Your job contains 1 sequence.
>024519
MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHRKARTTSAISK
AGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGV
GLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFF
EGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV
PKTFRIVENLDLPLAEGCPKLGVHEP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024519
(266 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037733 - symbol:PDF1A "peptide deformylase 1A... 847 1.3e-84 1
ZFIN|ZDB-GENE-050913-42 - symbol:pdf "peptide deformylase... 403 1.5e-37 1
FB|FBgn0051373 - symbol:CG31373 species:7227 "Drosophila ... 372 2.8e-34 1
UNIPROTKB|F1S391 - symbol:PDF "Uncharacterized protein" s... 353 2.9e-32 1
RGD|1582894 - symbol:Pdf "peptide deformylase (mitochondr... 350 6.0e-32 1
RGD|2321990 - symbol:LOC100363967 "peptide deformylase-li... 350 6.0e-32 1
UNIPROTKB|F1N5S7 - symbol:PDF "Uncharacterized protein" s... 348 9.8e-32 1
UNIPROTKB|J9NUA4 - symbol:PDF "Uncharacterized protein" s... 342 4.2e-31 1
UNIPROTKB|Q9HBH1 - symbol:PDF "Peptide deformylase, mitoc... 327 1.6e-29 1
FB|FBgn0051278 - symbol:CG31278 species:7227 "Drosophila ... 314 3.9e-28 1
UNIPROTKB|Q9KN16 - symbol:def2 "Peptide deformylase 2" sp... 183 2.3e-22 2
TIGR_CMR|VC_A0150 - symbol:VC_A0150 "polypeptide deformyl... 183 2.3e-22 2
UNIPROTKB|Q9KVU3 - symbol:def1 "Peptide deformylase 1" sp... 169 6.1e-21 2
TIGR_CMR|VC_0046 - symbol:VC_0046 "polypeptide deformylas... 169 6.1e-21 2
TIGR_CMR|GSU_3456 - symbol:GSU_3456 "polypeptide deformyl... 244 1.0e-20 1
TIGR_CMR|SPO_3219 - symbol:SPO_3219 "peptide deformylase"... 238 4.4e-20 1
TIGR_CMR|CHY_1484 - symbol:CHY_1484 "peptide deformylase"... 146 7.1e-20 2
TIGR_CMR|SO_2530 - symbol:SO_2530 "polypeptide deformylas... 169 5.8e-19 2
TIGR_CMR|CPS_0407 - symbol:CPS_0407 "polypeptide deformyl... 168 1.0e-18 2
TIGR_CMR|ECH_0073 - symbol:ECH_0073 "peptide deformylase"... 223 1.7e-18 1
TAIR|locus:2222667 - symbol:PDF1B "peptide deformylase 1B... 220 3.6e-18 1
UNIPROTKB|P96275 - symbol:def "Peptide deformylase" speci... 208 6.7e-17 1
TIGR_CMR|CPS_0020 - symbol:CPS_0020 "polypeptide deformyl... 207 8.6e-17 1
TIGR_CMR|GSU_0129 - symbol:GSU_0129 "polypeptide deformyl... 199 6.0e-16 1
TIGR_CMR|NSE_0392 - symbol:NSE_0392 "peptide deformylase"... 197 9.8e-16 1
GENEDB_PFALCIPARUM|PFI0380c - symbol:PFI0380c "formylmeth... 196 1.3e-15 1
UNIPROTKB|Q8I372 - symbol:PFI0380c "Formylmethionine defo... 196 1.3e-15 1
TIGR_CMR|BA_4005 - symbol:BA_4005 "polypeptide deformylas... 124 1.3e-15 2
TIGR_CMR|CJE_0184 - symbol:CJE_0184 "peptide deformylase"... 194 2.0e-15 1
TIGR_CMR|APH_1012 - symbol:APH_1012 "putative polypeptide... 186 1.4e-14 1
UNIPROTKB|P0A6K3 - symbol:def species:83333 "Escherichia ... 182 3.8e-14 1
TIGR_CMR|APH_1372 - symbol:APH_1372 "peptide deformylase"... 179 7.9e-14 1
TIGR_CMR|BA_4187 - symbol:BA_4187 "polypeptide deformylas... 165 3.0e-12 1
TIGR_CMR|SO_1062 - symbol:SO_1062 "polypeptide deformylas... 165 3.0e-12 1
TIGR_CMR|SPO_3217 - symbol:SPO_3217 "peptide deformylase"... 162 6.9e-12 1
TIGR_CMR|DET_0760 - symbol:DET_0760 "peptide deformylase"... 161 9.0e-12 1
TIGR_CMR|CBU_1879 - symbol:CBU_1879 "polypeptide deformyl... 153 7.9e-11 1
DICTYBASE|DDB_G0288157 - symbol:DDB_G0288157 "Peptide def... 105 3.7e-10 2
TIGR_CMR|CBU_0993 - symbol:CBU_0993 "peptide deformylase"... 147 3.9e-10 1
TIGR_CMR|ECH_0939 - symbol:ECH_0939 "putative polypeptide... 145 6.6e-10 1
TIGR_CMR|SPO_3218 - symbol:SPO_3218 "peptide deformylase"... 142 1.4e-09 1
TIGR_CMR|SO_0032 - symbol:SO_0032 "polypeptide deformylas... 136 6.9e-09 1
>TAIR|locus:2037733 [details] [associations]
symbol:PDF1A "peptide deformylase 1A" species:3702
"Arabidopsis thaliana" [GO:0005506 "iron ion binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006412
"translation" evidence=ISS] [GO:0042586 "peptide deformylase
activity" evidence=IEA;ISS;IDA] [GO:0043686 "co-translational
protein modification" evidence=IDA] [GO:0009505 "plant-type cell
wall" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0009507 GO:GO:0009570
GO:GO:0005506 GO:GO:0006412 EMBL:AC007591 GO:GO:0009505
EMBL:AF250959 EMBL:AF361861 EMBL:AY129485 IPI:IPI00534874
PIR:E86288 RefSeq:NP_563974.1 UniGene:At.11423 UniGene:At.19791
PDB:1ZXZ PDB:1ZY0 PDB:1ZY1 PDBsum:1ZXZ PDBsum:1ZY0 PDBsum:1ZY1
ProteinModelPortal:Q9FV53 SMR:Q9FV53 STRING:Q9FV53 PaxDb:Q9FV53
PRIDE:Q9FV53 EnsemblPlants:AT1G15390.1 GeneID:838109
KEGG:ath:AT1G15390 TAIR:At1g15390 eggNOG:COG0242
HOGENOM:HOG000243508 InParanoid:Q9FV53 KO:K01462 OMA:LTSGEGC
ProtClustDB:CLSN2687814 SABIO-RK:Q9FV53 ChEMBL:CHEMBL1075041
EvolutionaryTrace:Q9FV53 Genevestigator:Q9FV53 GermOnline:AT1G15390
GO:GO:0042586 GO:GO:0043686 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079 Uniprot:Q9FV53
Length = 269
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 175/265 (66%), Positives = 208/265 (78%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHR-KARTTSAIS 59
ME + R S+ LP+ SA + R VS P S+ + + ++S++S
Sbjct: 11 METLFRVSLRLLPV--------SAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLS 62
Query: 60 -KAGWLLGLGQNKK-AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSA 117
KAGWLLGLG+ KK LPEIV +GDPVLHE AREVDPGEIGSERIQ IIDDM+KVMR A
Sbjct: 63 TKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLA 122
Query: 118 PGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA 177
PGVGLAAPQIGVPLRIIVLEDTKEYISY KEEI A +RR FDL++++NP LK++S++ A
Sbjct: 123 PGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKA 182
Query: 178 LFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
LFFEGCLSV+G+RA VERYL++ VTG DR G+ I+V+A+GWQARILQHECDHLDG LYVD
Sbjct: 183 LFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVD 242
Query: 238 KMVPKTFRIVENLDLPLAEGCPKLG 262
KMVP+TFR V+NLDLPLAEGCPKLG
Sbjct: 243 KMVPRTFRTVDNLDLPLAEGCPKLG 267
>ZFIN|ZDB-GENE-050913-42 [details] [associations]
symbol:pdf "peptide deformylase (mitochondrial)"
species:7955 "Danio rerio" [GO:0042586 "peptide deformylase
activity" evidence=IEA;ISS] [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0031365 "N-terminal protein amino
acid modification" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0018206 "peptidyl-methionine modification"
evidence=ISS] HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 ZFIN:ZDB-GENE-050913-42 GO:GO:0005739 GO:GO:0005506
GO:GO:0008284 GO:GO:0031365 GO:GO:0018206 eggNOG:COG0242
HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 CTD:64146
HOVERGEN:HBG018948 OMA:MDSRTFT GeneTree:ENSGT00390000018698
EMBL:CT025859 EMBL:BC097196 IPI:IPI00513642 RefSeq:NP_001028902.1
UniGene:Dr.87399 STRING:Q4V8U4 Ensembl:ENSDART00000010129
GeneID:619248 KEGG:dre:619248 InParanoid:Q4V8U4 OrthoDB:EOG49KFRR
NextBio:20901467 Uniprot:Q4V8U4
Length = 247
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 92/235 (39%), Positives = 129/235 (54%)
Query: 11 HLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHRKARTTSAISKAGWLLGLGQN 70
HL + H+ S+P+ R L+ P +N T SP + S ++ Q
Sbjct: 10 HLVLRSQSSHVHSSPV-----RILL--PLSANTCTASPRTHSTNVKVRSYLQYMKRKVQG 62
Query: 71 KKAK-LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
+ Q GDPVL A EV+PG I +Q +I +VKVMR VGL+APQIGV
Sbjct: 63 SPVPPYNHVCQVGDPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIGV 122
Query: 130 PLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
PLRI+ LE K+ + S ++A L++ +NP+L+ RT +F E C S++GY
Sbjct: 123 PLRILALEYPKKMLEESSTASVEARGLVAVPLMIFINPQLRVLDGRTVIFQEACESISGY 182
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
A V RY+ +EV+GL+ + + A+GW ARILQHE DHL+G LY+D M KTF
Sbjct: 183 SASVPRYVSVEVSGLNEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHMDSKTF 237
>FB|FBgn0051373 [details] [associations]
symbol:CG31373 species:7227 "Drosophila melanogaster"
[GO:0042586 "peptide deformylase activity" evidence=ISS]
[GO:0005506 "iron ion binding" evidence=IEA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
EMBL:AE014297 GO:GO:0005506 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 OMA:LIGRWKR RefSeq:NP_731495.1 UniGene:Dm.26560
HSSP:P96113 ProteinModelPortal:Q8INL3 SMR:Q8INL3 MINT:MINT-970779
STRING:Q8INL3 PRIDE:Q8INL3 EnsemblMetazoa:FBtr0082318 GeneID:318700
KEGG:dme:Dmel_CG31373 UCSC:CG31373-RA FlyBase:FBgn0051373
GeneTree:ENSGT00390000018698 InParanoid:Q8INL3 OrthoDB:EOG4F4QT0
PhylomeDB:Q8INL3 GenomeRNAi:318700 NextBio:845923
ArrayExpress:Q8INL3 Bgee:Q8INL3 Uniprot:Q8INL3
Length = 196
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 83/189 (43%), Positives = 115/189 (60%)
Query: 80 QAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
Q GDPVL + A EV P +I S I IID MVKV+R VG+AAPQ+G+PLRIIV+E
Sbjct: 11 QIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVME-F 69
Query: 140 KEYISYQSKEEIKAFDRRPFDLL---MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+E Q K EI ++ R +L + +NP+L+ S + EGC+SV GY A VERY
Sbjct: 70 REGKQEQFKPEI--YEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERY 127
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+ + G+ + G P +++ GW ARI QHE DHL+GT+Y+D+M TF + + AE
Sbjct: 128 DKVRIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMDLSTFNCILWEQINAAE 187
Query: 257 GCPKLGVHE 265
G + H+
Sbjct: 188 GRSAIWFHK 196
>UNIPROTKB|F1S391 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042586 "peptide deformylase activity" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0018206 "peptidyl-methionine modification"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 OMA:MDSRTFT
GeneTree:ENSGT00390000018698 EMBL:FP015939
Ensembl:ENSSSCT00000003055 Uniprot:F1S391
Length = 221
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 71/171 (41%), Positives = 103/171 (60%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P + Q GDP L A V+P ++ +Q ++ +V+VMR VGL+APQ+GVPL+++
Sbjct: 43 PRVCQVGDPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLA 102
Query: 136 LE--DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
LE D + EI+ + PF L + +NP L+ R F EGC SV G+ A V
Sbjct: 103 LEFPDALFHACAPRLREIRQME--PFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACV 160
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
R+ ++++GLD G+P+ A+GW ARI+QHE DHL G L++DKM KTF
Sbjct: 161 PRFQAVQISGLDPRGEPVVWQASGWAARIIQHEMDHLQGLLFIDKMDSKTF 211
>RGD|1582894 [details] [associations]
symbol:Pdf "peptide deformylase (mitochondrial)" species:10116
"Rattus norvegicus" [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO] [GO:0018206 "peptidyl-methionine modification"
evidence=ISO] [GO:0031365 "N-terminal protein amino acid
modification" evidence=ISO] [GO:0042586 "peptide deformylase
activity" evidence=ISO] REFSEQ:XM_001073696 Ncbi:XP_001073696
Length = 231
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 69/169 (40%), Positives = 108/169 (63%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+P ++ +Q +++ +V+VMR VGL+APQ+GVPL+++VLE
Sbjct: 55 VCQVGDPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLE 114
Query: 138 -DTKEYISYQSK-EEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ + ++ + E++ + PF L +++NP L+ R F EGC SV G+ A V R
Sbjct: 115 FPDRLFRAFSPRLRELRQME--PFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPR 172
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ ++++GLD G+P+ A+GW ARI+QHE DHL G L++DKM TF
Sbjct: 173 FQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKMDSGTF 221
>RGD|2321990 [details] [associations]
symbol:LOC100363967 "peptide deformylase-like protein-like"
species:10116 "Rattus norvegicus" [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0018206 "peptidyl-methionine modification" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0042586 "peptide deformylase activity"
evidence=IEA] HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 RGD:2321990 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
GeneTree:ENSGT00390000018698 IPI:IPI00363538 PRIDE:F1LVY9
Ensembl:ENSRNOT00000036634 Uniprot:F1LVY9
Length = 255
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 69/169 (40%), Positives = 108/169 (63%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+P ++ +Q +++ +V+VMR VGL+APQ+GVPL+++VLE
Sbjct: 79 VCQVGDPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLE 138
Query: 138 -DTKEYISYQSK-EEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ + ++ + E++ + PF L +++NP L+ R F EGC SV G+ A V R
Sbjct: 139 FPDRLFRAFSPRLRELRQME--PFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPR 196
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ ++++GLD G+P+ A+GW ARI+QHE DHL G L++DKM TF
Sbjct: 197 FQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKMDSGTF 245
>UNIPROTKB|F1N5S7 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042586 "peptide deformylase activity" evidence=IEA]
[GO:0031365 "N-terminal protein amino acid modification"
evidence=IEA] [GO:0018206 "peptidyl-methionine modification"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0008284
GO:GO:0031365 GO:GO:0018206 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420 OMA:MDSRTFT
GeneTree:ENSGT00390000018698 EMBL:DAAA02046699 IPI:IPI00712973
Ensembl:ENSBTAT00000002176 Uniprot:F1N5S7
Length = 230
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 68/169 (40%), Positives = 101/169 (59%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P + Q GDP L A V+P ++ +Q +++ +V+VMR VGL+APQ+GVPL+++
Sbjct: 52 PRVCQVGDPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLA 111
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LE + + +A PF L + +NP L+ R F EGC SV G+ A V R
Sbjct: 112 LEFPETLFRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPR 171
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ ++++GLD G+ + A+GW ARI+QHE DHL G L++DKM KTF
Sbjct: 172 FQAVQISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSKTF 220
>UNIPROTKB|J9NUA4 [details] [associations]
symbol:PDF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042586 "peptide deformylase activity"
evidence=IEA] [GO:0005506 "iron ion binding" evidence=IEA]
HAMAP:MF_00163 InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 GeneTree:ENSGT00390000018698
EMBL:AAEX03004108 Ensembl:ENSCAFT00000044172 OMA:EGCESIR
Uniprot:J9NUA4
Length = 245
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 66/169 (39%), Positives = 100/169 (59%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P + Q GDP L A V+P ++ ++Q ++ +V+VMR VGL+APQ+GVPL+++
Sbjct: 67 PHVCQVGDPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLA 126
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
E + + + PF L +++NP L+ R F EGC SV G+ A V R
Sbjct: 127 FEFPEALFRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPR 186
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ ++++GLD G+ + A+GW ARI+QHE DHL G L++DKM KTF
Sbjct: 187 FQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSKTF 235
>UNIPROTKB|Q9HBH1 [details] [associations]
symbol:PDF "Peptide deformylase, mitochondrial"
species:9606 "Homo sapiens" [GO:0005506 "iron ion binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IMP] [GO:0018206 "peptidyl-methionine
modification" evidence=IDA] [GO:0031365 "N-terminal protein amino
acid modification" evidence=IDA] [GO:0042586 "peptide deformylase
activity" evidence=IDA] InterPro:IPR000181 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005739 GO:GO:0005506 GO:GO:0006412
GO:GO:0008284 GO:GO:0031365 GO:GO:0018206 UniGene:Hs.130849
GermOnline:ENSG00000157312 HOGENOM:HOG000243508 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 EMBL:AF239156 EMBL:AF322879
EMBL:BC019912 IPI:IPI00007060 RefSeq:NP_071736.1 PDB:3G5K PDB:3G5P
PDBsum:3G5K PDBsum:3G5P ProteinModelPortal:Q9HBH1 SMR:Q9HBH1
STRING:Q9HBH1 DMDM:17433054 PeptideAtlas:Q9HBH1 PRIDE:Q9HBH1
Ensembl:ENST00000288022 GeneID:64146 KEGG:hsa:64146 UCSC:uc002ewx.1
CTD:64146 GeneCards:GC16M069362 H-InvDB:HIX0013187 HGNC:HGNC:30012
neXtProt:NX_Q9HBH1 PharmGKB:PA144596394 HOVERGEN:HBG018948
InParanoid:Q9HBH1 OMA:MDSRTFT SABIO-RK:Q9HBH1 BindingDB:Q9HBH1
ChEMBL:CHEMBL4647 EvolutionaryTrace:Q9HBH1 GenomeRNAi:64146
NextBio:66046 Bgee:Q9HBH1 Genevestigator:Q9HBH1 Uniprot:Q9HBH1
Length = 243
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 67/168 (39%), Positives = 101/168 (60%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVP +++ LE
Sbjct: 67 VCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALE 126
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + + +A + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 127 -LPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF
Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 233
>FB|FBgn0051278 [details] [associations]
symbol:CG31278 species:7227 "Drosophila melanogaster"
[GO:0042586 "peptide deformylase activity" evidence=ISS]
[GO:0005506 "iron ion binding" evidence=IEA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
EMBL:AE014297 GO:GO:0005506 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 OMA:MDSRTFT GeneTree:ENSGT00390000018698
OrthoDB:EOG4F4QT0 EMBL:BT015988 RefSeq:NP_731494.1 UniGene:Dm.17011
HSSP:P27251 SMR:Q9VGY2 STRING:Q9VGY2 EnsemblMetazoa:FBtr0082319
GeneID:41282 KEGG:dme:Dmel_CG31278 UCSC:CG31278-RA
FlyBase:FBgn0051278 InParanoid:Q9VGY2 GenomeRNAi:41282
NextBio:823085 Uniprot:Q9VGY2
Length = 238
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 76/186 (40%), Positives = 102/186 (54%)
Query: 63 WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
W L ++ LP Q GDPVL + A V + S I+ I++ MVKV+R
Sbjct: 33 WYQHLWTTERTNLPPYNHFTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDC 92
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI-KAFDRRPFDLLMILNPKLKKKSDRTAL 178
VG+AAPQIGV LRII +E K I + E + +A L + +NP L +
Sbjct: 93 VGIAAPQIGVSLRIIAME-FKGRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKLK 151
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
EGC+SV GY A VER+ +++TGLD+ G ++ +GW ARI QHE DHL+G LY D
Sbjct: 152 HPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDH 211
Query: 239 MVPKTF 244
M TF
Sbjct: 212 MDRSTF 217
>UNIPROTKB|Q9KN16 [details] [associations]
symbol:def2 "Peptide deformylase 2" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0006464 eggNOG:COG0242 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK12846 GO:GO:0008463 PIR:C82494 RefSeq:NP_232550.1
PDB:3QU1 PDBsum:3QU1 ProteinModelPortal:Q9KN16 SMR:Q9KN16
DNASU:2612555 GeneID:2612555 KEGG:vch:VCA0150 PATRIC:20084873
OMA:DDSNEGC EvolutionaryTrace:Q9KN16 Uniprot:Q9KN16
Length = 168
Score = 183 (69.5 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 162 LMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQAR 221
L+++NPK+ S++ + EGCLSV Y A VERY + V LDR+G+P++++ + + A
Sbjct: 71 LVLINPKVVSGSNKE-MGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAI 129
Query: 222 ILQHECDHLDGTLYVDKMVP 241
++QHE DHL G L++D + P
Sbjct: 130 VMQHEIDHLSGNLFIDYLSP 149
Score = 91 (37.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP-GVGLAAPQIGVPLRIIV 135
EI+ A DP L +++V ++ S +Q +IDD++ + + G+GLAAPQ+G I+V
Sbjct: 5 EILTAPDPRLRVQSKQVT--DVAS--VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVV 60
Query: 136 LE 137
++
Sbjct: 61 ID 62
>TIGR_CMR|VC_A0150 [details] [associations]
symbol:VC_A0150 "polypeptide deformylase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0006464 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK12846
GO:GO:0008463 PIR:C82494 RefSeq:NP_232550.1 PDB:3QU1 PDBsum:3QU1
ProteinModelPortal:Q9KN16 SMR:Q9KN16 DNASU:2612555 GeneID:2612555
KEGG:vch:VCA0150 PATRIC:20084873 OMA:DDSNEGC
EvolutionaryTrace:Q9KN16 Uniprot:Q9KN16
Length = 168
Score = 183 (69.5 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 162 LMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQAR 221
L+++NPK+ S++ + EGCLSV Y A VERY + V LDR+G+P++++ + + A
Sbjct: 71 LVLINPKVVSGSNKE-MGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAI 129
Query: 222 ILQHECDHLDGTLYVDKMVP 241
++QHE DHL G L++D + P
Sbjct: 130 VMQHEIDHLSGNLFIDYLSP 149
Score = 91 (37.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP-GVGLAAPQIGVPLRIIV 135
EI+ A DP L +++V ++ S +Q +IDD++ + + G+GLAAPQ+G I+V
Sbjct: 5 EILTAPDPRLRVQSKQVT--DVAS--VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVV 60
Query: 136 LE 137
++
Sbjct: 61 ID 62
>UNIPROTKB|Q9KVU3 [details] [associations]
symbol:def1 "Peptide deformylase 1" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006464 eggNOG:COG0242 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 OMA:EMDQYQE PIR:A82373 RefSeq:NP_229705.1
PDB:3FWX PDBsum:3FWX ProteinModelPortal:Q9KVU3 SMR:Q9KVU3
DNASU:2614445 GeneID:2614445 KEGG:vch:VC0046 PATRIC:20079140
EvolutionaryTrace:Q9KVU3 GO:GO:0008463 Uniprot:Q9KVU3
Length = 169
Score = 169 (64.5 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 162 LMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQAR 221
++++NP++ +K + EGCLSV G RA+V R ++ V LDR+GQ + DA A
Sbjct: 71 MVLINPEIIEKRGEDGIE-EGCLSVPGARALVPRAAEVTVKALDRNGQEYQFDADDLLAI 129
Query: 222 ILQHECDHLDGTLYVDKMVP-KTFRIVENLD 251
+QHE DHL G L+VD + P K RI E L+
Sbjct: 130 CVQHELDHLAGKLFVDYLSPLKRNRIKEKLE 160
Score = 92 (37.4 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
P E + IQ I+DDM++ M + G+GLAA Q+ + RI+V++
Sbjct: 20 PVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVID 62
>TIGR_CMR|VC_0046 [details] [associations]
symbol:VC_0046 "polypeptide deformylase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006464 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150 OMA:EMDQYQE
PIR:A82373 RefSeq:NP_229705.1 PDB:3FWX PDBsum:3FWX
ProteinModelPortal:Q9KVU3 SMR:Q9KVU3 DNASU:2614445 GeneID:2614445
KEGG:vch:VC0046 PATRIC:20079140 EvolutionaryTrace:Q9KVU3
GO:GO:0008463 Uniprot:Q9KVU3
Length = 169
Score = 169 (64.5 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 162 LMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQAR 221
++++NP++ +K + EGCLSV G RA+V R ++ V LDR+GQ + DA A
Sbjct: 71 MVLINPEIIEKRGEDGIE-EGCLSVPGARALVPRAAEVTVKALDRNGQEYQFDADDLLAI 129
Query: 222 ILQHECDHLDGTLYVDKMVP-KTFRIVENLD 251
+QHE DHL G L+VD + P K RI E L+
Sbjct: 130 CVQHELDHLAGKLFVDYLSPLKRNRIKEKLE 160
Score = 92 (37.4 bits), Expect = 6.1e-21, Sum P(2) = 6.1e-21
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
P E + IQ I+DDM++ M + G+GLAA Q+ + RI+V++
Sbjct: 20 PVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVID 62
>TIGR_CMR|GSU_3456 [details] [associations]
symbol:GSU_3456 "polypeptide deformylase" species:243231
"Geobacter sulfurreducens PCA" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:NP_954496.1 ProteinModelPortal:Q746R2
GeneID:2686601 KEGG:gsu:GSU3456 PATRIC:22029771 OMA:SAICAPQ
ProtClustDB:CLSK829292 BioCyc:GSUL243231:GH27-3425-MONOMER
Uniprot:Q746R2
Length = 169
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 63/165 (38%), Positives = 97/165 (58%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG-VGLAAPQIGVPLRIIVL 136
I+Q PVL + V + E I+ +IDD+++ MR PG VG+AAPQIGV LR+ V+
Sbjct: 6 ILQYPHPVLKKVCHTVTAID---EAIRGLIDDLIETMREGPGSVGVAAPQIGVTLRVCVI 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + S K+ LL+++NP++ +S A+ EGC+SV Y VER
Sbjct: 63 DVSG---SRHGKDNNHG-------LLLMVNPEIVDRSGN-AVMREGCMSVPDYTGDVERS 111
Query: 197 LDIEVTGLD-RDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
++ V LD DG ++ A+G++A +QHE DHLDG L++D++V
Sbjct: 112 TEVRVRFLDGADGSEREITASGFEAVAIQHEMDHLDGILFLDRIV 156
>TIGR_CMR|SPO_3219 [details] [associations]
symbol:SPO_3219 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168422.1 ProteinModelPortal:Q5LNI5
GeneID:3193782 KEGG:sil:SPO3219 PATRIC:23379885 OMA:HERVVVK
ProtClustDB:CLSK934098 Uniprot:Q5LNI5
Length = 172
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 59/142 (41%), Positives = 83/142 (58%)
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
S+ ++ + DDM++ M APG+GLAAPQIGV R+IVL+ KE E A RP
Sbjct: 24 SDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVLDCVKE-------ESAPA---RP- 72
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
L++ NP++ SD T ++ EGCLS+ A V R ++V +DRDG+ G
Sbjct: 73 --LVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGKLQSETFDGLW 130
Query: 220 ARILQHECDHLDGTLYVDKMVP 241
A +QHE DHLDG L++D + P
Sbjct: 131 ATCVQHEIDHLDGKLFIDYLKP 152
>TIGR_CMR|CHY_1484 [details] [associations]
symbol:CHY_1484 "peptide deformylase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150
RefSeq:YP_360316.1 HSSP:P0A6K3 ProteinModelPortal:Q3AC18
STRING:Q3AC18 GeneID:3727424 KEGG:chy:CHY_1484 PATRIC:21276099
OMA:YVKVRAQ BioCyc:CHYD246194:GJCN-1483-MONOMER Uniprot:Q3AC18
Length = 152
Score = 146 (56.5 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 161 LLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQA 220
L+ ++NP++ + S EGCLSV G + V R + V GL+R G+ I + A G A
Sbjct: 67 LIELINPEIIEVSGEEK-DIEGCLSVPGVQGEVVRAKKVTVKGLNRYGEEIVIPAEGLLA 125
Query: 221 RILQHECDHLDGTLYVDK 238
R QHE DHL+G L+V+K
Sbjct: 126 RAFQHEIDHLNGILFVEK 143
Score = 110 (43.8 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++V+ GDP+L E A+ + EI + I ++++M M + GVGLAAPQIGV R IV+
Sbjct: 5 KVVEIGDPILKEIAKPIK--EI-TPNIIKLLENMADTMYAYNGVGLAAPQIGVSKRAIVV 61
Query: 137 E 137
+
Sbjct: 62 D 62
>TIGR_CMR|SO_2530 [details] [associations]
symbol:SO_2530 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK12846
RefSeq:NP_718116.1 ProteinModelPortal:Q8EE60 SMR:Q8EE60
GeneID:1170239 KEGG:son:SO_2530 PATRIC:23524691 OMA:NEGCISV
Uniprot:Q8EE60
Length = 163
Score = 169 (64.5 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 32/78 (41%), Positives = 54/78 (69%)
Query: 162 LMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQAR 221
L+++NP++ +KS + EGCLS+ GYRA V R+ ++VT LDR G+ I+++ + A
Sbjct: 71 LVLVNPEIVEKSGEY-VGEEGCLSIPGYRAKVTRFEKVKVTALDRQGKAIEIETDDFLAI 129
Query: 222 ILQHECDHLDGTLYVDKM 239
+LQHE DHL G ++++ +
Sbjct: 130 VLQHEIDHLHGKVFIEHL 147
Score = 73 (30.8 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 101 ERIQNIIDDMVKVM-RSAPGVGLAAPQIGVPLRIIVLE 137
E IQ IDD+++ M + G+GLA+ Q+G +IV++
Sbjct: 25 EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVIVID 62
>TIGR_CMR|CPS_0407 [details] [associations]
symbol:CPS_0407 "polypeptide deformylase" species:167879
"Colwellia psychrerythraea 34H" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK12846
RefSeq:YP_267165.1 ProteinModelPortal:Q489U9 SMR:Q489U9
STRING:Q489U9 GeneID:3521653 KEGG:cps:CPS_0407 PATRIC:21464175
OMA:DVERFTH BioCyc:CPSY167879:GI48-502-MONOMER Uniprot:Q489U9
Length = 166
Score = 168 (64.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 35/87 (40%), Positives = 55/87 (63%)
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
D R +LL+++NP + + TA EGCLS+ GY A VER+ + V LDR+G+ + +
Sbjct: 65 DNRD-ELLVLVNPVITH-GEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNGKELTIT 122
Query: 215 ATGWQARILQHECDHLDGTLYVDKMVP 241
+ + A ++QHE DHL G L++D + P
Sbjct: 123 SDEFLAIVMQHEIDHLKGKLFIDYLSP 149
Score = 72 (30.4 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP-GVGLAAPQIGVPLRIIVL 136
I+ A + L E A+ V ++ +IQ +IDD+++ M G+GLAA Q+G ++V+
Sbjct: 6 ILTAPNDKLIEQAKPVS--DVS--QIQMLIDDLIETMYDTEDGIGLAATQVGRSEAVVVI 61
Query: 137 E 137
+
Sbjct: 62 D 62
>TIGR_CMR|ECH_0073 [details] [associations]
symbol:ECH_0073 "peptide deformylase" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:YP_506903.1 PDB:3OCA
PDB:3U04 PDBsum:3OCA PDBsum:3U04 ProteinModelPortal:Q2GI30
STRING:Q2GI30 GeneID:3927935 KEGG:ech:ECH_0073 PATRIC:20575709
OMA:AEWHELE ProtClustDB:CLSK749063
BioCyc:ECHA205920:GJNR-73-MONOMER EvolutionaryTrace:Q2GI30
Uniprot:Q2GI30
Length = 188
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 59/164 (35%), Positives = 89/164 (54%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV D L + EV+ + + I+ ++DDM + M + G+GLAA Q+GV RI+V+
Sbjct: 6 IVTVPDKRLSLCSEEVEKVD---QSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMN 62
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLL----MILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+E+ + E ++ D+ ++L I+NPK+ S EGCLSV GY
Sbjct: 63 VPEEFEDSEDIENVE--DKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 120
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYV 236
+ R I V LD +G + A GW AR LQHE DHL+GT+++
Sbjct: 121 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFL 164
>TAIR|locus:2222667 [details] [associations]
symbol:PDF1B "peptide deformylase 1B" species:3702
"Arabidopsis thaliana" [GO:0005506 "iron ion binding" evidence=IEA]
[GO:0006412 "translation" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042586 "peptide deformylase activity"
evidence=IEA;ISS;IDA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR000181 PRINTS:PR01576 Pfam:PF01327 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0009570
GO:GO:0005506 GO:GO:0006412 eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 EMBL:AF269165 EMBL:AL163792
EMBL:AY050879 EMBL:AY096673 EMBL:AY085417 IPI:IPI00542984
PIR:T48639 RefSeq:NP_196970.1 RefSeq:NP_850821.1 UniGene:At.5087
PDB:3CPM PDB:3M6O PDB:3M6P PDB:3M6Q PDB:3M6R PDB:3O3J PDB:3PN2
PDB:3PN3 PDB:3PN4 PDB:3PN5 PDB:3PN6 PDBsum:3CPM PDBsum:3M6O
PDBsum:3M6P PDBsum:3M6Q PDBsum:3M6R PDBsum:3O3J PDBsum:3PN2
PDBsum:3PN3 PDBsum:3PN4 PDBsum:3PN5 PDBsum:3PN6
ProteinModelPortal:Q9FUZ2 SMR:Q9FUZ2 IntAct:Q9FUZ2 STRING:Q9FUZ2
PaxDb:Q9FUZ2 PRIDE:Q9FUZ2 EnsemblPlants:AT5G14660.1
EnsemblPlants:AT5G14660.2 GeneID:831318 KEGG:ath:AT5G14660
TAIR:At5g14660 HOGENOM:HOG000243509 InParanoid:Q9FUZ2 OMA:PEQSHEI
PhylomeDB:Q9FUZ2 ProtClustDB:CLSN2687238 SABIO-RK:Q9FUZ2
EvolutionaryTrace:Q9FUZ2 Genevestigator:Q9FUZ2 GermOnline:AT5G14660
Uniprot:Q9FUZ2
Length = 273
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 56/171 (32%), Positives = 89/171 (52%)
Query: 97 EIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDR 156
+I E ++N++D M VM G+GL+APQ+G+ ++++V E + KE
Sbjct: 99 DIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGE--PGEGKE------- 149
Query: 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDAT 216
++++NPK+KK SD+ F EGCLS G A V R +++ D G+ + +
Sbjct: 150 -----IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLS 204
Query: 217 GWQARILQHECDHLDGTLYVDKMVPKTF-RIVENLDLPLAEGCPKLGVHEP 266
ARI QHE DHL+G L+ D+M + I E L+ + K G+ P
Sbjct: 205 RLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEKTGLPSP 255
Score = 109 (43.4 bits), Expect = 0.00092, P = 0.00092
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ DP+L + +D I E ++N++D M VM G+GL+APQ+G+ ++++V
Sbjct: 82 KIVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF 138
Query: 137 EDTKE 141
E
Sbjct: 139 NPAGE 143
>UNIPROTKB|P96275 [details] [associations]
symbol:def "Peptide deformylase" species:1773
"Mycobacterium tuberculosis" [GO:0035601 "protein deacylation"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0042586
"peptide deformylase activity" evidence=IDA] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0005506 GO:GO:0006412 EMBL:BX842573
GO:GO:0035601 eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 PIR:C70631 RefSeq:NP_214943.1
RefSeq:NP_334853.1 RefSeq:YP_006513755.1 PDB:3E3U PDBsum:3E3U
ProteinModelPortal:P96275 SMR:P96275 PRIDE:P96275
EnsemblBacteria:EBMYCT00000003426 EnsemblBacteria:EBMYCT00000072922
GeneID:13318296 GeneID:886366 GeneID:923753 KEGG:mtc:MT0444
KEGG:mtu:Rv0429c KEGG:mtv:RVBD_0429c PATRIC:18122688
TubercuList:Rv0429c OMA:LIGRWKR BindingDB:P96275 ChEMBL:CHEMBL5765
EvolutionaryTrace:P96275 Uniprot:P96275
Length = 197
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 61/166 (36%), Positives = 79/166 (47%)
Query: 82 GDPVLHEPAREVDPGEIGS--ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
GDPVLH V GS + +I M M +A GVGLAA QIG LR+ V +
Sbjct: 10 GDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCA 69
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ + + P L P+ D EGCLSV G R
Sbjct: 70 ADRAMTARRRGVVI---NPV-LETSEIPETMPDPDTDD---EGCLSVPGESFPTGRAKWA 122
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
VTGLD DG P+ ++ TG AR+LQHE HLDG LY+D+++ + R
Sbjct: 123 RVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYAR 168
>TIGR_CMR|CPS_0020 [details] [associations]
symbol:CPS_0020 "polypeptide deformylase" species:167879
"Colwellia psychrerythraea 34H" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:EMDQYQE
RefSeq:YP_266802.1 ProteinModelPortal:Q48AS8 SMR:Q48AS8
STRING:Q48AS8 GeneID:3519823 KEGG:cps:CPS_0020 PATRIC:21463475
BioCyc:CPSY167879:GI48-137-MONOMER Uniprot:Q48AS8
Length = 171
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 57/147 (38%), Positives = 83/147 (56%)
Query: 106 IIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMIL 165
IIDDM+ M GVGLAA Q+ + RI+V+ DT E + +P ++ +
Sbjct: 31 IIDDMLATMYEENGVGLAATQVDIHQRIVVM-DTSED------------NDQP---IIFI 74
Query: 166 NPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQH 225
NP++ S+ T++ EGCLSV G A V+R+ V LDR G+ ++AT Q+ +QH
Sbjct: 75 NPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGKEFSLNATELQSICIQH 134
Query: 226 ECDHLDGTLYVDKMVP-KTFRIVENLD 251
E DHL G L+VD + P K RI + L+
Sbjct: 135 ELDHLKGVLFVDYLSPLKRQRIQKKLE 161
>TIGR_CMR|GSU_0129 [details] [associations]
symbol:GSU_0129 "polypeptide deformylase" species:243231
"Geobacter sulfurreducens PCA" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE017180 GenomeReviews:AE017180_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:NP_951191.2 GeneID:2687913
KEGG:gsu:GSU0129 PATRIC:22023006 ProtClustDB:CLSK827656
BioCyc:GSUL243231:GH27-140-MONOMER Uniprot:Q74GW5
Length = 167
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 54/145 (37%), Positives = 80/145 (55%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P I ++ + ++ DM + M A GVGLAAPQIGV R+IV++ +S +
Sbjct: 19 PVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVID-----VSQR-------- 65
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
D RP +L++ +NP + + + EGCLSV Y A V R+ + V L+ +G+ +
Sbjct: 66 DERP-ELIVCINPVIIH-GEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEEVVHR 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A QHE DHLDG L+VD +
Sbjct: 124 AEGLLAIAFQHEIDHLDGVLFVDHL 148
>TIGR_CMR|NSE_0392 [details] [associations]
symbol:NSE_0392 "peptide deformylase" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:YP_506280.1
ProteinModelPortal:Q2GE16 STRING:Q2GE16 GeneID:3931718
KEGG:nse:NSE_0392 PATRIC:22680845 OMA:KANGWLA
ProtClustDB:CLSK2527811 BioCyc:NSEN222891:GHFU-416-MONOMER
Uniprot:Q2GE16
Length = 186
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 59/169 (34%), Positives = 87/169 (51%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A L I++ DP+LHE + V G +R+ +DDM++ M G+GLAA Q+GV R
Sbjct: 2 ALLALIIEP-DPLLHEVSEAV-AGLSDEKRV--FLDDMLETMYHCGGIGLAAVQVGVLER 57
Query: 133 IIVLEDT--KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYR 190
IIV++ KE+ S P+ +NP++ + S EGCLS+
Sbjct: 58 IIVVDVPVGKEWHSSPLNHVGYKSSGGPY---YFVNPEIIEFSQNLVPADEGCLSLPEQH 114
Query: 191 AVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ R + V L+ DG+ + A GW AR +QHE DHL+G LYV +
Sbjct: 115 YEIIRPDAVVVKYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHL 163
>GENEDB_PFALCIPARUM|PFI0380c [details] [associations]
symbol:PFI0380c "formylmethionine deformylase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=IDA] HAMAP:MF_00163 InterPro:IPR000181
PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327 GO:GO:0005506
GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 OMA:PEQSHEI GO:GO:0008463 GO:GO:0020011
EMBL:AL844508 RefSeq:XP_001351951.1 PDB:1JYM PDB:1RL4 PDB:1RQC
PDBsum:1JYM PDBsum:1RL4 PDBsum:1RQC ProteinModelPortal:Q8I372
SMR:Q8I372 EnsemblProtists:PFI0380c:mRNA GeneID:813356
KEGG:pfa:PFI0380c EuPathDB:PlasmoDB:PF3D7_0907900 KO:K01450
ProtClustDB:CLSZ2433563 EvolutionaryTrace:Q8I372 Uniprot:Q8I372
Length = 241
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 55/164 (33%), Positives = 88/164 (53%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ DP+L + EV + + ++ ++ M +M + G+GL+APQ+ + RIIV
Sbjct: 66 KIVKYPDPILRRRSEEVTNFD---DNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVW 122
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + KEE + R F +NP + ++S EGCLS G VER
Sbjct: 123 NALYE----KRKEE----NERIF-----INPSIVEQSLVKLKLIEGCLSFPGIEGKVERP 169
Query: 197 LDIEVTGLDRDG-QPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ ++ D +G + +K+ G +RI QHE DHL+GTL++DKM
Sbjct: 170 SIVSISYYDINGYKHLKI-LKGIHSRIFQHEFDHLNGTLFIDKM 212
>UNIPROTKB|Q8I372 [details] [associations]
symbol:PFI0380c "Formylmethionine deformylase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=IDA] HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749
PRINTS:PR01576 Pfam:PF01327 GO:GO:0005506 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:PEQSHEI
GO:GO:0008463 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001351951.1
PDB:1JYM PDB:1RL4 PDB:1RQC PDBsum:1JYM PDBsum:1RL4 PDBsum:1RQC
ProteinModelPortal:Q8I372 SMR:Q8I372 EnsemblProtists:PFI0380c:mRNA
GeneID:813356 KEGG:pfa:PFI0380c EuPathDB:PlasmoDB:PF3D7_0907900
KO:K01450 ProtClustDB:CLSZ2433563 EvolutionaryTrace:Q8I372
Uniprot:Q8I372
Length = 241
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 55/164 (33%), Positives = 88/164 (53%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ DP+L + EV + + ++ ++ M +M + G+GL+APQ+ + RIIV
Sbjct: 66 KIVKYPDPILRRRSEEVTNFD---DNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVW 122
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + KEE + R F +NP + ++S EGCLS G VER
Sbjct: 123 NALYE----KRKEE----NERIF-----INPSIVEQSLVKLKLIEGCLSFPGIEGKVERP 169
Query: 197 LDIEVTGLDRDG-QPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ ++ D +G + +K+ G +RI QHE DHL+GTL++DKM
Sbjct: 170 SIVSISYYDINGYKHLKI-LKGIHSRIFQHEFDHLNGTLFIDKM 212
>TIGR_CMR|BA_4005 [details] [associations]
symbol:BA_4005 "polypeptide deformylase" species:198094
"Bacillus anthracis str. Ames" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 eggNOG:COG0242
HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 RefSeq:NP_846247.1 RefSeq:YP_020646.1
RefSeq:YP_029969.1 ProteinModelPortal:Q81WH1 SMR:Q81WH1
DNASU:1086728 EnsemblBacteria:EBBACT00000010618
EnsemblBacteria:EBBACT00000015698 EnsemblBacteria:EBBACT00000019234
GeneID:1086728 GeneID:2816204 GeneID:2852977 KEGG:ban:BA_4005
KEGG:bar:GBAA_4005 KEGG:bat:BAS3718 OMA:IQIGVPR
ProtClustDB:PRK12846 BioCyc:BANT260799:GJAJ-3776-MONOMER
BioCyc:BANT261594:GJ7F-3893-MONOMER Uniprot:Q81WH1
Length = 156
Score = 124 (48.7 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 164 ILNPK-LKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
++NP L+K+ ++ EGCLS G VER I+V +R G+ ++A G AR
Sbjct: 72 LINPSILEKRGEQVGP--EGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGLLARA 129
Query: 223 LQHECDHLDGTLYVDKM 239
+QHE DHL G L+ K+
Sbjct: 130 IQHEIDHLHGVLFTSKV 146
Score = 94 (38.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV+ + VL P V + +++ ++ DM + M A GVGLAAPQ+GV L++ V+
Sbjct: 5 EIVKHPNEVLETPCERVINFD---KKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVV 61
Query: 137 E 137
+
Sbjct: 62 D 62
>TIGR_CMR|CJE_0184 [details] [associations]
symbol:CJE_0184 "peptide deformylase" species:195099
"Campylobacter jejuni RM1221" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:PEQSHEI
ProtClustDB:PRK00150 RefSeq:YP_178208.1 ProteinModelPortal:Q5HWX7
SMR:Q5HWX7 STRING:Q5HWX7 GeneID:3230947 KEGG:cjr:CJE0184
PATRIC:20042077 BioCyc:CJEJ195099:GJC0-189-MONOMER Uniprot:Q5HWX7
Length = 175
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 49/137 (35%), Positives = 79/137 (57%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLL 162
+ ++DDM + M ++ GVGLAA Q+ +PLR++++ E Q KE DLL
Sbjct: 27 LHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLVNIFDEN-DEQKKE----------DLL 75
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
I+NP++ + EGCLSV + V+RY I + DR G+ +++A G+ A
Sbjct: 76 EIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAVA 135
Query: 223 LQHECDHLDGTLYVDKM 239
+QHE DHL+G L+++K+
Sbjct: 136 IQHENDHLNGHLFIEKI 152
>TIGR_CMR|APH_1012 [details] [associations]
symbol:APH_1012 "putative polypeptide deformylase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:ALANDMM
ProtClustDB:CLSK749347 RefSeq:YP_505573.1 STRING:Q2GJ78
GeneID:3930427 KEGG:aph:APH_1012 PATRIC:20950760
BioCyc:APHA212042:GHPM-1020-MONOMER Uniprot:Q2GJ78
Length = 197
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 46/157 (29%), Positives = 77/157 (49%)
Query: 85 VLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYIS 144
VLH + P E + I+++M+K+ VGL+A Q+G P+R+ V++ +
Sbjct: 14 VLHTVS---SPLESVDSATREIVNEMIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFN 70
Query: 145 Y-QSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV-VERYLDIEVT 202
+ + I L+ +NP++ S T FEGCLSV Y V ++R ++++
Sbjct: 71 ITEDLKVISGHHSHNTRSLVCINPQIVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLK 130
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
D G + W AR +QHE DHL+G L + +
Sbjct: 131 YTDLAGNVCVIRTFNWLARCVQHEMDHLNGVLLANML 167
>UNIPROTKB|P0A6K3 [details] [associations]
symbol:def species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0042586 "peptide
deformylase activity" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IDA] [GO:0031365 "N-terminal protein amino acid
modification" evidence=IDA] [GO:0008198 "ferrous iron binding"
evidence=IDA] [GO:0043686 "co-translational protein modification"
evidence=IPI] [GO:0006412 "translation" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00163 InterPro:IPR000181
PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327 GO:GO:0008198
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
GO:GO:0031365 eggNOG:COG0242 KO:K01462 GO:GO:0042586 GO:GO:0043686
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 OMA:IQIGVPR
ProtClustDB:PRK00150 EMBL:X77800 EMBL:X63666 EMBL:X65946
EMBL:X77091 PIR:S23107 RefSeq:NP_417745.1 RefSeq:YP_492146.1
PDB:1BS4 PDB:1BS5 PDB:1BS6 PDB:1BS7 PDB:1BS8 PDB:1BSJ PDB:1BSK
PDB:1BSZ PDB:1DEF PDB:1DFF PDB:1DTF PDB:1G27 PDB:1G2A PDB:1ICJ
PDB:1LRU PDB:1XEM PDB:1XEN PDB:1XEO PDB:2AI8 PDB:2DEF PDB:2DTF
PDB:2KMN PDB:2VHM PDB:2W3T PDB:2W3U PDB:3K6L PDB:4AL2 PDB:4AL3
PDBsum:1BS4 PDBsum:1BS5 PDBsum:1BS6 PDBsum:1BS7 PDBsum:1BS8
PDBsum:1BSJ PDBsum:1BSK PDBsum:1BSZ PDBsum:1DEF PDBsum:1DFF
PDBsum:1DTF PDBsum:1G27 PDBsum:1G2A PDBsum:1ICJ PDBsum:1LRU
PDBsum:1XEM PDBsum:1XEN PDBsum:1XEO PDBsum:2AI8 PDBsum:2DEF
PDBsum:2DTF PDBsum:2KMN PDBsum:2VHM PDBsum:2W3T PDBsum:2W3U
PDBsum:3K6L PDBsum:4AL2 PDBsum:4AL3 ProteinModelPortal:P0A6K3
SMR:P0A6K3 DIP:DIP-47953N IntAct:P0A6K3 PaxDb:P0A6K3 PRIDE:P0A6K3
EnsemblBacteria:EBESCT00000002247 EnsemblBacteria:EBESCT00000017291
GeneID:12934422 GeneID:947780 KEGG:ecj:Y75_p3890 KEGG:eco:b3287
PATRIC:32122006 EchoBASE:EB1410 EcoGene:EG11440
BioCyc:EcoCyc:EG11440-MONOMER BioCyc:ECOL316407:JW3248-MONOMER
BioCyc:MetaCyc:EG11440-MONOMER SABIO-RK:P0A6K3 BindingDB:P0A6K3
ChEMBL:CHEMBL4976 EvolutionaryTrace:P0A6K3 Genevestigator:P0A6K3
Uniprot:P0A6K3
Length = 169
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 42/94 (44%), Positives = 61/94 (64%)
Query: 162 LMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQAR 221
L+++NP+L +KS T + EGCLS+ RA+V R +++ LDRDG+P +++A G A
Sbjct: 71 LVLINPELLEKSGETGIE-EGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAI 129
Query: 222 ILQHECDHLDGTLYVDKMVP-KTFRI---VENLD 251
+QHE DHL G L++D + P K RI VE LD
Sbjct: 130 CIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLD 163
Score = 106 (42.4 bits), Expect = 0.00039, P = 0.00039
Identities = 33/102 (32%), Positives = 60/102 (58%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+++ D L + A+ V+ E+ +E IQ I+DDM + M + G+GLAA Q+ + RIIV+
Sbjct: 5 QVLHIPDERLRKVAKPVE--EVNAE-IQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL 178
+ +S ++++E R L+++NP+L +KS T +
Sbjct: 62 D-----VS-ENRDE------R----LVLINPELLEKSGETGI 87
>TIGR_CMR|APH_1372 [details] [associations]
symbol:APH_1372 "peptide deformylase" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000235 GenomeReviews:CP000235_GR
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_505871.1 STRING:Q2GID0
GeneID:3930818 KEGG:aph:APH_1372 PATRIC:20951546 OMA:LEIIHYP
ProtClustDB:CLSK747409 BioCyc:APHA212042:GHPM-1372-MONOMER
Uniprot:Q2GID0
Length = 187
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 52/159 (32%), Positives = 83/159 (52%)
Query: 88 EPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE-DTKEYISYQ 146
E RE D E+ ++++DM M + G+GLAA Q+GV RI V++ K S +
Sbjct: 19 EEVRETD----FCEKFNSLVEDMFDTMYAEQGIGLAAVQVGVHKRIFVIDLGPKTEESSE 74
Query: 147 SKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDR 206
++ + ++++NP++ +KS EGCLSV R +V R I + D
Sbjct: 75 IADDPDGY-HSTCGPMVVINPEIVEKSVDLVSMEEGCLSVPDQRELVVRPERIVMQYTDL 133
Query: 207 DGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
G+ + A G +R LQHE DHL+GT+++ K + K R
Sbjct: 134 HGKRKILKAQGLLSRCLQHEIDHLNGTVFL-KHISKLKR 171
>TIGR_CMR|BA_4187 [details] [associations]
symbol:BA_4187 "polypeptide deformylase" species:198094
"Bacillus anthracis str. Ames" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 eggNOG:COG0242 KO:K01462
OMA:LTSGEGC GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
ProtClustDB:PRK00150 RefSeq:NP_846423.1 RefSeq:YP_020831.1
RefSeq:YP_030134.1 ProteinModelPortal:Q81MQ9 SMR:Q81MQ9
DNASU:1088919 EnsemblBacteria:EBBACT00000010470
EnsemblBacteria:EBBACT00000016119 EnsemblBacteria:EBBACT00000020183
GeneID:1088919 GeneID:2818161 GeneID:2850259 KEGG:ban:BA_4187
KEGG:bar:GBAA_4187 KEGG:bat:BAS3884 HOGENOM:HOG000243507
BioCyc:BANT260799:GJAJ-3941-MONOMER
BioCyc:BANT261594:GJ7F-4072-MONOMER Uniprot:Q81MQ9
Length = 184
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 55/177 (31%), Positives = 85/177 (48%)
Query: 75 LPEIVQAGDPVLHE-------PAREVDPGEIGSERIQNIID----DMVKVMRSAPGVGLA 123
+ ++++ GDP+L PA E D + E I+ +I+ +M + PG+GLA
Sbjct: 4 MKDVIREGDPILRNVAEEVVIPASEEDTNTL-KEMIEFVINSQDPEMAEKYSLRPGIGLA 62
Query: 124 APQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKS-DRTALFF-E 181
APQIG+ ++I + T + S + NPK+ S +RT L E
Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHA--------------LFNPKIISHSVERTYLQSGE 108
Query: 182 GCLSVNG-YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
GCLSV+ V RY I V +G+ +K+ G A + QHE DHL+G ++ D
Sbjct: 109 GCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYD 165
>TIGR_CMR|SO_1062 [details] [associations]
symbol:SO_1062 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 RefSeq:NP_716689.1
ProteinModelPortal:Q8EHZ2 GeneID:1168899 KEGG:son:SO_1062
PATRIC:23521771 OMA:ATETEYR ProtClustDB:CLSK906069 Uniprot:Q8EHZ2
Length = 181
Score = 165 (63.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 55/175 (31%), Positives = 83/175 (47%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
Q LP I G+ +L + A EV + + + + M M A GVG+AAPQ+
Sbjct: 8 QTPNKPLP-IAVVGEAILKQQAIEVRDFD---DTLSQLASQMAASMVEAKGVGIAAPQVH 63
Query: 129 VPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNG 188
PL + ++ S+ + D + L+++NP++ +S + EGCLSV G
Sbjct: 64 SPLALFIMA---------SRPNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPG 114
Query: 189 YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG-TLYVDKMVPK 242
R + R I V + GQ + TG+ ARI QHE DHL G TL +P+
Sbjct: 115 QRFTIWRPQTIVVRYQNLAGQWQHSELTGFIARIFQHEFDHLQGITLLERSQMPE 169
>TIGR_CMR|SPO_3217 [details] [associations]
symbol:SPO_3217 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168420.1 ProteinModelPortal:Q5LNI7
GeneID:3194969 KEGG:sil:SPO3217 PATRIC:23379881 OMA:TVIQHEI
ProtClustDB:CLSK934097 Uniprot:Q5LNI7
Length = 165
Score = 162 (62.1 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 51/156 (32%), Positives = 76/156 (48%)
Query: 84 PVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYI 143
P H R + EI E I+ I DM+ M + PGVGLAAPQIGV LR+ V++
Sbjct: 10 PDKHLRTRAAEVSEITDE-IRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAVVDG----- 63
Query: 144 SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTG 203
S E +A + + NP++ S E ++ G A ++R + V
Sbjct: 64 ---SSERGRA--------VRLANPEILHASIELREHDEASPNLPGVSAKLKRPRAVTVRF 112
Query: 204 LDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
L+ GQ + D G +A +QH+ DHL+G +Y D +
Sbjct: 113 LNEQGQVDRRDFVGIEATSVQHQIDHLNGRMYFDNL 148
>TIGR_CMR|DET_0760 [details] [associations]
symbol:DET_0760 "peptide deformylase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0242 HOGENOM:HOG000243508 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 TIGRFAMs:TIGR00079 ProtClustDB:PRK00150 HSSP:P0A6K3
RefSeq:YP_181493.1 ProteinModelPortal:Q3Z8F6 STRING:Q3Z8F6
GeneID:3229925 KEGG:det:DET0760 PATRIC:21608581 OMA:AMATIRQ
BioCyc:DETH243164:GJNF-761-MONOMER Uniprot:Q3Z8F6
Length = 167
Score = 161 (61.7 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
+++NP++ KK + + EGCLS+ GY + R + GLDR G+ ++ TG A++
Sbjct: 71 VLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVTAKGLDRHGKAFRIKGTGVVAQL 129
Query: 223 LQHECDHLDGTLYVDKM 239
L+HE +HLDG LY+D +
Sbjct: 130 LEHETEHLDGILYIDHL 146
Score = 144 (55.7 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + +P+L + A++V P GS IQ +IDDM++ M+SA G GLAAPQ+GV LR+IV
Sbjct: 6 ICELPEPILRKKAKKV-PSIDGS--IQTLIDDMIETMKSADGAGLAAPQVGVSLRLIVFR 62
Query: 138 --DTKEYISYQSKEEIKAFDRR 157
D KE + E +K +R
Sbjct: 63 EPDAKEATVLINPEIVKKEGQR 84
>TIGR_CMR|CBU_1879 [details] [associations]
symbol:CBU_1879 "polypeptide deformylase, putative"
species:227377 "Coxiella burnetii RSA 493" [GO:0006464 "cellular
protein modification process" evidence=ISS] [GO:0008463
"formylmethionine deformylase activity" evidence=ISS]
HAMAP:MF_00163 InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576
Pfam:PF01327 GO:GO:0005506 GO:GO:0006412 EMBL:AE016828
GenomeReviews:AE016828_GR eggNOG:COG0242 KO:K01462 GO:GO:0042586
Gene3D:3.90.45.10 InterPro:IPR023635 PANTHER:PTHR10458
SUPFAM:SSF56420 RefSeq:NP_820856.1 ProteinModelPortal:Q83AK6
GeneID:1209792 KEGG:cbu:CBU_1879 PATRIC:17932489
HOGENOM:HOG000026809 OMA:REYHREY ProtClustDB:CLSK915093
BioCyc:CBUR227377:GJ7S-1855-MONOMER Uniprot:Q83AK6
Length = 209
Score = 153 (58.9 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 56/162 (34%), Positives = 82/162 (50%)
Query: 85 VLHEPAREVDPGEIG-SERIQNIIDDMVKVMRSAPG-VGLAAPQIGVPLRIIVLEDTKEY 142
VL++ A EV EI ++ + I+ M +S G G A PQ+G+ RII++E +
Sbjct: 13 VLYKVASEV---EIPLTKTTKEKIEAMRIFYKSFQGKAGFAVPQVGLSERIILVE--QHL 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
EE P +++NP + SD+ EGCLSV G VVERY+ +E+T
Sbjct: 68 FDTTMAEETD----EP---TILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELT 120
Query: 203 GL----DRDG-QPIKVDATGWQARIL-QHECDHLDGTLYVDK 238
D + IK + + +L QHE DHL+G +YVDK
Sbjct: 121 AWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVDK 162
>DICTYBASE|DDB_G0288157 [details] [associations]
symbol:DDB_G0288157 "Peptide deformylase,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0042586
"peptide deformylase activity" evidence=IEA] [GO:0005506 "iron ion
binding" evidence=IEA] HAMAP:MF_00163 InterPro:IPR000181
PRINTS:PR01576 dictyBase:DDB_G0288157 Pfam:PF01327 GO:GO:0005506
EMBL:AAFI02000109 eggNOG:COG0242 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
RefSeq:XP_636872.1 ProteinModelPortal:Q54JC1 STRING:Q54JC1
EnsemblProtists:DDB0187806 GeneID:8626484 KEGG:ddi:DDB_G0288157
InParanoid:Q54JC1 OMA:DITGKER Uniprot:Q54JC1
Length = 243
Score = 105 (42.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGS-ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
IV+ G+ +L E A E+ R++ +++ M K M+ G G+AAPQIGV ++ +L
Sbjct: 10 IVKVGNKLLREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQLFLL 69
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLK 170
E S+E + + F L NPK+K
Sbjct: 70 E-------LPSQEGLNCPN---FPLTAFFNPKIK 93
Score = 100 (40.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 174 DRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGT 233
+ T E CLSV A V+R +T LD G+ ++A G A QHE DHL G
Sbjct: 144 NNTITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEADGILAACFQHEYDHLLGK 203
Query: 234 LYVDKM 239
+++D++
Sbjct: 204 IFIDRI 209
>TIGR_CMR|CBU_0993 [details] [associations]
symbol:CBU_0993 "peptide deformylase" species:227377
"Coxiella burnetii RSA 493" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 RefSeq:NP_820000.1
ProteinModelPortal:Q83CV9 PRIDE:Q83CV9 GeneID:1208889
KEGG:cbu:CBU_0993 PATRIC:17930707 OMA:WATCAQH ProtClustDB:PRK00150
BioCyc:CBUR227377:GJ7S-984-MONOMER Uniprot:Q83CV9
Length = 170
Score = 147 (56.8 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 50/168 (29%), Positives = 91/168 (54%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG-VGLAAPQIGV--PLRI 133
+I+Q DP L A+ V+ + + +Q +ID+M + +A LAA Q+ + P I
Sbjct: 3 KILQYPDPRLKTAAQRVEKFD---DALQKMIDEMFETHYAATNCAALAATQLDMENPKHI 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKS-DRTALFFEGCLSVNGYR-A 191
V++ + +K++ P L ++N ++ ++S + T EGC+SV G
Sbjct: 60 TVIDFSP------NKDQ-------P---LCLVNAEIIERSGEHTEE--EGCMSVGGGTFE 101
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V R I+V DR G+P++ +A G+ A+ +QHE DHL+G +++D++
Sbjct: 102 KVTRAAKIKVRARDRYGKPVEFEADGFMAKCIQHELDHLNGIIFLDRL 149
>TIGR_CMR|ECH_0939 [details] [associations]
symbol:ECH_0939 "putative polypeptide deformylase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006464
"cellular protein modification process" evidence=ISS] [GO:0042586
"peptide deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
HOGENOM:HOG000243509 RefSeq:YP_507728.1 ProteinModelPortal:Q2GFQ5
STRING:Q2GFQ5 GeneID:3927713 KEGG:ech:ECH_0939 PATRIC:20577264
OMA:ALANDMM ProtClustDB:CLSK749347
BioCyc:ECHA205920:GJNR-942-MONOMER Uniprot:Q2GFQ5
Length = 194
Score = 145 (56.1 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 44/144 (30%), Positives = 68/144 (47%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P E + I + +DM+KVM + VGL+A Q+G R+ ++ ++ +
Sbjct: 21 PIEKIDQEIIALANDMMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQDIKVLSG 80
Query: 155 DRRPFDLLMI-LNPKLKKKSDRTALFFEGCLSVNGYRAV-VER--YLDIEVTGLDRDGQP 210
MI +NP++ S T FEGC S Y + + R ++D+ T D G
Sbjct: 81 HHSLHGKNMICINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYT--DLLGNE 138
Query: 211 IKVDATGWQARILQHECDHLDGTL 234
V GW +R +QHE DHL+G L
Sbjct: 139 CIVRVYGWLSRCIQHELDHLNGIL 162
>TIGR_CMR|SPO_3218 [details] [associations]
symbol:SPO_3218 "peptide deformylase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0042586 "peptide
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10 InterPro:IPR023635
PANTHER:PTHR10458 SUPFAM:SSF56420 TIGRFAMs:TIGR00079
HOGENOM:HOG000243509 RefSeq:YP_168421.1 ProteinModelPortal:Q5LNI6
GeneID:3195601 KEGG:sil:SPO3218 PATRIC:23379883 OMA:KLIRPAK
ProtClustDB:CLSK751629 Uniprot:Q5LNI6
Length = 165
Score = 142 (55.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 44/139 (31%), Positives = 70/139 (50%)
Query: 105 NIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMI 164
++I DM M +A G GLAAPQ+GV R V++ + ++ + P + MI
Sbjct: 28 DLIRDMFDTMYAAKGRGLAAPQVGVMQRFFVMD-----VGWK--------EGPPSPMAMI 74
Query: 165 LNPKLKKKSDRTALFFEG-CLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARIL 223
NP + ++R + E CLS+ G V R + V +G D G++AR +
Sbjct: 75 -NPVIMA-AERVPVEMEEVCLSIPGLSVPVTRPKAVTVQWTAPEGDIHMADFDGFEARCI 132
Query: 224 QHECDHLDGTLYVDKMVPK 242
QHE DHL+G + +D + P+
Sbjct: 133 QHEFDHLNGVVTLDHLDPR 151
>TIGR_CMR|SO_0032 [details] [associations]
symbol:SO_0032 "polypeptide deformylase" species:211586
"Shewanella oneidensis MR-1" [GO:0006464 "cellular protein
modification process" evidence=ISS] [GO:0008463 "formylmethionine
deformylase activity" evidence=ISS] HAMAP:MF_00163
InterPro:IPR000181 PIRSF:PIRSF004749 PRINTS:PR01576 Pfam:PF01327
GO:GO:0005506 GO:GO:0006412 EMBL:AE014299 GenomeReviews:AE014299_GR
eggNOG:COG0242 KO:K01462 GO:GO:0042586 Gene3D:3.90.45.10
InterPro:IPR023635 PANTHER:PTHR10458 SUPFAM:SSF56420
TIGRFAMs:TIGR00079 HOGENOM:HOG000243509 ProtClustDB:PRK00150
RefSeq:NP_715674.1 ProteinModelPortal:Q8EKQ8 SMR:Q8EKQ8
GeneID:1167930 KEGG:son:SO_0032 PATRIC:23519755 OMA:EMDQYQE
Uniprot:Q8EKQ8
Length = 168
Score = 136 (52.9 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 43/125 (34%), Positives = 63/125 (50%)
Query: 128 GVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVN 187
G+ L ++ K+ I ++E++ RP + +NP++ S EGCLSV
Sbjct: 44 GIGLAATQVDYHKQLIVMDLQDEVE----RP---KVFINPEIIASSGDFCNE-EGCLSVP 95
Query: 188 GYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP-KTFRI 246
G A V+R + V LDR G V+A A +QHE DHL G L+VD + P K RI
Sbjct: 96 GIYAKVDRAEFVTVKALDRHGNEFTVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRI 155
Query: 247 VENLD 251
+ L+
Sbjct: 156 KQKLE 160
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 266 266 0.00094 114 3 11 22 0.47 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 600 (64 KB)
Total size of DFA: 191 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.35u 0.13s 24.48t Elapsed: 00:00:01
Total cpu time: 24.35u 0.13s 24.48t Elapsed: 00:00:01
Start: Mon May 20 15:42:52 2013 End: Mon May 20 15:42:53 2013