLGGRERRLR 154 (266)
Q Consensus 81 ~~~~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~------~~~~y~~~l~~~~~~~~~~~~~~~~~ 154 (266)
|....|.+..-.+||.||+|+..+.+|+||.||.|.+|.-.|+..+.+ +-.-|+|-..+
T Consensus 253 g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h--------------- 317 (392)
T KOG1085|consen 253 GTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEH--------------- 317 (392)
T ss_pred ccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeec---------------
Confidence 344556676677899999999999999999999999998888765433 11233332211
Q ss_pred cccceeecCCCCCCCcccCCCCceEEeCCCC-CceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEe
Q 024518 155 DVSISTIYNSDRPDDQKVENTPDYCIDAGAV-GNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTY 233 (266)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~-Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~ 233 (266)
....|+|||+.- +-++|.||||=.+|+....|.+++. |++.++|.|||.+||||++
T Consensus 318 -------------------~sk~yCiDAT~et~~lGRLINHS~~gNl~TKvv~Idg~----pHLiLvA~rdIa~GEELlY 374 (392)
T KOG1085|consen 318 -------------------NSKKYCIDATKETPWLGRLINHSVRGNLKTKVVEIDGS----PHLILVARRDIAQGEELLY 374 (392)
T ss_pred -------------------cCeeeeeecccccccchhhhcccccCcceeeEEEecCC----ceEEEEeccccccchhhhh
Confidence 112499999875 5579999999999999998888754 9999999999999999999
Q ss_pred ecCCC
Q 024518 234 DYGYE 238 (266)
Q Consensus 234 dYg~~ 238 (266)
|||+.
T Consensus 375 DYGDR 379 (392)
T KOG1085|consen 375 DYGDR 379 (392)
T ss_pred hcccc
Confidence 99975
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.76 E-value=1.8e-19 Score=169.13 Aligned_cols=161 Identities=25% Similarity=0.395 Sum_probs=118.2
Q ss_pred CCCCCcccccCCcccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhccCCCceEEecchhhhhccCCCce
Q 024518 71 PDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRE 150 (266)
Q Consensus 71 ~~C~Nr~~q~~~~~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 150 (266)
..+.|...+.....+..+..+..+||||||.+.|++|++|.+|.|+++...++..+.. .| ..+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~---~~-~~~~~----------- 383 (480)
T COG2940 319 KELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREE---NY-DLLGN----------- 383 (480)
T ss_pred cchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhc---cc-ccccc-----------
Confidence 3455555556666777788888999999999999999999999999998888775433 11 11100
Q ss_pred eecccccceeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCe
Q 024518 151 RRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQE 230 (266)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeE 230 (266)
...+.. ......++|+...|+++|||||||.||+........+ ..++.++|+|||.+|||
T Consensus 384 --------~~~~~~--------~~~~~~~~d~~~~g~~~r~~nHS~~pN~~~~~~~~~g----~~~~~~~~~rDI~~geE 443 (480)
T COG2940 384 --------EFSFGL--------LEDKDKVRDSQKAGDVARFINHSCTPNCEASPIEVNG----IFKISIYAIRDIKAGEE 443 (480)
T ss_pred --------ccchhh--------ccccchhhhhhhcccccceeecCCCCCcceecccccc----cceeeecccccchhhhh
Confidence 000000 0011378999999999999999999999987665432 56899999999999999
Q ss_pred eEeecCCCCCCCCC-CCCCccCeeeeeCCCCcccccC
Q 024518 231 LTYDYGYELDSVHG-PDGKVKQMVCYCGAEGCRGRLF 266 (266)
Q Consensus 231 LT~dYg~~~~~~~~-~~~~~~~~~C~Cgs~~Crg~l~ 266 (266)
||+||+...+.... .........|.||++.|++.|.
T Consensus 444 l~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480)
T COG2940 444 LTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTMS 480 (480)
T ss_pred hccccccccccchhhhhhhhhhhccccCCCccCCCCC
Confidence 99999988765331 1112245799999999999873
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.61 E-value=1.6e-15 Score=120.53 Aligned_cols=55 Identities=29% Similarity=0.333 Sum_probs=43.7
Q ss_pred eEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecC
Q 024518 178 YCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYG 236 (266)
Q Consensus 178 ~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg 236 (266)
...++.....++.|+||||.||+.+...+.. ....+.|+|.|||++|||||++||
T Consensus 108 ~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~----~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 108 DDRDGIALYPFADMLNHSCDPNCEVSFDFDG----DGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEEETGGGGSEEESSTSEEEEEEEET----TTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccccCcHhHheccccccccceeeEeec----ccceEEEEECCccCCCCEEEEEEC
Confidence 3455566677899999999999998765432 347999999999999999999997
No 11
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.18 E-value=1.7e-11 Score=91.60 Aligned_cols=67 Identities=43% Similarity=0.974 Sum_probs=46.3
Q ss_pred cCCCCC--CCCCCCCcccCCCCCCCCCcccccccccCCCCCCCcccccCCCeee-eccceEEEcCCCCCCCCCCCCc
Q 024518 3 VAKGVK--LPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLV-EAKAVVFECGPKCGCGPDCINR 76 (266)
Q Consensus 3 ~~~~~~--~~~~~~gC~C~~~C~~~~~C~C~~~~~~~~~~~~~~y~~~~~g~l~-~~~~~~~EC~~~C~C~~~C~Nr 76 (266)
+.+|+. .+.+..||+|.++|.++.+|+|.+.++. .++|. .+|+|. ....+||||++.|+|+.+|+||
T Consensus 34 ~~~~~~~~~~~~~~~C~C~~~C~~~~~C~C~~~~~~-----~~~Y~--~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 34 YGEGVPDIDPEFLQGCDCSGDCSNPSNCECLQRNGG-----IFAYD--SNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp ESTTSS-TBGGGTS----SSSSTCTTTSHHHCCTSS-----S-SB---TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred cCCCccccccccCccCccCCCCCCCCCCcCccccCc-----ccccc--CCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 456665 2348889999999988899999999977 67887 488887 6789999999999999999997
No 12
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.01 E-value=9.7e-11 Score=108.91 Aligned_cols=148 Identities=28% Similarity=0.476 Sum_probs=100.1
Q ss_pred eEEEcC-CCCCCCCCCCCcccccCCcccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhccCCCceEEec
Q 024518 59 VVFECG-PKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDI 137 (266)
Q Consensus 59 ~~~EC~-~~C~C~~~C~Nr~~q~~~~~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~~~~~y~~~l 137 (266)
..+||. ..|.+...|.|+..-...... +.. +|..+|.+| +|++++..+...+.. ..
T Consensus 288 ~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~~~----~~~~~~~k~------vg~~i~~~e~~~~~~-------~~ 344 (463)
T KOG1081|consen 288 LAYEVHPKVCSAEERCHNQQFSKESYPE------PQK----TAKADIRKG------VGEVIDDKECKARLQ-------RV 344 (463)
T ss_pred hhhhhcccccccccccccchhhhhcccc------cch----hhHHhhhcc------cCcccchhhheeehh-------hh
Confidence 345554 458888888888764433222 222 888889888 899998877652211 00
Q ss_pred chhhhhccCCCceeecccccceeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEE
Q 024518 138 DCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARV 217 (266)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i 217 (266)
.++...+..+- ..+. ...||+...||.+||+||||.||+.-..+... ...++
T Consensus 345 -----------~~~~~~~~~~~------------~~e~-~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~----~~t~~ 396 (463)
T KOG1081|consen 345 -----------KESDLVDFYMV------------FIQK-DRIIDAGPKGNYSRFLNHSCQPNVETEKWQVI----GDTRV 396 (463)
T ss_pred -----------hccchhhhhhh------------hhhc-ccccccccccchhhhhcccCCCceeechhhee----ccccc
Confidence 00000000000 0011 13799999999999999999999887665443 34799
Q ss_pred EEEEcCCCCCCCeeEeecCCCCCCCCCCCCCccCeeeeeCCCCccccc
Q 024518 218 VLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGCRGRL 265 (266)
Q Consensus 218 ~~fA~rdI~~GeELT~dYg~~~~~~~~~~~~~~~~~C~Cgs~~Crg~l 265 (266)
.++|.+.|++|||||++|...-.. ..+.|.|++.+|.+++
T Consensus 397 ~~~a~~~i~~g~e~t~~~n~~~~~--------~~~~~~~~~e~~~~~~ 436 (463)
T KOG1081|consen 397 GLFAPRQIEAGEELTFNYNGNCEG--------NEKRCCCGSENCTETK 436 (463)
T ss_pred ccccccccccchhhhheeeccccC--------CcceEeecccccccCC
Confidence 999999999999999999865322 3478999999998865
No 13
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.84 E-value=2.8e-09 Score=93.56 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhh---ccCCCceEEecchhhhhccCCCceeecccccceeecCCCCCCC
Q 024518 93 KKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNA---CDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDD 169 (266)
Q Consensus 93 ~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~---~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (266)
..|=-|.|++.+.+|+-|-..+|-|.--.+++.. ...++++ .+-... |++
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDF--SvmySt-------Rk~------------------ 188 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDF--SVMYST-------RKR------------------ 188 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCce--eeeeec-------ccc------------------
Confidence 4677899999999999999999988654444422 1122222 110000 000
Q ss_pred cccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCCCCCCC
Q 024518 170 QKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSV 242 (266)
Q Consensus 170 ~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~~~~~~ 242 (266)
...+++ .-|+||||-|.|||.++.- +..++.+-++|||.||||||-=||..+...
T Consensus 189 -----caqLwL------GPaafINHDCrpnCkFvs~-------g~~tacvkvlRDIePGeEITcFYgs~fFG~ 243 (453)
T KOG2589|consen 189 -----CAQLWL------GPAAFINHDCRPNCKFVST-------GRDTACVKVLRDIEPGEEITCFYGSGFFGE 243 (453)
T ss_pred -----hhhhee------ccHHhhcCCCCCCceeecC-------CCceeeeehhhcCCCCceeEEeecccccCC
Confidence 001333 3478999999999998531 235899999999999999999999988653
No 14
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=98.82 E-value=6.5e-09 Score=76.89 Aligned_cols=61 Identities=34% Similarity=0.932 Sum_probs=49.8
Q ss_pred ccCCCCC---CCCCCCCcccCCCCCCCCCcccccccccCCCCCCCcccccCCCeeeeccceEEEcCCCCC
Q 024518 2 QVAKGVK---LPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCG 68 (266)
Q Consensus 2 ~~~~~~~---~~~~~~gC~C~~~C~~~~~C~C~~~~~~~~~~~~~~y~~~~~g~l~~~~~~~~EC~~~C~ 68 (266)
++++|+. .+.+..||+|.++|.+...|.|.+.++. .|+|+ ...+.++....+|||||+.|+
T Consensus 35 ~~~~gv~~~~~~~~~~gC~C~~~C~~~~~C~C~~~~~~-----~~~Y~-~~~~~~~~~~~~IyECn~~C~ 98 (98)
T smart00468 35 IYGQGVPIDRSPSPLVGCSCSGDCSSSNKCECARKNGG-----EFAYE-LNGGLRLKRKPLIYECNSRCS 98 (98)
T ss_pred EcCCCcccccCCCCCCCCcCCCCCCCCCcCCcHhhcCC-----ccCcc-cCCCEEeCCCCEEEcCCCCCC
Confidence 4567775 4569999999999998766999999987 88995 245667778899999999985
No 15
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.64 E-value=4e-08 Score=89.58 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=81.4
Q ss_pred CcccEEEEEeC--CCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhccCCCceEEecchhhhhccCCCceeecccccce
Q 024518 82 LKYRLEVYRTP--KKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSIS 159 (266)
Q Consensus 82 ~~~~l~v~~t~--~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (266)
+...|.|..+. ..|.||++...|++|+--+-|.|+++.. +.++- ....|.+.+-.
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~-~~~~~--~n~~y~W~I~~-------------------- 82 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIAS-IDSKS--ANNRYMWEIFS-------------------- 82 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCccccc-ccccc--ccCcceEEEEe--------------------
Confidence 55678887774 5789999999999999999999998221 11111 12345443310
Q ss_pred eecCCCCCCCcccCCCCceEEeCCC--CCceeeeeccCCCC---CceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEee
Q 024518 160 TIYNSDRPDDQKVENTPDYCIDAGA--VGNVARFINHSCEP---NLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYD 234 (266)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~IDa~~--~Gn~~RfiNHSC~P---N~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~d 234 (266)
.+ ..-++||++. ..|+.||+|=+++. |+.+. .. .-.|.+.|+|+|.+||||.+.
T Consensus 83 ----~d---------~~~~~iDg~d~~~sNWmRYV~~Ar~~eeQNL~A~---Q~-----~~~Ifyrt~r~I~p~eELlVW 141 (396)
T KOG2461|consen 83 ----SD---------NGYEYIDGTDEEHSNWMRYVNSARSEEEQNLLAF---QI-----GENIFYRTIRDIRPNEELLVW 141 (396)
T ss_pred ----CC---------CceEEeccCChhhcceeeeecccCChhhhhHHHH---hc-----cCceEEEecccCCCCCeEEEE
Confidence 00 0127899865 68999999988854 76543 22 247999999999999999999
Q ss_pred cCCCCC
Q 024518 235 YGYELD 240 (266)
Q Consensus 235 Yg~~~~ 240 (266)
|+.++.
T Consensus 142 Y~~e~~ 147 (396)
T KOG2461|consen 142 YGSEYA 147 (396)
T ss_pred eccchH
Confidence 998763
No 16
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.26 E-value=6e-07 Score=86.11 Aligned_cols=127 Identities=28% Similarity=0.545 Sum_probs=88.5
Q ss_pred CCCCcccCCCCCCCCCcccccccccCCCCCCCcccccCCCe--ee--------eccceEEEcCCCCCCCCCCCCcccccC
Q 024518 12 TAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGR--LV--------EAKAVVFECGPKCGCGPDCINRTSQRG 81 (266)
Q Consensus 12 ~~~gC~C~~~C~~~~~C~C~~~~~~~~~~~~~~y~~~~~g~--l~--------~~~~~~~EC~~~C~C~~~C~Nr~~q~~ 81 (266)
+..||+|.+.|.+...|.|.+......+ +.|.....++. +. ...-..|||++.|.|...|.|+++|.+
T Consensus 925 ~~~~~s~d~hp~d~~~~~~~~~~~~~~~--~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v~~~ 1002 (1262)
T KOG1141|consen 925 FCSGCSCDGHPSDASKCECQQLSIEAMK--RCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVVQNN 1002 (1262)
T ss_pred cccccccCCCCcccCcccCCCCChhhhc--CCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhhhcC
Confidence 6789999999999889999986543211 01110000110 00 112357899999999999999999999
Q ss_pred CcccEE--------EEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhh-ccCCCceEEecchh
Q 024518 82 LKYRLE--------VYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNA-CDNENNFIFDIDCL 140 (266)
Q Consensus 82 ~~~~l~--------v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~-~~~~~~y~~~l~~~ 140 (266)
.+++.+ ||++...|||+++..||+.-+||++|+|...+..-+++. ....+.|.-++|..
T Consensus 1003 ~~~~me~~s~~~l~i~~~~~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~ 1070 (1262)
T KOG1141|consen 1003 IKYPMEVSSFNDLQIFKTAQSGWGVREDTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLK 1070 (1262)
T ss_pred CccceeeeecccccccccccccccccccccCCCCcccccccCCCCchhhHHHHhhhhhccccCccchh
Confidence 887654 566777899999999999999999999999877665522 11234555444443
No 17
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=97.33 E-value=9.7e-05 Score=40.25 Aligned_cols=15 Identities=53% Similarity=1.203 Sum_probs=13.7
Q ss_pred CeeeeeCCCCccccc
Q 024518 251 QMVCYCGAEGCRGRL 265 (266)
Q Consensus 251 ~~~C~Cgs~~Crg~l 265 (266)
.+.|+|||++|||+|
T Consensus 2 ~~~C~CGs~~CRG~l 16 (26)
T smart00508 2 KQPCLCGAPNCRGFL 16 (26)
T ss_pred CeeeeCCCcccccee
Confidence 378999999999998
No 18
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=96.49 E-value=0.0009 Score=42.86 Aligned_cols=27 Identities=30% Similarity=0.779 Sum_probs=23.2
Q ss_pred ccceEEEcCCCCCCCCCCCCcccccCC
Q 024518 56 AKAVVFECGPKCGCGPDCINRTSQRGL 82 (266)
Q Consensus 56 ~~~~~~EC~~~C~C~~~C~Nr~~q~~~ 82 (266)
++.+.+||+..|+|+..|+||.+|+..
T Consensus 24 NR~l~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 24 NRMLLIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred HHHHhhhcCCCCCCCcCccCcccccCc
Confidence 455779999889999999999999853
No 19
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=92.31 E-value=0.2 Score=46.76 Aligned_cols=43 Identities=35% Similarity=0.517 Sum_probs=32.6
Q ss_pred eeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCC-eeEeecCCCCCC
Q 024518 191 FINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQ-ELTYDYGYELDS 241 (266)
Q Consensus 191 fiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~Ge-ELT~dYg~~~~~ 241 (266)
++||||.||+.+ .+.. ....+.+..++.+++ ||++.|-...++
T Consensus 208 ~~~hsC~pn~~~--~~~~------~~~~~~~~~~~~~~~~~l~~~y~~~~~~ 251 (482)
T KOG2084|consen 208 LFNHSCFPNISV--IFDG------RGLALLVPAGIDAGEEELTISYTDPLLS 251 (482)
T ss_pred hcccCCCCCeEE--EECC------ceeEEEeecccCCCCCEEEEeecccccC
Confidence 789999999982 2222 356677778888876 999999887765
No 20
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=90.88 E-value=0.19 Score=47.56 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=30.7
Q ss_pred eeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCC
Q 024518 191 FINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGY 237 (266)
Q Consensus 191 fiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~ 237 (266)
+.||++.+. ....... ...+.+++.++|.+||||+++||.
T Consensus 239 ~~NH~~~~~----~~~~~~~---d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEVI----KAGYNQE---DEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchhc----cccccCC---CCcEEEEEeeeecCCCeEEEecCC
Confidence 579999982 2222222 248999999999999999999996
No 21
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=78.47 E-value=1.4 Score=28.93 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=12.0
Q ss_pred EEEEcCCCCCCCeeEe
Q 024518 218 VLFAADNIPPLQELTY 233 (266)
Q Consensus 218 ~~fA~rdI~~GeELT~ 233 (266)
.++|.|||++|+.|+-
T Consensus 3 vvVA~~di~~G~~i~~ 18 (63)
T PF08666_consen 3 VVVAARDIPAGTVITA 18 (63)
T ss_dssp EEEESSTB-TT-BECT
T ss_pred EEEEeCccCCCCEEcc
Confidence 4789999999999964
No 22
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=77.88 E-value=1.9 Score=26.41 Aligned_cols=38 Identities=34% Similarity=1.049 Sum_probs=28.6
Q ss_pred CCCCcccC-CCCCCCCCcccccccccCCCCCCCcccccCCCeeeeccceEEEcCCCCCCCCCCCCcc
Q 024518 12 TAIGCDCR-GNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCINRT 77 (266)
Q Consensus 12 ~~~gC~C~-~~C~~~~~C~C~~~~~~~~~~~~~~y~~~~~g~l~~~~~~~~EC~~~C~C~~~C~Nr~ 77 (266)
...||.|. ..|.. .-|.|++.... |++.|.| ..|.|+.
T Consensus 2 ~~~gC~Ckks~Clk-~YC~Cf~~g~~--------------------------C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 2 KKKGCNCKKSKCLK-LYCECFQAGRF--------------------------CTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCCCcccCcChhh-hhCHHHHCcCc--------------------------CCCCccc-CCCCCcC
Confidence 35789996 56874 57999985544 9999999 6788864
No 23
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=73.60 E-value=2.5 Score=24.27 Aligned_cols=19 Identities=26% Similarity=0.941 Sum_probs=8.8
Q ss_pred CCCCcccCCCCCCCCCccc
Q 024518 12 TAIGCDCRGNCLNSHDCSC 30 (266)
Q Consensus 12 ~~~gC~C~~~C~~~~~C~C 30 (266)
-+..|+|..+|.+..+|+|
T Consensus 20 cqkscscptgcnsddkcpc 38 (40)
T PF11403_consen 20 CQKSCSCPTGCNSDDKCPC 38 (40)
T ss_dssp STTS-SS-TTTTSSTT--T
T ss_pred HhhcCCCCCCCCCCCcCCC
Confidence 3445666666665566665
No 24
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=63.72 E-value=4.1 Score=38.43 Aligned_cols=22 Identities=36% Similarity=1.093 Sum_probs=18.4
Q ss_pred CCCCcccCCCCCCCCCccccccc
Q 024518 12 TAIGCDCRGNCLNSHDCSCAKLN 34 (266)
Q Consensus 12 ~~~gC~C~~~C~~~~~C~C~~~~ 34 (266)
.-.||+|..-|. +.+|+|.+..
T Consensus 306 eeCGCsCr~~Cd-PETCaCSqaG 327 (640)
T KOG3813|consen 306 EECGCSCRGVCD-PETCACSQAG 327 (640)
T ss_pred HhhCCcccceeC-hhhcchhccC
Confidence 468999998886 8899999854
No 25
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.00 E-value=5.4 Score=36.54 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=32.5
Q ss_pred ceeeeeccC---CCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCCCCC
Q 024518 187 NVARFINHS---CEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELD 240 (266)
Q Consensus 187 n~~RfiNHS---C~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~~~~ 240 (266)
-.+-|+||- |..|+.+. ...+-++|.|+|.+|+|+.-.||....
T Consensus 217 p~ad~lNhd~~k~nanl~y~----------~NcL~mva~r~iekgdev~n~dg~~p~ 263 (466)
T KOG1338|consen 217 PIADFLNHDGLKANANLRYE----------DNCLEMVADRNIEKGDEVDNSDGLKPM 263 (466)
T ss_pred chhhhhccchhhcccceecc----------CcceeeeecCCCCCccccccccccCcc
Confidence 356789994 56665432 246688999999999999999985443
No 26
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=62.01 E-value=3.1 Score=38.31 Aligned_cols=36 Identities=33% Similarity=1.028 Sum_probs=30.0
Q ss_pred CCCCcccCC-CCCCCCCcccccccccCCCCCCCcccccCCCeeeeccceEEEcCCCCCCCCCCCC
Q 024518 12 TAIGCDCRG-NCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCIN 75 (266)
Q Consensus 12 ~~~gC~C~~-~C~~~~~C~C~~~~~~~~~~~~~~y~~~~~g~l~~~~~~~~EC~~~C~C~~~C~N 75 (266)
..-||+|+. +|. ..-|.|++.+.. |+.+|.|- .|.|
T Consensus 216 hkkGC~CkkSgCl-KkYCECyQa~vl--------------------------CS~nCkC~-~CkN 252 (406)
T KOG1171|consen 216 HKKGCNCKKSGCL-KKYCECYQAGVL--------------------------CSSNCKCQ-GCKN 252 (406)
T ss_pred hcCCCCCccccch-HHHHHHHhcCCC--------------------------ccccccCc-CCcc
Confidence 678999985 787 467999997766 99999994 6888
No 27
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.24 E-value=5.2 Score=37.23 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=36.1
Q ss_pred eeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCCC
Q 024518 188 VARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYE 238 (266)
Q Consensus 188 ~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~~ 238 (266)
++.-+.||-.||..+...+.-.. .-..-.++-+|++..|||+|-|+.+.
T Consensus 204 fGsrvrHsdePnf~~aPf~fmPq--~vaYsimwp~k~~~tgeE~trDfasg 252 (631)
T KOG2155|consen 204 FGSRVRHSDEPNFRIAPFMFMPQ--NVAYSIMWPTKPVNTGEEITRDFASG 252 (631)
T ss_pred hhhhhccCCCCcceeeeheecch--hcceeEEeeccCCCCchHHHHHHhhc
Confidence 44558999999998877654322 12344578899999999999988653
No 28
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=55.50 E-value=8.2 Score=25.07 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.1
Q ss_pred EEEEcCCCCCCCeeEe
Q 024518 218 VLFAADNIPPLQELTY 233 (266)
Q Consensus 218 ~~fA~rdI~~GeELT~ 233 (266)
.++|.++|.+|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4688999999999986
No 29
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=48.49 E-value=12 Score=36.63 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=15.6
Q ss_pred CCCCcccCCCCCCCCCcccccc
Q 024518 12 TAIGCDCRGNCLNSHDCSCAKL 33 (266)
Q Consensus 12 ~~~gC~C~~~C~~~~~C~C~~~ 33 (266)
+.+.|+=.+.|....+|+|...
T Consensus 500 ~~qpC~hp~~c~c~~~C~C~~n 521 (739)
T KOG1079|consen 500 NYQPCDHPGPCNCGVGCPCIDN 521 (739)
T ss_pred ecCcccCCCCCCCCCCCccccc
Confidence 5677777777744568888863
No 30
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=43.68 E-value=39 Score=24.20 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=14.7
Q ss_pred ceeEEeCCCCCCCCeEE
Q 024518 95 GWAVRSWDFIPAGAPVC 111 (266)
Q Consensus 95 G~Gv~a~~~I~~G~~I~ 111 (266)
-..++|.++|++|+=|.
T Consensus 97 ~~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 97 RIVIFALRDIKPGEELT 113 (116)
T ss_pred EEEEEECCCcCCCCEEe
Confidence 38899999999998765
No 31
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.77 E-value=29 Score=31.26 Aligned_cols=20 Identities=35% Similarity=0.270 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCCCeeEeec
Q 024518 216 RVVLFAADNIPPLQELTYDY 235 (266)
Q Consensus 216 ~i~~fA~rdI~~GeELT~dY 235 (266)
|-.++|.+||++||.||.+=
T Consensus 277 rrsl~a~~di~~G~~lt~~~ 296 (329)
T TIGR03569 277 RKSLVAAKDIKKGEIFTEDN 296 (329)
T ss_pred ceEEEEccCcCCCCEecHHh
Confidence 66789999999999999854
No 32
>PF02068 Metallothio_PEC: Plant PEC family metallothionein; InterPro: IPR000316 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium, nickel, etc. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , , ]. An empirical classification into three classes has been proposed by Fowler and coworkers [] and Kojima []. Members of class I are defined to include polypeptides related in the positions of their cysteines to equine MT-1B, and include mammalian MTs as well as MTs from crustaceans and molluscs. Class II groups MTs from a variety of species, including sea urchins, fungi, insects and cyanobacteria. Class III MTs are atypical polypeptides composed of gamma-glutamylcysteinyl units []. This original classification system has been found to be limited, in the sense that it does not allow clear differentiation of patterns of structural similarities, either between or within classes. Consequently, all class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. This system subdivides the MT superfamily into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects []: e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. The inclusion of a MT within a family presupposes that its amino acid sequence is alignable with that of all members. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range: e.g., Family 1: vertebrate MTs. Family 15 consists of planta MTs. Its members are recognised by the sequence pattern [YFH]-x(5,25)-C-[SKD]-C-[GA]-[SDPAT]-x(0,1)-C-x-[CYF] which yields all plant sequences, but also MTCU_HELPO and the non-MT ITB3_HUMAN. The taxonomic range of the members extends to planta. Planta MTs are 45-84 residue proteins, containing 17 conserved cysteines that bind 5 zinc ions. Generally, there are two Cys-rich regions (domain 1 and domain 3) separated by a Cys-poor region (domain 2) and only the domain 2 contains unusual residues. It is believed that the proteins may have a role in Zn2+ homeostasis during embryogenesis. Family 15 includes the following subfamilies: p1, p2, p2v, p3, pec, p21. ; GO: 0008270 zinc ion binding; PDB: 2L62_A 2KAK_A 2L61_A.
Probab=30.12 E-value=50 Score=22.80 Aligned_cols=46 Identities=26% Similarity=0.793 Sum_probs=21.4
Q ss_pred CCcccCCCCCCCCCcccccccccCCCCCCCcccccCCCeeeeccceEEEcCCCCCCCC-CCCC
Q 024518 14 IGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGP-DCIN 75 (266)
Q Consensus 14 ~gC~C~~~C~~~~~C~C~~~~~~~~~~~~~~y~~~~~g~l~~~~~~~~EC~~~C~C~~-~C~N 75 (266)
.+|.|...|--...|.|......... .....-.|++.|+|.+ +|+.
T Consensus 4 d~CGC~vPCpgG~~CrC~~~~a~~~~----------------~~H~~C~CGEhCgCnPCtC~k 50 (76)
T PF02068_consen 4 DRCGCPVPCPGGTACRCTSSSAGGGG----------------GDHTTCSCGEHCGCNPCTCPK 50 (76)
T ss_dssp GGGSS-SS-SSSTTSCCCS--------------------------S-BTTTB--TTS--TT--
T ss_pred CCcCCCccCCCCCccccccccCCCCC----------------CCcccccCCCcccccCccCCC
Confidence 36788888887788988876333100 1112345888899887 7764
No 33
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=26.83 E-value=80 Score=23.21 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCCCCeeEeecCCC
Q 024518 215 ARVVLFAADNIPPLQELTYDYGYE 238 (266)
Q Consensus 215 ~~i~~fA~rdI~~GeELT~dYg~~ 238 (266)
..+.+.-.+.|..||++|++|..+
T Consensus 75 ktVTLTL~~~V~~Gq~VTVsYt~p 98 (101)
T TIGR02059 75 TTITLTLAQVVEDGDEVTLSYTKN 98 (101)
T ss_pred cEEEEEecccccCCCEEEEEeeCC
Confidence 477888889999999999999653
No 34
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=26.15 E-value=33 Score=25.69 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=13.5
Q ss_pred EEEcCCCCCCCeeEe
Q 024518 219 LFAADNIPPLQELTY 233 (266)
Q Consensus 219 ~fA~rdI~~GeELT~ 233 (266)
++|.++|++||-|+-
T Consensus 2 ~Va~r~I~~G~~i~~ 16 (122)
T TIGR03170 2 VVAKRPLKRGEVISP 16 (122)
T ss_pred EEECcccCCCCCcCH
Confidence 689999999999876
No 35
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=26.08 E-value=23 Score=33.56 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=34.3
Q ss_pred EeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCe
Q 024518 180 IDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQE 230 (266)
Q Consensus 180 IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeE 230 (266)
.++...|+..++++|++.|+.....+... ..+++..++.+-++.++-
T Consensus 184 ~~~~~~g~~~~~l~~~~~~~s~~~~~~~~----~~~r~~~~~~q~~~~~~~ 230 (463)
T KOG1081|consen 184 RVFPYEGQSSKLIPHSKKPASTMSEKIKE----AKARFGKLKAQWEAGIKQ 230 (463)
T ss_pred hhhhccchHHHhhhhccccchhhhhhhhc----ccchhhhcccchhhccch
Confidence 44444899999999999998776655444 346777777777776665
No 36
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.55 E-value=45 Score=30.06 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCCCeeEeec
Q 024518 216 RVVLFAADNIPPLQELTYDY 235 (266)
Q Consensus 216 ~i~~fA~rdI~~GeELT~dY 235 (266)
|-.++|.|||++||-||.+-
T Consensus 275 rrsl~a~~di~~G~~it~~~ 294 (327)
T TIGR03586 275 RRSLYVVKDIKKGETFTEEN 294 (327)
T ss_pred eEEEEEccCcCCCCEecHHh
Confidence 66789999999999999864
No 37
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.80 E-value=55 Score=30.25 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=22.2
Q ss_pred CCceeEEeCCCCCCCCeEEEeeeEE
Q 024518 93 KKGWAVRSWDFIPAGAPVCEYIGVL 117 (266)
Q Consensus 93 ~kG~Gv~a~~~I~~G~~I~ey~Gev 117 (266)
..|.|+.|++.|++|+.+..|.+.-
T Consensus 39 ~~G~g~vAtesIkkgE~Lf~~prds 63 (466)
T KOG1338|consen 39 IAGAGIVATESIKKGESLFAYPRDS 63 (466)
T ss_pred hcccceeeehhhcCCceEEEecCcc
Confidence 3599999999999999999998854
No 38
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=21.94 E-value=67 Score=18.86 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.4
Q ss_pred EEEEEcCCCCCCCeeEe
Q 024518 217 VVLFAADNIPPLQELTY 233 (266)
Q Consensus 217 i~~fA~rdI~~GeELT~ 233 (266)
+.+|..+||.+|..||=
T Consensus 1 ~y~fvrkdit~~ntltk 17 (41)
T PF13121_consen 1 MYFFVRKDITKDNTLTK 17 (41)
T ss_pred CEEEEEeeccCCCeeeh
Confidence 35788899999888873
Done!