BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024519
(266 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis]
gi|223543236|gb|EEF44768.1| polypeptide deformylase, putative [Ricinus communis]
Length = 266
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/267 (74%), Positives = 224/267 (83%), Gaps = 4/267 (1%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSA---PIILCPTRKLVSSPDFSNDVTFSPHRKARTTSA 57
ME +HRFS+ LPI LA + +K PI TR +S PDF + +S RK+ ++S+
Sbjct: 1 METLHRFSLRLLPISLADKCLKPTKHHPIYRL-TRIPISKPDFRTTIPYSITRKSLSSSS 59
Query: 58 ISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSA 117
I+KAGWLLGLG+NKK LP+IV+AGDPVLHEPAREVDP EIGSERIQ IIDDMVKVMR A
Sbjct: 60 IAKAGWLLGLGENKKMSLPDIVKAGDPVLHEPAREVDPDEIGSERIQKIIDDMVKVMRRA 119
Query: 118 PGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA 177
PGVGLAAPQIGVPLRIIVLEDT EYI Y KEE KA DRRPFDLL+ILNPKLKKK +RTA
Sbjct: 120 PGVGLAAPQIGVPLRIIVLEDTTEYIGYAPKEETKAQDRRPFDLLVILNPKLKKKGNRTA 179
Query: 178 LFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
LFFEGCLSV+G+RAVVER L++EV+GLDR GQPIKVDA+GWQARILQHECDHLDGTLYVD
Sbjct: 180 LFFEGCLSVDGFRAVVERSLEVEVSGLDRSGQPIKVDASGWQARILQHECDHLDGTLYVD 239
Query: 238 KMVPKTFRIVENLDLPLAEGCPKLGVH 264
KMVP+TFR V+NLDLPLAEGCP LG
Sbjct: 240 KMVPRTFRTVDNLDLPLAEGCPNLGAQ 266
>gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa]
gi|222845365|gb|EEE82912.1| peptide deformylase [Populus trichocarpa]
Length = 299
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/264 (72%), Positives = 219/264 (82%), Gaps = 2/264 (0%)
Query: 1 MEAIHRFSVCHLPICLAKRHIK--SAPIILCPTRKLVSSPDFSNDVTFSPHRKARTTSAI 58
ME++HR S+ LPI LA++ K + P I TR LV P+F N RK+ ++S
Sbjct: 34 MESLHRCSLRLLPISLAEKCFKPTTLPTIFRFTRMLVPKPEFMNPNPHFTTRKSLSSSHT 93
Query: 59 SKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP 118
+KAGWLLG+G+ KK LP+IV+AGDPVLHEPAREVDP EIGSERIQ IIDDMVKVMR AP
Sbjct: 94 AKAGWLLGMGEKKKTSLPDIVKAGDPVLHEPAREVDPKEIGSERIQKIIDDMVKVMRMAP 153
Query: 119 GVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL 178
GVGLAAPQIG+PLRIIVLEDT EYI Y K E KA DRRPFDLL+I+NPKLKKKS+RTA
Sbjct: 154 GVGLAAPQIGIPLRIIVLEDTAEYIGYAPKNETKAQDRRPFDLLVIVNPKLKKKSNRTAF 213
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
FFEGCLSV+G+RA+VER+LD+EV GL RDGQPIKVDA+GWQARILQHECDHL+GTLYVDK
Sbjct: 214 FFEGCLSVDGFRAIVERHLDVEVIGLSRDGQPIKVDASGWQARILQHECDHLEGTLYVDK 273
Query: 239 MVPKTFRIVENLDLPLAEGCPKLG 262
MVP+TFR VENLDLPLAEGCP+ G
Sbjct: 274 MVPRTFRTVENLDLPLAEGCPEPG 297
>gi|449484173|ref|XP_004156806.1| PREDICTED: peptide deformylase 1A, chloroplastic-like isoform 1
[Cucumis sativus]
Length = 267
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/270 (71%), Positives = 218/270 (80%), Gaps = 9/270 (3%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPT-RKLV-----SSPDFSNDVTFSPHRKART 54
MEAIHRFS PI LA+R K P +L P RKL+ SSP+ + P + +
Sbjct: 1 MEAIHRFSFRLFPISLAERCRK--PSLLPPNFRKLIHRPISSSPNIPKFIPV-PKTYSSS 57
Query: 55 TSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVM 114
+++I+KAGW LGLG+ KK LP IV+AGDPVLHEPAREVDP EIGSE++Q IIDDM+ M
Sbjct: 58 STSIAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVQKIIDDMILTM 117
Query: 115 RSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSD 174
R APGVGLAAPQIG+PLRIIVLEDTKEYISY KEEIKA DRR FDLL+I+NPKLK KS+
Sbjct: 118 RKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRSFDLLVIINPKLKSKSN 177
Query: 175 RTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234
+TALFFEGCLSV+G+RAVVERYLD+EV G DRDG PIKVDA+GWQARILQHECDHLDGTL
Sbjct: 178 KTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQARILQHECDHLDGTL 237
Query: 235 YVDKMVPKTFRIVENLDLPLAEGCPKLGVH 264
YVDKMVP+TFR ENL LPLAEGCPKLG
Sbjct: 238 YVDKMVPRTFRTTENLTLPLAEGCPKLGAR 267
>gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas]
Length = 274
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/274 (68%), Positives = 215/274 (78%), Gaps = 10/274 (3%)
Query: 1 MEAIHRFSVCHLPICLAKR------HIKSAPIILCP----TRKLVSSPDFSNDVTFSPHR 50
ME + RFS+ LPI LA++ H + L P R +S P+F + S
Sbjct: 1 METLQRFSLRLLPISLAEKCLNPYTHGVPRAVTLAPLSRFARMSISKPEFLSSNPKSTFH 60
Query: 51 KARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDM 110
+ ++S +KAGW LGLG+ KK P+IV+AGDPVLHEPAREVDP EIGSERIQ IIDDM
Sbjct: 61 NSFSSSLTAKAGWFLGLGEKKKTSFPDIVKAGDPVLHEPAREVDPEEIGSERIQKIIDDM 120
Query: 111 VKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLK 170
+K MR APGVGLAAPQIGVPLRIIVLEDTKEYI Y KEE KA DRRPFDLL+ILNPKL+
Sbjct: 121 IKAMRMAPGVGLAAPQIGVPLRIIVLEDTKEYIRYAPKEETKAQDRRPFDLLVILNPKLE 180
Query: 171 KKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHL 230
KKS+RTA FFEGCLSV+G+RAVVERYLD+EVTGL R GQPIKV+A+GWQARILQHECDHL
Sbjct: 181 KKSNRTAFFFEGCLSVDGFRAVVERYLDVEVTGLSRYGQPIKVNASGWQARILQHECDHL 240
Query: 231 DGTLYVDKMVPKTFRIVENLDLPLAEGCPKLGVH 264
DGTLYVDKMVP+TFR +ENLDLPLAEGCP LG
Sbjct: 241 DGTLYVDKMVPRTFRTIENLDLPLAEGCPNLGAR 274
>gi|449468998|ref|XP_004152208.1| PREDICTED: LOW QUALITY PROTEIN: peptide deformylase 1A,
chloroplastic-like [Cucumis sativus]
Length = 267
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/270 (70%), Positives = 217/270 (80%), Gaps = 9/270 (3%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPT-RKLV-----SSPDFSNDVTFSPHRKART 54
MEAIHRFS PI LA+R K P +L P RKL+ SSP+ + P + +
Sbjct: 1 MEAIHRFSFRLFPISLAERCRK--PSLLPPNFRKLIHRPISSSPNIPKFIPV-PKTYSSS 57
Query: 55 TSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVM 114
+++I+KAGW LGLG+ KK LP IV+AGDPVLHEPAREVDP EIGSE++ IIDDM+ M
Sbjct: 58 STSIAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVXKIIDDMILTM 117
Query: 115 RSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSD 174
R APGVGLAAPQIG+PLRIIVLEDTKEYISY KEEIKA DRR FDLL+I+NPKLK KS+
Sbjct: 118 RKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRSFDLLVIINPKLKSKSN 177
Query: 175 RTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234
+TALFFEGCLSV+G+RAVVERYLD+EV G DRDG PIKVDA+GWQARILQHECDHLDGTL
Sbjct: 178 KTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQARILQHECDHLDGTL 237
Query: 235 YVDKMVPKTFRIVENLDLPLAEGCPKLGVH 264
YVDKMVP+TFR ENL LPLAEGCPKLG
Sbjct: 238 YVDKMVPRTFRTTENLTLPLAEGCPKLGAR 267
>gi|225442881|ref|XP_002281834.1| PREDICTED: peptide deformylase 1A, chloroplastic [Vitis vinifera]
gi|297743418|emb|CBI36285.3| unnamed protein product [Vitis vinifera]
Length = 277
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 183/280 (65%), Positives = 218/280 (77%), Gaps = 19/280 (6%)
Query: 1 MEAIHRFSVCHLPICLAKRHIK---SAPIILCPTRKL------VSSPD-------FSNDV 44
ME+I RFS LP CLA+ + ++P L P+ + S P FS
Sbjct: 1 MESISRFSQRLLPTCLAENCLINPITSPFRLIPSLQFHPTLIPTSKPGPSDPNRIFSTRK 60
Query: 45 TFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQ 104
T+ P + T I+ AGW+LGLG +KK LPEIV+AGDPVLHE A+EV+PGEIGS+RIQ
Sbjct: 61 TYRPSSSSSTL--IASAGWILGLG-DKKPALPEIVKAGDPVLHESAQEVEPGEIGSDRIQ 117
Query: 105 NIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMI 164
IIDDM+K MR+APGVGLAAPQIG+PLRIIVLEDTKEYISY K+ IKA +RRPFDLL+I
Sbjct: 118 KIIDDMIKAMRTAPGVGLAAPQIGIPLRIIVLEDTKEYISYDRKDVIKAQERRPFDLLVI 177
Query: 165 LNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQ 224
LNPKL+KK +RTA FFEGCLSV+G+RAVVER+L +EVTGL R+G+PIKVDA+GW+ARILQ
Sbjct: 178 LNPKLRKKGNRTAFFFEGCLSVDGFRAVVERHLQVEVTGLSRNGKPIKVDASGWKARILQ 237
Query: 225 HECDHLDGTLYVDKMVPKTFRIVENLDLPLAEGCPKLGVH 264
HECDHLDGTLYVDKMVP+TFR V+N+DLPLA GCPKLG
Sbjct: 238 HECDHLDGTLYVDKMVPRTFRTVQNIDLPLAVGCPKLGAR 277
>gi|356526200|ref|XP_003531707.1| PREDICTED: peptide deformylase 1A, chloroplastic-like [Glycine max]
Length = 252
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/263 (65%), Positives = 207/263 (78%), Gaps = 14/263 (5%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHRKARTTSAISK 60
MEA+H V +P+ + I L + +S+ + P R + T + ++
Sbjct: 1 MEALHLHRVLLMPVS------QKTSIFLRASGTPLST------LARPPLRWSSQTCS-AR 47
Query: 61 AGWLLGLGQN-KKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
AGW LGLG + KK LP+ V+AGDPVLHEPA++VDP EI SER+Q IIDDM++VMR APG
Sbjct: 48 AGWFLGLGADSKKTNLPDTVKAGDPVLHEPAQDVDPNEIKSERVQKIIDDMIQVMRKAPG 107
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF 179
VGLAAPQIG+PLRIIVLEDTKEYISY SKEE K DRRPFDLL+ILNPKL+KK RTALF
Sbjct: 108 VGLAAPQIGIPLRIIVLEDTKEYISYVSKEEAKTQDRRPFDLLVILNPKLEKKGKRTALF 167
Query: 180 FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
FEGCLSV+G+RAVVER+LD+EVTGLDR G PIK+ A+GWQARILQHECDHLDGTLYVDKM
Sbjct: 168 FEGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKIIASGWQARILQHECDHLDGTLYVDKM 227
Query: 240 VPKTFRIVENLDLPLAEGCPKLG 262
+P+TFR V+N+DLPLA+GCPKLG
Sbjct: 228 LPRTFRTVDNMDLPLAQGCPKLG 250
>gi|350535372|ref|NP_001234703.1| peptide deformylase 1A, chloroplastic [Solanum lycopersicum]
gi|17433049|sp|Q9FUZ0.1|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A, chloroplastic; Short=PDF 1A;
AltName: Full=Polypeptide deformylase; Flags: Precursor
gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like protein [Solanum lycopersicum]
Length = 277
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 159/213 (74%), Positives = 189/213 (88%)
Query: 51 KARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDM 110
K +SA ++AGW LGLG+ KK +P+IV+AGDPVLHEP++++ EIGSERIQ II++M
Sbjct: 64 KKNYSSATARAGWFLGLGEKKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEM 123
Query: 111 VKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLK 170
VKVMR+APGVGLAAPQIG+PL+IIVLEDT EYISY K+E KA DRRPF LL+I+NPKLK
Sbjct: 124 VKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLK 183
Query: 171 KKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHL 230
KK ++TALFFEGCLSV+G+RAVVER+L++EVTGLDR+G+ IKVDA+GWQARILQHE DHL
Sbjct: 184 KKGNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHL 243
Query: 231 DGTLYVDKMVPKTFRIVENLDLPLAEGCPKLGV 263
DGTLYVDKM P+TFR VENLDLPLA GCPKLGV
Sbjct: 244 DGTLYVDKMAPRTFRTVENLDLPLAAGCPKLGV 276
>gi|18394237|ref|NP_563974.1| peptide deformylase 1A [Arabidopsis thaliana]
gi|334302914|sp|Q9FV53.3|DEF1A_ARATH RecName: Full=Peptide deformylase 1A, chloroplastic; Short=AtDEF1;
Short=AtPDF1A; Short=PDF 1A; AltName: Full=Polypeptide
deformylase; Flags: Precursor
gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like protein [Arabidopsis thaliana]
gi|332191194|gb|AEE29315.1| peptide deformylase 1A [Arabidopsis thaliana]
Length = 269
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 207/265 (78%), Gaps = 11/265 (4%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHR--KARTTSAI 58
ME + R S+ LP+ SA + R VS P S+ + + + ++S
Sbjct: 11 METLFRVSLRLLPV--------SAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLS 62
Query: 59 SKAGWLLGLGQNKK-AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSA 117
+KAGWLLGLG+ KK LPEIV +GDPVLHE AREVDPGEIGSERIQ IIDDM+KVMR A
Sbjct: 63 TKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLA 122
Query: 118 PGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA 177
PGVGLAAPQIGVPLRIIVLEDTKEYISY KEEI A +RR FDL++++NP LK++S++ A
Sbjct: 123 PGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKA 182
Query: 178 LFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
LFFEGCLSV+G+RA VERYL++ VTG DR G+ I+V+A+GWQARILQHECDHLDG LYVD
Sbjct: 183 LFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVD 242
Query: 238 KMVPKTFRIVENLDLPLAEGCPKLG 262
KMVP+TFR V+NLDLPLAEGCPKLG
Sbjct: 243 KMVPRTFRTVDNLDLPLAEGCPKLG 267
>gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
lyrata]
gi|297335944|gb|EFH66361.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp.
lyrata]
Length = 270
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/266 (65%), Positives = 205/266 (77%), Gaps = 12/266 (4%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFS---NDVTFSPHRKARTTSA 57
M + R S+ LP+ SA + R VS P S N ++ + ++S
Sbjct: 11 MGTLFRVSLGLLPV--------SAAVTCRSIRFPVSRPSSSHLLNRKLYNLPSSSSSSSL 62
Query: 58 ISKAGWLLGLGQNKK-AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRS 116
+KAGWLLGLG+ KK LPEIV AGDPVLHE AREVDP EIGSERIQ IIDDM+KVMR
Sbjct: 63 STKAGWLLGLGEKKKKVDLPEIVAAGDPVLHEKAREVDPEEIGSERIQKIIDDMIKVMRL 122
Query: 117 APGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRT 176
APGVGLAAPQIGVPLRIIVLEDTKEYISY KEEI A +RR FDL++++NP LK++S++
Sbjct: 123 APGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKK 182
Query: 177 ALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYV 236
ALFFEGCLSVNG+RA VERYL++ VTG DR G+ I+V+A+GWQARILQHECDHLDG LYV
Sbjct: 183 ALFFEGCLSVNGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYV 242
Query: 237 DKMVPKTFRIVENLDLPLAEGCPKLG 262
DKMVP+TFR V+NLDLPLAEGCPKLG
Sbjct: 243 DKMVPRTFRTVDNLDLPLAEGCPKLG 268
>gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia
pneumoniae genome gb|AE001687 [Arabidopsis thaliana]
gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis thaliana]
gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana]
Length = 259
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 207/265 (78%), Gaps = 11/265 (4%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHR--KARTTSAI 58
ME + R S+ LP+ SA + R VS P S+ + + + ++S
Sbjct: 1 METLFRVSLRLLPV--------SAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLS 52
Query: 59 SKAGWLLGLGQNKK-AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSA 117
+KAGWLLGLG+ KK LPEIV +GDPVLHE AREVDPGEIGSERIQ IIDDM+KVMR A
Sbjct: 53 TKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLA 112
Query: 118 PGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA 177
PGVGLAAPQIGVPLRIIVLEDTKEYISY KEEI A +RR FDL++++NP LK++S++ A
Sbjct: 113 PGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKA 172
Query: 178 LFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
LFFEGCLSV+G+RA VERYL++ VTG DR G+ I+V+A+GWQARILQHECDHLDG LYVD
Sbjct: 173 LFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVD 232
Query: 238 KMVPKTFRIVENLDLPLAEGCPKLG 262
KMVP+TFR V+NLDLPLAEGCPKLG
Sbjct: 233 KMVPRTFRTVDNLDLPLAEGCPKLG 257
>gi|449484177|ref|XP_004156807.1| PREDICTED: peptide deformylase 1A, chloroplastic-like isoform 2
[Cucumis sativus]
Length = 237
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/268 (61%), Positives = 192/268 (71%), Gaps = 39/268 (14%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPT-RKLV-----SSPDFSNDVTFSPHRKART 54
MEAIHRFS PI LA+R K P +L P RKL+ SSP+ + P + +
Sbjct: 1 MEAIHRFSFRLFPISLAERCRK--PSLLPPNFRKLIHRPISSSPNIPKFIPV-PKTYSSS 57
Query: 55 TSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVM 114
+++I+KAGW LGLG+ KK LP IV+AGDPVLHEPAREVDP EIGSE++Q IIDDM+ M
Sbjct: 58 STSIAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVQKIIDDMILTM 117
Query: 115 RSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSD 174
R APGVGLAAPQIG+PLR+I+ NPKLK KS+
Sbjct: 118 RKAPGVGLAAPQIGIPLRVII------------------------------NPKLKSKSN 147
Query: 175 RTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234
+TALFFEGCLSV+G+RAVVERYLD+EV G DRDG PIKVDA+GWQARILQHECDHLDGTL
Sbjct: 148 KTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQARILQHECDHLDGTL 207
Query: 235 YVDKMVPKTFRIVENLDLPLAEGCPKLG 262
YVDKMVP+TFR ENL LPLAEGCPKLG
Sbjct: 208 YVDKMVPRTFRTTENLTLPLAEGCPKLG 235
>gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula]
Length = 257
Score = 316 bits (809), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 150/222 (67%), Positives = 182/222 (81%)
Query: 41 SNDVTFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGS 100
+N + S + ++ S +S L + KLP IV+AGDPV+HEPAREVD EI S
Sbjct: 33 NNKIQLSSTKFSKFGSTLSSPSSETALLRKTVNKLPYIVKAGDPVIHEPAREVDHSEIKS 92
Query: 101 ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFD 160
++IQNIIDDM+ VMR APGVG+AAPQIG+PLRIIVLED +E+I Y ++EE KA DRRPFD
Sbjct: 93 DKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRIIVLEDKEEFICYNTEEETKAQDRRPFD 152
Query: 161 LLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQA 220
LL+ILNPKLK KS+RTA FFEGCLSV+ ++A+VERYLD+EVTG DR G+PIK++A+GWQA
Sbjct: 153 LLVILNPKLKNKSNRTAFFFEGCLSVDRFQALVERYLDVEVTGFDRYGEPIKINASGWQA 212
Query: 221 RILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEGCPKLG 262
RILQHECDHLDGTLYVDKMVP+TFR +N+DLPLA GCPKLG
Sbjct: 213 RILQHECDHLDGTLYVDKMVPRTFRSWKNVDLPLARGCPKLG 254
>gi|388499878|gb|AFK38005.1| unknown [Medicago truncatula]
Length = 267
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/270 (60%), Positives = 197/270 (72%), Gaps = 16/270 (5%)
Query: 1 MEAIHRFSVCHLPICLAKRHI----KSAPIILCPTRKLVSSPDFSNDVTFSPHRKARTTS 56
MEA+H C LP+ K + + P L P K ++ +
Sbjct: 4 MEALHL--RCILPLSRTKNSLFTLQTTTPFSLSPFSKPPPL------TLTLSSSSSQNAT 55
Query: 57 AISKAGWLLG----LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVK 112
++AG+ G + KK LP+ V+AGDPVLHEPA+EVDP EI S+++Q IIDDM++
Sbjct: 56 IRTRAGFFFGRTKDDKKKKKMDLPDTVKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIR 115
Query: 113 VMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKK 172
VMR APGVGLAAPQIGV RIIVLEDT+E+ISY KE +KA DR PFDLL+ILNPKLK
Sbjct: 116 VMRKAPGVGLAAPQIGVSSRIIVLEDTEEFISYAPKEVLKAQDRHPFDLLVILNPKLKST 175
Query: 173 SDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232
S RTALFFEGCLSV+G+RAVVER+LD+EVTGLDR+G+ IK+ A+GWQARILQHECDHLDG
Sbjct: 176 SKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRNGEQIKITASGWQARILQHECDHLDG 235
Query: 233 TLYVDKMVPKTFRIVENLDLPLAEGCPKLG 262
TLYVDKMVP+TFR VEN+DLPLA+GCP LG
Sbjct: 236 TLYVDKMVPRTFRTVENMDLPLAQGCPNLG 265
>gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
gi|78101136|pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
gi|78101137|pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
gi|78101138|pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
gi|78101139|pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
gi|78101140|pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
Length = 197
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/188 (79%), Positives = 170/188 (90%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
LPEIV +GDPVLHE AREVDPGEIGSERIQ IIDDM+KVMR APGVGLAAPQIGVPLRII
Sbjct: 3 LPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRII 62
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VLEDTKEYISY KEEI A +RR FDL++++NP LK++S++ ALFFEGCLSV+G+RA VE
Sbjct: 63 VLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVE 122
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
RYL++ VTG DR G+ I+V+A+GWQARILQHECDHLDG LYVDKMVP+TFR V+NLDLPL
Sbjct: 123 RYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDLPL 182
Query: 255 AEGCPKLG 262
AEGCPKLG
Sbjct: 183 AEGCPKLG 190
>gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
gi|241924497|gb|EER97641.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor]
Length = 193
Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/190 (76%), Positives = 169/190 (88%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A P V+AGDPVLHEPA+EV PG++ SE++Q IID MV VMR APGVGLAAPQIGVPLR
Sbjct: 2 AVTPGTVKAGDPVLHEPAQEVAPGDVRSEKVQGIIDRMVDVMRKAPGVGLAAPQIGVPLR 61
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
IIVLEDT+EYISY K+EI+A DRRPFDLL+I+NPK+K S RTALFFEGCLSV+GYRAV
Sbjct: 62 IIVLEDTQEYISYAPKKEIEAQDRRPFDLLIIINPKIKNTSKRTALFFEGCLSVDGYRAV 121
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
VER+LD+EV+GLDR+G IKV A+GWQARILQHECDHL+GTLYVD+MVP+TFRIV+NLDL
Sbjct: 122 VERHLDVEVSGLDRNGSAIKVQASGWQARILQHECDHLEGTLYVDRMVPRTFRIVDNLDL 181
Query: 253 PLAEGCPKLG 262
PL GCP+LG
Sbjct: 182 PLPIGCPQLG 191
>gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 259
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 142/184 (77%), Positives = 169/184 (91%)
Query: 79 VQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLED 138
V+AGDPVLHEPA+EV PG++ SE+IQ+IID M+ VMR APGVGLAAPQIGVPL+IIVLED
Sbjct: 74 VKAGDPVLHEPAQEVSPGDVPSEKIQDIIDQMIAVMRKAPGVGLAAPQIGVPLKIIVLED 133
Query: 139 TKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLD 198
T+EYISY SKE+I A DR PFDLL+++NPKLKK S RTA F+EGCLSV+GYRAVVER+LD
Sbjct: 134 TQEYISYVSKEDIDAQDRCPFDLLVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLD 193
Query: 199 IEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEGC 258
+EV+GLDR+G+P+KV+A+GWQARILQHECDHL+GTLYVDKMVP+TFR V+NL+LPLA GC
Sbjct: 194 VEVSGLDRNGRPMKVEASGWQARILQHECDHLEGTLYVDKMVPRTFRTVDNLNLPLATGC 253
Query: 259 PKLG 262
P LG
Sbjct: 254 PPLG 257
>gi|357135197|ref|XP_003569198.1| PREDICTED: peptide deformylase 1A, chloroplastic-like [Brachypodium
distachyon]
Length = 258
Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 169/187 (90%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P V+AGDPVLHEPA+ V P ++ SE++Q++ID M+ VMR APGVGLAAPQIGVPL+IIV
Sbjct: 70 PGTVKAGDPVLHEPAQYVAPEDVPSEKVQSVIDQMIAVMRKAPGVGLAAPQIGVPLKIIV 129
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LEDT+EYISY K++I A DRRPFDLL+I+NPKLKK S RTALF+EGCLSV+GYRAVVER
Sbjct: 130 LEDTQEYISYAPKKDIDAQDRRPFDLLVIINPKLKKTSKRTALFYEGCLSVDGYRAVVER 189
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLA 255
+LD+EV+GLDR+G P+KV+A+GWQARILQHECDHL+GTLYVDKMVP+TFR+V+NLDLPLA
Sbjct: 190 HLDVEVSGLDRNGCPVKVEASGWQARILQHECDHLEGTLYVDKMVPRTFRVVDNLDLPLA 249
Query: 256 EGCPKLG 262
GCP LG
Sbjct: 250 TGCPPLG 256
>gi|226729275|sp|B6RGY0.1|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A, chloroplastic; Short=OsPDF1A;
Short=PDF 1A; Flags: Precursor
gi|164633052|gb|ABY64739.1| peptide deformylase 1A [Oryza sativa Japonica Group]
Length = 260
Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/187 (75%), Positives = 169/187 (90%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P V+AGDPVLHEPA++V PG+I SE++Q +ID MV VMR APGVGLAAPQIGVPL+IIV
Sbjct: 72 PGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIV 131
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LEDT+EYISY K++I+A DRRPFDLL+I+NPKLK S RTALFFEGCLSV+GYRA+VER
Sbjct: 132 LEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVER 191
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLA 255
+LD+EV+GLDR+G+PIKV+A+GWQARILQHECDHL+GTLYVD MVP+TFRIV+NLDLPL
Sbjct: 192 HLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLP 251
Query: 256 EGCPKLG 262
GCP +G
Sbjct: 252 VGCPPIG 258
>gi|226510000|ref|NP_001140879.1| uncharacterized protein LOC100272955 precursor [Zea mays]
gi|194701558|gb|ACF84863.1| unknown [Zea mays]
gi|414887886|tpg|DAA63900.1| TPA: hypothetical protein ZEAMMB73_573089 [Zea mays]
Length = 256
Score = 303 bits (777), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/187 (75%), Positives = 167/187 (89%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P V+AGDPVLHEPA+EV PG++ SE++Q +ID MV VMR APGVGLAAPQIGVPLRIIV
Sbjct: 68 PGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPLRIIV 127
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LEDT+EYISY K++I+A DRRPFDLL+I+NPK+K S RTALFFEGCLSV+GYRAVVER
Sbjct: 128 LEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVDGYRAVVER 187
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLA 255
+LD+EV+GLDR+G +KV A+GWQARILQHECDHL+GTLYVDKMV +TFR+VENLDLPL
Sbjct: 188 HLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKMVARTFRVVENLDLPLP 247
Query: 256 EGCPKLG 262
GCP+LG
Sbjct: 248 TGCPQLG 254
>gi|414887885|tpg|DAA63899.1| TPA: hypothetical protein ZEAMMB73_573089 [Zea mays]
Length = 260
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 142/187 (75%), Positives = 167/187 (89%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P V+AGDPVLHEPA+EV PG++ SE++Q +ID MV VMR APGVGLAAPQIGVPLRIIV
Sbjct: 68 PGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPLRIIV 127
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LEDT+EYISY K++I+A DRRPFDLL+I+NPK+K S RTALFFEGCLSV+GYRAVVER
Sbjct: 128 LEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVDGYRAVVER 187
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLA 255
+LD+EV+GLDR+G +KV A+GWQARILQHECDHL+GTLYVDKMV +TFR+VENLDLPL
Sbjct: 188 HLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKMVARTFRVVENLDLPLP 247
Query: 256 EGCPKLG 262
GCP+LG
Sbjct: 248 TGCPQLG 254
>gi|357455171|ref|XP_003597866.1| Peptide deformylase 1A [Medicago truncatula]
gi|355486914|gb|AES68117.1| Peptide deformylase 1A [Medicago truncatula]
Length = 295
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 150/260 (57%), Positives = 182/260 (70%), Gaps = 38/260 (14%)
Query: 41 SNDVTFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGS 100
+N + S + ++ S +S L + KLP IV+AGDPV+HEPAREVD EI S
Sbjct: 33 NNKIQLSSTKFSKFGSTLSSPSSETALLRKTVNKLPYIVKAGDPVIHEPAREVDHSEIKS 92
Query: 101 ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR---------------------------- 132
++IQNIIDDM+ VMR APGVG+AAPQIG+PLR
Sbjct: 93 DKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRMILEPPPRSFGPFVIRFRYRATHHLYSR 152
Query: 133 ----------IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEG 182
IIVLED +E+I Y ++EE KA DRRPFDLL+ILNPKLK KS+RTA FFEG
Sbjct: 153 TKPNSVGREWIIVLEDKEEFICYNTEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEG 212
Query: 183 CLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
CLSV+ ++A+VERYLD+EVTG DR G+PIK++A+GWQARILQHECDHLDGTLYVDKMVP+
Sbjct: 213 CLSVDRFQALVERYLDVEVTGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMVPR 272
Query: 243 TFRIVENLDLPLAEGCPKLG 262
TFR +N+DLPLA GCPKLG
Sbjct: 273 TFRSWKNVDLPLARGCPKLG 292
>gi|351725187|ref|NP_001235292.1| uncharacterized protein LOC100306710 [Glycine max]
gi|255629341|gb|ACU15015.1| unknown [Glycine max]
Length = 223
Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 145/204 (71%), Positives = 165/204 (80%), Gaps = 7/204 (3%)
Query: 59 SKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP 118
S +GWL G KL +IV+AG+ VLH A EV+ EI SER+Q IIDDMV+VMR AP
Sbjct: 25 SGSGWLAG-------KLAKIVKAGEAVLHSRAEEVEAIEIKSERVQKIIDDMVRVMRKAP 77
Query: 119 GVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL 178
GVGLAAPQIG+PLRIIVLED +Y++Y S +E+KA DR PFDLL+ILNPKLK + RTAL
Sbjct: 78 GVGLAAPQIGIPLRIIVLEDKIQYMAYYSNQELKAQDRTPFDLLVILNPKLKNTTTRTAL 137
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
FFEGCLSV GY AVVERYLD+EV G DR G+PIK++ATGWQARILQHECDHLDGTLYVDK
Sbjct: 138 FFEGCLSVPGYSAVVERYLDVEVAGFDRYGEPIKINATGWQARILQHECDHLDGTLYVDK 197
Query: 239 MVPKTFRIVENLDLPLAEGCPKLG 262
MVP+TFR EN PLA GCPKLG
Sbjct: 198 MVPRTFRAPENSYKPLAHGCPKLG 221
>gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis]
Length = 305
Score = 286 bits (731), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 136/189 (71%), Positives = 158/189 (83%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
LPEIVQAGDPVLHE A EV EIGSERIQ IIDDM+ VM +APG GLAAPQ+GVPL+II
Sbjct: 116 LPEIVQAGDPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQII 175
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VLED +EYI + KEE +A +R PFDLL+I+NPKLK K +TA FFEGCLSVNG+R +VE
Sbjct: 176 VLEDKEEYIRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVE 235
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
R+L++EVTG RDG PIK++ATGW+ARILQHECDHL G LYVDK++P+TFR VEN LPL
Sbjct: 236 RHLEVEVTGFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKLIPRTFRTVENFRLPL 295
Query: 255 AEGCPKLGV 263
A GCPK GV
Sbjct: 296 ATGCPKPGV 304
>gi|357455169|ref|XP_003597865.1| Peptide deformylase 1A [Medicago truncatula]
gi|124359186|gb|ABD28402.2| Formylmethionine deformylase [Medicago truncatula]
gi|355486913|gb|AES68116.1| Peptide deformylase 1A [Medicago truncatula]
Length = 266
Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 128/192 (66%), Positives = 159/192 (82%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L + K++LP IVQAGDPVLHEPAREVD EI S++IQ IID M+ VMR+APG+ L+A +
Sbjct: 56 LSKTLKSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQK 115
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
IG+PLRIIVLE+ KE + ++E K DRRPFDLL+ILNPKLK KS++T LFFEGCLSV
Sbjct: 116 IGIPLRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSV 175
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
+G++AVVERYLD+EV G DR G+PIK++A+GW ARILQHECDHLDGTLYVDKMVP+TFR
Sbjct: 176 HGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS 235
Query: 247 VENLDLPLAEGC 258
EN+++ +A
Sbjct: 236 WENINMSIARAV 247
>gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica Group]
gi|222618667|gb|EEE54799.1| hypothetical protein OsJ_02204 [Oryza sativa Japonica Group]
Length = 155
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/153 (79%), Positives = 141/153 (92%)
Query: 110 MVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKL 169
MV VMR APGVGLAAPQIGVPL+IIVLEDT+EYISY K++I+A DRRPFDLL+I+NPKL
Sbjct: 1 MVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKL 60
Query: 170 KKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDH 229
K S RTALFFEGCLSV+GYRA+VER+LD+EV+GLDR+G+PIKV+A+GWQARILQHECDH
Sbjct: 61 KTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDH 120
Query: 230 LDGTLYVDKMVPKTFRIVENLDLPLAEGCPKLG 262
L+GTLYVD MVP+TFRIV+NLDLPL GCP +G
Sbjct: 121 LEGTLYVDTMVPRTFRIVDNLDLPLPVGCPPIG 153
>gi|168007592|ref|XP_001756492.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692531|gb|EDQ78888.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 191
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/186 (68%), Positives = 149/186 (80%), Gaps = 1/186 (0%)
Query: 79 VQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLED 138
VQAGDPVLH+PA EV IGS I+ I+DMV VMR+ PGVGLAAPQIGVPL+IIVLED
Sbjct: 1 VQAGDPVLHKPAEEVKRENIGSSLIEKTINDMVDVMRAGPGVGLAAPQIGVPLQIIVLED 60
Query: 139 TKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDR-TALFFEGCLSVNGYRAVVERYL 197
TKE +SY S EE +A R PFDLL+I+NPK++KK R TA FFEGCLSV GYRA+VER+
Sbjct: 61 TKELMSYTSPEECEAQQRSPFDLLVIINPKIEKKEGRGTAYFFEGCLSVEGYRALVERHS 120
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEG 257
++EVTGL RDG+P+ + A GW+ARILQHE DHL GTLYVDKMV +TFR ENL LPL G
Sbjct: 121 EVEVTGLGRDGRPLHLTAKGWKARILQHEYDHLQGTLYVDKMVKRTFRTTENLRLPLPSG 180
Query: 258 CPKLGV 263
CP+ GV
Sbjct: 181 CPRPGV 186
>gi|168014244|ref|XP_001759662.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689201|gb|EDQ75574.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/187 (67%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ QAGDPVLHEPA EV +IGS RI+ I+DMV VMR+ PGVGLAAPQIG+PL+IIVLE
Sbjct: 1 LAQAGDPVLHEPAEEVMREDIGSARIEKAINDMVDVMRAGPGVGLAAPQIGIPLQIIVLE 60
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLK-KKSDRTALFFEGCLSVNGYRAVVERY 196
DTKE +SY S EE +A R PFDLL+I+NPKL+ K S TA FFEGCLSV G+RA+VER+
Sbjct: 61 DTKELMSYTSPEECEAQQRTPFDLLVIINPKLEMKASGGTAFFFEGCLSVAGHRALVERH 120
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
L++EVTGL RDGQP+ A GW+ARILQHE DHL G LYVD+MV +TFR +NL LPL
Sbjct: 121 LEVEVTGLGRDGQPLHFTAKGWKARILQHEYDHLQGLLYVDRMVKRTFRSTDNLRLPLPS 180
Query: 257 GCPKLGV 263
GCP+ GV
Sbjct: 181 GCPRPGV 187
>gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula]
Length = 241
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/216 (55%), Positives = 147/216 (68%), Gaps = 16/216 (7%)
Query: 1 MEAIHRFSVCHLPICLAKRHI----KSAPIILCPTRKLVSSPDFSNDVTFSPHRKARTTS 56
MEA+H C LP+ K + + P L P K ++ +
Sbjct: 4 MEALHL--RCILPLSRTKNSLFTLQTTTPFSLSPFSKPPPL------TLTLSSSSSQNAT 55
Query: 57 AISKAGWLLG----LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVK 112
++AG+ G + KK LP+ V+AGDPVLHEPA+EVDP EI S+++Q IIDDM++
Sbjct: 56 IRTRAGFFFGRTKDDKKKKKMDLPDTVKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIR 115
Query: 113 VMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKK 172
VMR APGVGLAAPQIGV RIIVLEDT+E+ISY KE +KA DR PFDLL+ILNPKLK
Sbjct: 116 VMRKAPGVGLAAPQIGVSSRIIVLEDTEEFISYAPKEVLKAQDRHPFDLLVILNPKLKST 175
Query: 173 SDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDG 208
S RTALFFEGCLSV+G+RAVVER+LD+EVTGLDR+G
Sbjct: 176 SKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRNG 211
>gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group]
gi|113532854|dbj|BAF05237.1| Os01g0555800, partial [Oryza sativa Japonica Group]
Length = 121
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/119 (76%), Positives = 109/119 (91%)
Query: 144 SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTG 203
SY K++I+A DRRPFDLL+I+NPKLK S RTALFFEGCLSV+GYRA+VER+LD+EV+G
Sbjct: 1 SYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSG 60
Query: 204 LDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEGCPKLG 262
LDR+G+PIKV+A+GWQARILQHECDHL+GTLYVD MVP+TFRIV+NLDLPL GCP +G
Sbjct: 61 LDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLPVGCPPIG 119
>gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458569|gb|EEH55866.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 185
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/186 (53%), Positives = 128/186 (68%), Gaps = 1/186 (0%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIVQAG P L E A EV I + + Q +I +M+ + R GVGLAAPQIGVP RI VL
Sbjct: 1 EIVQAGTPCLREIAEEVPLSSIDTAKTQELIQEMLSICRGR-GVGLAAPQIGVPYRIFVL 59
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
EDT+E +S SK++++A DR+PF +++NP + S+ +A FFEGCLSV GYR +V RY
Sbjct: 60 EDTEEGMSDVSKKDLEAMDRKPFAAKVVINPVVTPVSNLSAAFFEGCLSVQGYRGLVRRY 119
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
L++ VTG DG P+ A GWQARI+QHE DHL+G LYVD+M +TFR V+ LD PL
Sbjct: 120 LEVRVTGYGGDGSPVDFVARGWQARIVQHEMDHLNGVLYVDRMDTRTFRRVDKLDEPLPP 179
Query: 257 GCPKLG 262
P+ G
Sbjct: 180 AHPEFG 185
>gi|356533469|ref|XP_003535286.1| PREDICTED: peptide deformylase 1A, chloroplastic-like [Glycine max]
Length = 264
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/145 (66%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Query: 59 SKAGWLLGLG-QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSA 117
++AGW LGLG NKK LP+ V+ GDPVLHEPA++VDP EI ER+Q IIDDM++VMR A
Sbjct: 37 ARAGWFLGLGANNKKTNLPDTVKVGDPVLHEPAQDVDPIEIKLERVQKIIDDMIQVMRKA 96
Query: 118 PGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA 177
GVGLAAPQIG+PLRIIVLEDTKEYISY SKEE K DRRP DLL+ILNPKL KK R A
Sbjct: 97 SGVGLAAPQIGIPLRIIVLEDTKEYISYVSKEEAKTQDRRPADLLVILNPKLDKKGKRIA 156
Query: 178 LFFEGCLSVNGYRAVVERYLDIEVT 202
LFFEGCLS A V ++++ ++
Sbjct: 157 LFFEGCLSNGKGGADVVQWVETAIS 181
>gi|302830440|ref|XP_002946786.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
nagariensis]
gi|300267830|gb|EFJ52012.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f.
nagariensis]
Length = 257
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/189 (51%), Positives = 124/189 (65%), Gaps = 7/189 (3%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
N +P IVQAG PVL + AREV P +GSE ++N++ M VMR+APGVGLAAPQIG
Sbjct: 42 NNIPKPMPAIVQAGTPVLRQVAREVPPELLGSEWLRNLVATMTSVMRAAPGVGLAAPQIG 101
Query: 129 VPLRIIVLEDTKEYISYQSK------EEIKAFDRRPFDLLMILNPK-LKKKSDRTALFFE 181
P R+IVLED +EYI Q+ + + A +RR F L+++NP+ L+ A FFE
Sbjct: 102 EPWRVIVLEDREEYIVRQAASGMYDDDTLAAMERRAFGPLVLVNPRGLRPVGHEGAAFFE 161
Query: 182 GCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
GCLSV GY AVV RY +E+ +D G P+ V A+GW ARILQHE DHL G LYVD+M
Sbjct: 162 GCLSVRGYVAVVPRYRIVELEAVDPAGLPVVVRASGWMARILQHEFDHLQGILYVDRMAA 221
Query: 242 KTFRIVENL 250
+F ENL
Sbjct: 222 TSFATSENL 230
>gi|162455696|ref|YP_001618063.1| polypeptide deformylase [Sorangium cellulosum So ce56]
gi|161166278|emb|CAN97583.1| polypeptide deformylase [Sorangium cellulosum So ce56]
Length = 203
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 132/201 (65%), Gaps = 12/201 (5%)
Query: 74 KLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
+LP IV AG VL +PA V P EIG++R+++++ MV VMR APGVGLAAPQIGV ++
Sbjct: 2 ELPPIVLAGRAVLRKPAAPVPPEEIGTKRLKHLVSTMVSVMRKAPGVGLAAPQIGVDQQV 61
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLK--------KKSDRTALFFEGCLS 185
IVLED++E +S + + R PF L +I+NP L+ A FFEGCLS
Sbjct: 62 IVLEDSEELMSRLTPGQRAERGRVPFRLRVIINPTLRVLAPSLPDAAGAGRATFFEGCLS 121
Query: 186 VNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
V GY A+VER L +EV+G+D DG+ ++ +ATGW ARILQHE DHL GTLYVD+MV ++F
Sbjct: 122 VPGYMALVERDLSVEVSGVDEDGKEVRWEATGWPARILQHEVDHLRGTLYVDRMVTRSFC 181
Query: 246 IVEN----LDLPLAEGCPKLG 262
E L L +AE LG
Sbjct: 182 SNEEAKLLLSLSVAEARAALG 202
>gi|145342766|ref|XP_001416260.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
CCE9901]
gi|144576485|gb|ABO94553.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus
CCE9901]
Length = 274
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 121/186 (65%), Gaps = 1/186 (0%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++VQAG P L + AR VD EI S IQ +I +M++V R A GVGLAAPQ+G R++VL
Sbjct: 54 DVVQAGAPALRDVARAVDVDEIDSTEIQELIAEMLRVCR-ARGVGLAAPQLGARRRVVVL 112
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
EDT E +S ++ E + R F +I+NP L D +A FFEGCLSV GYRAVV R+
Sbjct: 113 EDTTEGMSDETSEALAMKRREAFRAKVIVNPTLTPIGDASAAFFEGCLSVAGYRAVVRRH 172
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
L + G DG+P+ +A GW+ARILQHE DHLDG LY D+M +T R V+ LD PL
Sbjct: 173 LRVRCRGYGGDGKPVDFEAVGWEARILQHEVDHLDGVLYTDRMESRTLRRVDLLDEPLPG 232
Query: 257 GCPKLG 262
P+ G
Sbjct: 233 DHPEFG 238
>gi|338534588|ref|YP_004667922.1| peptide deformylase [Myxococcus fulvus HW-1]
gi|337260684|gb|AEI66844.1| peptide deformylase [Myxococcus fulvus HW-1]
Length = 199
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 117/173 (67%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAGDPVL AR++ P EI S I +I+ M MR APGVGLAAPQ+G+ LR++V+
Sbjct: 4 KIVQAGDPVLRRKARDLTPEEIASPEIARLIEQMRDTMRDAPGVGLAAPQVGIGLRLVVV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY + S++E++A +R+P +++NP L + A F EGCLSV G+ A+V R
Sbjct: 64 EDRAEYQAGLSEKELEARERKPVPFHVLINPTLVVEDAAPAEFHEGCLSVTGFAALVARA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V LD G+P+ + A GW ARILQHE DHLDGTLYVD+M ++F EN
Sbjct: 124 SAVRVEALDEHGKPVTLRARGWYARILQHELDHLDGTLYVDRMETRSFTTAEN 176
>gi|308801120|ref|XP_003075341.1| Peptide deformylase (ISS) [Ostreococcus tauri]
gi|116061895|emb|CAL52613.1| Peptide deformylase (ISS) [Ostreococcus tauri]
Length = 243
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 121/178 (67%), Gaps = 13/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++VQAG P L + A+E+DP EI S IQ +I +MV+VMR A GVGLAAPQ+G+ R+IVL
Sbjct: 35 DVVQAGAPALRDRAKEIDPREIDSAEIQELIGEMVRVMR-ARGVGLAAPQLGIRKRVIVL 93
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
EDT+E +S S EE+ + R PF +I+NP L++ D +A+FFEGCLSV GYRA
Sbjct: 94 EDTEEGMSDSSAEELASQKRAPFACTVIINPTLERVGDASAIFFEGCLSVAGYRACA--- 150
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
TG + I + ATGWQARILQHE DHLDG LY D+M +TFR V+ L PL
Sbjct: 151 ----ATG----NRSIYI-ATGWQARILQHELDHLDGVLYTDRMESRTFRRVDMLSEPL 199
>gi|108759554|ref|YP_631592.1| peptide deformylase [Myxococcus xanthus DK 1622]
gi|108463434|gb|ABF88619.1| peptide deformylase [Myxococcus xanthus DK 1622]
Length = 201
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 114/173 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAGDPVL AR++ P EI S +I+ M MR APGVGLAAPQ+GV LR++V+
Sbjct: 4 KIVQAGDPVLRRKARDLTPEEIASPETARLIEQMRDTMRDAPGVGLAAPQVGVGLRVVVI 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY + S+ E A R+P +++NP+L + A F EGCLSV+G+ A+V R
Sbjct: 64 EDRPEYQAGLSESERAARGRKPVPFHVLINPRLVVEDAAPAEFHEGCLSVSGFAALVPRA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V LD GQP+ V A GW ARILQHE DHLDGTLYVD+M ++F EN
Sbjct: 124 CAVRVDALDEHGQPVTVQARGWYARILQHELDHLDGTLYVDRMETRSFTTAEN 176
>gi|405351354|ref|ZP_11022837.1| Peptide deformylase [Chondromyces apiculatus DSM 436]
gi|397093245|gb|EJJ23968.1| Peptide deformylase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 200
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 114/173 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAG+PVL AR++ EI S Q +I+ M MR APGVGLAAPQ+GV LR+IV+
Sbjct: 4 KIVQAGEPVLRRKARDLTLEEIASPETQRLIEQMRDTMRDAPGVGLAAPQVGVGLRLIVV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY + S +++ A +R P +++NPKL + TA F EGCLSV+GY A+V R
Sbjct: 64 EDRAEYQTGLSAKDLAARERSPVAFHVLINPKLVVEDATTAEFHEGCLSVSGYAALVARA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V LD G P+ V A GW ARILQHE DHLDG LYVD+M ++F EN
Sbjct: 124 RGVRVEALDERGAPVTVRARGWYARILQHELDHLDGALYVDRMESRSFATAEN 176
>gi|326511637|dbj|BAJ91963.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514272|dbj|BAJ92286.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 78/102 (76%), Positives = 95/102 (93%)
Query: 161 LLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQA 220
L +++NPKLKK S RTA F+EGCLSV+GYRAVVER+LD+EV+GLDR+G+P+KV+A+GWQA
Sbjct: 18 LWVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEASGWQA 77
Query: 221 RILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEGCPKLG 262
RILQHECDHL+GTLYVDKMVP+TFR V+NL+LPLA GCP LG
Sbjct: 78 RILQHECDHLEGTLYVDKMVPRTFRTVDNLNLPLATGCPPLG 119
>gi|383456702|ref|YP_005370691.1| peptide deformylase [Corallococcus coralloides DSM 2259]
gi|380732545|gb|AFE08547.1| peptide deformylase [Corallococcus coralloides DSM 2259]
Length = 208
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 114/173 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAG+PVL + ARE+ P EIGSE + +I M MR APGVGLAAPQ+GV LR++V+
Sbjct: 4 KIVQAGEPVLRQRARELTPEEIGSEDTRRLIQLMRDTMRDAPGVGLAAPQVGVGLRLVVI 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY + S ++ +R P +++NPKL + F EGCLSVNG A+V R
Sbjct: 64 EDRAEYQAGASPADLALRERAPVAFHVLINPKLVVEDPTPMEFHEGCLSVNGLAALVARA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V LD +GQP+ V A GW ARI+QHE DHLDGTLYVD+M ++ EN
Sbjct: 124 RGVRVEALDENGQPVTVSARGWYARIIQHELDHLDGTLYVDRMETRSLTTQEN 176
>gi|442321494|ref|YP_007361515.1| peptide deformylase [Myxococcus stipitatus DSM 14675]
gi|441489136|gb|AGC45831.1| peptide deformylase [Myxococcus stipitatus DSM 14675]
Length = 200
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 117/173 (67%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAG+PVL + AR++ P E+GS IQ +I M MR APGVGLAAPQ+GV LR++V+
Sbjct: 4 KIVQAGEPVLRQKARDLTPEEMGSPEIQRLIVLMRDTMRDAPGVGLAAPQVGVGLRLVVI 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY + + ++ +R P +++NPKL + A F+EGCLSV+G+ A+V R
Sbjct: 64 EDRSEYQAGVAPADLADRERTPVPFHVLINPKLTVEDPAPAEFYEGCLSVSGFAALVARA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V LD G+P+ + A GW ARILQHE DHLDGTLYVD+M ++F EN
Sbjct: 124 RGVRVDALDEQGRPVTIHARGWYARILQHELDHLDGTLYVDRMETRSFVTGEN 176
>gi|444910252|ref|ZP_21230439.1| Peptide deformylase [Cystobacter fuscus DSM 2262]
gi|444719508|gb|ELW60302.1| Peptide deformylase [Cystobacter fuscus DSM 2262]
Length = 197
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 115/173 (66%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAG+PVL + AR++ P E+ S + +I M MR APGVGLAAPQ+GV +R++V+
Sbjct: 4 KIVQAGEPVLRQRARDLTPEEMTSPATRQLISLMRDTMRDAPGVGLAAPQVGVDVRLVVI 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY++ E+ A +R P D +++NP+L + A F EGCLSV+G+ A+V R
Sbjct: 64 EDRAEYMAGLPAAELAAREREPVDFHVLINPRLTVEDATPAEFQEGCLSVSGFLALVRRA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V D GQP A GW ARILQHE DHLDGTLY+D+M P++F ++N
Sbjct: 124 RGVRVEAFDEQGQPFSRSARGWYARILQHEVDHLDGTLYIDRMEPRSFSTLDN 176
>gi|255082960|ref|XP_002504466.1| predicted protein [Micromonas sp. RCC299]
gi|226519734|gb|ACO65724.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 126/201 (62%), Gaps = 18/201 (8%)
Query: 62 GWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVG 121
G L+ L + ++ EIVQAG PVL + A E+ I S IQ +I +M+ +MR+ GVG
Sbjct: 55 GNLINLAKGQR----EIVQAGTPVLRQMAEEIPLDRIDSATIQELIQEMISIMRNR-GVG 109
Query: 122 LAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFE 181
LAAPQIGVP RI V+EDT+E +S SK+++ A +R PF +I+NP + S+++ FFE
Sbjct: 110 LAAPQIGVPYRIFVMEDTEEGMSDVSKDDLVAQERAPFPAKVIINPTVTPVSNQSCAFFE 169
Query: 182 GCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
GCLSV V G DG+P+ A GWQARI QHE DHLDG LYVD+M
Sbjct: 170 GCLSVR-------------VRGYGGDGKPVDFVAKGWQARIAQHEMDHLDGVLYVDRMDS 216
Query: 242 KTFRIVENLDLPLAEGCPKLG 262
+TFR V+ LD PL P+LG
Sbjct: 217 RTFRRVDLLDQPLPGAHPELG 237
>gi|412985711|emb|CCO19157.1| peptide deformylase [Bathycoccus prasinos]
Length = 260
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 127/178 (71%), Gaps = 1/178 (0%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAG+ L+E ++EV+ G+I S +Q ++ +M+++++ GVGLAAPQIGV RI V+
Sbjct: 35 DIVQAGEACLYERSKEVEEGDIASTEVQELVSEMLRIVK-GRGVGLAAPQIGVKKRIFVM 93
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
EDT+E +S +S+EE + R PF +++NP L D +A F EGCLSV GYRA+V R+
Sbjct: 94 EDTEEGMSDESEEERERKKRYPFKAKVVINPVLIPIGDASAAFMEGCLSVQGYRALVRRH 153
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
L +++ G+ DG+PI VD TGW ARI QHE DHL+G LYVD+M +T R V+ ++ P+
Sbjct: 154 LKVKLKGVAPDGKPIDVDLTGWPARIAQHEMDHLNGVLYVDRMEKRTLRRVDKVNAPV 211
>gi|53804337|ref|YP_113830.1| peptide deformylase [Methylococcus capsulatus str. Bath]
gi|53758098|gb|AAU92389.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
Length = 191
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 115/173 (66%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAG+PVL + AR + P EI S +Q +I M + MR APGVGLAAPQIG L++ V+
Sbjct: 9 KIVQAGEPVLRQRARPLSPEEIRSAAVQALIGHMRETMRDAPGVGLAAPQIGQGLQLAVI 68
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED +Y S EE+ A R P +I+NP++ +S+ T +F EGCLS+ G+ A VER
Sbjct: 69 EDRADYHRGLSAEELAARGREPVPFHVIVNPEIVARSEETDVFHEGCLSLAGFSARVERA 128
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V+ LD G+P ++A+GW ARILQHE DHL G LY+D+M P++F N
Sbjct: 129 RWVRVSCLDHRGEPQTIEASGWYARILQHEIDHLHGRLYIDRMDPRSFTTQPN 181
>gi|94970942|ref|YP_592990.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
gi|94552992|gb|ABF42916.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
Length = 208
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 112/173 (64%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++VQAG+PVL PA + EI S I +I+DM + APGVGLAAPQ+GVP+++ ++
Sbjct: 16 KLVQAGEPVLRTPAEPLAIKEIASREIARLIEDMRDTLEDAPGVGLAAPQVGVPIQLAII 75
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY E++ R P +I+NP LK FFEGCLSV G+ AVV RY
Sbjct: 76 EDRAEYSKDIPTEQLAERGRVPVPFHVIINPVLKPLGKSQVDFFEGCLSVAGFIAVVPRY 135
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ VT LD +G +++A+GW ARILQHE DHL+GTLYVD+M +TF +EN
Sbjct: 136 RKVRVTCLDENGAQRRIEASGWYARILQHEIDHLNGTLYVDRMRSQTFASLEN 188
>gi|76253777|ref|NP_001028902.1| peptide deformylase, mitochondrial [Danio rerio]
gi|66911060|gb|AAH97196.1| Zgc:114141 [Danio rerio]
Length = 247
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 131/240 (54%), Gaps = 18/240 (7%)
Query: 11 HLPICLAKRHIKSAPI-ILCPTRKLVSSPDFSNDVTFSPHRKARTTSAISKAGWLLGLGQ 69
HL + H+ S+P+ IL P +N T SP RT S K L +
Sbjct: 10 HLVLRSQSSHVHSSPVRILLPLS--------ANTCTASP----RTHSTNVKVRSYLQYMK 57
Query: 70 NKKAKLP-----EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAA 124
K P + Q GDPVL A EV+PG I +Q +I +VKVMR VGL+A
Sbjct: 58 RKVQGSPVPPYNHVCQVGDPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSA 117
Query: 125 PQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
PQIGVPLRI+ LE K+ + S ++A L++ +NP+L+ RT +F E C
Sbjct: 118 PQIGVPLRILALEYPKKMLEESSTASVEARGLVAVPLMIFINPQLRVLDGRTVIFQEACE 177
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
S++GY A V RY+ +EV+GL+ + + A+GW ARILQHE DHL+G LY+D M KTF
Sbjct: 178 SISGYSASVPRYVSVEVSGLNEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHMDSKTF 237
>gi|374312869|ref|YP_005059299.1| peptide deformylase [Granulicella mallensis MP5ACTX8]
gi|358754879|gb|AEU38269.1| peptide deformylase [Granulicella mallensis MP5ACTX8]
Length = 191
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 116/173 (67%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV G+PVL ++ + +I S IQN+ID M + +R APGVGLAAPQ+G L++ V+
Sbjct: 4 KIVTVGEPVLRATSQMLSKEQILSPSIQNLIDYMRETVRDAPGVGLAAPQVGESLQLAVI 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY ++ E+K R +++NP L+ + + TA FFEGCLS+ G+ A+V R
Sbjct: 64 EDKAEYHKNLTEAEMKERGRAAVPFHVLVNPVLEVRGESTATFFEGCLSLPGFTALVPRA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
++ VTGLD G+P ++A+GW ARILQHE DHL GTLY+D+M ++F +EN
Sbjct: 124 KEVRVTGLDHRGEPRVIEASGWYARILQHEIDHLHGTLYIDRMHARSFSSLEN 176
>gi|47221907|emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis]
Length = 198
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 111/169 (65%), Gaps = 4/169 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A VDPG +G +Q ++ +VKVMR VGL+APQIGVPLRI+ LE
Sbjct: 22 VCQVGDPVLRSRAAPVDPGAVGGAEVQKVVHTLVKVMRELDCVGLSAPQIGVPLRILALE 81
Query: 138 DTKEYI--SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
++ + S + E + +P L + +NP+L+ RTALF E C S++G+ A V R
Sbjct: 82 YPEKMLEESSPASREARGLSAQP--LRIFVNPQLRVLDGRTALFQEACESISGFSATVPR 139
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
YL +EV+GL+ +G+ ++ A GW ARILQHE DHLDG LY+D+M +TF
Sbjct: 140 YLSVEVSGLNENGEEVRWQARGWPARILQHEMDHLDGVLYIDRMDSRTF 188
>gi|37521298|ref|NP_924675.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
gi|35212295|dbj|BAC89670.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
Length = 275
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 114/175 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV+ GDPVL A+ ++ EI SE IQ +I M + MR APGVGLAAPQ+GV ++++V+
Sbjct: 95 EIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVI 154
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EYI S E + +R P +++NP L + + +A+FFEGCLS+ GY+ +V R
Sbjct: 155 EDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARA 214
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
+ V LD P+ + A GW ARILQHE DHL+G L VD+M +TF +EN D
Sbjct: 215 RVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLENYD 269
>gi|39930960|sp|Q7NJV3.1|DEF1_GLOVI RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
Length = 227
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 114/175 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV+ GDPVL A+ ++ EI SE IQ +I M + MR APGVGLAAPQ+GV ++++V+
Sbjct: 47 EIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVI 106
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EYI S E + +R P +++NP L + + +A+FFEGCLS+ GY+ +V R
Sbjct: 107 EDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARA 166
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
+ V LD P+ + A GW ARILQHE DHL+G L VD+M +TF +EN D
Sbjct: 167 RVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLENYD 221
>gi|410907161|ref|XP_003967060.1| PREDICTED: peptide deformylase, mitochondrial-like [Takifugu
rubripes]
Length = 212
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 107/169 (63%), Gaps = 4/169 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A VDP I IQ I+ +VKVMR VGL+APQIGVPLRI+ LE
Sbjct: 36 VCQVGDPVLRSRAAAVDPAAIRGAEIQKTINTLVKVMRKLDCVGLSAPQIGVPLRILALE 95
Query: 138 DTKEYI--SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
++ + S + E + +P L + +NP L+ RT LF E C S++GY A V R
Sbjct: 96 YPEKMLEESSPASREARGLSAQP--LRIFVNPHLRVLDGRTVLFQEACESISGYSATVPR 153
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
YL +EV+GL+ G+ + +A+GW ARILQHE DHLDG LYVD+M +TF
Sbjct: 154 YLSVEVSGLNEKGEDVTWEASGWPARILQHEMDHLDGVLYVDRMDSRTF 202
>gi|348503756|ref|XP_003439429.1| PREDICTED: peptide deformylase, mitochondrial-like [Oreochromis
niloticus]
Length = 257
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 4/169 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A VDP + IQ +I MV VMR VGL+APQIGVPLRI+ LE
Sbjct: 81 VCQVGDPVLRSHAAAVDPSAVTGPEIQRVIKTMVAVMRKLECVGLSAPQIGVPLRILALE 140
Query: 138 DTKEYI--SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
++ S + E++ +P L + +NP+L+ RT LF E C S++G+ A V R
Sbjct: 141 YPQKMFEESSPATREVRGLSVQP--LRIFVNPQLRVLDSRTVLFQEACESISGFSATVPR 198
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
YL +E++GL+ G+ + A+GW ARI+QHE DHLDG LY+D+M KTF
Sbjct: 199 YLSVELSGLNETGEAVTWQASGWSARIVQHEMDHLDGVLYIDRMDTKTF 247
>gi|388505606|gb|AFK40869.1| unknown [Lotus japonicus]
Length = 96
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/94 (79%), Positives = 85/94 (90%)
Query: 74 KLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
KLP+ V+AGDPVLHEPA+EV+P EI SER+Q IIDDM++VMR+APGVGLAAPQIGVPLRI
Sbjct: 2 KLPDTVKAGDPVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPLRI 61
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNP 167
IV+EDTKEYISY KEE KA DR PFDLL+ILNP
Sbjct: 62 IVVEDTKEYISYAPKEETKAQDRVPFDLLVILNP 95
>gi|196004180|ref|XP_002111957.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
gi|190585856|gb|EDV25924.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens]
Length = 201
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 106/174 (60%)
Query: 71 KKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVP 130
K +L I QAG+ VL E A VDP I S ++ +ID M+K MRS +G+AAPQ+G P
Sbjct: 25 KLLRLNYIRQAGESVLREKAAAVDPTAIVSTDVKKLIDRMIKTMRSHGDLGIAAPQLGRP 84
Query: 131 LRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYR 190
LRII LE TK ++SY + R L +++NP+LK + +E C S++
Sbjct: 85 LRIITLEITKRHLSYLQAQYRNVVQRDTVPLQVLINPQLKVLDNHKVAEYESCSSIHNCM 144
Query: 191 AVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
A V RY +EV+ LDR G I A GW +RILQHE DHLDG LYVDKM+ KTF
Sbjct: 145 AKVPRYTTVEVSALDRHGNRINYIADGWLSRILQHEVDHLDGLLYVDKMLSKTF 198
>gi|209736128|gb|ACI68933.1| Peptide deformylase, mitochondrial precursor [Salmo salar]
Length = 249
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 4/169 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q G+PVL A VDPG + +Q +I MVKVMR VGL+APQ+GVPLRI+ LE
Sbjct: 73 VCQVGEPVLRAQAAAVDPGAVQGPAVQEVIHTMVKVMRKFECVGLSAPQVGVPLRILALE 132
Query: 138 DTKEYI--SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ + S + E + P L + +NP+L+ RT LF E C S++G+ A V R
Sbjct: 133 FPERMLEDSLPAAREARGLTAVP--LRIFINPQLRVLDGRTVLFQEACESISGFSATVPR 190
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
YL +EV+GL+ +P+ +GW ARILQHE DHLDG LY+D+M KTF
Sbjct: 191 YLSVEVSGLNEKAEPVTWQVSGWPARILQHEMDHLDGVLYIDRMDSKTF 239
>gi|115378396|ref|ZP_01465558.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|115364586|gb|EAU63659.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
Length = 188
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 113/173 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAG+PVL + ARE+ P EI S ++ +I M MR APGVGLAAPQ+GV LR++V+
Sbjct: 4 KIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRLVVV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY E++ A +R+P D +++NP L + F EGCLSV G+ A+V R
Sbjct: 64 EDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALVPRA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V LD G P+ + A GW ARILQHE DHL+G LY+D+M P++F EN
Sbjct: 124 RGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEPRSFSTAEN 176
>gi|310819401|ref|YP_003951759.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|309392473|gb|ADO69932.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
Length = 200
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 113/173 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IVQAG+PVL + ARE+ P EI S ++ +I M MR APGVGLAAPQ+GV LR++V+
Sbjct: 4 KIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRLVVV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EY E++ A +R+P D +++NP L + F EGCLSV G+ A+V R
Sbjct: 64 EDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALVPRA 123
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ V LD G P+ + A GW ARILQHE DHL+G LY+D+M P++F EN
Sbjct: 124 RGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEPRSFSTAEN 176
>gi|225706662|gb|ACO09177.1| Peptide deformylase, mitochondrial precursor [Osmerus mordax]
Length = 248
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 103/167 (61%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A VDP + +Q +I MVKVMR VGL+APQ+GVPLRI+ LE
Sbjct: 72 VCQVGDPVLRSHAAPVDPSAVLGSEVQEVIGAMVKVMRKLQCVGLSAPQVGVPLRILALE 131
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + S +A L + +NP+L+ RT LF E C S++G+ A V RYL
Sbjct: 132 FPESMLKDVSPAAREARGVAVVPLRVFINPQLRVLDRRTVLFQEACESISGFSARVPRYL 191
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++EV+GL+ +P+ + +GW ARILQHE DHLDG LY+D M KTF
Sbjct: 192 EVEVSGLNEKAEPVTWEVSGWPARILQHEMDHLDGVLYIDHMDTKTF 238
>gi|295835488|ref|ZP_06822421.1| peptide deformylase [Streptomyces sp. SPB74]
gi|295825514|gb|EFG64289.1| peptide deformylase [Streptomyces sp. SPB74]
Length = 221
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 106/174 (60%), Gaps = 7/174 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL PA + G++ + ++ M + MR APGVGLAAPQIGVPLR+ VLE
Sbjct: 33 IVAAGDPVLRTPAAPYE-GQLPGPLLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 91
Query: 138 DTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ R P +++NP +R ALF+EGCLSV G++AVV R+
Sbjct: 92 DPATV-----PEEVRRMRGREPLPYRVLVNPHYAPAGERRALFYEGCLSVPGWQAVVARH 146
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+ + D G + + GW ARI+QHE DHLDGTLYVD+ +P++ ENL
Sbjct: 147 AVVRLRAEDEHGTALDEEVGGWAARIVQHETDHLDGTLYVDRALPRSLTSNENL 200
>gi|195571951|ref|XP_002103964.1| GD20712 [Drosophila simulans]
gi|194199891|gb|EDX13467.1| GD20712 [Drosophila simulans]
Length = 196
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 115/191 (60%), Gaps = 6/191 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV P +I S I IID MVKV+R VG+AAPQ+G+PLRIIV+E
Sbjct: 9 FTQIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL---MILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E Q K EI ++ R L + +NP+L+ S + EGC+SV GY A VE
Sbjct: 69 -FREGKQEQFKPEI--YEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVE 125
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
RY + + G+ + G P +++ GW ARI QHE DHL+GT+Y+DKM P TF + +
Sbjct: 126 RYDKVRIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMDPSTFNCILWEQINA 185
Query: 255 AEGCPKLGVHE 265
AEG + H+
Sbjct: 186 AEGRSAIWFHK 196
>gi|52345870|ref|NP_001004979.1| peptide deformylase (mitochondrial) precursor [Xenopus (Silurana)
tropicalis]
gi|49522476|gb|AAH75522.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
gi|89268627|emb|CAJ82379.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis]
Length = 239
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 102/168 (60%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+ Q GDPVL A V +I Q +++ MV+V+R+ VGL+APQIGVPLRI+ +
Sbjct: 62 RVTQTGDPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAV 121
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E A + PF L + +NP+++ RT F EGC SV G+ AVV RY
Sbjct: 122 AFPQQMYQAVPPEVRNAREMSPFPLQIFINPEMRIVDSRTLSFPEGCSSVQGFSAVVPRY 181
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+E+ G++ G+ + A GW ARI+QHE DHLDG LY+DKM P+TF
Sbjct: 182 YAVELQGMNPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKMDPRTF 229
>gi|359777018|ref|ZP_09280314.1| peptide deformylase [Arthrobacter globiformis NBRC 12137]
gi|359305615|dbj|GAB14143.1| peptide deformylase [Arthrobacter globiformis NBRC 12137]
Length = 225
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 105/164 (64%), Gaps = 5/164 (3%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
LP IVQAG PVL + A + G++ E + +I M KVM +APGVGLAAPQ+G+PL++
Sbjct: 28 LPPIVQAGHPVLRQHAAPFE-GQLEPEELSQLIVLMRKVMHAAPGVGLAAPQLGIPLQLA 86
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VLED E + A DR P + +LNP + + TA FFEGCLS++G +AVVE
Sbjct: 87 VLEDQFEI----DEVTATARDRAPLEFFAMLNPSYTRLGNGTAAFFEGCLSLSGLQAVVE 142
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
R + + L DG + D +GWQARI+QHE DH+ GTLY+D+
Sbjct: 143 RPDSVRLEYLTPDGGNVTKDFSGWQARIVQHETDHVHGTLYIDR 186
>gi|403527401|ref|YP_006662288.1| peptide deformylase [Arthrobacter sp. Rue61a]
gi|403229828|gb|AFR29250.1| peptide deformylase [Arthrobacter sp. Rue61a]
Length = 224
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 104/164 (63%), Gaps = 5/164 (3%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
LP IVQAG PVL + A D G+I + ++ M +VM APGVGLAAPQ+G+PL++
Sbjct: 34 LPSIVQAGHPVLRQLAAPYD-GQIDDAELAAFLERMKEVMHDAPGVGLAAPQLGIPLQLA 92
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VLED E E R P + I+NP+ + TA FFEGCLSV+GY+AVV
Sbjct: 93 VLEDKYEV----DPESAAVRHREPLEFFAIVNPQYRPLGTETASFFEGCLSVSGYQAVVT 148
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
R+ ++E+ + G+P++ +GWQARI+QHE DHL G LY+D+
Sbjct: 149 RHRNVELRYTNPAGEPVEEWFSGWQARIVQHETDHLRGILYLDR 192
>gi|156368959|ref|XP_001627958.1| predicted protein [Nematostella vectensis]
gi|156214922|gb|EDO35895.1| predicted protein [Nematostella vectensis]
Length = 192
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P+I Q GDPVL EPA VD + S + ++D +VKVMRS G G+AAPQIGV L++I
Sbjct: 9 PKIRQVGDPVLREPAEAVDVTFVHSPDFKAMVDRLVKVMRSHDGAGIAAPQIGVGLQVIA 68
Query: 136 LEDTKEYISYQ-----SKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYR 190
+E T +++ S +++K L + +NPKL+ + + F E CLSV G+
Sbjct: 69 MEYTGKHMKKLKDNGFSDKDLKRMGIAIVPLKVFINPKLRVINPKMLAFRESCLSVEGHS 128
Query: 191 AVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
AVV R ++EVT LD++ PI A GW ARILQHE DHL G LYVD M+ KTF
Sbjct: 129 AVVPRMSEVEVTALDQNATPITWRAAGWPARILQHEVDHLKGNLYVDSMLYKTF 182
>gi|320108553|ref|YP_004184143.1| peptide deformylase [Terriglobus saanensis SP1PR4]
gi|319927074|gb|ADV84149.1| peptide deformylase [Terriglobus saanensis SP1PR4]
Length = 187
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I AGDPVL + AR + EI S IQ ++ +M + M APGVGLAAPQIG L++
Sbjct: 2 LLNICTAGDPVLRKQARALSQEEILSPAIQELVKNMRETMWRAPGVGLAAPQIGESLQLA 61
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VLE ++ ++ E+K + P+D L I NPK++ + +EGCLS+ G+ A V
Sbjct: 62 VLEGRPQFHKKMNEAEVKEWQSTPYDYLAIFNPKIELLPAHVSA-YEGCLSIPGFMASVP 120
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
R + VT L+ +P ++A GW ARILQHE DHL+G LY+D+M TF +E+
Sbjct: 121 RSQSVRVTCLNEKAEPQVIEAEGWFARILQHEIDHLNGVLYIDRMESGTFTTIEH 175
>gi|119960758|ref|YP_947936.1| peptide deformylase [Arthrobacter aurescens TC1]
gi|119947617|gb|ABM06528.1| peptide deformylase [Arthrobacter aurescens TC1]
Length = 224
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 104/164 (63%), Gaps = 5/164 (3%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
LP IVQAG PVL + A D G+I + ++ M +VM APGVGLAAPQ+G+PL++
Sbjct: 34 LPSIVQAGHPVLRQLAAPYD-GQIDDAELAAFLERMKEVMHDAPGVGLAAPQLGIPLQLA 92
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VLED E E R P + I+NP+ + TA F+EGCLSV+GY+AVV
Sbjct: 93 VLEDKYEV----DPESAAVRHREPLEFFAIVNPQYRPLGTETASFYEGCLSVSGYQAVVT 148
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
R+ ++E+ + G+P++ +GWQARI+QHE DHL G LY+D+
Sbjct: 149 RHRNVELRYTNPAGEPVEEWFSGWQARIVQHETDHLRGILYLDR 192
>gi|291240947|ref|XP_002740376.1| PREDICTED: peptide deformylase-like [Saccoglossus kowalevskii]
Length = 270
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 111/197 (56%), Gaps = 4/197 (2%)
Query: 48 PHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNII 107
P R R+ SK L + K A + Q GDPVL A VDP +IGS I +I
Sbjct: 67 PRRVMRSVKYRSK----LWKPKMKNAPYNHVCQVGDPVLRGKAVPVDPSDIGSNSINQLI 122
Query: 108 DDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNP 167
+ MV VMR VGL+APQIGV ++IV+E K+++ S I+ + F L + +NP
Sbjct: 123 EQMVAVMRRGQTVGLSAPQIGVGCQVIVMEYKKKHMQMYSPAIIQQRGIKEFPLKIFINP 182
Query: 168 KLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHEC 227
++K D EGC S+ GY A VERY +E+TGL G+ A G+ ARI+QHE
Sbjct: 183 QMKVLDDTKVTQLEGCESIKGYSAYVERYHAVEITGLSPTGEMQSWKADGFPARIIQHEM 242
Query: 228 DHLDGTLYVDKMVPKTF 244
DHL G LY+D M PK+F
Sbjct: 243 DHLQGRLYIDIMDPKSF 259
>gi|308177432|ref|YP_003916838.1| peptide deformylase [Arthrobacter arilaitensis Re117]
gi|307744895|emb|CBT75867.1| peptide deformylase [Arthrobacter arilaitensis Re117]
Length = 213
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 112/181 (61%), Gaps = 9/181 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQ G PVL + A + ++ ++ ++ +++ M + M APGVGLAAPQ+G+PL+I VLE
Sbjct: 29 IVQLGHPVLRQQAVAYE-NQLPTDLLEELLEAMRQTMYDAPGVGLAAPQVGIPLQIAVLE 87
Query: 138 DTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D Y EE +R P + I NP+ S+R A+F+EGCLS +G++ VV R
Sbjct: 88 DL-----YPIPEEAATMREREPLEYFEIFNPEYVSASEREAVFYEGCLSFDGFQGVVTRP 142
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
DI T DRDGQ I +GWQARI+QHE DHL GT+Y+DK +T +++ +L E
Sbjct: 143 ADISATYKDRDGQEITRSFSGWQARIVQHEADHLSGTVYIDK--AETRSLIDETELWRHE 200
Query: 257 G 257
G
Sbjct: 201 G 201
>gi|195157966|ref|XP_002019865.1| GL12632 [Drosophila persimilis]
gi|194116456|gb|EDW38499.1| GL12632 [Drosophila persimilis]
Length = 196
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 111/189 (58%), Gaps = 2/189 (1%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV P IG+ I I+D MVKV+R VG+AAPQ+GVPLRIIV+E
Sbjct: 9 FTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGVPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+E Q K EI A + L + +NP+L+ S EGC+SV GY A VERY
Sbjct: 69 -FREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGYSAQVERY 127
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+ + G+ + G P +++ GW ARI QHE DHL+G +YVD+M TF + + AE
Sbjct: 128 ERVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMDVSTFNCLSWQQINAAE 187
Query: 257 GCPKLGVHE 265
G + H+
Sbjct: 188 GRSAIWFHK 196
>gi|24645728|ref|NP_731495.1| CG31373 [Drosophila melanogaster]
gi|23170932|gb|AAN13481.1| CG31373 [Drosophila melanogaster]
Length = 196
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 115/191 (60%), Gaps = 6/191 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV P +I S I IID MVKV+R VG+AAPQ+G+PLRIIV+E
Sbjct: 9 FTQIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL---MILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E Q K EI ++ R +L + +NP+L+ S + EGC+SV GY A VE
Sbjct: 69 -FREGKQEQFKPEI--YEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVE 125
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
RY + + G+ + G P +++ GW ARI QHE DHL+GT+Y+D+M TF + +
Sbjct: 126 RYDKVRIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMDLSTFNCILWEQINA 185
Query: 255 AEGCPKLGVHE 265
AEG + H+
Sbjct: 186 AEGRSAIWFHK 196
>gi|66771605|gb|AAY55114.1| IP07194p [Drosophila melanogaster]
Length = 206
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 115/191 (60%), Gaps = 6/191 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV P +I S I IID MVKV+R VG+AAPQ+G+PLRIIV+E
Sbjct: 19 FTQIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVME 78
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL---MILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E Q K EI ++ R +L + +NP+L+ S + EGC+SV GY A VE
Sbjct: 79 -FREGKQEQFKPEI--YEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVE 135
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
RY + + G+ + G P +++ GW ARI QHE DHL+GT+Y+D+M TF + +
Sbjct: 136 RYDKVRIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMDLSTFNCILWEQINA 195
Query: 255 AEGCPKLGVHE 265
AEG + H+
Sbjct: 196 AEGRSAIWFHK 206
>gi|390335566|ref|XP_790987.3| PREDICTED: peptide deformylase, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 243
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 105/167 (62%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL + V P +I ++ Q++I MV VMR GVGLAAPQIGV ++ V+E
Sbjct: 66 VTQVGDPVLRGKSDPVHPQDIRTKEFQDLIQKMVGVMRKTGGVGLAAPQIGVAQQVFVME 125
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
T++++ S+E KA + L + +NP LK SD + EGCLS+ G+ A R
Sbjct: 126 FTEKHMKGFSEEIQKAREMEVVPLKVFVNPSLKILSDNQVVLTEGCLSLTGFTAATPRAH 185
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++E+TGL+ G+P+ G+ ARILQHE DHL GTLY+D+M +TF
Sbjct: 186 EVEITGLNEKGEPVTWRVCGYPARILQHEYDHLQGTLYIDRMDTRTF 232
>gi|125778496|ref|XP_001360006.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
gi|54639756|gb|EAL29158.1| GA16218 [Drosophila pseudoobscura pseudoobscura]
Length = 196
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 111/189 (58%), Gaps = 2/189 (1%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV P IG+ I I+D MVKV+R VG+AAPQ+GVPLRIIV+E
Sbjct: 9 FTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGVPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+E Q K EI A + L + +NP+L+ S EGC+SV GY A VERY
Sbjct: 69 -FREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGYSAQVERY 127
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+ + G+ + G P +++ GW ARI QHE DHL+G +YVD+M TF + + AE
Sbjct: 128 DRVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMDVSTFNCLSWQQINAAE 187
Query: 257 GCPKLGVHE 265
G + H+
Sbjct: 188 GRSAIWFHK 196
>gi|168693535|ref|NP_001108286.1| peptide deformylase (mitochondrial) [Xenopus laevis]
gi|163916521|gb|AAI57494.1| LOC100137680 protein [Xenopus laevis]
Length = 240
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 125/232 (53%), Gaps = 24/232 (10%)
Query: 29 CPTRKLVSSPDFSN----DVTFSPHRKARTTSAISKAGWLLGLGQNKKAKL--------- 75
C L+ SP +SN +VT P R +S + W LG ++ L
Sbjct: 7 CRAVALLLSP-YSNTLLPNVTHVPRR-------LSSSSWTLGKKRSYWRYLRRRVLGAAT 58
Query: 76 ---PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
+ Q GDPVL A V + Q I++ +V+V+ + VG++APQ+GVPLR
Sbjct: 59 PPYSRVTQTGDPVLRCTAACVPSAHVSHPDTQAIVNQLVRVLSAGCCVGISAPQLGVPLR 118
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
I+ + ++ E +A + PF L + +NP+++ + +T F EGC SV G+ AV
Sbjct: 119 ILAVAFPEQMCQAVPPEVRQAREMSPFPLQIFINPEMRILNSQTLSFPEGCSSVQGFSAV 178
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
V RY +E++GL+ G+ I A GW ARI+QHE DHLDG LY+DKM P+TF
Sbjct: 179 VPRYYAVEISGLNPKGEHITWQAQGWAARIIQHEMDHLDGVLYIDKMDPRTF 230
>gi|195330059|ref|XP_002031726.1| GM26159 [Drosophila sechellia]
gi|194120669|gb|EDW42712.1| GM26159 [Drosophila sechellia]
Length = 196
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 113/191 (59%), Gaps = 6/191 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV P ++ S I IID MVKV+R VG+AAPQ+G+PLRIIV+E
Sbjct: 9 FTQIGDPVLRQRAEEVPPEDVDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL---MILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E Q K EI ++ R L + +NP L+ S + EGC+SV GY A VE
Sbjct: 69 -FREGKQEQFKPEI--YEERKMSTLPLAVFINPVLEIISSQVNKHPEGCMSVRGYSAQVE 125
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
RY + + G+ + G P +++ GW ARI QHE DHL+GT+Y+DKM TF + +
Sbjct: 126 RYDKVRIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMDFSTFNCILWEQINA 185
Query: 255 AEGCPKLGVHE 265
AEG + H+
Sbjct: 186 AEGRSAIWFHK 196
>gi|427784873|gb|JAA57888.1| Putative peptide deformylase [Rhipicephalus pulchellus]
Length = 217
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 105/169 (62%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A VDP ++ S IQ II+ M VM ++ G++APQ+G PLRII++E
Sbjct: 33 MCQVGDPVLRSRAEAVDPAKVTSAEIQKIINVMRIVMINSYSAGISAPQVGCPLRIIMME 92
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+Y+ EE K +PF L + +NP ++ + + +F EGC S+ G+ A V RY
Sbjct: 93 FPMKYMRLAQAEEAKTRAYQPFPLKVFVNPVMEVTNSQRLVFPEGCESIRGFTADVPRYY 152
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
+++V+GL+ G+ + A GW ARI+QHE DHL+G L++D M +TF
Sbjct: 153 EVKVSGLNEQGEAHEWQAYGWPARIIQHEMDHLEGNLFIDLMDSRTFHF 201
>gi|194902253|ref|XP_001980656.1| GG17275 [Drosophila erecta]
gi|190652359|gb|EDV49614.1| GG17275 [Drosophila erecta]
Length = 196
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 114/191 (59%), Gaps = 6/191 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV P +I S I IID MVKV+R VG+AAPQ+G+PLRIIV+E
Sbjct: 9 FTQIGDPVLRQRAEEVPPEDIDSMEINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL---MILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E Q K EI ++ R L + +NP+L+ S + EGC+SV GY A VE
Sbjct: 69 -FREGKQEQFKPEI--YEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVE 125
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
RY + + G+ + G P +++ GW ARI QHE DHL+G +YVDKM TF + + +
Sbjct: 126 RYDKVRIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGIIYVDKMDLPTFNCILWEQINV 185
Query: 255 AEGCPKLGVHE 265
AEG + H+
Sbjct: 186 AEGRSAIWYHK 196
>gi|260834959|ref|XP_002612477.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
gi|229297854|gb|EEN68486.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae]
Length = 188
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 105/167 (62%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V G+P+L A VD I S+ Q +++ +VKVMR VGL+APQ+GV L+II +E
Sbjct: 12 VVPVGNPILRGQALAVDHRNIKSKETQEVLEQLVKVMRKKGAVGLSAPQVGVGLQIIAVE 71
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
T++ + +E K + + F L + +NPKLK T +F EGC S+ G++A V RY
Sbjct: 72 CTRKQLDLVPQEIRKIREMQEFPLKIFINPKLKVTDYSTVVFPEGCESLPGFQANVPRYY 131
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ +TGLDR+G P+ TGW ARILQHE +HL G LY+D M +TF
Sbjct: 132 GVNITGLDREGMPVAWQVTGWPARILQHEVEHLRGDLYIDIMDSRTF 178
>gi|302803460|ref|XP_002983483.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii]
gi|300148726|gb|EFJ15384.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii]
Length = 157
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/118 (60%), Positives = 86/118 (72%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
G KA EIVQAGDPVLHE AREV E+ S+ +QN I ++ MR AP VGLAAPQ
Sbjct: 39 FGFKSKAPKLEIVQAGDPVLHEAAREVLHSEVSSDTVQNTIQGLIDAMREAPAVGLAAPQ 98
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
IGVPL+IIVLEDT EYISY S++E + R+PF+LL+I+NP L+ + TA FFEGCL
Sbjct: 99 IGVPLQIIVLEDTAEYISYVSRDEALSQQRKPFELLVIINPILRPTTSATARFFEGCL 156
>gi|241562206|ref|XP_002401329.1| polypeptide deformylase, putative [Ixodes scapularis]
gi|215499858|gb|EEC09352.1| polypeptide deformylase, putative [Ixodes scapularis]
Length = 217
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 107/169 (63%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A VDP +I S I+ +I M +VMR VG++APQIG PL+I ++E
Sbjct: 33 MCQVGDPVLRVRAEPVDPQKITSPEIRKVIHTMRQVMRGTYSVGISAPQIGCPLQITMME 92
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ I KE++ A + F L + +NP ++ +++ +F EGC S+ GY A V RY
Sbjct: 93 FSNSNIRMAKKEDMTARLYQAFPLKVFINPTMEVVNNQQLVFPEGCESIRGYSAEVPRYY 152
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
+++++GL+ G+ + A GW ARI+QHE DHL+G LY+D+M ++F+
Sbjct: 153 EVKISGLNEHGEHHEWQARGWPARIIQHEIDHLEGCLYIDRMNSRSFQF 201
>gi|386836550|ref|YP_006241608.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374096851|gb|AEY85735.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451789908|gb|AGF59957.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 215
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 102/167 (61%), Gaps = 5/167 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + + + + M +APGVGLAAPQ+GVPL I V+E
Sbjct: 27 IVAAGDPVLRRIAEPYD-GQLDDALLDRFVAALRETMHAAPGVGLAAPQVGVPLNIAVIE 85
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + KE ++A DR P +++NP + + + A FFEGCLSV G++AV RY
Sbjct: 86 DK----ARGRKEALQARDRAPLPFRVLVNPVYEPEGETRAAFFEGCLSVPGWQAVTARYA 141
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ + G D GQ + TGW ARI+QHE DHL+GTLY+D P++
Sbjct: 142 RVRLRGQDERGQAVDEVFTGWAARIVQHETDHLNGTLYLDVAEPRSL 188
>gi|318057272|ref|ZP_07975995.1| peptide deformylase [Streptomyces sp. SA3_actG]
gi|318076700|ref|ZP_07984032.1| peptide deformylase [Streptomyces sp. SA3_actF]
Length = 214
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 108/174 (62%), Gaps = 7/174 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL PA + G++ + ++ M + MR APGVGLAAPQIGVPLR+ VLE
Sbjct: 26 IVAAGDPVLRTPAAPYE-GQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84
Query: 138 DTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ +R P +++NP + +R A F+EGCLSV G++AVV R+
Sbjct: 85 DPA-----TVPEEVRRVRERAPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARH 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+ + D G+ + + GW ARI+QHE DHLDGTLYVD+ +P++ ENL
Sbjct: 140 AVVRLRAEDEHGRALDEEVRGWSARIVQHETDHLDGTLYVDRALPRSLTSNENL 193
>gi|311257108|ref|XP_003126954.1| PREDICTED: peptide deformylase, mitochondrial-like [Sus scrofa]
Length = 249
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 4/179 (2%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P + Q GDP L A V+P ++ +Q ++ +V+VMR VGL+APQ+GVPL+++
Sbjct: 71 PRVCQVGDPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLA 130
Query: 136 LE--DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
LE D + EI+ + PF L + +NP L+ R F EGC SV G+ A V
Sbjct: 131 LEFPDALFHACAPRLREIRQME--PFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACV 188
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
R+ ++++GLD G+P+ A+GW ARI+QHE DHL G L++DKM KTF + +++
Sbjct: 189 PRFQAVQISGLDPRGEPVVWQASGWAARIIQHEMDHLQGLLFIDKMDSKTFTNIHWMEV 247
>gi|433455780|ref|ZP_20413850.1| peptide deformylase [Arthrobacter crystallopoietes BAB-32]
gi|432197138|gb|ELK53540.1| peptide deformylase [Arthrobacter crystallopoietes BAB-32]
Length = 183
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
G PVL A D G+I + ++ M VM +APGVGLAAPQ+ +PLRI VLED E
Sbjct: 2 GHPVLRRAAVPYD-GQIDDAVLHALLVLMRHVMHAAPGVGLAAPQLAIPLRIAVLEDRYE 60
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+ + + +R P DLL ++NP + TA F+EGCLS GY+AVVER IE+
Sbjct: 61 V----AADVAQTRERLPLDLLAVINPNYRPIGGETAAFYEGCLSFTGYQAVVERPRQIEL 116
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ DG P+ +GWQARI QHE DHLDGT+Y+DK + ++
Sbjct: 117 SYHCADGTPVVRRLSGWQARIAQHETDHLDGTIYIDKALTRSL 159
>gi|195107440|ref|XP_001998320.1| GI23900 [Drosophila mojavensis]
gi|193914914|gb|EDW13781.1| GI23900 [Drosophila mojavensis]
Length = 234
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 113/200 (56%), Gaps = 5/200 (2%)
Query: 50 RKARTTSAISKA--GWLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQ 104
R+ T+ A S++ W L ++ LP Q GDPVL + A EV + S+ I+
Sbjct: 14 RQLSTSPAASQSFRKWYQQLWTTERTNLPPYSHFTQIGDPVLRDRAAEVPVECVDSKEIR 73
Query: 105 NIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMI 164
I+D MV V+R VG+AAPQIGV LRII +E + + +A L +
Sbjct: 74 AIVDRMVHVLRKYDCVGVAAPQIGVSLRIIAMEFRRGIKKELPEAMYRARQMSELPLTVF 133
Query: 165 LNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQ 224
+NP+L + EGC+SV G+ A VERY ++++GLDR+G+P+ ++ +GW ARI Q
Sbjct: 134 INPRLSVTNYTKHKHPEGCMSVRGFSAEVERYEAVKLSGLDREGEPLSLELSGWNARIAQ 193
Query: 225 HECDHLDGTLYVDKMVPKTF 244
HE DHLDG LY D M TF
Sbjct: 194 HEMDHLDGKLYTDHMDRSTF 213
>gi|220912690|ref|YP_002487999.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
gi|219859568|gb|ACL39910.1| formylmethionine deformylase [Arthrobacter chlorophenolicus A6]
Length = 226
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 101/169 (59%), Gaps = 7/169 (4%)
Query: 71 KKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVP 130
LP IVQAG P L + A D G+I E++ +I+ M +VM APGVGLAAPQ+G+P
Sbjct: 24 SAGTLPPIVQAGHPALRQKAAPFD-GQITPEQLARLIELMRQVMHEAPGVGLAAPQLGIP 82
Query: 131 LRIIVLEDTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
L++ VLED Y E A +R P D L ILNP A F+EGCLS+NG
Sbjct: 83 LQLAVLED-----KYDVDHEAAALRNRAPLDFLAILNPSYTPAGPDRAAFYEGCLSLNGL 137
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+AVV R + + + DG + +GWQARI+QHE DHL+G LYVD+
Sbjct: 138 QAVVSRPQAVLLDFVRPDGGAERRGFSGWQARIVQHETDHLNGILYVDR 186
>gi|442755785|gb|JAA70052.1| Putative peptide deformylase [Ixodes ricinus]
Length = 217
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 109/182 (59%)
Query: 65 LGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAA 124
LG N + Q GDPVL A VDP +I S I+ +I M +VM+ VG++A
Sbjct: 20 LGATTNPVPPYEFMCQVGDPVLRVRAEPVDPQKITSPEIRKVIHTMRQVMQGTYSVGISA 79
Query: 125 PQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
PQIG PL+I ++E + + KEE+ A + F L + +NP ++ +++ +F EGC
Sbjct: 80 PQIGCPLQITMMEFSNSNMRMAKKEEMTARLYQAFPLKVFINPTMEVVNNQQLVFPEGCE 139
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
S+ GY A V RY +++++GL+ G+ + GW ARI+QHE DHL+G LY+D+M ++F
Sbjct: 140 SIRGYSAEVPRYYEVKISGLNEHGEHHEWQVRGWPARIIQHEIDHLEGCLYIDRMNSRSF 199
Query: 245 RI 246
+
Sbjct: 200 QF 201
>gi|293355230|ref|XP_001073696.2| PREDICTED: peptide deformylase, mitochondrial-like [Rattus
norvegicus]
gi|392334370|ref|XP_003753154.1| PREDICTED: peptide deformylase, mitochondrial-like [Rattus
norvegicus]
Length = 231
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+P ++ +Q +++ +V+VMR VGL+APQ+GVPL+++VLE
Sbjct: 55 VCQVGDPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLE 114
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
S + PF L +++NP L+ R F EGC SV G+ A V R+
Sbjct: 115 FPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQ 174
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD G+P+ A+GW ARI+QHE DHL G L++DKM TF
Sbjct: 175 AVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKMDSGTF 221
>gi|302529604|ref|ZP_07281946.1| polypeptide deformylase [Streptomyces sp. AA4]
gi|302438499|gb|EFL10315.1| polypeptide deformylase [Streptomyces sp. AA4]
Length = 218
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAGDPVL AR + GE+ + + +I+ M + M +APGVGLAAPQIG+ +RI V+E
Sbjct: 26 IVQAGDPVLRAAARPYE-GELSDDTLSALIEGMKETMHAAPGVGLAAPQIGLSVRIAVVE 84
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D ++ + P +++NP + D TA FFEGCLSV G++AVV R L
Sbjct: 85 DGARERPGVAESTLATRGIVPLPFRVLVNPTYTRVGDETAAFFEGCLSVRGWQAVVARAL 144
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I + G D G + + +GW ARI+QHE DHL G LY+D+
Sbjct: 145 RIRLRGSDETGASLDEELSGWPARIVQHETDHLHGVLYLDR 185
>gi|195499832|ref|XP_002097114.1| GE24677 [Drosophila yakuba]
gi|194183215|gb|EDW96826.1| GE24677 [Drosophila yakuba]
Length = 196
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV P +I S I II+ MVKV+R VG+AAPQ+G+PLRIIV+E
Sbjct: 9 FTQIGDPVLRQRAEEVPPEDIDSMEINQIIEGMVKVLRHYDCVGVAAPQVGIPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL---MILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E Q K E+ ++ R L + +NP+L+ S + EGC+SV G+ A VE
Sbjct: 69 -FREGKQEQFKPEV--YEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGFSAEVE 125
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
RY + + G+ + G P +++ GW ARI QHE DHL+GT+Y+DKM TF+ +
Sbjct: 126 RYDKVRIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMDLSTFKCNLWEQINA 185
Query: 255 AEGCPKLGVH 264
AEG + H
Sbjct: 186 AEGRSAIWFH 195
>gi|426243631|ref|XP_004015654.1| PREDICTED: peptide deformylase, mitochondrial [Ovis aries]
Length = 250
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P + Q GDP L A V+P ++ +Q +++ +V+VMR VGL+APQ+GVPL+++
Sbjct: 72 PRVCQVGDPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRRCVGLSAPQLGVPLQVLA 131
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LE + + +A PF L + +NP L+ R F EGC SV G+ A V R
Sbjct: 132 LEFPEALFRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPR 191
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
+ ++++GLD G+ + A+GW ARI+QHE DHL G L++DKM KTF + +++
Sbjct: 192 FQAVQISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSKTFTNIHWMEV 248
>gi|344290933|ref|XP_003417191.1| PREDICTED: peptide deformylase, mitochondrial-like [Loxodonta
africana]
Length = 250
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 106/175 (60%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDP L A V+P ++ +Q +++ +V+VMR VGL+APQ+GVPL+++ LE
Sbjct: 74 VCQVGDPALRTAAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALE 133
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + + +A PF L + +NP L+ R F EGC SV+G+ A V R+
Sbjct: 134 FPEALLRAYAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVSGFLACVPRFQ 193
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
++++GLD G+ + A+GW ARI+QHE DHL G L++DKM +TF + +++
Sbjct: 194 GVQISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNIHWMEV 248
>gi|119910219|ref|XP_001255524.1| PREDICTED: peptide deformylase, mitochondrial [Bos taurus]
gi|297485396|ref|XP_002694953.1| PREDICTED: peptide deformylase, mitochondrial [Bos taurus]
gi|296478169|tpg|DAA20284.1| TPA: peptide deformylase-like [Bos taurus]
Length = 250
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P + Q GDP L A V+P ++ +Q +++ +V+VMR VGL+APQ+GVPL+++
Sbjct: 72 PRVCQVGDPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLA 131
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LE + + +A PF L + +NP L+ R F EGC SV G+ A V R
Sbjct: 132 LEFPETLFRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPR 191
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
+ ++++GLD G+ + A+GW ARI+QHE DHL G L++DKM KTF + +++
Sbjct: 192 FQAVQISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSKTFTNIHWMEV 248
>gi|163840759|ref|YP_001625164.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
gi|162954235|gb|ABY23750.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
Length = 213
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 115/193 (59%), Gaps = 9/193 (4%)
Query: 60 KAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
+A L L Q LPEIVQAG P L PA+ + G++G+ ++ ++ M + M +APG
Sbjct: 10 RAQILTMLEQAANGSLPEIVQAGHPTLRAPAQPWN-GQLGASELEQFVELMRRCMHAAPG 68
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTAL 178
GLAAPQ+GV L++ VLED +Q EI + +R +LNP+ + +
Sbjct: 69 FGLAAPQLGVSLQLAVLED-----GHQVDSEIASIRERSNLPFFAMLNPRYQPLNSILVG 123
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
F+EGCLS++G++AVV R+ I++T DG+ ++ + GW ARI+QHE DHL G LY+DK
Sbjct: 124 FYEGCLSMSGWQAVVYRHHAIQLTYTTVDGELVQRELAGWPARIVQHETDHLAGMLYLDK 183
Query: 239 MVPKTFRIVENLD 251
KT + N +
Sbjct: 184 --AKTRSLTNNAE 194
>gi|294632567|ref|ZP_06711127.1| peptide deformylase [Streptomyces sp. e14]
gi|292835900|gb|EFF94249.1| peptide deformylase [Streptomyces sp. e14]
Length = 215
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 102/168 (60%), Gaps = 7/168 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL PA D G++ E + + + MR+APGVGLAA Q+GV LRI V+E
Sbjct: 26 IVSAGDPVLRRPAEPYD-GQLAPELLARFVQALRVTMRTAPGVGLAAVQVGVGLRIAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ A +R P +++NP + R A FFEGCLSV G++AVV R+
Sbjct: 85 DPAPV-----PEEVRVARERVPQPFRVLVNPSYEPVGARRAAFFEGCLSVPGWQAVVARH 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++ + D G+ + TGW ARI+QHE DHLDG LYVD+ P++
Sbjct: 140 AEVRLRARDEHGRAVDEVFTGWPARIVQHETDHLDGVLYVDRAEPRSL 187
>gi|255003823|ref|NP_080789.2| peptide deformylase-like protein [Mus musculus]
Length = 231
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+P ++ +Q ++ MV+VMR VGL+APQ+GVPL+++ LE
Sbjct: 55 VCQVGDPVLRVVAAPVEPEQLAGPELQRLVGRMVQVMRRRGCVGLSAPQLGVPLQVLALE 114
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + S + PF L +++NP L+ R F EGC SV G+ A V R+
Sbjct: 115 FPDKLLRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQ 174
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD G+P+ A+GW ARI+QHE DHL G L++DKM TF
Sbjct: 175 AVQISGLDPKGEPVVWSASGWTARIIQHEMDHLQGCLFIDKMDSGTF 221
>gi|333023046|ref|ZP_08451110.1| putative peptide deformylase [Streptomyces sp. Tu6071]
gi|332742898|gb|EGJ73339.1| putative peptide deformylase [Streptomyces sp. Tu6071]
Length = 214
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL PA + G++ + ++ M + MR APGVGLAAPQIGVPLR+ VLE
Sbjct: 26 IVAAGDPVLRTPAAPYE-GQLPEALLSRLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + ++ + P+ +L+ NP + +R A F+EGCLSV G++AVV R+
Sbjct: 85 DPA--TVPEEVRRVREREPLPYRVLV--NPVCEGVGERRAAFYEGCLSVPGWQAVVARHA 140
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+ + D G+ + + GW ARI+QHE DHLDGTLYVD+ +P++ ENL
Sbjct: 141 VVRLRAEDEHGRGLDEEVRGWPARIVQHETDHLDGTLYVDRALPRSLTSNENL 193
>gi|410983898|ref|XP_003998272.1| PREDICTED: peptide deformylase, mitochondrial [Felis catus]
Length = 263
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 104/177 (58%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P + Q GDP L A V+P ++ +Q ++ +V+VMR VGL+APQ+GVPL+++
Sbjct: 85 PRVCQVGDPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRRCVGLSAPQLGVPLQVLA 144
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LE + + +A PF L + +NP L+ R F EGC SV G+ A V R
Sbjct: 145 LEFPESLFRACAPRLREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVVGFLACVPR 204
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
+ ++++GLD G+ + A+GW ARI+QHE DHL G L++DKM KTF + +++
Sbjct: 205 FQAVQISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSKTFTNIHWMEV 261
>gi|348572806|ref|XP_003472183.1| PREDICTED: LOW QUALITY PROTEIN: peptide deformylase,
mitochondrial-like [Cavia porcellus]
Length = 237
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 106/175 (60%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+P ++ +Q ++ +V+VMR VGL+APQ+GVPL+++ LE
Sbjct: 61 VCQVGDPVLRAVAAPVEPAQLEGPELQRLVQQLVQVMRRRRCVGLSAPQLGVPLQVLALE 120
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+E + + PF L +++NP L+ R F EGC SV G+ A V R+
Sbjct: 121 LPEELFRACAPRLRELRQMSPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLAYVPRFQ 180
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
++++GLD G+ + A+GW ARI+QHE DHL G L++DKM +TF V+ +++
Sbjct: 181 AVQISGLDPRGEQVVWQASGWTARIIQHEMDHLQGCLFIDKMDTRTFTNVQWMEV 235
>gi|73957448|ref|XP_853641.1| PREDICTED: peptide deformylase, mitochondrial [Canis lupus
familiaris]
Length = 242
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 104/177 (58%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P + Q GDP L A V+P ++ ++Q ++ +V+VMR VGL+APQ+GVPL+++
Sbjct: 64 PHVCQVGDPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLA 123
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
E + + + PF L +++NP L+ R F EGC SV G+ A V R
Sbjct: 124 FEFPEALFRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPR 183
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
+ ++++GLD G+ + A+GW ARI+QHE DHL G L++DKM KTF + +++
Sbjct: 184 FQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSKTFTNIHWMEV 240
>gi|345855233|ref|ZP_08807983.1| peptide deformylase [Streptomyces zinciresistens K42]
gi|345633301|gb|EGX55058.1| peptide deformylase [Streptomyces zinciresistens K42]
Length = 207
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 102/169 (60%), Gaps = 7/169 (4%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV AGDPVL PA + G++ + +D + M +APGVG+AAPQ+GV LRI V+
Sbjct: 16 EIVAAGDPVLRRPAERFE-GQLEPALLHRFVDALRLTMHAAPGVGVAAPQVGVALRIAVI 74
Query: 137 EDTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
ED EE++ R P +++NP + A FFEGCLSV GY+AVV R
Sbjct: 75 EDPAPV-----PEEVRLVRGRVPQPFRVLVNPSYEAVGAARAAFFEGCLSVPGYQAVVAR 129
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++ +TG D G+P+ +GW ARI+QHE DHLDG LY+D+ P++
Sbjct: 130 AAEVRLTGEDERGRPVDEVFSGWPARIVQHETDHLDGVLYLDRAEPRSL 178
>gi|386843997|ref|YP_006249055.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374104298|gb|AEY93182.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451797290|gb|AGF67339.1| peptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 214
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG PVL D G++G + ++ + M +APGVGLAAPQ+GVPLRI V+E
Sbjct: 26 IVAAGQPVLRRGTEPYD-GQLGPALLARFVEALRVTMHAAPGVGLAAPQVGVPLRIAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D Q EE+ A R P +++NP + A FFEGCLSV G+ AVV R+
Sbjct: 85 DPA-----QVPEEVAVARGRVPQPFRVLVNPSYEPVGTARAAFFEGCLSVPGWVAVVARH 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVE 248
++ + G D G+ + TGW ARI+QHE DHLDGTLY+D+ P++ E
Sbjct: 140 AEVRLRGADEHGRALDEVFTGWPARIVQHETDHLDGTLYLDRAEPRSLSTTE 191
>gi|374991833|ref|YP_004967328.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
gi|297162485|gb|ADI12197.1| peptide deformylase [Streptomyces bingchenggensis BCW-1]
Length = 217
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 7/163 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG PVL PA + G++ + ++ ++ M + M++APGVGLAAPQIG+PLRI V+E
Sbjct: 22 IVAAGVPVLRRPALPYE-GQLSAGQLDRLVRAMRETMQAAPGVGLAAPQIGIPLRIAVIE 80
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSD--RTALFFEGCLSVNGYRAVVER 195
D E S E +A R P +++NP + D R A FFEGCLSV G++AVV R
Sbjct: 81 DPAEV----SAEVREARGRVPLPFRVLVNPSYEPVGDPGRRAAFFEGCLSVPGWQAVVAR 136
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I + G D G+ + + GW ARI+QHE DHLDGTLY+D+
Sbjct: 137 PERIRLRGQDERGRELDEEFAGWPARIVQHETDHLDGTLYLDR 179
>gi|302555792|ref|ZP_07308134.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
gi|302473410|gb|EFL36503.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
Length = 214
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 98/162 (60%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL D G++ E + ++ + MR+APGVGLAAPQ+GVPLRI V+E
Sbjct: 26 IVAAGDPVLRRGTEPYD-GQLAPELLARFVEALRVTMRAAPGVGLAAPQVGVPLRIAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ A R P +++NP A FFEGCLSV G++AVV R
Sbjct: 85 DPAPV-----PEEVRLARGRVPLPFRVLVNPAYAPVGGARAAFFEGCLSVPGWQAVVARP 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
++ +TG D G+ + TGW ARI+QHE DHLDG LY+D+
Sbjct: 140 AEVRLTGQDEHGRALDEVFTGWPARIVQHETDHLDGVLYLDR 181
>gi|302563993|ref|NP_001181771.1| peptide deformylase, mitochondrial precursor [Macaca mulatta]
Length = 243
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 103/178 (57%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
P + Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVPL+++
Sbjct: 64 FPHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPLQVL 123
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
LE + + PF L + +NP L+ R F EGC SV G+ A V
Sbjct: 124 ALELPEALCREFPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVP 183
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
R+ ++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF V +++
Sbjct: 184 RFQAVQISGLDPNGEQVAWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMEV 241
>gi|195389909|ref|XP_002053614.1| GJ23992 [Drosophila virilis]
gi|194151700|gb|EDW67134.1| GJ23992 [Drosophila virilis]
Length = 203
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 100/167 (59%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL A EV P + S I +I+D MVKV+R VG+AAPQ+GVPLRIIV+E
Sbjct: 16 FTQIGDPVLRVRAEEVPPERLDSHEINDIVDQMVKVLRHYDCVGVAAPQLGVPLRIIVME 75
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + + E+ + P L + +NPK++ +D EGC+SV G+ V RY
Sbjct: 76 FREGKRAQFTAEDYEQRKMSPLPLSVFINPKIEIITDAQHTHPEGCMSVRGFSGQVARYD 135
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ VTG+ G P +++ GW ARI QHE DHL+G +YVD+M +F
Sbjct: 136 RVRVTGIGMLGTPSELELVGWSARIAQHEMDHLNGIIYVDRMDVSSF 182
>gi|408527389|emb|CCK25563.1| Peptide deformylase 3 [Streptomyces davawensis JCM 4913]
Length = 215
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL D G++G + I+ + M +APGVGLAAPQ+GVPLRI V+E
Sbjct: 26 IVAAGDPVLRRGTERYD-GQLGPALLARFIEALRLTMHTAPGVGLAAPQVGVPLRIAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ A R P +++NP + A FFEGCLSV G++AVV R
Sbjct: 85 DPAPV-----TEEVRLARGRVPQPFRVLVNPSYEPLGTARAAFFEGCLSVPGWQAVVARP 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+++ +TG D +G+ + + +GW ARI+QHE DHLDG LY+D+
Sbjct: 140 VEVRLTGEDENGRTVDEEFSGWPARIVQHETDHLDGMLYLDR 181
>gi|295395559|ref|ZP_06805753.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
gi|294971578|gb|EFG47459.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
Length = 237
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 65 LGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAA 124
L N +P IV AGDPVL D G+I + ++ M M +APGVGLAA
Sbjct: 32 LTAATNNDGVIP-IVTAGDPVLRTTTARFD-GQIDDSTLLELLTAMRTTMLAAPGVGLAA 89
Query: 125 PQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
PQ+G+ LR+ V ED S E A +R P ++NP + +D+ F+EGCL
Sbjct: 90 PQVGISLRLAVCEDP----GTTSAEHAAARERTPLPFTALINPTYQPATDQLVAFYEGCL 145
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
S+ GY+AVV R + +T D G I D TGW RI+ HE DHLDG LY+DK
Sbjct: 146 SIPGYQAVVARPRTVTLTAHDHQGATITKDITGWAGRIIAHETDHLDGILYLDK 199
>gi|195389911|ref|XP_002053615.1| GJ23993 [Drosophila virilis]
gi|194151701|gb|EDW67135.1| GJ23993 [Drosophila virilis]
Length = 234
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 103/185 (55%), Gaps = 3/185 (1%)
Query: 63 WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
W L K+ +P Q GDPVL + A V + S+ +Q I+D MV V+R
Sbjct: 29 WYQQLWTMKRTNMPPYGHFTQIGDPVLRDRAAVVPAECVDSKEVQAIVDQMVHVLRKFDC 88
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF 179
VG+AAPQIG+ LRII +E + S+ KA L +++NPKL +
Sbjct: 89 VGIAAPQIGISLRIIAMEFRRSIKQDLSEATYKARQMSELPLTVLINPKLTVTNYTKHKH 148
Query: 180 FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
EGC+SV GY A VERY ++++G++R G +++ +GW ARI QHE DHLDG LY D M
Sbjct: 149 PEGCMSVRGYSAEVERYEGVKLSGVNRQGAHSELELSGWNARIAQHEMDHLDGKLYTDHM 208
Query: 240 VPKTF 244
TF
Sbjct: 209 DRSTF 213
>gi|431912415|gb|ELK14549.1| Peptide deformylase, mitochondrial [Pteropus alecto]
Length = 244
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 102/175 (58%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDP L A V+P ++ +Q ++ +V+VMR VGL+APQ+GVPL+++ LE
Sbjct: 68 VCQVGDPALRAVAAPVEPAQLAGPELQQLVQRLVQVMRRRRCVGLSAPQLGVPLQVLALE 127
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 128 FPEALFRACAPRFREVRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQ 187
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
++++GLD G+ + A+GW ARI+QHE DHL G L++DKM KTF + +++
Sbjct: 188 AVQISGLDPGGKQVMWQASGWAARIIQHEMDHLQGCLFIDKMDSKTFTNIHWMEV 242
>gi|195055504|ref|XP_001994657.1| GH17361 [Drosophila grimshawi]
gi|193892420|gb|EDV91286.1| GH17361 [Drosophila grimshawi]
Length = 234
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 108/202 (53%), Gaps = 6/202 (2%)
Query: 49 HRKARTTSAISKAG---WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSER 102
H + +TS ++ W L K+ LP Q GDPVL + A EV + S+
Sbjct: 12 HERWLSTSLAARQSFRKWYQQLWTTKRTNLPPYEHFTQIGDPVLRDRAAEVPADCVNSKE 71
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLL 162
I I+D MV V+R VG+AAPQIGV LRII +E + S K L
Sbjct: 72 IHAIVDQMVHVLRKFDCVGIAAPQIGVSLRIIAMEFRRSIKKDLSDATYKRRQMSELPLT 131
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
+++NP+L + EGC+SV G+ A VERY ++++GLDR G +++ +GW ARI
Sbjct: 132 VLINPQLTVTNYTKHKHPEGCMSVRGFSAEVERYEGVKLSGLDRQGVHSELELSGWNARI 191
Query: 223 LQHECDHLDGTLYVDKMVPKTF 244
QHE +HLDG LY D M TF
Sbjct: 192 AQHEMEHLDGKLYTDHMDRSTF 213
>gi|195444657|ref|XP_002069968.1| GK11287 [Drosophila willistoni]
gi|194166053|gb|EDW80954.1| GK11287 [Drosophila willistoni]
Length = 241
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 104/196 (53%), Gaps = 3/196 (1%)
Query: 52 ARTTSAISKAGWLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIID 108
+ T + S W L ++ LP Q GDPVL + A V P + S I+ I++
Sbjct: 25 STTPACQSFKKWYQQLWTTERTNLPPYGHFTQVGDPVLRQQAALVPPEHLDSPEIKAIVE 84
Query: 109 DMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPK 168
M+KV+R VG+AAPQIGV LRII +E KE + +A L +++NP+
Sbjct: 85 QMIKVLRKYNCVGIAAPQIGVSLRIIAMEFKKEIRKELPEFTYQARLMSELPLTVLINPE 144
Query: 169 LKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECD 228
L S EGC+SV GY VERY + + G DR G ++ TGW ARI QHE D
Sbjct: 145 LTVTSYVKLKHPEGCMSVRGYSGEVERYEAVNLNGHDRLGVKTQISLTGWNARIAQHEMD 204
Query: 229 HLDGTLYVDKMVPKTF 244
HLDG LY D+M TF
Sbjct: 205 HLDGKLYTDRMDRSTF 220
>gi|383410437|gb|AFH28432.1| peptide deformylase, mitochondrial precursor [Macaca mulatta]
Length = 243
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
P + Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVPL+++
Sbjct: 64 FPHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPLQVL 123
Query: 135 VLEDTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
L+ E + + +A + PF L + +NP L+ R F EGC SV G+ A V
Sbjct: 124 ALK-LPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACV 182
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
R+ ++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF V +++
Sbjct: 183 PRFQAVQISGLDPNGEQVAWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMEV 241
>gi|284031698|ref|YP_003381629.1| peptide deformylase [Kribbella flavida DSM 17836]
gi|283810991|gb|ADB32830.1| Peptide deformylase [Kribbella flavida DSM 17836]
Length = 240
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 5/188 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQ GDPVL A D G+ +++ ++ + + M +APGVGLAAPQ+GVPLRI VLE
Sbjct: 52 IVQLGDPVLRRKAEPFD-GQFDDGLLKDFVELLRRTMLAAPGVGLAAPQVGVPLRIAVLE 110
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D S E +A +R P + L +LNP+ + F+EGCLS+ G+ VV R L
Sbjct: 111 DPATV----SAEVAEARERYPLEFLAVLNPEYAPRGRDKRGFYEGCLSMPGFTGVVSRPL 166
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEG 257
++ D G ++ +GWQARI QHE DHL+G LYVD++ P++ + A+
Sbjct: 167 KVDAGYSDLTGARRRLTLSGWQARIFQHETDHLNGRLYVDQVEPRSMATSTSYTNRWADP 226
Query: 258 CPKLGVHE 265
P E
Sbjct: 227 VPTRAAEE 234
>gi|332227624|ref|XP_003262991.1| PREDICTED: peptide deformylase, mitochondrial [Nomascus leucogenys]
Length = 240
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
P + Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVP +++
Sbjct: 64 FPHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVL 123
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VLE T+ + PF L + +NP L+ R F EGC SV G+ A V
Sbjct: 124 VLELTEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVP 183
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
R ++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF
Sbjct: 184 RLQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 233
>gi|347970782|ref|XP_310421.4| AGAP003861-PA [Anopheles gambiae str. PEST]
gi|333466829|gb|EAA06035.4| AGAP003861-PA [Anopheles gambiae str. PEST]
Length = 232
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 107/200 (53%), Gaps = 5/200 (2%)
Query: 50 RKARTTSAISK--AGWLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQ 104
R TTS + K A W L Q K P IVQ GDPVL PA + E+ S +Q
Sbjct: 11 RTLSTTSRMDKSFAKWYRSLWQPKSNDEPPYDHIVQLGDPVLRVPANAIPEKELQSAEVQ 70
Query: 105 NIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMI 164
+ + KVMR+ VGLAAPQ+G+ LR V+E E +K + K + P L ++
Sbjct: 71 YLARHLTKVMRAYRCVGLAAPQLGLSLRAFVMEFKDELRDQYTKADYKLREMEPLPLTIL 130
Query: 165 LNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQ 224
LNP+LK + + E C SV GYRA V RY +I + G D G ++ +GW ARI Q
Sbjct: 131 LNPELKVLNYEKVIHTEACESVRGYRADVPRYREILLQGFDATGNRQELRLSGWNARIAQ 190
Query: 225 HECDHLDGTLYVDKMVPKTF 244
HE DHL+G +Y D M K+
Sbjct: 191 HEMDHLNGIVYTDIMNRKSL 210
>gi|116670740|ref|YP_831673.1| peptide deformylase [Arthrobacter sp. FB24]
gi|116610849|gb|ABK03573.1| Peptide deformylase [Arthrobacter sp. FB24]
Length = 226
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 105/199 (52%), Gaps = 18/199 (9%)
Query: 41 SNDVTFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGS 100
+N FS R T I AG LP IVQAG PVL + A + G++
Sbjct: 5 ANPTPFSAARIRETVQEILSAG-----------VLPAIVQAGHPVLRQQAAPYE-GQLDG 52
Query: 101 ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF-DRRPF 159
+ +I M +VM APGVGLAAPQ+G+PL++ VLED Y E A R P
Sbjct: 53 TELAALIALMREVMHDAPGVGLAAPQLGIPLQLAVLED-----QYDVDAETAAVRHRSPL 107
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
+ ++NP TA F+EGCLS+ G +AVV R+ + + D G + D GWQ
Sbjct: 108 EFFAVINPSYSPLGTGTAAFYEGCLSLQGLQAVVSRHETVRLDFTDPGGTRRQQDFFGWQ 167
Query: 220 ARILQHECDHLDGTLYVDK 238
ARI+QHE DHL G LYVDK
Sbjct: 168 ARIVQHEADHLQGILYVDK 186
>gi|194741018|ref|XP_001952986.1| GF17443 [Drosophila ananassae]
gi|190626045|gb|EDV41569.1| GF17443 [Drosophila ananassae]
Length = 196
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 111/191 (58%), Gaps = 6/191 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + A EV I S I I+D MVKV+R VG+AAPQIG+PLRIIV+E
Sbjct: 9 FTQIGDPVLRQRAEEVPEERIDSPEIDQIVDRMVKVLRHYDCVGVAAPQIGIPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL---MILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E Q K EI ++ R L + +NP+L+ S + EGC+SV GY A V
Sbjct: 69 -FREGKREQYKPEI--YEERKMSTLPLAVFVNPELEIVSGQINKHPEGCMSVRGYSAEVG 125
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
R+ + V G+ + G P +++ GW ARI QHE DHL+G +YVD+M TF+ V +
Sbjct: 126 RFDKVRVRGVGKLGTPSEMELEGWNARIAQHETDHLNGCIYVDRMDVSTFQCVNWELINA 185
Query: 255 AEGCPKLGVHE 265
AEG L H+
Sbjct: 186 AEGRSALWFHK 196
>gi|325963300|ref|YP_004241206.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
gi|323469387|gb|ADX73072.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
Length = 226
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 101/169 (59%), Gaps = 7/169 (4%)
Query: 71 KKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVP 130
LP IVQAG P L + A D G++ + ++ +I M +VM APGVGLAAPQ+G+P
Sbjct: 24 SAGTLPPIVQAGHPALRQRAAAYD-GQLSAVQLDGLISLMREVMHEAPGVGLAAPQLGIP 82
Query: 131 LRIIVLEDTKEYISYQSKEEIKAFDRR-PFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
L+I V+ED Y E A +R P + L I+NP+ A F+EGCLS+NG
Sbjct: 83 LQIAVVED-----QYDVDPEAAALRKRSPLEFLAIVNPRYTPLGTDMASFYEGCLSLNGL 137
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+AVV R + + DG ++ + GWQARI+QHE DHL+G LYVD+
Sbjct: 138 QAVVARPEKVLLEFQAPDGSGVQREFEGWQARIVQHETDHLNGVLYVDR 186
>gi|345011217|ref|YP_004813571.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
gi|344037566|gb|AEM83291.1| Peptide deformylase [Streptomyces violaceusniger Tu 4113]
Length = 227
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 111/187 (59%), Gaps = 5/187 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG PVL +PA + G++ ++++ ++ M + M SAPGVGLAAPQIGVPLR+ V+E
Sbjct: 22 IVSAGVPVLRQPALPYE-GQLAADQLDRLLAAMRETMHSAPGVGLAAPQIGVPLRLAVIE 80
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D E + +E++ +P+ +L+ NP + A FFEGCLS+ G++AVV R
Sbjct: 81 DPAEVAA--EVQEVRGRVPQPYRVLV--NPGYEPVGHGRAAFFEGCLSIPGWQAVVSRPD 136
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEG 257
I + G D G+ + + TGW ARI+QHE DHLDG LY+D ++ + + ++
Sbjct: 137 RIRLRGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLDLAETRSLSTAQAVSDYWSQP 196
Query: 258 CPKLGVH 264
P H
Sbjct: 197 TPATAAH 203
>gi|329938533|ref|ZP_08287958.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
gi|329302506|gb|EGG46397.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
Length = 218
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 107/183 (58%), Gaps = 7/183 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A + G++ + + + + M +APGVGLAAPQ+GVPLRI V+E
Sbjct: 29 IVAAGDPVLRRGAEPFE-GQLDAPLLDRFLAALRATMHAAPGVGLAAPQVGVPLRIAVIE 87
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ A R P +++NP + + A FFEGCLSV G++AVV R+
Sbjct: 88 DPAPV-----PEEVRSARGRVPQPYRVLVNPSYEAVGEERAAFFEGCLSVPGWQAVVARH 142
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+ + GLD G + + GW ARI+QHE DHLDGTLY+D+ P++ E + A+
Sbjct: 143 ARVRLRGLDARGAVLDEEFAGWPARIVQHETDHLDGTLYLDRAEPRSLSTNEAVARWWAQ 202
Query: 257 GCP 259
P
Sbjct: 203 PTP 205
>gi|157127011|ref|XP_001654759.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes
aegypti]
gi|108884464|gb|EAT48689.1| AAEL000279-PA, partial [Aedes aegypti]
Length = 243
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 50 RKARTTSAISKAG-WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQN 105
R T+S ++ G W GL Q K + P + Q GDPVL + A V + S ++
Sbjct: 23 RSISTSSQLASFGRWYRGLWQQKSSNEPPYGHVTQIGDPVLRQTAAMVPVEAVTSPEVKY 82
Query: 106 IIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMIL 165
++ MV VMR VGLAAPQIG+ L+I+V+E + + E K + L +++
Sbjct: 83 LVKHMVHVMRKYDCVGLAAPQIGISLKILVMEFEDRLKKHYTNAEYKIKEMETLPLTVMI 142
Query: 166 NPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQH 225
NP++K + F E C SV GY V RY + ++GLD +GQ +++ GW ARI QH
Sbjct: 143 NPEMKITNYEKISFPESCASVKGYSGEVARYAGVLLSGLDENGQSKEMELKGWNARIAQH 202
Query: 226 ECDHLDGTLYVDKMVPKTF 244
E DHL+G +Y D M +F
Sbjct: 203 EMDHLNGVVYTDVMKRDSF 221
>gi|326438101|gb|EGD83671.1| hypothetical protein PTSG_12149 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
LP+I++AG PVL E A + +I I+N++D + +R G GL APQIG L++
Sbjct: 13 LPKIIEAGHPVLREKAAPIQRSDITDGSIRNLVDSLSARLREDKGFGLCAPQIGESLQLF 72
Query: 135 VLEDTKEYISYQSK-EEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
V+E T + I ++ +IK D RP L I NP+L K + + E CLS+ GY A V
Sbjct: 73 VMEVTPDMIELETNFRDIKMLDMRPVPLTAIANPRL-KYGKKMSTHRESCLSIPGYSAHV 131
Query: 194 ERYLDIEVTGL-DRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
R +DI +TGL G + V +GW ARI+QHE DHL+G LY DKM T I EN
Sbjct: 132 TRPVDIHLTGLCAVTGTDVSVALSGWTARIVQHEVDHLNGCLYTDKMDASTLSINEN 188
>gi|444709352|gb|ELW50373.1| Conserved oligomeric Golgi complex subunit 8 [Tupaia chinensis]
Length = 823
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 99/167 (59%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+P +I +Q ++ +V+VMR VGL+APQ+GVPL+++ LE
Sbjct: 647 VCQVGDPVLRTVAAPVEPAQISGPELQRLVQRLVQVMRRRRCVGLSAPQLGVPLQVLALE 706
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ S + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 707 LPEALCRACSPRLRQLRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLAYVPRFQ 766
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD G+ + A+GW +RI+QHE DHL G L++DKM +TF
Sbjct: 767 AVQISGLDPRGEQVVWQASGWASRIIQHEMDHLQGCLFIDKMDSRTF 813
>gi|317482560|ref|ZP_07941575.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
gi|316915982|gb|EFV37389.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA]
Length = 217
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K KL IVQAG+PVL + + G++ + +ID M M APGVGLAAPQIG+ L
Sbjct: 25 KEKLLPIVQAGEPVLRQRTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAAPQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NP K SD+TA F+EGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTNENLE 197
>gi|414887887|tpg|DAA63901.1| TPA: hypothetical protein ZEAMMB73_573089 [Zea mays]
Length = 162
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 77/88 (87%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P V+AGDPVLHEPA+EV PG++ SE++Q +ID MV VMR APGVGLAAPQIGVPLRIIV
Sbjct: 68 PGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPLRIIV 127
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLM 163
LEDT+EYISY K++I+A DRRPFDLL+
Sbjct: 128 LEDTQEYISYAPKKDIEAQDRRPFDLLV 155
>gi|170050375|ref|XP_001861255.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
gi|167872016|gb|EDS35399.1| peptide deformylase, mitochondrial [Culex quinquefasciatus]
Length = 236
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 114/207 (55%), Gaps = 16/207 (7%)
Query: 52 ARTTSAISKAGWLLGLGQNKKAK----LPEIVQAGDPVLHEPAREVDPGEIGSERIQNII 107
+ TT S A W L ++K + Q GDPVL + A+ V P + S ++ ++
Sbjct: 10 STTTQLGSLARWYQKLWRSKGPTNGPPYAHVTQVGDPVLRQKAQLVPPEAVTSPEVRFLV 69
Query: 108 DDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK----EYISYQSKEEIKAFDR------R 157
M+ VMR VGLAAPQIG+ LRI+V+E EY S + K IK D R
Sbjct: 70 QAMIDVMRKYSCVGLAAPQIGISLRILVMEFKDKLRDEYTSAEYK--IKEMDTLPLTVGR 127
Query: 158 PFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATG 217
P +++++NP+LK + F E C SV G+ A V RY ++ ++GLD +G+ ++ G
Sbjct: 128 PTFMVVLINPELKVTNYEKKSFTEACASVKGFSAEVPRYSEVLLSGLDENGKSKELTLKG 187
Query: 218 WQARILQHECDHLDGTLYVDKMVPKTF 244
W ARI QHE DHLDG +Y D M KTF
Sbjct: 188 WNARIAQHEMDHLDGVIYTDVMDRKTF 214
>gi|291435575|ref|ZP_06574965.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
gi|291338470|gb|EFE65426.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
Length = 214
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 104/183 (56%), Gaps = 9/183 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + ++ + M +APGVGLAAPQ+GV LRI V+E
Sbjct: 26 IVAAGDPVLRRGAEPFD-GQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVIE 84
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D +E +A R P ++NP + A FFEGCLSV GY+AVV R
Sbjct: 85 DPAPV----PEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPA 140
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR----IVENLDLP 253
++ +TG D G+ + TGW ARI+QHE DHLDG LY+D+ P++ +VE P
Sbjct: 141 EVRLTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEPRSLSSHQAVVERWSQP 200
Query: 254 LAE 256
AE
Sbjct: 201 TAE 203
>gi|269796214|ref|YP_003315669.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
10542]
gi|269098399|gb|ACZ22835.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM
10542]
Length = 211
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG PVL +PA D G++G + + ++D M M APGVGLAAPQIG+ L+I VL
Sbjct: 25 IVQAGHPVLRQPAAAYD-GQLG-DLLPALLDSMRLTMVDAPGVGLAAPQIGIGLQIAVLH 82
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D +E R P + +++NP + D F+EGCLSV GY+AVV R+
Sbjct: 83 DAGSTDPEDPRE------RTPLEHRVLVNPSYEGVGDEVRSFYEGCLSVEGYQAVVARHR 136
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+ +TG D G+ + TGW ARI+QHE DHL G LY+D ++ +NL
Sbjct: 137 TVRLTGQDETGRALDEQLTGWPARIVQHETDHLRGQLYIDHAETRSLATNDNL 189
>gi|183602110|ref|ZP_02963478.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
gi|219683022|ref|YP_002469405.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
gi|241191342|ref|YP_002968736.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196748|ref|YP_002970303.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|384189976|ref|YP_005575724.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192766|ref|YP_005578513.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|384194340|ref|YP_005580086.1| peptide deformylase [Bifidobacterium animalis subsp. lactis BLC1]
gi|384195904|ref|YP_005581649.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9]
gi|387821212|ref|YP_006301255.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis B420]
gi|387822896|ref|YP_006302845.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis Bi-07]
gi|423679874|ref|ZP_17654750.1| peptide deformylase [Bifidobacterium animalis subsp. lactis BS 01]
gi|183218603|gb|EDT89246.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019]
gi|219620672|gb|ACL28829.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011]
gi|240249734|gb|ACS46674.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240251302|gb|ACS48241.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|289177468|gb|ADC84714.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12]
gi|295794335|gb|ADG33870.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9]
gi|340365503|gb|AEK30794.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|345283199|gb|AEN77053.1| peptide deformylase [Bifidobacterium animalis subsp. lactis BLC1]
gi|366040873|gb|EHN17386.1| peptide deformylase [Bifidobacterium animalis subsp. lactis BS 01]
gi|386653913|gb|AFJ17043.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis B420]
gi|386655504|gb|AFJ18633.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis Bi-07]
Length = 217
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L K+ LP IV+AG+PVL E D G++ + +I+ M K M APGVGLA PQ
Sbjct: 20 LKSAKEGVLP-IVEAGEPVLREQCVRYD-GQLSKHTLHKLIETMHKTMLDAPGVGLAGPQ 77
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
IG+ L I V+ED EI F PF I+NP + + T F+EGCLS
Sbjct: 78 IGLNLAIAVVEDHANGDDDGDPREIAEF---PFH--AIINPVYRPAGEETRSFYEGCLSF 132
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
+GY+AV +RYLDI D DG+ + GW ARI QHE DHL G LY+D+ ++
Sbjct: 133 DGYQAVRKRYLDIIAHWHDEDGKEHEEHLHGWPARIFQHETDHLSGELYIDQAEIRSLTT 192
Query: 247 VENLD 251
VENL+
Sbjct: 193 VENLE 197
>gi|383648814|ref|ZP_09959220.1| peptide deformylase [Streptomyces chartreusis NRRL 12338]
Length = 214
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 100/164 (60%), Gaps = 11/164 (6%)
Query: 78 IVQAGDPVLHEPAREVDP--GEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
IV AGDPVL R +P G++G + ++ + MR+APGVGLAAPQ+GVPLR+ V
Sbjct: 26 IVAAGDPVLR---RGTEPYEGQLGPALLARFVEALRITMRAAPGVGLAAPQVGVPLRVAV 82
Query: 136 LEDTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+ED EE++ A R P +++NP + A FFEGCLSV G++AVV
Sbjct: 83 IEDPAPV-----PEEVRLARGRVPQPFRVLVNPAYEPVGGARAAFFEGCLSVPGWQAVVA 137
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
R ++ +TG D G + TGW ARI+QHE DHLDG LY+D+
Sbjct: 138 RPAEVRLTGQDEHGHALDEVFTGWPARIVQHETDHLDGVLYLDR 181
>gi|327287510|ref|XP_003228472.1| PREDICTED: peptide deformylase, mitochondrial-like [Anolis
carolinensis]
Length = 236
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 101/175 (57%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+P ++ + +Q +I +V++MR V L+APQ+G+PL++ V E
Sbjct: 60 VCQVGDPVLRSLAAPVEPSQVTGKDVQALIQRLVRLMRRERCVALSAPQVGIPLQVFVAE 119
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + +A PF L + +NP ++ + EGC SV+G+ A V R+L
Sbjct: 120 YPTRLLEEHPPDVRQARQMAPFPLRVFINPTMRVLDSQVVSHPEGCRSVHGFSACVPRFL 179
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
++V GL+ G+ +A GW ARI+QHE DHL G LYVD+M +TF V D+
Sbjct: 180 AVQVAGLNEAGEESSWEACGWAARIVQHEMDHLQGILYVDRMESRTFTSVRWADV 234
>gi|321463123|gb|EFX74141.1| hypothetical protein DAPPUDRAFT_307445 [Daphnia pulex]
Length = 234
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 109/205 (53%), Gaps = 3/205 (1%)
Query: 45 TFSPHRKARTTSAISKAG-WLLGLGQNKKAKLP--EIVQAGDPVLHEPAREVDPGEIGSE 101
FS R S+ K W L K P + Q GDP L + EV E+ SE
Sbjct: 11 NFSGPTSVRYLSSFEKFKRWYRDLWYPKGPAPPFKHVSQLGDPTLRLKSSEVVLDELSSE 70
Query: 102 RIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDL 161
RI+NI+ + VM+ +G++APQIG+PLRII++E + E K + P
Sbjct: 71 RIKNILLVLRGVMKHYKAIGISAPQIGIPLRIIMIEIPDSLVEKFGPETCKTREIVPTPF 130
Query: 162 LMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQAR 221
+ +NP ++ K + LF E C S+ G A+V RY + V G + DG P + DATGW AR
Sbjct: 131 KVFINPVMQVKDFKKTLFPEACESLKGISAIVPRYRAVHVKGYEYDGSPTEWDATGWAAR 190
Query: 222 ILQHECDHLDGTLYVDKMVPKTFRI 246
I+QHE DHLDG +Y D M K+ ++
Sbjct: 191 IVQHEMDHLDGQIYTDIMESKSLQV 215
>gi|334313034|ref|XP_003339811.1| PREDICTED: peptide deformylase, mitochondrial-like [Monodelphis
domestica]
Length = 234
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 104/175 (59%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q G+P L A VDP ++ +Q +I +V+VMR+ VGL+APQ+GV L+++ +E
Sbjct: 58 VCQVGEPALRAVAAPVDPAQLAGPEMQALIAHLVRVMRAQGAVGLSAPQLGVALQVLAVE 117
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + +A P L + +NP+++ R F EGCLSV G+ A V R+
Sbjct: 118 FPERLLLTYPHAVRQARRMAPCPLRVFVNPRVRVLDTRLDSFPEGCLSVAGFVACVPRWR 177
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
+E+ GL+ +G+ + ATGW ARI+QHE DHL G L++DKM KTF V +++
Sbjct: 178 AVEIEGLNENGESVVWQATGWPARIIQHEMDHLQGCLFIDKMDSKTFTNVRWMEV 232
>gi|386867469|ref|YP_006280463.1| peptide deformylase [Bifidobacterium animalis subsp. animalis ATCC
25527]
gi|385701552|gb|AFI63500.1| peptide deformylase [Bifidobacterium animalis subsp. animalis ATCC
25527]
Length = 217
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 100/174 (57%), Gaps = 6/174 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+AG+PVL E D G++ + +I+ M K M APGVGLA PQIG+ L I V+E
Sbjct: 30 IVEAGEPVLREQCVRYD-GQLSKHTLHKLIETMHKTMLDAPGVGLAGPQIGLNLAIAVVE 88
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D EI F PF I+NP + ++T F+EGCLS +GY+AV +RYL
Sbjct: 89 DHANGDDDGDPREIAEF---PFH--AIINPVYRPAGEKTRSFYEGCLSFDGYQAVRKRYL 143
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
DI D DG+ + GW ARI QHE DHL G LY+D+ ++ VENL+
Sbjct: 144 DIIAHWHDEDGKEHEEHLHGWPARIFQHETDHLSGELYIDQAEIRSLTTVENLE 197
>gi|195055502|ref|XP_001994656.1| GH17360 [Drosophila grimshawi]
gi|193892419|gb|EDV91285.1| GH17360 [Drosophila grimshawi]
Length = 203
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 104/173 (60%), Gaps = 6/173 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL A EV I S+ I++I++ MVKV+R VG+AAPQ+GVP+RIIV+E
Sbjct: 16 FTQIGDPVLRLCAEEVSAERIASQEIKDIVEQMVKVLRHYDCVGVAAPQLGVPMRIIVME 75
Query: 138 ---DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E + + EE K L + +NP+++ SD+ EGC+SV GY A V
Sbjct: 76 FREGKREQFTPEVYEERKMSH---LPLTIFINPQIEIISDKQHTHPEGCMSVRGYSAKVS 132
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
RY + VTG+ G P +++ GW ARI QHE DHL+G +Y+D+M +F +
Sbjct: 133 RYDRVRVTGIGILGTPSELELVGWSARIAQHEMDHLNGIVYIDRMDVSSFTCI 185
>gi|260905538|ref|ZP_05913860.1| peptide deformylase [Brevibacterium linens BL2]
Length = 221
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+AGDP+L + R D G++ + + + M M +APGVGLA PQ+G+ L + V E
Sbjct: 28 IVEAGDPILRQTTRPFD-GQVDDAELAQLAEVMRATMLAAPGVGLAGPQVGIGLSMFVAE 86
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D E + R P L ++LN + + FFEGCLS+ GY+AVV R
Sbjct: 87 DPGSL----DPETAEVRQRSPMPLRVVLNAEYTPATSENVAFFEGCLSIPGYQAVVARPR 142
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
IE+TG+D +G PI GW ARI+ HE DHLDG +Y+DK
Sbjct: 143 SIELTGVDLNGTPIAEVVAGWSARIVAHETDHLDGIMYLDK 183
>gi|395771688|ref|ZP_10452203.1| peptide deformylase [Streptomyces acidiscabies 84-104]
Length = 212
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 109/192 (56%), Gaps = 8/192 (4%)
Query: 70 NKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
+ + LP IV AGDPVL + G++ + I+ + M +APGVGLAAPQ+GV
Sbjct: 17 STEGPLP-IVAAGDPVLRASTPRYE-GQLAPTLLARFIEALRVTMHAAPGVGLAAPQVGV 74
Query: 130 PLRIIVLEDTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNG 188
PLRI V+ED EEIKA R P +++NP + A F+EGCLSV G
Sbjct: 75 PLRIAVIEDPATV-----PEEIKAARSRAPQPFRVLINPSYEGVGPGRAAFYEGCLSVPG 129
Query: 189 YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVE 248
Y+AVV R+ ++ + G D G+ + +GW ARI+QHE DHLDG LY+D+ ++ E
Sbjct: 130 YQAVVARHAEVRLKGEDETGRILDEVFSGWAARIVQHETDHLDGGLYLDRAELRSLAASE 189
Query: 249 NLDLPLAEGCPK 260
L +G P+
Sbjct: 190 VLAERWGQGTPR 201
>gi|296231447|ref|XP_002761154.1| PREDICTED: peptide deformylase, mitochondrial [Callithrix jacchus]
Length = 243
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 98/167 (58%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+ ++G +Q ++ +V+VMR VGL+APQ+GVP +++ LE
Sbjct: 67 VCQVGDPVLRGVAAPVEREQLGGPELQRLVQRLVQVMRRQHCVGLSAPQLGVPRQVLALE 126
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
T+ + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 127 LTQALCQKTPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQ 186
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+E++GL+ +G+ + A+GW ARI+QHE DHL G L++DKM TF
Sbjct: 187 AVEISGLNPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSTTF 233
>gi|432863981|ref|XP_004070218.1| PREDICTED: peptide deformylase, mitochondrial-like, partial
[Oryzias latipes]
Length = 230
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 94/155 (60%), Gaps = 4/155 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A VDP I +Q++I +MVKVMR VGL+APQIGVPLRI+ LE
Sbjct: 78 VCQVGDPVLRSHAAPVDPAAIMGPEVQHVIKNMVKVMRKLECVGLSAPQIGVPLRILALE 137
Query: 138 DTKEYISYQSK--EEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
K+ + S E + +P L + +NP+L+ RT F E C S+ G+ A V R
Sbjct: 138 YPKKMLEESSPAVREARGITVQP--LRIFVNPQLRVMDGRTVQFQEACESICGFSATVPR 195
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHL 230
YL +EV+G++ + + A+GW ARI+QHE DHL
Sbjct: 196 YLSVEVSGVNEKAEAVSWQASGWAARIVQHEMDHL 230
>gi|395748035|ref|XP_003780572.1| PREDICTED: LOW QUALITY PROTEIN: peptide deformylase, mitochondrial,
partial [Pongo abelii]
Length = 212
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 102/180 (56%)
Query: 65 LGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAA 124
L LG + + Q GDP+L A V+ ++G +Q + +V+VMR VGL+A
Sbjct: 23 LVLGPSPNPPFLHVCQVGDPLLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSA 82
Query: 125 PQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
PQ+GVP +++ LE T+ + PF L + +NP L+ R F EGC
Sbjct: 83 PQLGVPRQVLALELTEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCE 142
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
SV G+ A V R+ ++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF
Sbjct: 143 SVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 202
>gi|302523131|ref|ZP_07275473.1| polypeptide deformylase [Streptomyces sp. SPB78]
gi|302432026|gb|EFL03842.1| polypeptide deformylase [Streptomyces sp. SPB78]
Length = 214
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 106/173 (61%), Gaps = 5/173 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL PA + G++ + ++ M + MR APGVGLAAPQIGVPLR+ VLE
Sbjct: 26 IVAAGDPVLRTPAAPYE-GQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVLE 84
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + ++ + P+ +L+ NP + +R A F+EGCLSV G++AVV R+
Sbjct: 85 DPA--TVPEEVRRVREREPLPYRVLV--NPVYEGVGERRAAFYEGCLSVPGWQAVVARHA 140
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+ + D G + + GW ARI+QHE DHLDGTLYVD+ +P++ ENL
Sbjct: 141 VVRLRAEDEHGTALDEEVRGWPARIVQHETDHLDGTLYVDRALPRSLTSNENL 193
>gi|29833891|ref|NP_828525.1| peptide deformylase [Streptomyces avermitilis MA-4680]
gi|39931072|sp|Q825U9.1|DEF3_STRAW RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName:
Full=Polypeptide deformylase 3
gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
Length = 224
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++G + ++ + M +APGVGLAAPQ+GV LRI V+E
Sbjct: 35 IVAAGDPVLRRGAEPYD-GQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 93
Query: 138 DTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE+ A R P +++NP + A FFEGCLSV G++AVV R
Sbjct: 94 DPAPV-----PEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARP 148
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+ +T LD G+ + + TGW ARI+QHE DHLDG LY+D+ ++ E + L ++
Sbjct: 149 ARVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAELRSLSSNEAMALRWSQ 208
Query: 257 GCPK 260
P+
Sbjct: 209 PTPE 212
>gi|334336222|ref|YP_004541374.1| peptide deformylase [Isoptericola variabilis 225]
gi|334106590|gb|AEG43480.1| Peptide deformylase [Isoptericola variabilis 225]
Length = 231
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 16/193 (8%)
Query: 64 LLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLA 123
LL + + + + IVQAGDPVL PA G++G E + ++D M + M +APGVGLA
Sbjct: 28 LLDVAEERGGGVLPIVQAGDPVLRRPAAPYT-GQLGDE-LGRLLDVMRRTMHTAPGVGLA 85
Query: 124 APQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLK------KKSDRTA 177
APQ+G+PL I V+ED +R P +++NP+ + +R A
Sbjct: 86 APQVGIPLAIAVVEDA-------GAPADDPRERTPLPYRVLVNPRYEPVPGPGGAPERVA 138
Query: 178 LFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
F+EGCLSV G++AVV RY + +TG D G + TGW ARI+QHE DHL G LY+D
Sbjct: 139 -FYEGCLSVRGWQAVVARYRSVRLTGQDETGAALDEVLTGWPARIVQHETDHLAGELYLD 197
Query: 238 KMVPKTFRIVENL 250
++ ENL
Sbjct: 198 HAETRSLASNENL 210
>gi|351694489|gb|EHA97407.1| Peptide deformylase, mitochondrial [Heterocephalus glaber]
Length = 237
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 106/177 (59%), Gaps = 4/177 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+P ++ +Q ++ +V+VMR VGL+APQ+GVPL+++ LE
Sbjct: 61 VCQVGDPVLRVVAAPVEPAQLAGPELQKLVQKLVQVMRRRRCVGLSAPQLGVPLQVLALE 120
Query: 138 DTKEYISYQSKE--EIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+E + E++ D PF L + +NP L+ F EGC SV G+ A V R
Sbjct: 121 LPEELFRACAPRLRELRQMD--PFPLRVFVNPSLRVLDRSLVTFPEGCESVAGFLAYVPR 178
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
+ ++++GL+ G+ + A+GW ARI+QHE DHL G L++DKM +TF + +++
Sbjct: 179 FQAVQISGLNPRGEQVVWQASGWTARIIQHEMDHLQGCLFIDKMDSRTFTNIHWMEV 235
>gi|322690616|ref|YP_004220186.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
gi|320455472|dbj|BAJ66094.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217]
Length = 217
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K KL IVQAG+PVL + + G++ + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEKLLPIVQAGEPVLRQRTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NP K SD+TA F+EGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTNENLE 197
>gi|419851192|ref|ZP_14374144.1| peptide deformylase [Bifidobacterium longum subsp. longum 35B]
gi|386406887|gb|EIJ21880.1| peptide deformylase [Bifidobacterium longum subsp. longum 35B]
Length = 217
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 102/180 (56%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K KL IVQAG+PVL + G++ + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEKLLPIVQAGEPVLRQRTVAYH-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NP K SD+TA F+EGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTTENLE 197
>gi|307181864|gb|EFN69304.1| Peptide deformylase, mitochondrial [Camponotus floridanus]
Length = 238
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 97/176 (55%)
Query: 70 NKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
+KK + Q GDPVL A +++P I E Q +I ++ +MRS G++ PQIG+
Sbjct: 41 SKKLPYKHVCQIGDPVLRGHAMKIEPEVIKLEDFQKVITHLINIMRSYDACGMSGPQIGL 100
Query: 130 PLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
P +I +E T E++ + KA++ + + +NP+LK + +EGC SV GY
Sbjct: 101 PWQIFAIEHTMEHMKTSDEVIKKAYEMEVIPVTIFINPELKIIDHTPIILYEGCESVRGY 160
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
A V R +IE+T L+ + GW ARI QHE DHL G LY+DKM TF+
Sbjct: 161 SAAVPRAYEIEITALNASAEQFTWRGRGWSARIAQHEYDHLQGELYIDKMDMSTFQ 216
>gi|417397813|gb|JAA45940.1| Putative peptide deformylase [Desmodus rotundus]
Length = 248
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 98/167 (58%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL + V+ ++ +Q ++ +V+VMR VGL+APQ+GVPL+++ LE
Sbjct: 72 VCQVGDPVLRAVSAPVESAQLAGPELQLLVQRLVQVMRRQRCVGLSAPQLGVPLQVLALE 131
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 132 FPEALFRACAPRLRETRQMEPFPLRVFVNPSLRVLDSRLVTFSEGCESVAGFLACVPRFQ 191
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD G+ + A+GW ARI+QHE DHL G L++DKM KTF
Sbjct: 192 AVQISGLDPRGEQMVWQASGWAARIIQHEMDHLQGCLFIDKMDSKTF 238
>gi|23335362|ref|ZP_00120599.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum
DJO10A]
gi|23465752|ref|NP_696355.1| peptide deformylase [Bifidobacterium longum NCC2705]
gi|189439807|ref|YP_001954888.1| peptide deformylase [Bifidobacterium longum DJO10A]
gi|227546365|ref|ZP_03976414.1| peptide deformylase [Bifidobacterium longum subsp. longum ATCC
55813]
gi|239622367|ref|ZP_04665398.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|312133213|ref|YP_004000552.1| def2 [Bifidobacterium longum subsp. longum BBMN68]
gi|322688630|ref|YP_004208364.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
gi|384202012|ref|YP_005587759.1| peptide deformylase [Bifidobacterium longum subsp. longum KACC
91563]
gi|419848618|ref|ZP_14371711.1| peptide deformylase [Bifidobacterium longum subsp. longum 1-6B]
gi|419854460|ref|ZP_14377248.1| peptide deformylase [Bifidobacterium longum subsp. longum 44B]
gi|39931158|sp|Q8G534.1|DEF1_BIFLO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|23326438|gb|AAN24991.1| polypeptide deformylase [Bifidobacterium longum NCC2705]
gi|189428242|gb|ACD98390.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A]
gi|227213346|gb|EEI81218.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239514364|gb|EEQ54231.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|291517274|emb|CBK70890.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp.
longum F8]
gi|311772414|gb|ADQ01902.1| Def2 [Bifidobacterium longum subsp. longum BBMN68]
gi|320459966|dbj|BAJ70586.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F]
gi|338755019|gb|AEI98008.1| peptide deformylase [Bifidobacterium longum subsp. longum KACC
91563]
gi|386407151|gb|EIJ22131.1| peptide deformylase [Bifidobacterium longum subsp. longum 1-6B]
gi|386417800|gb|EIJ32272.1| peptide deformylase [Bifidobacterium longum subsp. longum 44B]
Length = 217
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K KL IVQAG+PVL + + G++ + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEKLLPIVQAGEPVLRQRTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NP K SD+TA F+EGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTNENLE 197
>gi|383857357|ref|XP_003704171.1| PREDICTED: peptide deformylase, mitochondrial-like [Megachile
rotundata]
Length = 241
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 106/198 (53%), Gaps = 10/198 (5%)
Query: 50 RKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVD-PGEIGSERIQNIID 108
+K R+ S SK K I Q GDPVL A VD + ++ Q ++D
Sbjct: 33 QKVRSISFFSKPS---------KPPYEHICQIGDPVLRTVAPPVDLKSTVHTKDFQKLLD 83
Query: 109 DMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPK 168
+ +VMR GLAAPQIGV L++ V+E ++++ + F+ P L +NPK
Sbjct: 84 QLCRVMRRYTMCGLAAPQIGVSLQVFVIELREKFVMRIPPAAREHFEMEPVPLTYFINPK 143
Query: 169 LKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECD 228
++ + F E C S+ G+ AVV R I++T DR G+P +A+GW ARI QHE D
Sbjct: 144 MRIVNSEETEFPEYCGSITGFEAVVPRAKQIKLTAFDRLGEPFIWNASGWAARIAQHEFD 203
Query: 229 HLDGTLYVDKMVPKTFRI 246
HL G LYVDKM P TF+
Sbjct: 204 HLQGVLYVDKMDPTTFQF 221
>gi|302540288|ref|ZP_07292630.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
gi|302457906|gb|EFL20999.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
Length = 225
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG PVL + A D G++ ++ ++ M + M +APGVGLAAPQIGVPLR+ V+E
Sbjct: 22 IVSAGLPVLRQAALPYD-GQLPDGQLDRLLRAMRETMHNAPGVGLAAPQIGVPLRLAVIE 80
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D E + E +A R P +++NP + D A FFEGCLSV G++AVV R
Sbjct: 81 DPAEV----ATEVREARGRVPQPYRVLVNPSYEPVGDARAAFFEGCLSVPGWQAVVSRPE 136
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
I + G D G+ + + TGW ARI+QHE DHLDG LY+D
Sbjct: 137 RIRLRGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176
>gi|332669559|ref|YP_004452567.1| peptide deformylase [Cellulomonas fimi ATCC 484]
gi|332338597|gb|AEE45180.1| Peptide deformylase [Cellulomonas fimi ATCC 484]
Length = 321
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 6/180 (3%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
K+P IVQAG PVL A D G++ + +++++ M M +APGVGLAAPQIG+P+
Sbjct: 29 GKVP-IVQAGHPVLRAQALPYD-GQLADDELESLVHVMRATMHAAPGVGLAAPQIGLPVA 86
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ VLED+ + + +R P + +++NP+ D F+EGCLSV GY+AV
Sbjct: 87 VAVLEDSGP----PDGDVAQVRERAPLEFRVLVNPRYAAVDDERRAFYEGCLSVVGYQAV 142
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
V R + + G D G+P+ TGW ARI+QHE DHL G LY+D+ ++ + L L
Sbjct: 143 VARPRRVHLVGADERGRPLDEVLTGWPARIVQHETDHLGGVLYLDRAELRSLAAADALGL 202
>gi|440697053|ref|ZP_20879494.1| peptide deformylase [Streptomyces turgidiscabies Car8]
gi|440280668|gb|ELP68371.1| peptide deformylase [Streptomyces turgidiscabies Car8]
Length = 213
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 98/162 (60%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL + G++G + + ++ + + M +APGVGLAAPQ+GV LRI V+E
Sbjct: 26 IVAAGDPVLRRASVPFG-GQLGPDLLARFVEALRETMYAAPGVGLAAPQVGVGLRIAVIE 84
Query: 138 DTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ R P +++NP + A FFEGCLSV G++AVV R
Sbjct: 85 DPAPV-----PEEVRVVRGRVPLPFRVLVNPSYEAVGTERAAFFEGCLSVPGWQAVVSRP 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ +TG D G+ + TGW ARI+QHE DHLDGTLY+D+
Sbjct: 140 AAVRLTGQDEYGRAVDEVFTGWPARIVQHETDHLDGTLYLDR 181
>gi|213692889|ref|YP_002323475.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|384200112|ref|YP_005585855.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213524350|gb|ACJ53097.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|320459064|dbj|BAJ69685.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
Length = 217
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K K+ IVQAG+PVL + + G++ + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEKILPIVQAGEPVLRQRTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NP K SD+TA F+EGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTNENLE 197
>gi|11641243|ref|NP_071736.1| peptide deformylase, mitochondrial precursor [Homo sapiens]
gi|17433054|sp|Q9HBH1.1|DEFM_HUMAN RecName: Full=Peptide deformylase, mitochondrial; AltName:
Full=Polypeptide deformylase; Flags: Precursor
gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like protein [Homo sapiens]
gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like protein [Homo sapiens]
gi|38230771|gb|AAR14341.1| peptide deformylase [synthetic construct]
gi|119603671|gb|EAW83265.1| hCG2027080, isoform CRA_a [Homo sapiens]
gi|119603674|gb|EAW83268.1| hCG2027080, isoform CRA_a [Homo sapiens]
Length = 243
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVP +++ LE
Sbjct: 67 VCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALE 126
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + + +A + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 127 -LPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF
Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 233
>gi|18043802|gb|AAH19912.1| Peptide deformylase (mitochondrial) [Homo sapiens]
Length = 243
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVP +++ LE
Sbjct: 67 VCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALE 126
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + + +A + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 127 -LPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF
Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 233
>gi|410215864|gb|JAA05151.1| peptide deformylase (mitochondrial) [Pan troglodytes]
gi|410296168|gb|JAA26684.1| peptide deformylase (mitochondrial) [Pan troglodytes]
Length = 243
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVP +++ LE
Sbjct: 67 VCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALE 126
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + + +A + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 127 -LPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF
Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 233
>gi|269955472|ref|YP_003325261.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
gi|269304153|gb|ACZ29703.1| Peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
Length = 223
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 17/180 (9%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQ+GDPVL PA G++G + + + + M + M +APGVGLAAPQ+G+ L + V+E
Sbjct: 32 IVQSGDPVLRTPAAPYT-GQLG-DLLPRLAEVMRRTMHAAPGVGLAAPQVGIGLALAVVE 89
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSD-------RTALFFEGCLSVNGYR 190
D E +R P ++ NP + ++ R FFEGCLS++G+
Sbjct: 90 D--------RGNESDPRERTPLPFRLLANPAYEPVAEEGPSGTLRRVPFFEGCLSIDGWH 141
Query: 191 AVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
A+V R+ + +TG D DG PI TGW ARI+QHE DHL G LY+D VP++F NL
Sbjct: 142 ALVARHHRVRLTGQDADGAPIDEVLTGWPARIIQHETDHLRGELYLDHAVPRSFVSNANL 201
>gi|443622086|ref|ZP_21106629.1| putative Peptide deformylase 3 [Streptomyces viridochromogenes
Tue57]
gi|443344442|gb|ELS58541.1| putative Peptide deformylase 3 [Streptomyces viridochromogenes
Tue57]
Length = 228
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 97/162 (59%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL D G++ + ++ + M +APGVGLAAPQ+GVPLR+ V+E
Sbjct: 40 IVTAGDPVLRRRTEPFD-GQLDPALLARFVEALRITMHAAPGVGLAAPQVGVPLRVAVIE 98
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D +E++ A R P +++NP + A FFEGCLSV GY+AVV R
Sbjct: 99 DPAPV-----PQEVRLARGRVPQPFRVLVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARP 153
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
++ +TG D G+ + TGW ARI+QHE DHLDG LY+D+
Sbjct: 154 AEVRLTGADEHGRAVDEVFTGWPARIVQHETDHLDGVLYLDR 195
>gi|226438315|pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438316|pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438317|pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438318|pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438319|pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438320|pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438321|pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
gi|226438322|pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
Length = 183
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVP +++ LE
Sbjct: 7 VCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALE 66
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + + +A + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 67 -LPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 125
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF
Sbjct: 126 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 173
>gi|340725227|ref|XP_003400974.1| PREDICTED: hypothetical protein LOC100650902 [Bombus terrestris]
Length = 525
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 105/176 (59%), Gaps = 10/176 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I Q G+P+L + A VD EI + Q ++D + K+++ + VGLAAPQIG+ +I +E
Sbjct: 340 ICQVGNPILRQKASPVDTKEIHTVEFQKVLDHLHKILKKSDTVGLAAPQIGLSWQIFAIE 399
Query: 138 DTKEYI-----SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
T++Y+ S +S +I+ PF L +NP++K + +F+E C S+N ++A
Sbjct: 400 VTEDYVKDIHPSIRSHCQIE-----PFPLTYFINPEMKIINPEELIFYETCGSLNHFQAE 454
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVE 248
V R +I++ LDR G+P A GW ARI+ HE DHL G +Y D+M P TF ++
Sbjct: 455 VPRPKEIQIKALDRFGKPFCWKANGWLARIVHHEMDHLKGLIYTDRMFPLTFDYID 510
>gi|296453662|ref|YP_003660805.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
gi|296183093|gb|ADG99974.1| Peptide deformylase [Bifidobacterium longum subsp. longum JDM301]
Length = 217
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K K+ IVQAG+PVL + + G++ + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEKILPIVQAGEPVLRQRTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NP + SD+TA F+EGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPSYRPTSDKTASFYEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTNENLE 197
>gi|395837135|ref|XP_003791498.1| PREDICTED: peptide deformylase, mitochondrial [Otolemur garnettii]
Length = 254
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 108/177 (61%), Gaps = 4/177 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+ ++ +Q ++ +V+VMR VGL+APQ+GVPL+++ LE
Sbjct: 78 VCQVGDPVLRTVAAPVERAQLAGPDLQRLVQRLVQVMRRRRCVGLSAPQLGVPLQVLALE 137
Query: 138 DTKE-YISYQSK-EEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ Y +Y + E++ + PF L + +NP ++ +R F EGC SV G+ A V R
Sbjct: 138 LPEALYRAYAPRVRELRQIE--PFPLRVFVNPSMRVLDNRLVTFSEGCESVAGFLACVPR 195
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
+ ++++GLD G+ + A+ W ARI+QHE DHL G L++DKM +TF V +++
Sbjct: 196 FQAVQISGLDPGGEHVVWQASDWAARIVQHEMDHLQGCLFIDKMDSRTFTNVHWMEV 252
>gi|336319978|ref|YP_004599946.1| Peptide deformylase [[Cellvibrio] gilvus ATCC 13127]
gi|336103559|gb|AEI11378.1| Peptide deformylase [[Cellvibrio] gilvus ATCC 13127]
Length = 216
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 101/161 (62%), Gaps = 5/161 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+AG PVL A D G++ + + ++ M + MR+APGVGLAAPQ+ +PL + V+E
Sbjct: 26 IVRAGHPVLRAVALPYD-GQLDDDELAALLALMHRTMRAAPGVGLAAPQVALPLALAVVE 84
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + ++ E++ +R P +++NP + S A F+EGCLSV Y+AVV R+
Sbjct: 85 DPG--VPSETLTEVR--ERAPLAFRVLVNPGYEAVSGERASFYEGCLSVPAYQAVVARHR 140
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ +TG D G+ + TGW ARI+QHE DHL GTLY+D+
Sbjct: 141 AVRLTGFDETGRALDEVVTGWAARIVQHETDHLRGTLYLDR 181
>gi|296130447|ref|YP_003637697.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
gi|296022262|gb|ADG75498.1| Peptide deformylase [Cellulomonas flavigena DSM 20109]
Length = 230
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG PVL AR D G++ + ++ + + MR+APGVGLAAPQIG+PL + V+E
Sbjct: 30 IVQAGHPVLRAMARPYD-GQVDDAELTELLALLHRTMRAAPGVGLAAPQIGLPLALAVVE 88
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D E + +R +++NP D F+EGCLSV GY+AVV R
Sbjct: 89 DP----GTGDGEAARVRERPVLPYRVLVNPTYAPAGDELVAFYEGCLSVEGYQAVVPRQR 144
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ +TGLD G + TGW ARI+QHE DHL GTLY+D+ + ++
Sbjct: 145 AVHLTGLDETGATLDEVVTGWPARIVQHETDHLHGTLYLDRALTRSL 191
>gi|408500666|ref|YP_006864585.1| peptide deformylase [Bifidobacterium asteroides PRL2011]
gi|408465490|gb|AFU71019.1| peptide deformylase [Bifidobacterium asteroides PRL2011]
Length = 217
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 113/211 (53%), Gaps = 16/211 (7%)
Query: 40 FSNDVTFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIG 99
F F R S +++AG K +L IVQ G+PVL + A+ G++
Sbjct: 2 FGRKAAFDADLNNRVESMLAEAG---------KEELLPIVQMGEPVLRQQAQPYK-GQLA 51
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
++ + ++ M M APGVGLAAPQ+G+ L I V+ED +++ + D PF
Sbjct: 52 AKTLSRLLKAMRATMLEAPGVGLAAPQVGLGLAIAVIEDHVR----DDEDDPRQIDELPF 107
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
+ I+NP + TA F+EGCLS+ G++AV R+LDI + DR G+ + GW
Sbjct: 108 RV--IINPSYEPIGQETAAFYEGCLSLEGFQAVRRRWLDITASWEDRSGRKHRQRMHGWP 165
Query: 220 ARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
ARI QHE DHL G +Y+DK ++ +NL
Sbjct: 166 ARIFQHETDHLSGEVYIDKAEIRSLSSDDNL 196
>gi|425736529|ref|ZP_18854832.1| peptide deformylase [Brevibacterium casei S18]
gi|425478064|gb|EKU45268.1| peptide deformylase [Brevibacterium casei S18]
Length = 221
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 92/161 (57%), Gaps = 5/161 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDP+L P G++ + + + M K MR APGVGLA PQ+GV L I V E
Sbjct: 28 IVGAGDPILRTPVLPYS-GQVDDATLARLAEVMAKTMREAPGVGLAGPQVGVGLSIFVAE 86
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + + +R P L +LN + + + A F+EGCLS+ GY+AVV R
Sbjct: 87 DPAAVSAEVAAVR----EREPLPLRTVLNAQYEPVTGELAAFYEGCLSIPGYQAVVARPR 142
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I + G+D G PI + TGW ARI+ HE DHLDG L++DK
Sbjct: 143 TIGLRGVDLTGAPIDEEVTGWSARIVAHETDHLDGILFLDK 183
>gi|117165081|emb|CAJ88634.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
23877]
Length = 214
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL PA D G++ + ++ + MR+APGVGLAAPQ+GV LRI V+E
Sbjct: 26 IVAAGDPVLRRPAEPFD-GQLEPALLARFVEALRLTMRAAPGVGLAAPQVGVGLRIAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D +E++ A R P +++NP + A F+EGCLSV G++AVV R+
Sbjct: 85 DPAPV-----PDEVRVARGRVPQPFRVLVNPSYEPAGPGRAAFYEGCLSVPGWQAVVARH 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++ + D G+ + GW ARI+QHE DHLDG LY+D+ ++F
Sbjct: 140 AEVRLVARDEHGRAVDEVFEGWPARIVQHETDHLDGVLYLDRAELRSF 187
>gi|270284117|ref|ZP_05965571.2| peptide deformylase [Bifidobacterium gallicum DSM 20093]
gi|270277126|gb|EFA22980.1| peptide deformylase [Bifidobacterium gallicum DSM 20093]
Length = 221
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 105/185 (56%), Gaps = 7/185 (3%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L +K LP +V+ GDPVL A E G++ ++ + +I+ M M APGVG+AAPQ
Sbjct: 24 LKAHKAQPLP-MVEVGDPVLRAQA-EPYVGQLSAKTLAKLIEAMRVTMLDAPGVGVAAPQ 81
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
IG+ L V+ED + S + ++ + F PF + I+NP D+TA FFEGCLS
Sbjct: 82 IGLSLAFAVVED---HTSEEYDDDPREFAEFPFHV--IINPSYDPVGDKTAKFFEGCLSF 136
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
G++AV ERY+DI D G GW ARI QHE DHL G +Y+DK ++
Sbjct: 137 PGFQAVRERYVDIMAHWTDEQGVRHDEPLHGWPARIFQHETDHLSGEIYIDKAEIRSLTT 196
Query: 247 VENLD 251
ENLD
Sbjct: 197 DENLD 201
>gi|429203855|ref|ZP_19195165.1| peptide deformylase [Streptomyces ipomoeae 91-03]
gi|428660605|gb|EKX60151.1| peptide deformylase [Streptomyces ipomoeae 91-03]
Length = 218
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + I + M +APGVGLAAPQ+GV LRI V+E
Sbjct: 29 IVAAGDPVLRRTAEPFD-GQLDPALLARFIAALRATMHAAPGVGLAAPQVGVSLRIAVVE 87
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ A R P +++NP + FFEGCLSV G++AVV R+
Sbjct: 88 DPAPV-----PEEVRLARGRVPQPFRVLVNPSYEAVGPYRDAFFEGCLSVPGWQAVVARH 142
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ + LD GQ + + +GW ARI+QHE DHL+GTLY+D+
Sbjct: 143 AKVRLRALDEHGQAVDEEFSGWPARIVQHETDHLNGTLYLDR 184
>gi|339478752|gb|ABE95210.1| Peptide deformylase [Bifidobacterium breve UCC2003]
Length = 217
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K ++ IVQAG+PVL + + G++ + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEQILPIVQAGEPVLRQQTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NPK ++T FFEGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPKYTPVGEKTTSFFEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+DK ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEQLHGWPARIFQHETDHLSGELYIDKAEIRSLTTSENLE 197
>gi|291456210|ref|ZP_06595600.1| peptide deformylase [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|384197448|ref|YP_005583192.1| peptide deformylase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|417942796|ref|ZP_12586058.1| Peptide deformylase 1 (PDF 1) [Bifidobacterium breve CECT 7263]
gi|291381487|gb|EFE89005.1| peptide deformylase [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|333110436|gb|AEF27452.1| peptide deformylase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|376166515|gb|EHS85416.1| Peptide deformylase 1 (PDF 1) [Bifidobacterium breve CECT 7263]
Length = 217
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 101/180 (56%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K ++ IVQAG+PVL + + G++ + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEQILPIVQAGEPVLRQQTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NPK ++T FFEGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPKYTPVGEKTTSFFEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+DK ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEQLHGWPARIFQHETDHLSGELYIDKAEIRSLTTSENLE 197
>gi|297204169|ref|ZP_06921566.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
gi|197714146|gb|EDY58180.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
Length = 218
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL + D G + + ++ + M +APGVGLAAPQ+GVPLRI V+E
Sbjct: 26 IVAAGDPVLRQGIEHYD-GHLDGALLSRFVEALRVTMHAAPGVGLAAPQVGVPLRIAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EEI+ A R P +++NP A FFEGCLSV G++AVV R
Sbjct: 85 DPAPV-----PEEIRLARGRVPQPFRVLVNPSYAPVGTPRAAFFEGCLSVPGWQAVVARP 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
++ +T D +G+ + +GW ARI+QHE DHLDG LY+D+
Sbjct: 140 AEVRLTCEDENGRAVDEVFSGWPARIVQHETDHLDGVLYLDR 181
>gi|443672771|ref|ZP_21137851.1| Peptide deformylase 4 [Rhodococcus sp. AW25M09]
gi|443414617|emb|CCQ16189.1| Peptide deformylase 4 [Rhodococcus sp. AW25M09]
Length = 239
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 101/183 (55%), Gaps = 6/183 (3%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L + + +P IV AG PVL A G++ ++ +I+ M MR APGVGLAAPQ
Sbjct: 39 LAEARGGVVP-IVAAGHPVLRSRAARY-AGQLDTDTFAELIEVMRATMRGAPGVGLAAPQ 96
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
IG+PL++ V+ED E + +R P +++NP+ +T FFEGCLSV
Sbjct: 97 IGIPLQVAVIEDLYEV----GADVAHVRERTPLPFRVLVNPRYTPVGSQTVSFFEGCLSV 152
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
GY+AVV R ++ + D G+ I GW ARI+ HE DHLDGTLY+D ++
Sbjct: 153 PGYQAVVTRAREVRLECTDELGREIDEVLRGWPARIVAHETDHLDGTLYIDTAHTRSLTT 212
Query: 247 VEN 249
E
Sbjct: 213 SEQ 215
>gi|195107438|ref|XP_001998319.1| GI23899 [Drosophila mojavensis]
gi|193914913|gb|EDW13780.1| GI23899 [Drosophila mojavensis]
Length = 203
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 96/167 (57%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL + EV P + S+ I I+D MVKV+R VG+AAPQ+GVPLRII +E
Sbjct: 16 FTQIGDPVLRIRSDEVSPERLDSKEILGIVDQMVKVLRHYDCVGVAAPQLGVPLRIIAME 75
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+E + E L + +NPK++ D EGC+SV G+ A V RY
Sbjct: 76 FREEKREQFTPEVYLQRKMSTLPLSVFINPKIEIIGDMQHTQPEGCMSVRGFSARVARYD 135
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ VTG+ G P +++ GW ARI QHE DHL+G +Y+D+M +F
Sbjct: 136 RVRVTGIGMLGTPDELELVGWSARIAQHEMDHLNGIIYIDRMDVSSF 182
>gi|297243759|ref|ZP_06927689.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
gi|298252952|ref|ZP_06976746.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
gi|415708553|ref|ZP_11462567.1| peptide deformylase [Gardnerella vaginalis 6420LIT]
gi|415710365|ref|ZP_11463754.1| peptide deformylase [Gardnerella vaginalis 6420B]
gi|296888180|gb|EFH26922.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD]
gi|297533316|gb|EFH72200.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1]
gi|388054452|gb|EIK77390.1| peptide deformylase [Gardnerella vaginalis 6420LIT]
gi|388055605|gb|EIK78506.1| peptide deformylase [Gardnerella vaginalis 6420B]
Length = 217
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 98/174 (56%), Gaps = 7/174 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG+PVL + D G++ + +I M M APGVGLAAPQIG+ L I V+E
Sbjct: 31 IVQAGEPVLRQRTVAYD-GQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAVIE 89
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + +E D I+NP + +T F+EGCLSV+GY+AV +R+L
Sbjct: 90 D------HVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWL 143
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
DI+ T D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 144 DIQATWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAEMRSLSTDENLE 197
>gi|21219403|ref|NP_625182.1| peptide deformylase [Streptomyces coelicolor A3(2)]
gi|23396576|sp|Q9RD27.1|DEF1_STRCO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|6562865|emb|CAB62674.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
Length = 218
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + ++ + M +APGVGLAAPQ+GV LR+ V+E
Sbjct: 26 IVAAGDPVLRRAAEPYD-GQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D +E++ A R P +++NP + A FFEGCLSV G++AVV R+
Sbjct: 85 DPAPV-----PDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARH 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
++ + D G+ + GW ARI+QHE DHLDGTLY+D+
Sbjct: 140 AEVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181
>gi|289773445|ref|ZP_06532823.1| polypeptide deformylase [Streptomyces lividans TK24]
gi|289703644|gb|EFD71073.1| polypeptide deformylase [Streptomyces lividans TK24]
Length = 218
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + ++ + M +APGVGLAAPQ+GV LR+ V+E
Sbjct: 26 IVAAGDPVLRRAAEPYD-GQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D +E++ A R P +++NP + A FFEGCLSV G++AVV R+
Sbjct: 85 DPAPV-----PDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARH 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
++ + D G+ + GW ARI+QHE DHLDGTLY+D+
Sbjct: 140 AEVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181
>gi|195157968|ref|XP_002019866.1| GL12633 [Drosophila persimilis]
gi|194116457|gb|EDW38500.1| GL12633 [Drosophila persimilis]
Length = 238
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 102/192 (53%), Gaps = 3/192 (1%)
Query: 56 SAISKAGWLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVK 112
SA S W L ++ LP Q GDPVL + A V I I+ I++ MVK
Sbjct: 26 SAQSFRKWYQQLWTTERTNLPPYNHFTQIGDPVLRQQAAAVPLELIEGPEIEAIVEQMVK 85
Query: 113 VMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKK 172
V+R VG+AAPQIGV LRII +E K + +A L +++NP L
Sbjct: 86 VLRKYNCVGIAAPQIGVSLRIIAMEFKKSLQKEMPEAVYQARQMSELPLTVMINPVLTVT 145
Query: 173 SDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232
+ EGC+SV G+ A VER+ ++++GLD+ + + +GW ARI QHE DHLDG
Sbjct: 146 NYSKLKHPEGCMSVRGFSAEVERFEGVKLSGLDKSSKQNDLILSGWNARIAQHEMDHLDG 205
Query: 233 TLYVDKMVPKTF 244
LY D+M TF
Sbjct: 206 KLYTDQMDRSTF 217
>gi|229821583|ref|YP_002883109.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
gi|229567496|gb|ACQ81347.1| Peptide deformylase [Beutenbergia cavernae DSM 12333]
Length = 217
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 92/167 (55%), Gaps = 5/167 (2%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG PVL PA GE+G+ER +++ M MR+APGVGLAAPQIG+PL I V+E
Sbjct: 21 IVSAGAPVLRAPAARYG-GELGAERFHRLLEAMRVTMRTAPGVGLAAPQIGLPLAIAVIE 79
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D A +R P +++NP F+EGCLSV GY AV R+
Sbjct: 80 DP----GVDDDATAAARERVPVAFRVLVNPTYTPAGPERVSFYEGCLSVPGYVAVRARWR 135
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ + D G + + GW ARI+QHE DHL G LY+D P++
Sbjct: 136 RVRLLAADEAGNAVAEELAGWPARIVQHEVDHLAGELYLDAAAPRSL 182
>gi|283783592|ref|YP_003374346.1| peptide deformylase [Gardnerella vaginalis 409-05]
gi|415717654|ref|ZP_11466953.1| peptide deformylase [Gardnerella vaginalis 1500E]
gi|415725780|ref|ZP_11470331.1| peptide deformylase [Gardnerella vaginalis 00703Dmash]
gi|415728829|ref|ZP_11472167.1| peptide deformylase [Gardnerella vaginalis 6119V5]
gi|283442075|gb|ADB14541.1| peptide deformylase [Gardnerella vaginalis 409-05]
gi|388060731|gb|EIK83411.1| peptide deformylase [Gardnerella vaginalis 1500E]
gi|388064116|gb|EIK86679.1| peptide deformylase [Gardnerella vaginalis 00703Dmash]
gi|388064829|gb|EIK87344.1| peptide deformylase [Gardnerella vaginalis 6119V5]
Length = 217
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 98/174 (56%), Gaps = 7/174 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG+PVL + D G++ + +I M M APGVGLAAPQIG+ L I V+E
Sbjct: 31 IVQAGEPVLRQRTVAYD-GQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAVIE 89
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + +E D I+NP + +T F+EGCLSV+GY+AV +R+L
Sbjct: 90 D------HVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWL 143
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
D++ T D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 144 DVQATWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAEMRSLSTDENLE 197
>gi|193699878|ref|XP_001950597.1| PREDICTED: peptide deformylase, mitochondrial-like [Acyrthosiphon
pisum]
Length = 213
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+VQ GDPVL A V +IG++ +QN+I M +M+ + +GLAAPQ+G+P +I V+
Sbjct: 27 VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ Y SKEEI + + +NP+LK + F E C S GY A V RY
Sbjct: 87 FPRPS-HYFSKEEILLKGMEHVENQVWINPELKVLNHEKVTFNESCASFKGYSADVPRYK 145
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+ +TG+D +G+ +DA W ARI+QHE DHL+G +Y D+MV
Sbjct: 146 RVLLTGIDENGEKKTLDAKEWTARIVQHEMDHLNGVMYSDRMV 188
>gi|449681178|ref|XP_002163732.2| PREDICTED: peptide deformylase, mitochondrial-like [Hydra
magnipapillata]
Length = 238
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 99/186 (53%), Gaps = 4/186 (2%)
Query: 63 WLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGL 122
W L N ++ Q GDPVL + A+ VD I + + + D +V +R G G+
Sbjct: 43 WTSNLINNFTKDTHKVRQIGDPVLRQVAKPVDLATIVTPDFKKLCDRLVSTLRRHNGCGI 102
Query: 123 AAPQIGVPLRIIVLE----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL 178
AAPQIGVPL++I +E D K + + + F L +++NPK+K
Sbjct: 103 AAPQIGVPLQVIAVEFTGYDLKVAMDKYGSKGVSKLQMSLFPLKVMINPKIKIIDPTMLA 162
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
EGCLSV GYRA+V R +IEV L+ G + GW +RI+QHE DHL G L+VD
Sbjct: 163 LKEGCLSVKGYRALVPRAKEIEVEMLNVSGNTETFRSLGWTSRIIQHEVDHLQGNLFVDT 222
Query: 239 MVPKTF 244
M+ KT
Sbjct: 223 MLYKTL 228
>gi|350403957|ref|XP_003486963.1| PREDICTED: hypothetical protein LOC100748041 [Bombus impatiens]
Length = 430
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I Q G+P+L + A VD EI + Q ++D + K+++ + VGLAAPQIG+ ++ +E
Sbjct: 239 ICQVGNPILRQKASPVDTKEIHTVEFQKVLDHLYKILKKSDTVGLAAPQIGLSWQVFAIE 298
Query: 138 DTKEYISYQSKEEIKAFDR-----RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
T++Y+ +EI R PF L +NP+++ + +F E C SV + A
Sbjct: 299 VTEDYV-----KEIHPIIRSHCQIHPFPLTYFINPEMQIINPEELIFHETCGSVEHFHAE 353
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVE 248
V R +I++ LDR G+P A GW ARI HE DHL G +Y D+M P TF +E
Sbjct: 354 VPRPKEIQIKALDRFGKPFCWKANGWLARIAHHEMDHLKGLIYTDRMFPLTFDYIE 409
>gi|415716265|ref|ZP_11466292.1| peptide deformylase [Gardnerella vaginalis 1400E]
gi|388057527|gb|EIK80356.1| peptide deformylase [Gardnerella vaginalis 1400E]
Length = 217
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG+PVL + D G++ + +I M M APGVGLAAPQIG+ L I V+E
Sbjct: 31 IVQAGEPVLRQRTVAYD-GQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAVVE 89
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + +E D I+NP + +T F+EGCLSV GY+AV +R+L
Sbjct: 90 D------HVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWL 143
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
DI+ T D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 144 DIQATWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAEMRSLSTDENLE 197
>gi|125778498|ref|XP_001360007.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
gi|54639757|gb|EAL29159.1| GA16144 [Drosophila pseudoobscura pseudoobscura]
Length = 238
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 102/192 (53%), Gaps = 3/192 (1%)
Query: 56 SAISKAGWLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVK 112
SA S W L ++ LP Q GDPVL + A V I I+ I++ MVK
Sbjct: 26 SAQSFRKWYQQLWITERTNLPPYNHFTQIGDPVLRQQAAAVPLELIEGPEIEAIVEQMVK 85
Query: 113 VMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKK 172
V+R VG+AAPQIGV LRII +E K + +A L +++NP L
Sbjct: 86 VLRKYNCVGIAAPQIGVSLRIIAMEFKKSLQKEMPEAVYQARQMSELPLTVMINPVLTVT 145
Query: 173 SDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232
+ EGC+SV G+ A VER+ ++++GLD+ + + +GW ARI QHE DHLDG
Sbjct: 146 NYSKLKHPEGCMSVRGFSAEVERFEGVKLSGLDKSSKQNDLILSGWNARIAQHEMDHLDG 205
Query: 233 TLYVDKMVPKTF 244
LY D+M TF
Sbjct: 206 KLYTDQMDRSTF 217
>gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster]
gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster]
gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster]
gi|220952214|gb|ACL88650.1| CG31278-PA [synthetic construct]
Length = 238
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 63 WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
W L ++ LP Q GDPVL + A V + S I+ I++ MVKV+R
Sbjct: 33 WYQHLWTTERTNLPPYNHFTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDC 92
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI-KAFDRRPFDLLMILNPKLKKKSDRTAL 178
VG+AAPQIGV LRII +E K I + E + +A L + +NP L +
Sbjct: 93 VGIAAPQIGVSLRIIAME-FKGRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKLK 151
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
EGC+SV GY A VER+ +++TGLD+ G ++ +GW ARI QHE DHL+G LY D
Sbjct: 152 HPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDH 211
Query: 239 MVPKTF 244
M TF
Sbjct: 212 MDRSTF 217
>gi|415720361|ref|ZP_11467897.1| peptide deformylase [Gardnerella vaginalis 00703Bmash]
gi|415723650|ref|ZP_11469656.1| peptide deformylase [Gardnerella vaginalis 00703C2mash]
gi|388061860|gb|EIK84497.1| peptide deformylase [Gardnerella vaginalis 00703Bmash]
gi|388063498|gb|EIK86082.1| peptide deformylase [Gardnerella vaginalis 00703C2mash]
Length = 217
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG+PVL + D G++ + +I M M APGVGLAAPQIG+ L I V+E
Sbjct: 31 IVQAGEPVLRQRTVAYD-GQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAVVE 89
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + +E D I+NP + +T F+EGCLSV GY+AV +R+L
Sbjct: 90 D------HVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWL 143
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
DI+ T D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 144 DIQATWQDEDGKQHSQRLHGWPARIFQHETDHLRGELYIDRAEMRSLSSDENLE 197
>gi|308235345|ref|ZP_07666082.1| peptide deformylase [Gardnerella vaginalis ATCC 14018 = JCM 11026]
gi|311114315|ref|YP_003985536.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
gi|415702592|ref|ZP_11458738.1| peptide deformylase [Gardnerella vaginalis 284V]
gi|415713506|ref|ZP_11465210.1| peptide deformylase [Gardnerella vaginalis 55152]
gi|310945809|gb|ADP38513.1| peptide deformylase [Gardnerella vaginalis ATCC 14019]
gi|388053138|gb|EIK76129.1| peptide deformylase [Gardnerella vaginalis 284V]
gi|388055765|gb|EIK78652.1| peptide deformylase [Gardnerella vaginalis 55152]
Length = 217
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 98/174 (56%), Gaps = 7/174 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG+PVL + D G++ + +I M M APGVGLAAPQIG+ L I V+E
Sbjct: 31 IVQAGEPVLRQRTVAYD-GQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAVVE 89
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D ++ + PF I+NP + +T F+EGCLSV GY+AV +R+L
Sbjct: 90 DHVR----DDADDPRDIAELPF--RAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWL 143
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
DI+ T D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 144 DIQATWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAEMRSLSTDENLE 197
>gi|385802036|ref|YP_005838439.1| peptide deformylase [Gardnerella vaginalis HMP9231]
gi|415705651|ref|ZP_11460922.1| peptide deformylase [Gardnerella vaginalis 75712]
gi|415706575|ref|ZP_11461564.1| peptide deformylase [Gardnerella vaginalis 0288E]
gi|417556406|ref|ZP_12207465.1| peptide deformylase [Gardnerella vaginalis 315-A]
gi|333393571|gb|AEF31489.1| peptide deformylase [Gardnerella vaginalis HMP9231]
gi|333602901|gb|EGL14326.1| peptide deformylase [Gardnerella vaginalis 315-A]
gi|388052373|gb|EIK75397.1| peptide deformylase [Gardnerella vaginalis 75712]
gi|388054787|gb|EIK77722.1| peptide deformylase [Gardnerella vaginalis 0288E]
Length = 217
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 98/174 (56%), Gaps = 7/174 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG+PVL + D G++ + +I M M APGVGLAAPQIG+ L I V+E
Sbjct: 31 IVQAGEPVLRQRTVAYD-GQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAVVE 89
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D ++ + PF I+NP + +T F+EGCLSV GY+AV +R+L
Sbjct: 90 DHVR----DDADDPRDIAELPF--RAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWL 143
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
DI+ T D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 144 DIQATWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDRAEMRSLSTDENLE 197
>gi|212716218|ref|ZP_03324346.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660730|gb|EEB21305.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 218
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K +L IVQAG+PVL + + G++ + + +I+ M M APGVGLAA QIG+ L
Sbjct: 25 KEQLLPIVQAGEPVLRQQTAAYE-GQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED E F PF + I+NP + T F+EGCLS +GY+A
Sbjct: 84 ALAVVEDHVRDDDDDDPREAAEF---PFHV--IINPSYEPIGTETRSFYEGCLSFDGYQA 138
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ + GW ARI QHE DHL G LY+DK ++ ENL+
Sbjct: 139 VRKRWLDITARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDKAEIRSLATNENLE 198
>gi|195330061|ref|XP_002031727.1| GM26160 [Drosophila sechellia]
gi|194120670|gb|EDW42713.1| GM26160 [Drosophila sechellia]
Length = 238
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 102/186 (54%), Gaps = 5/186 (2%)
Query: 63 WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
W L ++ LP Q GDPVL + A V + S I+ I++ MVKV+R
Sbjct: 33 WYQQLWTTERTNLPPYNHFTQIGDPVLRQQAALVPKEHMDSPEIKAIVERMVKVLRKFDC 92
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI-KAFDRRPFDLLMILNPKLKKKSDRTAL 178
VG+AAPQIGV LRII +E K I + E + +A L + +NP L +
Sbjct: 93 VGIAAPQIGVSLRIIAME-FKGRIRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLK 151
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
EGC+SV GY A VER+ +++TGLD+ G ++ +GW ARI QHE DHL+G LY D
Sbjct: 152 HPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDH 211
Query: 239 MVPKTF 244
M TF
Sbjct: 212 MDRSTF 217
>gi|306822240|ref|ZP_07455622.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
gi|309802249|ref|ZP_07696357.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
gi|304554622|gb|EFM42527.1| peptide deformylase [Bifidobacterium dentium ATCC 27679]
gi|308221132|gb|EFO77436.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022]
Length = 242
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K KL IVQAG+PVL + + G++ + + +ID M M APGVGLAA QIG+ L
Sbjct: 49 KDKLLPIVQAGEPVLRQQTAAYE-GQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGL 107
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED E F PF + I+NP + +T F+EGCLS +GY+A
Sbjct: 108 ALAVVEDHVRDGDDGDPREAAEF---PFHV--IINPSYEPIGTQTRSFYEGCLSFDGYQA 162
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG + GW ARI QHE DHL G LY+DK ++ ENL+
Sbjct: 163 VRKRWLDITARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAEIRSLTTNENLE 222
>gi|390936333|ref|YP_006393892.1| peptide deformylase [Bifidobacterium bifidum BGN4]
gi|389889946|gb|AFL04013.1| peptide deformylase [Bifidobacterium bifidum BGN4]
Length = 217
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L K ++ IVQAG+PVL + + G++ + +ID M M APGVGLAA Q
Sbjct: 20 LKTGGKERILPIVQAGEPVLRQQTVQY-SGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQ 78
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
IG+ L + V+ED + +E + F +I+NP + D T F+EGCLS
Sbjct: 79 IGLGLALAVVED------HVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSF 132
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
+GY+AV R+LDI D +G+ + GW ARI QHE DHL G LY+DK ++
Sbjct: 133 DGYQAVRRRWLDITARWTDENGKQHEERLHGWPARIFQHETDHLSGELYIDKAEIRSLTT 192
Query: 247 VENLD 251
ENL+
Sbjct: 193 YENLE 197
>gi|421736878|ref|ZP_16175609.1| peptide deformylase [Bifidobacterium bifidum IPLA 20015]
gi|407295840|gb|EKF15491.1| peptide deformylase [Bifidobacterium bifidum IPLA 20015]
Length = 217
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L K ++ IVQAG+PVL + + G++ + +ID M M APGVGLAA Q
Sbjct: 20 LKTGGKERILPIVQAGEPVLRQQTVQY-SGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQ 78
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
IG+ L + V+ED + +E + F +I+NP + D T F+EGCLS
Sbjct: 79 IGLGLALAVVED------HVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSF 132
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
+GY+AV R+LDI D +G+ + GW ARI QHE DHL G LY+DK ++
Sbjct: 133 DGYQAVRRRWLDITARWTDENGKQHEERLHGWPARIFQHETDHLSGELYIDKAEIRSLTT 192
Query: 247 VENLD 251
ENL+
Sbjct: 193 YENLE 197
>gi|171742295|ref|ZP_02918102.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC
27678]
gi|171277909|gb|EDT45570.1| peptide deformylase [Bifidobacterium dentium ATCC 27678]
Length = 242
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K KL IVQAG+PVL + + G++ + + +ID M M APGVGLAA QIG+ L
Sbjct: 49 KDKLLPIVQAGEPVLRQQTAAYE-GQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGL 107
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED E F PF + I+NP + +T F+EGCLS +GY+A
Sbjct: 108 ALAVVEDHVRDGDDGDPREAAEF---PFHV--IINPSYEPIGTQTRSFYEGCLSFDGYQA 162
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG + GW ARI QHE DHL G LY+DK ++ ENL+
Sbjct: 163 VRKRWLDITARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAEIRSLTTNENLE 222
>gi|283456600|ref|YP_003361164.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1]
gi|283103234|gb|ADB10340.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1]
Length = 218
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K KL IVQAG+PVL + + G++ + + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KDKLLPIVQAGEPVLRQQTAAYE-GQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED E F PF + I+NP + +T F+EGCLS +GY+A
Sbjct: 84 ALAVVEDHVRDGDDGDPREAAEF---PFHV--IINPSYEPIGTQTRSFYEGCLSFDGYQA 138
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG + GW ARI QHE DHL G LY+DK ++ ENL+
Sbjct: 139 VRKRWLDITARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDKAEIRSLTTNENLE 198
>gi|380302179|ref|ZP_09851872.1| N-formylmethionyl-tRNA deformylase [Brachybacterium squillarum
M-6-3]
Length = 237
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGE-IGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
IVQAG P L R V P E + + + M MR APGVGLAAPQ+G+PLR++V+
Sbjct: 23 IVQAGHPALRR--RAVSPAERVEPALLAELAAAMTVTMRRAPGVGLAAPQVGIPLRLVVV 80
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV--E 194
ED + E+ +RRP L + +P L+ ++ + +EGCLSV+G+R++V
Sbjct: 81 EDAHASTPGEDPED-DLLERRPLPLRTLADPVLEPLGEQDVVAWEGCLSVSGWRSIVPRA 139
Query: 195 RYLDIEVTGLDRDGQPIKVDAT--GWQARILQHECDHLDGTLYVDKMVPKTF 244
R + + T LD GQ V+ GW ARILQHE DHL G L D+MVP+++
Sbjct: 140 RRVRLRATELDAAGQGTAVEEEHLGWTARILQHETDHLHGVLCHDRMVPRSY 191
>gi|311063862|ref|YP_003970587.1| peptide deformylase [Bifidobacterium bifidum PRL2010]
gi|421733896|ref|ZP_16172990.1| peptide deformylase [Bifidobacterium bifidum LMG 13195]
gi|310866181|gb|ADP35550.1| Peptide deformylase [Bifidobacterium bifidum PRL2010]
gi|407078196|gb|EKE51008.1| peptide deformylase [Bifidobacterium bifidum LMG 13195]
Length = 217
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L K ++ IVQAG+PVL + + G++ + +ID M M APGVGLAA Q
Sbjct: 20 LKTGGKERILPIVQAGEPVLRQQTVQY-SGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQ 78
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
IG+ L + V+ED + +E + F +I+NP + D T F+EGCLS
Sbjct: 79 IGLGLALAVVED------HVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSF 132
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
+GY+AV R+LDI D +G+ + GW ARI QHE DHL G LY+DK ++
Sbjct: 133 DGYQAVRRRWLDITARWADENGKQHEERLHGWPARIFQHETDHLSGELYIDKAEIRSLTT 192
Query: 247 VENLD 251
ENL+
Sbjct: 193 YENLE 197
>gi|195571953|ref|XP_002103965.1| GD20713 [Drosophila simulans]
gi|194199892|gb|EDX13468.1| GD20713 [Drosophila simulans]
Length = 239
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 101/186 (54%), Gaps = 5/186 (2%)
Query: 63 WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
W L ++ LP Q GDPVL + A V + S I I++ MVKV+R
Sbjct: 33 WYQQLWTTERTNLPPYNHFTQIGDPVLRQQAALVPKEHMDSPEIGAIVEQMVKVLRKFDC 92
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI-KAFDRRPFDLLMILNPKLKKKSDRTAL 178
VG+AAPQIGV LRII +E K I + E + +A L + +NP L +
Sbjct: 93 VGIAAPQIGVSLRIIAME-FKGRIRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLK 151
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
EGC+SV GY A VER+ +++TGLD+ G ++ +GW ARI QHE DHL+G LY D
Sbjct: 152 HPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDH 211
Query: 239 MVPKTF 244
M TF
Sbjct: 212 MDRSTF 217
>gi|195444659|ref|XP_002069969.1| GK11285 [Drosophila willistoni]
gi|194166054|gb|EDW80955.1| GK11285 [Drosophila willistoni]
Length = 173
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
Q GDPVL A EV ++ S I+ ID MV V+R VG+AAPQIGVPLRIIV+E
Sbjct: 9 FTQIGDPVLRRRAEEVSGDKVNSPEIKETIDCMVHVLRHYDCVGVAAPQIGVPLRIIVME 68
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E Q EI A + L + +NP+L+ +D+ EGC+SV GY A VER+
Sbjct: 69 -FHEGKKNQFPAEIYAERKMSTLSLAVFINPELEILNDKQHKHPEGCMSVRGYSAQVERH 127
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
+ V G+ G P +++ GW ARI QHE DHL+G +Y++ +P
Sbjct: 128 DRVRVKGIGMMGTPSELELEGWSARIAQHEMDHLNGIIYIEFNLP 172
>gi|310286987|ref|YP_003938245.1| peptide deformylase [Bifidobacterium bifidum S17]
gi|313139678|ref|ZP_07801871.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171]
gi|309250923|gb|ADO52671.1| Peptide deformylase [Bifidobacterium bifidum S17]
gi|313132188|gb|EFR49805.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171]
Length = 217
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 100/185 (54%), Gaps = 7/185 (3%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L K ++ IVQAG+PVL + + G++ + +ID M M APGVGLAA Q
Sbjct: 20 LKTGGKERILPIVQAGEPVLRQQTVQY-SGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQ 78
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
IG+ L + V+ED + +E + F I+NP + D T F+EGCLS
Sbjct: 79 IGLGLALAVVED------HVRDDEDDPREIAEFPFHAIINPSYEPIGDATRSFYEGCLSF 132
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
+GY+AV R+LDI D +G+ + GW ARI QHE DHL G LY+DK ++
Sbjct: 133 DGYQAVRRRWLDITARWTDENGKQHEERLHGWPARIFQHETDHLSGELYIDKAEIRSLTT 192
Query: 247 VENLD 251
ENL+
Sbjct: 193 YENLE 197
>gi|225351798|ref|ZP_03742821.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225158142|gb|EEG71425.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 218
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K +L IVQAG+PVL + + G++ + + +I+ M M APGVGLAA QIG+ L
Sbjct: 25 KEQLLPIVQAGEPVLRQQTAAYE-GQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED E F PF + I+NP + T F+EGCLS +GY+A
Sbjct: 84 ALAVVEDHVRDDDDDDPREAAEF---PFHV--IINPSYEPIGTETRSFYEGCLSFDGYQA 138
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ + GW ARI QHE DHL G LY+DK ++ ENL+
Sbjct: 139 VRKRWLDIIARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDKAEIRSLATNENLE 198
>gi|119026311|ref|YP_910156.1| peptide deformylase [Bifidobacterium adolescentis ATCC 15703]
gi|154488206|ref|ZP_02029323.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis
L2-32]
gi|158512525|sp|A1A2Z1.1|DEF_BIFAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|118765895|dbj|BAF40074.1| peptide deformylase 1 [Bifidobacterium adolescentis ATCC 15703]
gi|154083357|gb|EDN82402.1| peptide deformylase [Bifidobacterium adolescentis L2-32]
Length = 218
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K K+ IVQAG+PVL + D G++ + + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEKIMPIVQAGEPVLRQQTIAYD-GQLSRKTLDKLIDTMRTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED ++ + + PF I+NP + T F+EGCLS +GY+A
Sbjct: 84 ALAVVED---HVCEGDDGDPREAAEFPFH--AIINPSYEPIGTETRSFYEGCLSFDGYQA 138
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG + GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 139 VRKRWLDITARWQDEDGNKHEEHLHGWPARIFQHETDHLSGELYIDQAEIRSLTTNENLE 198
>gi|194902258|ref|XP_001980657.1| GG17276 [Drosophila erecta]
gi|190652360|gb|EDV49615.1| GG17276 [Drosophila erecta]
Length = 238
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 99/185 (53%), Gaps = 3/185 (1%)
Query: 63 WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
W L ++ LP Q GDP+L + A V + S I+ I++ MVKV+R
Sbjct: 33 WYQQLWATERTNLPPYNHFTQIGDPILRQQAALVPKEHLDSPEIKAIVERMVKVLRKFEC 92
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF 179
VG+AAPQIGV LRII +E + +A L +++NP L +
Sbjct: 93 VGIAAPQIGVSLRIIAMEFKGRVRKELPEVVYQARQMSELPLTVLINPVLTVTNYTKLKH 152
Query: 180 FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
EGC+SV GY A VER+ +++TGLD+ G ++ +GW ARI QHE DHL+G LY D M
Sbjct: 153 PEGCMSVRGYSAEVERFEGVKLTGLDQQGIQSELALSGWNARIAQHEMDHLEGKLYTDHM 212
Query: 240 VPKTF 244
TF
Sbjct: 213 DRSTF 217
>gi|418466229|ref|ZP_13037157.1| peptide deformylase [Streptomyces coelicoflavus ZG0656]
gi|371553142|gb|EHN80362.1| peptide deformylase [Streptomyces coelicoflavus ZG0656]
Length = 218
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + ++ + M +APGVGLAAPQ+GV L I V+E
Sbjct: 26 IVAAGDPVLRRSAEPFD-GQLEPALLARFVEALRLTMHAAPGVGLAAPQVGVGLGIAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D +E++ A R P +++NP + A FFEGCLSV G++AVV R+
Sbjct: 85 DPAPV-----PDEVRVARGRVPQPFRVLVNPSYEPVGAGRAAFFEGCLSVPGWQAVVARH 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
++ + LD G+ + TGW ARI+QHE DHL GTLY+D+
Sbjct: 140 AEVRLLALDEHGRTVDEVFTGWPARIVQHETDHLGGTLYLDR 181
>gi|290955665|ref|YP_003486847.1| polypeptide deformylase [Streptomyces scabiei 87.22]
gi|260645191|emb|CBG68277.1| polypeptide deformylase [Streptomyces scabiei 87.22]
Length = 218
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + + + M +APGVGLAAPQ+GV LRI V+E
Sbjct: 29 IVAAGDPVLRRTAEPFD-GQLDPALLARFVAALRATMHAAPGVGLAAPQVGVSLRIAVIE 87
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ A R P +++NP + FFEGCLSV G++AVV R+
Sbjct: 88 DPAPV-----PEEVRLARGRVPQPFRVLVNPAYEAVGPFRDAFFEGCLSVPGWQAVVARH 142
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ + LD G+ + + +GW ARI+QHE DHL+GTLY+D
Sbjct: 143 ARVRLRALDERGRAVDEEFSGWPARIVQHETDHLNGTLYLD 183
>gi|195499829|ref|XP_002097113.1| GE24678 [Drosophila yakuba]
gi|194183214|gb|EDW96825.1| GE24678 [Drosophila yakuba]
Length = 238
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 101/186 (54%), Gaps = 5/186 (2%)
Query: 63 WLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
W L ++ LP Q GDPVL + A V + S ++ I++ MVKV+R
Sbjct: 33 WYQQLWTTERTNLPPYNHFTQIGDPVLRQQAAVVPKEHLDSPELKAIVERMVKVLRKFDC 92
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI-KAFDRRPFDLLMILNPKLKKKSDRTAL 178
VG+AAPQIGV LRII +E K I + E + + L + +NP L +
Sbjct: 93 VGIAAPQIGVSLRIIAME-FKGRIRKELPEAVYQTRQMSELPLTVFINPVLTVTNYTKLK 151
Query: 179 FFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
EGC+SV GY A VER+ +++TGLD+ G ++ +GW ARI QHE DHL+G LY D
Sbjct: 152 HPEGCMSVRGYSAEVERFEGVKLTGLDQQGNQSELALSGWNARIAQHEMDHLEGKLYTDH 211
Query: 239 MVPKTF 244
M TF
Sbjct: 212 MDRSTF 217
>gi|194741016|ref|XP_001952985.1| GF17444 [Drosophila ananassae]
gi|190626044|gb|EDV41568.1| GF17444 [Drosophila ananassae]
Length = 238
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 110/202 (54%), Gaps = 7/202 (3%)
Query: 49 HRKARTTSAISKA--GWLLGLGQNKKAKLP---EIVQAGDPVLHEPAREVDPGEIGSERI 103
HR T+SA +++ W L ++ LP Q GDPVL + A V I S +
Sbjct: 17 HRTFATSSASAQSFRKWYQQLWAPERTNLPPYSHFTQIGDPVLRQKAAPVPQEHILSPEV 76
Query: 104 QNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI-KAFDRRPFDLL 162
+ I++ MV+V+R VG+AAPQIGV LRII +E K I + E + +A L
Sbjct: 77 EAIVEKMVRVLRKYDCVGIAAPQIGVSLRIIAME-FKGSIRKELPEAVYQARQMTELPLT 135
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
+ +NP L + EGC+SV G+ A VER+ + ++G + +G +++ +GW ARI
Sbjct: 136 VFINPVLTVTNYTKLKHPEGCMSVRGFSADVERFEGVSISGSNGNGVQNELELSGWNARI 195
Query: 223 LQHECDHLDGTLYVDKMVPKTF 244
QHE DHLDG LY D M TF
Sbjct: 196 AQHEMDHLDGKLYTDHMDRSTF 217
>gi|456386480|gb|EMF52016.1| polypeptide deformylase [Streptomyces bottropensis ATCC 25435]
Length = 218
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + + + M +APGVGLAAPQ+GV LR+ V+E
Sbjct: 29 IVAAGDPVLRRTAEPFD-GQLDPGLLARFVAALRATMHAAPGVGLAAPQVGVSLRLAVIE 87
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE++ A R P +++NP + FFEGCLSV G++AVV R+
Sbjct: 88 DPAPV-----PEEVRLARGRVPQPFRVLVNPAYEAVGPYRDAFFEGCLSVPGWQAVVARH 142
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ + LD G+ + + +GW ARI+QHE DHL+GTLY+D
Sbjct: 143 AKVRLRALDERGRAVDEEFSGWPARIVQHETDHLNGTLYLD 183
>gi|332024895|gb|EGI65083.1| Peptide deformylase, mitochondrial [Acromyrmex echinatior]
Length = 240
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 5/184 (2%)
Query: 64 LLGLGQNKKAKLP--EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVG 121
LLG+ N+ LP + Q GDPVL A +++P I Q +I ++ VMR+ G
Sbjct: 37 LLGVNSNE---LPYAHVCQVGDPVLRGHAMKIEPEVIRMADFQKVITHLINVMRAYKSYG 93
Query: 122 LAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFE 181
++ PQIG+P +I +E T+E + + K + + + +NP+LK +E
Sbjct: 94 ISGPQIGLPWQIFAIECTEEIMEGVEETVKKTHEMNIIPMTIFINPELKVMDYTPITLYE 153
Query: 182 GCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
GC S+ GY A V R ++E+ L+ + A GW ARI QHE DHL G LY++KM
Sbjct: 154 GCESIRGYSAAVPRAYEVEIKALNASAEQFTWRACGWSARIAQHEYDHLQGKLYIEKMDI 213
Query: 242 KTFR 245
+TF+
Sbjct: 214 RTFQ 217
>gi|380016361|ref|XP_003692155.1| PREDICTED: peptide deformylase, mitochondrial-like [Apis florea]
Length = 232
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 96/171 (56%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I Q G+PVL + +D I ++ Q I+D + ++++ VGLAAPQIG+P ++ +E
Sbjct: 50 ICQVGNPVLRQKTSCIDEKIIQTQEFQKILDHLYELLKKYDTVGLAAPQIGLPWQLFAIE 109
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
T+E + + K + + L +NPK+K + + FE C S++ Y A V R
Sbjct: 110 VTEETVKHIHPYIRKCYGITTYPLTYFINPKMKIINPEEIVHFETCASIHCYYAEVPRPK 169
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVE 248
++E+ L++ G+ + A GW ARI+ HE DHL G LY D+M P +F E
Sbjct: 170 EVEIEALNKFGESFSMKAEGWLARIVHHEMDHLKGHLYTDRMFPFSFNYGE 220
>gi|229817289|ref|ZP_04447571.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785078|gb|EEP21192.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 217
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 70 NKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
K+ LP IVQAG+PVL + G++ + +ID M M APGVGLAA QIG+
Sbjct: 24 GKEHILP-IVQAGEPVLRQQTVAY-TGQLSKHTLAKLIDAMRTTMLEAPGVGLAATQIGL 81
Query: 130 PLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
L + VLED +++ + PF + I+NP T F+EGCLS +GY
Sbjct: 82 GLALAVLEDHIR----DDEDDPREIGELPFHV--IINPVYAPVGTETRSFYEGCLSFDGY 135
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+AV +R+LDI+ D +G K GW ARI QHE DHL G LY+DK ++ EN
Sbjct: 136 QAVRKRWLDIDAEWDDENGMHHKERMHGWPARIFQHETDHLSGELYIDKAEIRSLTTYEN 195
Query: 250 LD 251
L+
Sbjct: 196 LE 197
>gi|449668276|ref|XP_002163626.2| PREDICTED: peptide deformylase, mitochondrial-like [Hydra
magnipapillata]
Length = 197
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 99/162 (61%), Gaps = 4/162 (2%)
Query: 80 QAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
Q GDPVL + AREV I ++ +++I M+ +MRS G G+AAPQ+GV L++I +E T
Sbjct: 25 QNGDPVLRKVAREVPLEYINTQDFKDLITKMILIMRSNKGQGIAAPQVGVDLQVIAIEFT 84
Query: 140 KEYISYQSKE----EIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ + +K+ E++ R F L + +NPKLK + T F EGCLS+ G VV+R
Sbjct: 85 EHDLEMATKQYGKNEVEKRQMRTFPLHIFINPKLKIINYETTCFEEGCLSILGTVGVVQR 144
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
Y ++++ ++ G + ++ GW AR++QHE HL G L VD
Sbjct: 145 YREVQLEFVNEKGVNVLMNFDGWLARMVQHEMHHLKGFLIVD 186
>gi|392960503|ref|ZP_10325971.1| Peptide deformylase [Pelosinus fermentans DSM 17108]
gi|421054740|ref|ZP_15517705.1| peptide deformylase [Pelosinus fermentans B4]
gi|421071603|ref|ZP_15532719.1| Peptide deformylase [Pelosinus fermentans A11]
gi|392440421|gb|EIW18101.1| peptide deformylase [Pelosinus fermentans B4]
gi|392446868|gb|EIW24139.1| Peptide deformylase [Pelosinus fermentans A11]
gi|392455080|gb|EIW31887.1| Peptide deformylase [Pelosinus fermentans DSM 17108]
Length = 169
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 97/165 (58%), Gaps = 28/165 (16%)
Query: 77 EIVQAGDPVLHE---PAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
EI +AGD VL E P VD ++I+ +IDDM + M +A GVGLAAPQ+GV LR+
Sbjct: 23 EIRKAGDKVLKEIAEPVARVD------KKIRKLIDDMAQTMYNADGVGLAAPQVGVSLRV 76
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
IVL+ E L+ ++NP + KKS+ L EGCLSV G V
Sbjct: 77 IVLDVDDE-------------------LIELINPIIIKKSEDCELGNEGCLSVPGVFGEV 117
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
ER+ ++ VTGL+R G+ I + TG AR LQHE DHLDG L+++K
Sbjct: 118 ERFSEVTVTGLNRFGKNITITGTGLLARALQHEIDHLDGILFIEK 162
>gi|381397323|ref|ZP_09922735.1| Peptide deformylase [Microbacterium laevaniformans OR221]
gi|380775308|gb|EIC08600.1| Peptide deformylase [Microbacterium laevaniformans OR221]
Length = 180
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 22/174 (12%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH PA DP ++ I+ ++ DM + M +APGVGLAAPQ+GV LRI
Sbjct: 2 GDPVLHSPA---DPVSEITDEIRTLVADMFETMDAAPGVGLAAPQVGVGLRIYTY----- 53
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVERY 196
SYQ D +P+ +ILNP+L + EGCLS G R + R
Sbjct: 54 --SYQDD------DGQPW-RGVILNPELWMRPSVPGAPDPDDESEGCLSFPGERFALRRS 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
++ VTG+D DG+PI++ GW+ARI+QHE DHLDG LYVD++ ++ V+ +
Sbjct: 105 DEVLVTGIDLDGEPIRIQVDGWRARIMQHEFDHLDGILYVDRLDDGDWKTVQKI 158
>gi|421060990|ref|ZP_15523385.1| Peptide deformylase [Pelosinus fermentans B3]
gi|421063837|ref|ZP_15525777.1| Peptide deformylase [Pelosinus fermentans A12]
gi|392452588|gb|EIW29512.1| Peptide deformylase [Pelosinus fermentans B3]
gi|392462203|gb|EIW38310.1| Peptide deformylase [Pelosinus fermentans A12]
Length = 165
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 96/165 (58%), Gaps = 28/165 (16%)
Query: 77 EIVQAGDPVLHE---PAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
EI +AGD VL E P VD ++I+ +IDDM + M +A GVGLAAPQ+GV LR+
Sbjct: 19 EIRKAGDKVLKEIAEPVARVD------KKIRKLIDDMAQTMYNADGVGLAAPQVGVSLRV 72
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
IVL+ E I ++NP + KKS+ L EGCLSV G V
Sbjct: 73 IVLDVDDELIE-------------------LINPIIIKKSEDCELGNEGCLSVPGVFGEV 113
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
ER+ ++ VTGL+R G+ I + TG AR LQHE DHLDG L+++K
Sbjct: 114 ERFSEVTVTGLNRFGKNITITGTGLLARALQHEIDHLDGILFIEK 158
>gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
StLB037]
gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
StLB037]
Length = 188
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 16/171 (9%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH PA VD EI +E ++ ++ DM + M +APGVGLAAPQ+GV LRI
Sbjct: 10 GDPVLHAPAARVD--EI-TEEVRTLVADMFETMDAAPGVGLAAPQVGVGLRIFTY----- 61
Query: 142 YISYQSKEEI--KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+Y+ E + + P + L P D + EGCLS G R + R
Sbjct: 62 --TYEDDEGLPWRGVVINPELWIRPLEPGYPDPDDES----EGCLSFPGERFPLRRSDAA 115
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+TG+D DG+P++++ TGW+ARILQHE DHLDG LYVD++ + R+V +
Sbjct: 116 LLTGVDLDGRPVRIEVTGWRARILQHEFDHLDGILYVDRLDDEDSRVVAKI 166
>gi|162457307|ref|YP_001619674.1| peptide deformylase [Sorangium cellulosum So ce56]
gi|161167889|emb|CAN99194.1| peptide deformylase [Sorangium cellulosum So ce56]
Length = 191
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 97/165 (58%), Gaps = 9/165 (5%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I G+PVL + AREV E+ S +Q IDD+V+ MR A G G+AA Q+ VP+RI
Sbjct: 3 LLKIAHIGNPVLRQRAREVTEEELSSPAMQAFIDDLVETMRDANGAGIAATQVHVPVRIF 62
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E ++ Y K I L +++NP ++ + T +EGCLSV R VV+
Sbjct: 63 AVE-VQDNPRYPYKPNIP--------LTVVVNPVIEPLTQETFENYEGCLSVPNLRGVVD 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R +I +TGLDR+G+PI G A QHE DH+DG L+VD++
Sbjct: 114 RTTEIRLTGLDREGRPIDRVVRGLSAGTFQHEKDHVDGVLFVDRV 158
>gi|91092264|ref|XP_967363.1| PREDICTED: similar to N-formylmethionylaminoacyl-tRNA deformylase,
putative [Tribolium castaneum]
gi|270001218|gb|EEZ97665.1| hypothetical protein TcasGA2_TC016210 [Tribolium castaneum]
Length = 223
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 2/180 (1%)
Query: 62 GWLLGLGQNKKAKLP--EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPG 119
W GL + K + P +VQ GDP L + + I I+ +I+ M VM++
Sbjct: 17 SWYSGLVKAKPPEAPFKHVVQIGDPTLRTVSDVIPRDLIKLPEIKFLINRMKNVMKNHNS 76
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF 179
VGL+APQ+GVPL++ ++E ++++ S +E K + + +++NP++K F
Sbjct: 77 VGLSAPQVGVPLQLFLVECNAKHLNEYSPQEQKVKEMKVVPFKVVINPQIKITDYTKLTF 136
Query: 180 FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
E C SV G+ A V RY +++ D + Q +++ TGW ARI+QHE DHL+G +Y D M
Sbjct: 137 VESCASVKGFHAEVPRYKSLKLEAFDEENQKFEMELTGWPARIVQHEVDHLNGKIYTDIM 196
>gi|322784370|gb|EFZ11341.1| hypothetical protein SINV_03231 [Solenopsis invicta]
Length = 239
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 5/183 (2%)
Query: 64 LLGLGQNKKAKLP--EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVG 121
L+G+ N+ LP + Q GDPVL +++P I Q +I ++ VMR+ G
Sbjct: 37 LVGMNANE---LPYEHVCQVGDPVLRGRTMKIEPEVIRMADFQKVIKRLINVMRAYDAYG 93
Query: 122 LAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFE 181
L+ PQIG+P +I +E T++ + + KA + + + +NP+LK +E
Sbjct: 94 LSGPQIGLPWQIFAIECTEKTMKGVEESVRKAHEMNVVPMTIFINPELKVIDYTPITLYE 153
Query: 182 GCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
C S+ GY A V R ++E+T L+ + A GW ARI QHE DHL G LY++KM
Sbjct: 154 ECASIQGYSAAVPRAYEVEITALNASAEQFTWRARGWSARIAQHEYDHLQGKLYIEKMDV 213
Query: 242 KTF 244
+TF
Sbjct: 214 RTF 216
>gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1]
gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1]
Length = 171
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 95/161 (59%), Gaps = 12/161 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV DPVL A++V + + +Q +IDDM++ MR+APGVGLAAPQ+GV R+IV+E
Sbjct: 6 IVTVPDPVLRRKAKKVTTFD---KDLQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIVVE 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ ++ P L ++NP++ + S EGCLS+ VER+
Sbjct: 63 YGEGEEEDENV---------PKKLYAVVNPEIVEASPERVTGVEGCLSIPRMMGEVERHE 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I V GL+R G+P+K +GW ARI QHE DHL+G LY D+
Sbjct: 114 RIVVKGLNRYGKPVKYKLSGWTARIFQHEIDHLEGILYTDR 154
>gi|407644845|ref|YP_006808604.1| peptide deformylase [Nocardia brasiliensis ATCC 700358]
gi|407307729|gb|AFU01630.1| peptide deformylase [Nocardia brasiliensis ATCC 700358]
Length = 208
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL PA V G+I + ++ + + M+ M + GVGLAAPQIG+PL+I V+ DT E
Sbjct: 25 GDPVLRRPADPVT-GQIDTTVLKELSELMLATMHATRGVGLAAPQIGIPLQIAVIGDTAE 83
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E A R P I+NP D + F+EGCLS+ GY+AVV R ++
Sbjct: 84 V----PAEIATARKRIPVPDFTIINPSYTAAGDPVS-FYEGCLSMPGYQAVVPRPETVQA 138
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
D DG TGW ARI QHE DHL GT+Y+DK + ++
Sbjct: 139 EYDDLDGVRHVERITGWPARIFQHETDHLAGTIYIDKALTRSL 181
>gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
Marseille]
gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
Marseille]
Length = 178
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V E G+ + +I+DM M +A G GLAAPQIGV LR+++
Sbjct: 5 EILKMGDPRLLRVAEPVK--EFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLVI- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y K+ + D P +++NPKL+ S +EGCLSV G R VV R+
Sbjct: 62 --------YGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRF 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D+ G I DA G+ AR++QHECDHLDG LY
Sbjct: 114 SALHYDGFDQYGNVISRDADGFHARVVQHECDHLDGILY 152
>gi|385681866|ref|ZP_10055794.1| polypeptide deformylase [Amycolatopsis sp. ATCC 39116]
Length = 205
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH+P +V E G + Q ++ DM MR+A GVGLAA QIGVPLR+ V
Sbjct: 28 ITVVGNPVLHQPCADVT--EFGDDLAQ-LVSDMFVSMRTASGVGLAANQIGVPLRVFV-- 82
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
Y E + + ++NP ++ D T EGCLSV G RAVVER
Sbjct: 83 -------YLCPESYARSEGELWHAGHVVNPVIEVAGDETGAHPEGCLSVPGARAVVERPA 135
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
+ V G D G PI V AR QHE DHL+G LY+D + P+
Sbjct: 136 QVTVRGFDLGGNPIAVPGRDLLARCFQHETDHLNGRLYIDHLTPE 180
>gi|82523804|emb|CAI78547.1| polypeptide deformylase [uncultured Chloroflexi bacterium]
Length = 176
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 97/161 (60%), Gaps = 8/161 (4%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV DPVL AR+V + G E +Q +IDDMV+ MRSAPGVGLAAPQ+ ++I +
Sbjct: 5 EIVFTPDPVLRRKARKVT--DFGPE-LQTLIDDMVETMRSAPGVGLAAPQVAESWQVITI 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
S +S+E + ++ P L ++NP++ + S+ T + EGCLSV G VER
Sbjct: 62 -----EYSEESEEGEEGEEKVPPKLYTLVNPQITRASNETIVGTEGCLSVPGIVGEVERN 116
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V +R GQP+ + A W ARI QHE DHL+G L+ D
Sbjct: 117 EAVTVKAQNRRGQPVTIKAQDWLARIFQHEIDHLEGVLFTD 157
>gi|423349340|ref|ZP_17326996.1| hypothetical protein HMPREF9156_00534 [Scardovia wiggsiae F0424]
gi|393702888|gb|EJD65090.1| hypothetical protein HMPREF9156_00534 [Scardovia wiggsiae F0424]
Length = 227
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQ G+PVL G++ + + M K M APGVGLA PQIG+ L + V+E
Sbjct: 31 IVQMGEPVLRLKTVRY-TGQLRQSTLDRLKKCMRKTMLDAPGVGLAGPQIGLGLSLAVIE 89
Query: 138 D-TKEYISYQSKEEIKAFDRR-----PFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
D + S+ +A D R PF M++NP + TA F+EGCLS +GY+A
Sbjct: 90 DHARPQADNSSEYSDEARDPRGISDVPF--YMVINPSYEPLGSETASFYEGCLSFDGYQA 147
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+L+I+ D + + D W ARI QHE DHL+G +Y+D+ ++ +NLD
Sbjct: 148 VRKRWLNIKAHWFDENNVEHEADLHNWHARIFQHETDHLNGEVYIDRAEIRSMSSYDNLD 207
>gi|410480018|ref|YP_006767655.1| N-formylmethionyl-tRNA deformylase [Leptospirillum ferriphilum
ML-04]
gi|424868366|ref|ZP_18292113.1| Peptide deformylase [Leptospirillum sp. Group II 'C75']
gi|124516548|gb|EAY58056.1| Peptide deformylase [Leptospirillum rubarum]
gi|206603377|gb|EDZ39857.1| Peptide deformylase [Leptospirillum sp. Group II '5-way CG']
gi|387221335|gb|EIJ75909.1| Peptide deformylase [Leptospirillum sp. Group II 'C75']
gi|406775270|gb|AFS54695.1| N-formylmethionyl-tRNA deformylase [Leptospirillum ferriphilum
ML-04]
Length = 184
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 9/165 (5%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I + G+P+L + A + P EI ++ Q +DDM++ MR + G+GLAAPQ+ V +++
Sbjct: 3 LLKIAKMGNPILRKIAEPISPKEIETDEFQTFVDDMIETMRDSDGLGLAAPQVHVSKQVV 62
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V+E S E + D P LL+++NP K S T +EGCLSV+ R V
Sbjct: 63 VIE---------SMENDRYPDAPPIPLLVLINPVFKYMSKETRTGWEGCLSVDNLRGKVT 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R +++ LDR G I ++ + A +LQHE DHL G L++D+M
Sbjct: 114 RSRAVKMEALDRHGNTITLEWEDFPAVVLQHETDHLRGHLFLDRM 158
>gi|256831860|ref|YP_003160587.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
gi|256685391|gb|ACV08284.1| Peptide deformylase [Jonesia denitrificans DSM 20603]
Length = 245
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V AG PVL A + G++G++ ID M M APGVGLAAPQ+GV L + V+
Sbjct: 52 LVHAGHPVLRREAGRYE-GQLGAD-FMAFIDAMNTTMVVAPGVGLAAPQVGVSLAVAVMR 109
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D + ++ +R F + +++NP + D FFEGCLSV GY+AVV R+
Sbjct: 110 DPG------AADDADPRERVAFPMRVLVNPVYEPVGDEKVSFFEGCLSVPGYQAVVARWR 163
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+ V G D G P+ TGW ARI QHE DHL G LYVD+ ++ +ENL
Sbjct: 164 RVRVMGWDETGAPVDEVLTGWPARIAQHEIDHLRGVLYVDRAHLRSLSTMENL 216
>gi|427414323|ref|ZP_18904513.1| peptide deformylase [Veillonella ratti ACS-216-V-Col6b]
gi|425714699|gb|EKU77702.1| peptide deformylase [Veillonella ratti ACS-216-V-Col6b]
Length = 175
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 24/170 (14%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV+AG PVL + A+ P E +++++ ++DDM + MR + GVGLAAPQ+ V RIIV+
Sbjct: 5 EIVKAGHPVLKQVAQ---PVEFVNKKMRQLLDDMAETMRVSDGVGLAAPQVNVSQRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D L +NP + K +D + EGCLSV GY V+RY
Sbjct: 62 DDGT-------------------GLQEFINPVIVK-ADGEQIGLEGCLSVPGYYGDVKRY 101
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRI 246
DIEV +DR + K+ A G+ ARI+QHE DHLDG L+++K V +R+
Sbjct: 102 QDIEVHYIDRHNKKKKLKAEGFLARIIQHEIDHLDGILFIEK-VEAAYRV 150
>gi|338813381|ref|ZP_08625510.1| peptide deformylase [Acetonema longum DSM 6540]
gi|337274740|gb|EGO63248.1| peptide deformylase [Acetonema longum DSM 6540]
Length = 152
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 23/162 (14%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI +AGDPVL E A+ V + +++ ++D+M + M A GVGLAAPQ+G+ LRI+V+
Sbjct: 5 EIKKAGDPVLKERAQAVTKID---RKVKELLDNMAQTMYGAEGVGLAAPQVGILLRIVVI 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D E L+ ++NP++ + SD T + EGCLS+ G VERY
Sbjct: 62 -DAGE------------------GLVELINPEIVE-SDGTQVASEGCLSIPGVYGDVERY 101
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
D+ V GL+R G+ I++ A G AR LQHE DHL+G L++++
Sbjct: 102 ADVTVEGLNRSGKKIRIAANGLLARALQHEIDHLNGILFIER 143
>gi|163792491|ref|ZP_02186468.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
gi|159182196|gb|EDP66705.1| Formylmethionine deformylase [alpha proteobacterium BAL199]
Length = 183
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 78 IVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
IV+ GDPVL A V DP + I+ +IDDMV + A G+GLAAPQIG+ R+++
Sbjct: 6 IVRVGDPVLRSVAALVPDPT---APAIRQLIDDMVASLEEAGGIGLAAPQIGILQRVLIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + D P L ++NP L+ DR AL +EGCLS+ G R V R+
Sbjct: 63 WVPDARATNEP-------DDGPCPLTALINPVLEPLDDRMALGWEGCLSIPGLRGEVPRH 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
L + VT +G+P + G +AR+LQHE DHLDG LY+D+M
Sbjct: 116 LRMRVTATTPEGEPFEAIVAGTRARVLQHEVDHLDGILYLDRMT 159
>gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1]
gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1]
Length = 263
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 117/201 (58%), Gaps = 13/201 (6%)
Query: 45 TFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQ 104
++ R ++ I KAG +L +++ + +V+ + L AR V + + ++
Sbjct: 45 SYPTERLNSYSTDILKAGDILA-NRDRIMAIRPVVKFPEASLKSKARPVTEFD---DSLR 100
Query: 105 NIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL------EDTKEYISYQSKEEIKAFDRRP 158
++ DM+ M APGVGLAAPQ+GVPL+++V+ + + Q A +R P
Sbjct: 101 ELVADMIATMHDAPGVGLAAPQVGVPLQVVVILGRVARPELADGEDEQQPPAAVAEERNP 160
Query: 159 FDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGW 218
L+++NP+L + + EGCLSV Y + V+RY + VT LD DGQP++++A G+
Sbjct: 161 S--LVLINPRLVEGQGEE-VDEEGCLSVRDYSSKVKRYARVRVTALDLDGQPLEIEAEGF 217
Query: 219 QARILQHECDHLDGTLYVDKM 239
AR+LQHE DHL+GTL++D++
Sbjct: 218 FARVLQHEIDHLEGTLFIDRL 238
>gi|429334991|ref|ZP_19215638.1| peptide deformylase [Pseudomonas putida CSV86]
gi|428760398|gb|EKX82665.1| peptide deformylase [Pseudomonas putida CSV86]
Length = 179
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V GS +Q +IDDM + MR GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPEHLFGSAELQQLIDDMFETMRHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E D P ++LNP + +EGCLSV G R VV RY
Sbjct: 64 -------GFERSERYP--DAEPVPQTILLNPLITPMGTELEEGWEGCLSVPGLRGVVSRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D GQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 KSIFYEGVDPHGQPIRRTAEGFHARVVQHECDHLIGRLYPSRI 157
>gi|342214379|ref|ZP_08707077.1| peptide deformylase [Veillonella sp. oral taxon 780 str. F0422]
gi|341593928|gb|EGS36740.1| peptide deformylase [Veillonella sp. oral taxon 780 str. F0422]
Length = 158
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 98/164 (59%), Gaps = 23/164 (14%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+++ G PVL + A +P E +++I+ ++DDM + M GVGLAAPQ+ V RIIVL
Sbjct: 5 EVMKTGHPVLKQIA---EPVEFVNKKIRQLLDDMAETMYKTDGVGLAAPQVNVSKRIIVL 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D L+ ++NP++ KK + + + EGCLSV VERY
Sbjct: 62 DDGN-------------------GLIEVINPEIVKK-EGSQVGLEGCLSVPELFGDVERY 101
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
IEV G++R+ + IK+ A G+ ARI QHE DHL+G L+V+K+V
Sbjct: 102 DKIEVHGINRNNKKIKIKAEGFLARIFQHEIDHLNGILFVEKLV 145
>gi|421074231|ref|ZP_15535271.1| Peptide deformylase [Pelosinus fermentans JBW45]
gi|392527737|gb|EIW50823.1| Peptide deformylase [Pelosinus fermentans JBW45]
Length = 168
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 29/165 (17%)
Query: 77 EIVQAGDPVLHE---PAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
EI +AGD VL E P VD +I+ +IDDM + M +A GVGLAAPQ+GV LR+
Sbjct: 23 EIRKAGDKVLKEIAEPVARVD------RKIRKLIDDMAQTMYNADGVGLAAPQVGVSLRV 76
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
IVL+ E L+ ++NP + K S+ L EGCLSV G V
Sbjct: 77 IVLDVDDE-------------------LIELINPIIIK-SEGCELGNEGCLSVPGVFGEV 116
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
ER+ ++ VTGL+R G+ I + TG AR LQHE DHLDG L+++K
Sbjct: 117 ERFSEVTVTGLNRFGKNITITGTGLLARALQHEIDHLDGILFIEK 161
>gi|119899899|ref|YP_935112.1| peptide deformylase [Azoarcus sp. BH72]
gi|119672312|emb|CAL96226.1| probable peptide deformylase [Azoarcus sp. BH72]
Length = 177
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L AR V G++ ++ I+ DMV+ M +A GVGLAAPQ+G+ LR+++
Sbjct: 4 DILRMGDPRLMRAARPV--CAFGTDELRRIVADMVETMHAAGGVGLAAPQVGIDLRLVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E D P ++ NP L SD +EGCLSV G R V R+
Sbjct: 62 -------GFERSERYP--DAPPVPFTVLANPVLTPLSDELEEGWEGCLSVPGLRGWVPRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D DG+P++ + G+ AR++QHECDHLDG LY
Sbjct: 113 RHLLYRGADIDGKPLEREVEGFHARVVQHECDHLDGILY 151
>gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1]
gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1]
Length = 259
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 92/143 (64%), Gaps = 9/143 (6%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL------EDTKEYISYQSKEEIKAFDR 156
++ ++ DM+ M APGVGLAAPQ+GVPL+++V+ + + Q A +R
Sbjct: 99 LRELVADMIATMHDAPGVGLAAPQVGVPLQVVVILGRVARPELADGEDEQQPPAAVAEER 158
Query: 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDAT 216
P L+++NP+L + + EGCLSV Y + V+RY + VT LD DGQP++++A
Sbjct: 159 NPS--LVLINPRLVEGQGEE-VDEEGCLSVRDYSSKVKRYTRVRVTALDLDGQPLEIEAE 215
Query: 217 GWQARILQHECDHLDGTLYVDKM 239
G+ AR+LQHE DHL+GTL++D++
Sbjct: 216 GFFARVLQHEIDHLEGTLFIDRL 238
>gi|29833668|ref|NP_828302.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
gi|39931074|sp|Q826Q0.1|DEF2_STRAW RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
Length = 186
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P EV + G E + +++DM M +A GVGLAA QIGVPLR+ V + +
Sbjct: 20 GDPVLHAPCEEVT--DHGPE-LARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ ++NP+L + EGCLS+ G A ERY V
Sbjct: 77 -------EDVRHVGH-------VVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G DG+P++V TGW AR LQHECDHLDG +YVD++
Sbjct: 123 EGFTTDGEPVRVLGTGWFARCLQHECDHLDGGVYVDRV 160
>gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1]
gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1]
Length = 259
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 93/145 (64%), Gaps = 9/145 (6%)
Query: 101 ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL------EDTKEYISYQSKEEIKAF 154
+ ++ ++ DM+ M APGVGLAAPQ+GVPL+++V+ + + Q A
Sbjct: 97 DSLRALVADMIATMHDAPGVGLAAPQVGVPLQVVVILGRVARPELADGEDEQQPPAAVAE 156
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+R P L+++NP+L + + EGCLSV Y + V+RY + VT LD DGQP++++
Sbjct: 157 ERNPS--LVLINPRLVEGQGEE-VDEEGCLSVRDYSSKVKRYARVRVTALDLDGQPLEIE 213
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G+ AR+LQHE DHL+GTL++D++
Sbjct: 214 AEGFFARVLQHEIDHLEGTLFIDRL 238
>gi|149038103|gb|EDL92463.1| component of oligomeric golgi complex 8 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 141
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 79/131 (60%)
Query: 114 MRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKS 173
MR VGL+APQ+GVPL+++VLE S + PF L +++NP L+
Sbjct: 1 MRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLD 60
Query: 174 DRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGT 233
R F EGC SV G+ A V R+ ++++GLD G+P+ A+GW ARI+QHE DHL G
Sbjct: 61 SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGC 120
Query: 234 LYVDKMVPKTF 244
L++DKM TF
Sbjct: 121 LFIDKMDSGTF 131
>gi|149919087|ref|ZP_01907571.1| putative polypeptide deformylase protein [Plesiocystis pacifica
SIR-1]
gi|149820017|gb|EDM79438.1| putative polypeptide deformylase protein [Plesiocystis pacifica
SIR-1]
Length = 192
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 92/171 (53%), Gaps = 17/171 (9%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A + I + G PVL + AREV P E+ + IQ IDD+V MR A G GLAA Q+ P++
Sbjct: 2 ATIRAIARVGAPVLRQVAREVSPEELATPEIQGFIDDLVATMRHANGAGLAANQVFEPIQ 61
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFD----LLMILNPKLKKKSDRTALFFEGCLSVNG 188
I LE +++ R P+ L +++NPKL D + +EGCLSV
Sbjct: 62 ICALE-------------VQSNPRYPYKPNIPLTVLVNPKLTPLGDDSFANYEGCLSVPD 108
Query: 189 YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R VV R+ + V LDR+G + + G A QHE DHL G L++D++
Sbjct: 109 LRGVVRRHARLRVQALDREGNSLDFETAGVTAGTYQHEVDHLRGKLFLDRV 159
>gi|393777005|ref|ZP_10365299.1| peptide deformylase [Ralstonia sp. PBA]
gi|392716362|gb|EIZ03942.1| peptide deformylase [Ralstonia sp. PBA]
Length = 176
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 25/166 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L +PA+ V+ + + +++DM M +A G GLAAPQIGV L++++
Sbjct: 4 EILRMGDPRLLQPAKPVE--RFNTPELHALVEDMFDTMEAAKGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
FDR P +++NP L +D +EGCLSV G
Sbjct: 62 ----------------GFDRNPRYPEAPAVPKTVLINPALTAINDEIEDGWEGCLSVPGM 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R VV RY+ + +G D+ G PI A G+ AR++QHECDHL G LY
Sbjct: 106 RGVVPRYVHLHYSGFDQYGHPIDRIAEGFHARVVQHECDHLQGILY 151
>gi|294786544|ref|ZP_06751798.1| peptide deformylase [Parascardovia denticolens F0305]
gi|420237460|ref|ZP_14741928.1| peptide deformylase [Parascardovia denticolens IPLA 20019]
gi|294485377|gb|EFG33011.1| peptide deformylase [Parascardovia denticolens F0305]
gi|391879303|gb|EIT87812.1| peptide deformylase [Parascardovia denticolens IPLA 20019]
Length = 234
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQ G+PVL G++ + + + M K M +APGVGLA PQIG+ L I V+E
Sbjct: 31 IVQMGEPVLRLKTVPYQ-GQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVVE 89
Query: 138 DTKEYISYQSKEEI-------------KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
D ++ ++ + PF MI+NP + D TA F+EGCL
Sbjct: 90 DHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFH--MIINPSYEPLDDETASFYEGCL 147
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
S +GY+AV +R+L+I D G + W ARI QHE DHL G +Y+DK ++
Sbjct: 148 SFDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDKAELRSL 207
Query: 245 RIVENLD 251
+NLD
Sbjct: 208 SSYDNLD 214
>gi|340617205|ref|YP_004735658.1| formylmethionine deformylase [Zobellia galactanivorans]
gi|339732002|emb|CAZ95270.1| Formylmethionine deformylase [Zobellia galactanivorans]
Length = 176
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 97/163 (59%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+++ G+P+L + + VD EI S+ Q +DD++ MR+ GVG+AAPQ+GV R+ +
Sbjct: 5 EVIKMGNPLLRKVSEAVDIDEIKSDDFQGFVDDLIATMRNKSGVGIAAPQVGVLKRVFTM 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E +K+ + D++ F L +++NP+++ SD +EGCLS+ G R ++RY
Sbjct: 65 E---------AKKNERYPDKKSFPLSVVINPRIETLSDEMVDSWEGCLSIPGIRGRLKRY 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++++G D G + + A + QHE DHL+G L +D+M
Sbjct: 116 KTVKLSGYDIKGNRFEKVLDDFSAIVAQHELDHLNGVLLIDRM 158
>gi|398848204|ref|ZP_10605032.1| peptide deformylase [Pseudomonas sp. GM84]
gi|398249418|gb|EJN34806.1| peptide deformylase [Pseudomonas sp. GM84]
Length = 178
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 90/163 (55%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V IGS +Q +IDDM + MR GVGLAAPQIG+ L++++
Sbjct: 4 DILKMGDERLLRVAPPVPDHLIGSNELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E D P +++NP + S +EGCLSV G R VV RY
Sbjct: 64 -------GFERSERYP--DAEPVPQTILINPVITPLSTEIEDGWEGCLSVPGLRGVVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D GQPI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHISYAGIDPQGQPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|315226122|ref|ZP_07867910.1| peptide deformylase [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|315120254|gb|EFT83386.1| peptide deformylase [Parascardovia denticolens DSM 10105 = JCM
12538]
Length = 244
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 96/187 (51%), Gaps = 16/187 (8%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQ G+PVL G++ + + + M K M +APGVGLA PQIG+ L I V+E
Sbjct: 41 IVQMGEPVLRLKTVPYQ-GQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVVE 99
Query: 138 DTKEYISYQSKEEI-------------KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
D ++ ++ + PF MI+NP + D TA F+EGCL
Sbjct: 100 DHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFH--MIINPSYEPLDDETASFYEGCL 157
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
S +GY+AV +R+L+I D G + W ARI QHE DHL G +Y+DK ++
Sbjct: 158 SFDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDKAELRSL 217
Query: 245 RIVENLD 251
+NLD
Sbjct: 218 SSYDNLD 224
>gi|339483627|ref|YP_004695413.1| peptide deformylase [Nitrosomonas sp. Is79A3]
gi|338805772|gb|AEJ02014.1| Peptide deformylase [Nitrosomonas sp. Is79A3]
Length = 177
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 13/175 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ G+PVL E A+ VD + + + +I DM M S G GLAAPQIGV L++++
Sbjct: 6 VLKMGEPVLLEVAKPVD--QFDTPELHALIQDMQDTMASLNGAGLAAPQIGVSLQVVIF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + D PF +L LNP+L SD +EGCLSV G R +V RY
Sbjct: 63 ------GFEKNQRYPDADEVPFTVL--LNPQLTPLSDEQEDGWEGCLSVPGMRGMVPRYA 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
++ G+D+ G I +G+ AR++QHECDHL G LY M + FR+ D+
Sbjct: 115 NLRYQGVDQYGAAIDRTVSGFHARVVQHECDHLQGILY--PMRIRNFRLFGFTDV 167
>gi|430742278|ref|YP_007201407.1| peptide deformylase [Singulisphaera acidiphila DSM 18658]
gi|430013998|gb|AGA25712.1| peptide deformylase [Singulisphaera acidiphila DSM 18658]
Length = 172
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 9/161 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQ GDPVL AR +D EI +E Q ++ DM++ + + GVGLAAPQ+GV + +I+
Sbjct: 5 IVQLGDPVLKAKARRLDAKEIANETTQTLVRDMLETLEDSGGVGLAAPQVGVSVALIL-- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + S DR ++ ++NP++ S T +EGCLS YR V R L
Sbjct: 63 -AGSFPTEHSP------DRPEVEVTALVNPRIVWSSVETESAWEGCLSFLDYRVQVVRPL 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I+V DG ++++ATG+ AR+LQHE DHL+G L +D+
Sbjct: 116 AIQVEYDTLDGTAVRLEATGFFARVLQHEIDHLEGILTLDR 156
>gi|386774020|ref|ZP_10096398.1| N-formylmethionyl-tRNA deformylase [Brachybacterium
paraconglomeratum LC44]
Length = 228
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 97/172 (56%), Gaps = 8/172 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IVQAG P L A + + + D M MR APGVGLAAPQIG+PL V+E
Sbjct: 23 IVQAGHPALRRTAVAAR-DRLEPALLAELADAMTVTMRDAPGVGLAAPQIGLPLSFYVVE 81
Query: 138 DTKEYISYQSKE-EIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D + + + ++ E + +RRP L +L+P + D T FEGCLSV+G++++V R
Sbjct: 82 DP--FAAEEGEDPEDELLERRPLALRALLDPVVDPVGDETVFAFEGCLSVDGWQSIVPRS 139
Query: 197 LDIEVTG--LDRDGQPIKVDA--TGWQARILQHECDHLDGTLYVDKMVPKTF 244
+ + L G ++D GW ARILQHE DHL GTL D+MV ++F
Sbjct: 140 RRVRLRAHELLPGGSLREIDEEHVGWTARILQHETDHLGGTLCHDRMVARSF 191
>gi|269955166|ref|YP_003324955.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
gi|269303847|gb|ACZ29397.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
Length = 227
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 102/175 (58%), Gaps = 17/175 (9%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
++++ ++ I + G+PVLH PAR V E+G+ + +IDDM M A GVGLAAPQ+G
Sbjct: 27 ESQRGRVLRITEIGEPVLHTPARPVT--ELGTPELARLIDDMFTTMDVAEGVGLAAPQVG 84
Query: 129 VPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRT-ALFFEGCLSVN 187
V LR+ V + T + A DR + ++NP+L+ D + EGCLSV
Sbjct: 85 VDLRVFVYDLTDD-----------AGDRH---VGAVVNPELELDLDADPEVEDEGCLSVP 130
Query: 188 GYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
G A +ER + G+D+ G P++++ATG+ AR HE HLDGTLY D + P+
Sbjct: 131 GAYAPLERPGGATIRGVDQLGGPVQLEATGYLARCFIHEAQHLDGTLYWDHLTPE 185
>gi|163855075|ref|YP_001629373.1| peptide deformylase [Bordetella petrii DSM 12804]
gi|163258803|emb|CAP41102.1| peptide deformylase [Bordetella petrii]
Length = 177
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 92/162 (56%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A+ V G+ + + ++ DM + M A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAQPV--GQFDTPELHELVADMFETMVHAKGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E D P L ++ NP + +SD +EGCLSV G R +V RY
Sbjct: 62 ------GFEHNERYP--DAPPVPLTVLCNPVITPRSDEREDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D GQPI+ +A G+ AR++QHECDHL G LY ++
Sbjct: 114 HIRYRGFDPHGQPIEREAEGFHARVVQHECDHLIGRLYPSRI 155
>gi|254431098|ref|ZP_05044801.1| peptide deformylase [Cyanobium sp. PCC 7001]
gi|197625551|gb|EDY38110.1| peptide deformylase [Cyanobium sp. PCC 7001]
Length = 180
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GDP L + A V IGS + ++DD+ M + G GLAAPQIGV LR+++
Sbjct: 6 VLRLGDPFLRQVAVAVPRQAIGSPELSALLDDLRDTMAARDGAGLAAPQIGVALRVVIFG 65
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
T ++ P +++NP L + +EGCLSV G R +V R+
Sbjct: 66 FTTNPRYPEAP---------PIPDTVLINPVLTPLGSARSSGWEGCLSVPGLRGLVPRWD 116
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT 243
I TGLD G+P++ + G+ AR++QHECDHLDG L+ D++ +T
Sbjct: 117 RIRYTGLDEQGRPLQREVEGFHARVVQHECDHLDGVLFPDRIEDRT 162
>gi|340776758|ref|ZP_08696701.1| peptide deformylase [Acetobacter aceti NBRC 14818]
Length = 184
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I + G PVL +PA V+ + +Q +IDDM++ MR A GVGLAAPQ+ V RI
Sbjct: 3 LLKIARMGHPVLLKPAELVE--NVADPVVQTLIDDMIETMRDAGGVGLAAPQVHVSKRI- 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
++ Y ++ ++ P + +++NP ++ + L EGCLS+ G R V
Sbjct: 60 -------FVYYVPPTRLEEGEQSPDGIQVLVNPVIEPLDEEVRLRMEGCLSIPGLRGWVP 112
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
RY + G+DR G P+ A G+ A ++QHE DHLDG LY +M
Sbjct: 113 RYARVRYQGIDRTGAPVSGIAQGFHANVIQHETDHLDGVLYPMRM 157
>gi|383762022|ref|YP_005441004.1| peptide deformylase [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381382290|dbj|BAL99106.1| peptide deformylase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 188
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 105/179 (58%), Gaps = 20/179 (11%)
Query: 77 EIVQAGDP---VLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
+IV DP VL + A+ V D G R+ ++DDM++ MR+APGVGLAAPQ+GV LR
Sbjct: 5 KIVTVNDPDHEVLFKNAQRVRDFGP----RLHQLLDDMIETMRAAPGVGLAAPQVGVSLR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ V+E ++ ++ + L I+NP++ KK + EGCLS+ G A
Sbjct: 61 VAVIEYPEDEEDPENTKR----------LYEIINPEIIKKRG-AEIGQEGCLSIPGLAAD 109
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
VER I V DR G+ I++ A GW ARI QHE DHL GTL D+ V + +++V+N D
Sbjct: 110 VERATQIVVRAQDRFGKEIRIKAYGWLARIFQHEIDHLAGTLMTDRAV-QLYKLVKNAD 167
>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
[Herbaspirillum seropedicae SmR1]
gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein
[Herbaspirillum seropedicae SmR1]
Length = 178
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ V E G+ + ++DDM + MR+ G GLAAPQIGV L++++
Sbjct: 5 EILKMGDPRLLRQAQPVT--EFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLVI- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + + D P +++NP L S++ +EGCLSV G R VV R+
Sbjct: 62 --------FGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRW 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G+D++G+PI G+ AR++QHECDHL G LY
Sbjct: 114 SRLRYQGVDQNGEPIDRSVEGFHARVVQHECDHLQGILY 152
>gi|409992748|ref|ZP_11275921.1| peptide deformylase [Arthrospira platensis str. Paraca]
gi|291566279|dbj|BAI88551.1| peptide deformylase [Arthrospira platensis NIES-39]
gi|409936394|gb|EKN77885.1| peptide deformylase [Arthrospira platensis str. Paraca]
Length = 177
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 11/177 (6%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A + + Q GDPVL + A+ V I RIQ++IDD++ + GVG+AAPQ+G R
Sbjct: 2 ADILAVTQLGDPVLRDHAQPV--ANIWEPRIQSLIDDLMATVIEKNGVGIAAPQVGYSDR 59
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
I+V+ ++ I Y + E++ ++NPK+ KSD +EGCLSV G R +
Sbjct: 60 ILVIA-SRPSIRYPAAPEMEP--------TAMINPKIIGKSDEMVADWEGCLSVPGIRGI 110
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
V RY IEV RDG + TG+ ARI QHE DHL+G +++D++ + E+
Sbjct: 111 VNRYQAIEVEYTSRDGHLEHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTED 167
>gi|421155382|ref|ZP_15614859.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|404520524|gb|EKA31191.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
Length = 179
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A+ V GSE +Q +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP++ D +EGCLSV G R V R+
Sbjct: 64 -------GFERSERYPDAPAVPPTIL--LNPRITLLDDEMEEGWEGCLSVPGLRGAVSRH 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I GLD GQPI G+ AR++QHECDHL G LY ++
Sbjct: 115 RRIRYQGLDPQGQPIDRSVEGFHARVVQHECDHLSGRLYPSRIT 158
>gi|145589658|ref|YP_001156255.1| peptide deformylase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145048064|gb|ABP34691.1| peptide deformylase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 181
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 9/158 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L E A+ VDP I S++IQ +IDD+++ M + G GLAAPQIGV +++V
Sbjct: 6 ILRMGDPRLLEIAKPVDPKLISSQQIQTLIDDLLETMYAVNGAGLAAPQIGVNQQVVVF- 64
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ Y E++ +++NP + SD + +EGCLSV G RA V RY
Sbjct: 65 GFDQNPRYPDAEQVPE--------TILINPIITPLSDISMEDWEGCLSVPGLRAKVPRYT 116
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G DR GQ I + AR+++HECDHL G L+
Sbjct: 117 KIRYQGFDRYGQSIDRTVEDFHARVVRHECDHLIGKLF 154
>gi|435853621|ref|YP_007314940.1| peptide deformylase [Halobacteroides halobius DSM 5150]
gi|433670032|gb|AGB40847.1| peptide deformylase [Halobacteroides halobius DSM 5150]
Length = 146
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 95/163 (58%), Gaps = 22/163 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + GDPVL A+EV E+ +++ + ++D+MV+ M A GVGLAAPQIG+ RI+V++
Sbjct: 6 IREVGDPVLRTTAKEVT--EV-TDKTRQLLDNMVETMYDAEGVGLAAPQIGISKRIVVID 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ ++NP++ KS++T + EGCLS+ G VER
Sbjct: 63 VGSGVVE-------------------LINPQIIDKSEKTYVDQEGCLSIPGETGKVERAF 103
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
++ V L+RDG+ +V+ G AR LQHE DHL+G L+ DK +
Sbjct: 104 EVTVRALNRDGEKFEVEGKGLLARALQHEIDHLEGKLFTDKTI 146
>gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 188
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 92/160 (57%), Gaps = 16/160 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH PAREV E + ++ ++ DM M APGVGLAAPQ+GVPLR+ V
Sbjct: 10 GDPVLHAPAREV---EAFDDDLRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFVY----- 61
Query: 142 YISYQSKE--EIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
SY++ E ++ P DL + P +++D EGCLS G R + R
Sbjct: 62 --SYETDEGEPLRGVAVNP-DLF--ITPVAVREADEDTEE-EGCLSFPGERFPLVRADRA 115
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ +D DG+P ++ A GW ARILQHE DHLDG LY D++
Sbjct: 116 ILRAVDLDGRPFEIQAAGWFARILQHEFDHLDGLLYTDRL 155
>gi|116049053|ref|YP_792145.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|296390510|ref|ZP_06879985.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
gi|313106089|ref|ZP_07792346.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
gi|386064932|ref|YP_005980236.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|392985398|ref|YP_006483985.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|416873167|ref|ZP_11917291.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|419752273|ref|ZP_14278681.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|421175822|ref|ZP_15633494.1| peptide deformylase [Pseudomonas aeruginosa CI27]
gi|115584274|gb|ABJ10289.1| probable peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|310878848|gb|EFQ37442.1| putative peptide deformylase [Pseudomonas aeruginosa 39016]
gi|334845303|gb|EGM23867.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|348033491|dbj|BAK88851.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|384401283|gb|EIE47638.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|392320903|gb|AFM66283.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|404531600|gb|EKA41540.1| peptide deformylase [Pseudomonas aeruginosa CI27]
Length = 179
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A+ V +GSE +Q +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP++ D +EGCLSV G R V R+
Sbjct: 64 -------GFERSERYPDAPAVPPTIL--LNPRITPLDDEMEEGWEGCLSVPGLRGAVSRH 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I GLD GQPI G+ AR++QHECDHL G LY ++
Sbjct: 115 RRIRYQGLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|301775659|ref|XP_002923264.1| PREDICTED: peptide deformylase, mitochondrial-like [Ailuropoda
melanoleuca]
gi|281349917|gb|EFB25501.1| hypothetical protein PANDA_012363 [Ailuropoda melanoleuca]
Length = 141
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 79/131 (60%)
Query: 114 MRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKS 173
MR VGL+APQ+GVPL+++ LE + + +A PF L + +NP L+
Sbjct: 1 MRRRRCVGLSAPQLGVPLQVLALEFPEALFRACAPGLREARQMEPFPLRVFVNPSLRVLD 60
Query: 174 DRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGT 233
R F EGC SV G+ A V R+ ++++GLD G+ + A+GW ARI+QHE DHL G
Sbjct: 61 SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGC 120
Query: 234 LYVDKMVPKTF 244
L++DKM KTF
Sbjct: 121 LFIDKMDSKTF 131
>gi|290968494|ref|ZP_06560033.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L]
gi|290781490|gb|EFD94079.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L]
Length = 171
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 23/169 (13%)
Query: 70 NKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
N AKL I++AG+PVL A+ P + ++ I+ ++DDM + M A GVGLAAPQI
Sbjct: 16 NNVAKL-NIIKAGNPVLKAAAK---PVPVITKHIKKLLDDMAETMYKANGVGLAAPQINE 71
Query: 130 PLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
LR+IVL+D L+ ++NP++ + S EGCLSV GY
Sbjct: 72 SLRLIVLDDGN-------------------GLIELINPEILETSTEMEEDTEGCLSVPGY 112
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+V RY I+V L+R G+ + + + ARI QHE DHL+G L+++K
Sbjct: 113 YGIVSRYSKIKVKALNRRGKTVYYEPEHFLARIFQHEIDHLNGILFIEK 161
>gi|363582387|ref|ZP_09315197.1| formylmethionine deformylase [Flavobacteriaceae bacterium HQM9]
Length = 175
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++++ G P L + + EI S Q+ IDD++ MRS G G+AAPQ+ RI ++
Sbjct: 5 KVIKLGHPTLRSKSGIISKNEINSFEFQDFIDDLIHTMRSQNGAGIAAPQVACLKRIFIM 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + Y +KE F L +++NP+++ + +EGCLS+ R ++R+
Sbjct: 65 E-MQNNPRYPNKE--------SFLLNVVINPEIEYLDNELVDSWEGCLSIPTLRGRLKRH 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+I + GLDR G P + TG+ A + QHE DHLDGTL++DKM
Sbjct: 116 KNILLKGLDRKGVPFEKKMTGFAAIVAQHEMDHLDGTLFIDKM 158
>gi|421169393|ref|ZP_15627412.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|404526522|gb|EKA36732.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
Length = 179
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A+ V +GSE +Q +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP++ D +EGCLSV G R V R+
Sbjct: 64 -------GFERSERYPDAPAVPPTIL--LNPRITPLDDEMEEGWEGCLSVPGLRGAVSRH 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I GLD GQP+ G+ AR++QHECDHL G LY ++
Sbjct: 115 RRIRYQGLDPQGQPVDRSVEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|218892912|ref|YP_002441781.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
gi|254234257|ref|ZP_04927580.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
gi|416853568|ref|ZP_11910209.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|126166188|gb|EAZ51699.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719]
gi|218773140|emb|CAW28952.1| probable peptide deformylase [Pseudomonas aeruginosa LESB58]
gi|334845027|gb|EGM23594.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|453048272|gb|EME95985.1| peptide deformylase [Pseudomonas aeruginosa PA21_ST175]
Length = 179
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A+ V GSE +Q +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP++ D +EGCLSV G R V R+
Sbjct: 64 -------GFERSERYPDAPAVPPTIL--LNPRITPLDDEMEEGWEGCLSVPGLRGAVSRH 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I GLD GQPI G+ AR++QHECDHL G LY ++
Sbjct: 115 RRIRYQGLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|75765204|pdb|1SZZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765205|pdb|1SZZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765206|pdb|1SZZ|C Chain C, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765207|pdb|1SZZ|D Chain D, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765208|pdb|1SZZ|E Chain E, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765209|pdb|1SZZ|F Chain F, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765210|pdb|1SZZ|G Chain G, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765211|pdb|1SZZ|H Chain H, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
Length = 177
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 4 KILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFTTMRHAEGVGLAAPQIGILKQIVVV 63
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 64 GSEDNERYPGTPDVPE-----------RIILNPVITPLTKDTSGFWEGCLSVPGMRGYVE 112
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 113 RPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 170
>gi|61679585|pdb|1Y6H|A Chain A, Crystal Structure Of Lipdf
gi|61679586|pdb|1Y6H|B Chain B, Crystal Structure Of Lipdf
gi|75765202|pdb|1SV2|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (lipdf) At Ph7.5
gi|75765203|pdb|1SV2|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (lipdf) At Ph7.5
gi|75765298|pdb|1VEV|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (Lipdf) At Ph6.5
gi|75765299|pdb|1VEV|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (Lipdf) At Ph6.5
gi|75765300|pdb|1VEY|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (Lipdf) At Ph7.0
gi|75765301|pdb|1VEY|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (Lipdf) At Ph7.0
gi|75765302|pdb|1VEZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans(lipdf) At Ph8.0
gi|75765303|pdb|1VEZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans(lipdf) At Ph8.0
Length = 177
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 4 KILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 63
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 64 GSEDNERYPGTPDVPE-----------RIILNPVITPLTKDTSGFWEGCLSVPGMRGYVE 112
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 113 RPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 170
>gi|418583409|ref|ZP_13147478.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|418590357|ref|ZP_13154267.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|421181890|ref|ZP_15639376.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|375047017|gb|EHS39566.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|375050692|gb|EHS43170.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|404542920|gb|EKA52225.1| peptide deformylase [Pseudomonas aeruginosa E2]
Length = 179
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A+ V GSE +Q +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP++ D +EGCLSV G R V R+
Sbjct: 64 -------GFERSERYPDAPAVPPTIL--LNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRH 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I GLD GQPI G+ AR++QHECDHL G LY ++
Sbjct: 115 RRIRYQGLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|24215138|ref|NP_712619.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
gi|45657385|ref|YP_001471.1| peptide deformylase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|386074459|ref|YP_005988776.1| peptide deformylase [Leptospira interrogans serovar Lai str. IPAV]
gi|417765931|ref|ZP_12413887.1| peptide deformylase [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|417772371|ref|ZP_12420260.1| peptide deformylase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417777652|ref|ZP_12425469.1| peptide deformylase [Leptospira interrogans str. 2002000621]
gi|417783164|ref|ZP_12430887.1| peptide deformylase [Leptospira interrogans str. C10069]
gi|418667698|ref|ZP_13229108.1| peptide deformylase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671695|ref|ZP_13233044.1| peptide deformylase [Leptospira interrogans str. 2002000623]
gi|418680912|ref|ZP_13242149.1| peptide deformylase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692497|ref|ZP_13253575.1| peptide deformylase [Leptospira interrogans str. FPW2026]
gi|418704171|ref|ZP_13265050.1| peptide deformylase [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418711814|ref|ZP_13272566.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418716088|ref|ZP_13276156.1| peptide deformylase [Leptospira interrogans str. UI 08452]
gi|418726338|ref|ZP_13284949.1| peptide deformylase [Leptospira interrogans str. UI 12621]
gi|418730628|ref|ZP_13289122.1| peptide deformylase [Leptospira interrogans str. UI 12758]
gi|421084527|ref|ZP_15545386.1| peptide deformylase [Leptospira santarosai str. HAI1594]
gi|421102783|ref|ZP_15563387.1| peptide deformylase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421118030|ref|ZP_15578381.1| peptide deformylase [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421120866|ref|ZP_15581171.1| peptide deformylase [Leptospira interrogans str. Brem 329]
gi|421124019|ref|ZP_15584289.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421134892|ref|ZP_15595022.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|23396549|sp|Q93LE9.1|DEF_LEPIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|59797588|sp|Q72S74.1|DEF_LEPIC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira interrogans]
gi|24196204|gb|AAN49637.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
gi|45600624|gb|AAS70108.1| putative polypeptide deformylase protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|353458248|gb|AER02793.1| peptide deformylase [Leptospira interrogans serovar Lai str. IPAV]
gi|400327350|gb|EJO79602.1| peptide deformylase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400351870|gb|EJP04083.1| peptide deformylase [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400357730|gb|EJP13850.1| peptide deformylase [Leptospira interrogans str. FPW2026]
gi|409945742|gb|EKN95757.1| peptide deformylase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409953865|gb|EKO08361.1| peptide deformylase [Leptospira interrogans str. C10069]
gi|409960248|gb|EKO24002.1| peptide deformylase [Leptospira interrogans str. UI 12621]
gi|410010425|gb|EKO68565.1| peptide deformylase [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020775|gb|EKO87570.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410346204|gb|EKO97214.1| peptide deformylase [Leptospira interrogans str. Brem 329]
gi|410367897|gb|EKP23281.1| peptide deformylase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432930|gb|EKP77282.1| peptide deformylase [Leptospira santarosai str. HAI1594]
gi|410438506|gb|EKP87592.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410572639|gb|EKQ35704.1| peptide deformylase [Leptospira interrogans str. 2002000621]
gi|410581393|gb|EKQ49205.1| peptide deformylase [Leptospira interrogans str. 2002000623]
gi|410756580|gb|EKR18200.1| peptide deformylase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410766151|gb|EKR36839.1| peptide deformylase [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410767780|gb|EKR43041.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410774837|gb|EKR54841.1| peptide deformylase [Leptospira interrogans str. UI 12758]
gi|410788099|gb|EKR81826.1| peptide deformylase [Leptospira interrogans str. UI 08452]
gi|455667341|gb|EMF32662.1| peptide deformylase [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|455790002|gb|EMF41898.1| peptide deformylase [Leptospira interrogans serovar Lora str. TE
1992]
gi|456821728|gb|EMF70234.1| peptide deformylase [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 178
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPDVPE-----------RIILNPVITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 114 RPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 171
>gi|383315762|ref|YP_005376604.1| peptide deformylase [Frateuria aurantia DSM 6220]
gi|379042866|gb|AFC84922.1| peptide deformylase [Frateuria aurantia DSM 6220]
Length = 179
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 93/164 (56%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L + A+ V +GS+ ++ +I DM M +A GVGLAAPQIGV L++++
Sbjct: 4 EILRMGDPRLLKVAQPVPGHMLGSDELKQLIADMFDTMHAAGGVGLAAPQIGVDLQLVI- 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ ++ + + P ++LNP + S +EGCLSV G R V RY
Sbjct: 63 --------FGFEQADRYPEAPPVPRTILLNPVITHLSQDMEEGWEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D DG+ I A G+ AR++QHECDHL G LY +M
Sbjct: 115 TLIRYEGIDPDGEVIDRTAEGFHARVVQHECDHLIGRLYPSRMT 158
>gi|434407994|ref|YP_007150879.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
gi|428262249|gb|AFZ28199.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
Length = 177
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 19/166 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+Q G+P L + A V+ I ERIQ IID+++ + A GVG+AAPQ+ R+ +L
Sbjct: 7 IIQLGNPTLRQKAAWVE--NIQDERIQEIIDNLIATVSQANGVGIAAPQVAESYRLFILA 64
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLM----ILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
R P+ LM I+NPK+ SD +EGCLSV G R +V
Sbjct: 65 SHPN-------------ARYPYAPLMEPTAIINPKIIAYSDEVVKGWEGCLSVPGIRGLV 111
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
RY IEV DR+G+ T + ARI QHE DHLDG ++VD++
Sbjct: 112 PRYQTIEVEYTDRNGELKTQTLTDFVARIFQHEFDHLDGIVFVDRL 157
>gi|386353985|ref|YP_006052231.1| polypeptide deformylase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365804493|gb|AEW92709.1| polypeptide deformylase [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 200
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL EPA EV + G R+ ++DM M +A GVGLAAPQIG LR+ V + +
Sbjct: 39 GDPVLREPAAEVTVFDAGLARL---VEDMFATMYAADGVGLAAPQIGTALRVFVYDCPDD 95
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
EE++ L ++NP+L + T EGCLS+ G A R+ + V
Sbjct: 96 -------EELR-------HLGHVVNPRLVEAGGVTVTGSEGCLSLPGIDAATPRFDETVV 141
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G+D G P++V TG+ AR LQHEC HLDG L+ D++
Sbjct: 142 EGVDVHGHPVRVAGTGFFARCLQHECVHLDGGLFTDRL 179
>gi|428769441|ref|YP_007161231.1| peptide deformylase [Cyanobacterium aponinum PCC 10605]
gi|428683720|gb|AFZ53187.1| Peptide deformylase [Cyanobacterium aponinum PCC 10605]
Length = 172
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 11/165 (6%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
+ EI+Q G+PVL E A+EV+ +I + QN+ID+++ + + GVG+AAPQ+G+ RII
Sbjct: 2 IKEILQIGEPVLREIAQEVE--DIHCQETQNLIDELLDLTLKSHGVGIAAPQVGISKRII 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V+ S I+ D ++NP + S + EGCLSV R +V
Sbjct: 60 VVA---------SHPNIRYPDAPYMSPFAMINPLIVSHSQEIVIKEEGCLSVRQKRGMVA 110
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
RY DIEV RDGQ + + ARI+QHE DHL+G L+VD +
Sbjct: 111 RYRDIEVEYFTRDGQWHRKQYNNFIARIIQHELDHLNGILFVDHL 155
>gi|398971489|ref|ZP_10683659.1| peptide deformylase [Pseudomonas sp. GM30]
gi|424924493|ref|ZP_18347854.1| peptide deformylase [Pseudomonas fluorescens R124]
gi|398138884|gb|EJM27897.1| peptide deformylase [Pseudomonas sp. GM30]
gi|404305653|gb|EJZ59615.1| peptide deformylase [Pseudomonas fluorescens R124]
Length = 179
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S T FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPLTEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|107100575|ref|ZP_01364493.1| hypothetical protein PaerPA_01001600 [Pseudomonas aeruginosa PACS2]
gi|254239493|ref|ZP_04932815.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
gi|386059971|ref|YP_005976493.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|420140886|ref|ZP_14648610.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|421162172|ref|ZP_15621056.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|424940328|ref|ZP_18356091.1| probable peptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|451987225|ref|ZP_21935383.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|126192871|gb|EAZ56934.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192]
gi|346056774|dbj|GAA16657.1| probable peptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|347306277|gb|AEO76391.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|403246364|gb|EJY60096.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|404536827|gb|EKA46459.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|451754843|emb|CCQ87906.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
Length = 179
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A+ V GSE +Q +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP++ D +EGCLSV G R V R+
Sbjct: 64 -------GFERSERYPDAPAVPPTIL--LNPRITLLDDEMEEGWEGCLSVPGLRGAVSRH 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I GLD GQPI G+ AR++QHECDHL G LY ++
Sbjct: 115 RRIRYQGLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|376006575|ref|ZP_09783823.1| peptide deformylase [Arthrospira sp. PCC 8005]
gi|423064597|ref|ZP_17053387.1| peptide deformylase [Arthrospira platensis C1]
gi|375325075|emb|CCE19576.1| peptide deformylase [Arthrospira sp. PCC 8005]
gi|406713840|gb|EKD09008.1| peptide deformylase [Arthrospira platensis C1]
Length = 184
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 11/185 (5%)
Query: 65 LGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAA 124
+ G + + Q GDPVL + A+ V I RIQ++IDD++ + GVG+AA
Sbjct: 1 MNFGGIAMGDILAVTQLGDPVLRDHAQPV--ANIWEARIQSLIDDLMATVIEKNGVGIAA 58
Query: 125 PQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
PQ+G RI+V+ ++ I Y + E++ ++NPK+ KS+ +EGCL
Sbjct: 59 PQVGYSDRILVIA-SRPSIRYPAAPEMEP--------TAMINPKIIGKSEEMVADWEGCL 109
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
SV G R +V RY IEV RDG + TG+ ARI QHE DHL+G +++D++
Sbjct: 110 SVPGIRGIVNRYQAIEVEYTSRDGHLQHRELTGFVARIFQHEYDHLEGIIFLDRVADSHS 169
Query: 245 RIVEN 249
+ E+
Sbjct: 170 MMTED 174
>gi|294790517|ref|ZP_06755675.1| peptide deformylase [Scardovia inopinata F0304]
gi|294458414|gb|EFG26767.1| peptide deformylase [Scardovia inopinata F0304]
Length = 230
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 108/217 (49%), Gaps = 17/217 (7%)
Query: 42 NDVTFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSE 101
++ F H A +S+ + LP IVQ G+PVL G++ +
Sbjct: 4 DEKNFDSHLDAEVRELLSQV--------DGDGTLP-IVQMGEPVLRLKTVAY-CGQLKPK 53
Query: 102 RIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRP--- 158
++ + M + M +APGVGLA PQIG+ L + V+ED +S + E
Sbjct: 54 TLEQLKKVMRRTMLNAPGVGLAGPQIGLGLSLAVVEDHIRDLSDDEQAEADEAAASADPR 113
Query: 159 ----FDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
F +I+NP + D +A FFEGCLS +GY+AV +R+L+I+ D D + +
Sbjct: 114 GIADFPFHIIINPWYEPMDDASASFFEGCLSFDGYQAVRKRWLNIKAHWFDEDAVEHEAE 173
Query: 215 ATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
W ARI QHE DHL G +Y+DK ++ +NLD
Sbjct: 174 LHQWPARIFQHETDHLKGEVYIDKAEIRSLTSYDNLD 210
>gi|359689814|ref|ZP_09259815.1| peptide deformylase [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418748082|ref|ZP_13304374.1| peptide deformylase [Leptospira licerasiae str. MMD4847]
gi|418757559|ref|ZP_13313746.1| peptide deformylase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384115336|gb|EIE01594.1| peptide deformylase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404275151|gb|EJZ42465.1| peptide deformylase [Leptospira licerasiae str. MMD4847]
Length = 176
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 12/177 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V P E+G++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILKIGDPLLRKTSETVHPDELGTKEFKKLIRDMFDTMRHADGVGLAAPQIGIMKKIVVV 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
S E + R P +L +NP++K +D +EGCLSV G R VER
Sbjct: 65 ---------GSDPEDDSPSRVPERIL--INPEIKPVTDSLDGNWEGCLSVPGMRGYVERP 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENLDL 252
I++ +D G G+ A + QHECDHL+G LYVD++ K F ++++L
Sbjct: 114 NKIQMKWMDEKGSIHDEIIEGYSAIVYQHECDHLNGVLYVDRLKSTKMFGFNDSMEL 170
>gi|452949141|gb|EME54612.1| polypeptide deformylase [Amycolatopsis decaplanina DSM 44594]
Length = 190
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 22/178 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG+PVLH P RE+ + +++ ++DDM + M +A GVGLAA QIG+ LR+ V +
Sbjct: 6 IVIAGEPVLHNPTREITEFDA---KLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFVYD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
+ ++ +++NPKL+ + +EGCLS G
Sbjct: 63 CPDDEGTHHKG--------------VVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
R +VTG D DG PI+V+ TG+ AR LQHE DHLDG +Y+D++V + R + +
Sbjct: 109 TGRASWAKVTGFDVDGDPIEVEGTGYLARCLQHETDHLDGFIYLDRLVGRHARAAKKM 166
>gi|431803813|ref|YP_007230716.1| peptide deformylase [Pseudomonas putida HB3267]
gi|430794578|gb|AGA74773.1| peptide deformylase [Pseudomonas putida HB3267]
Length = 178
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V IGS +Q +IDDM + MR GVGLAAPQIG+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMIGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E D P ++LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYP--DAEPVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHICYEGIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|359686220|ref|ZP_09256221.1| peptide deformylase [Leptospira santarosai str. 2000030832]
gi|422003961|ref|ZP_16351186.1| peptide deformylase [Leptospira santarosai serovar Shermani str. LT
821]
gi|417257316|gb|EKT86719.1| peptide deformylase [Leptospira santarosai serovar Shermani str. LT
821]
Length = 178
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V E+ ++ + +I DM M A GVGLAAPQIG+ RI+V+
Sbjct: 5 KILRMGDPILRQVSEPVAENELQTKEFKKLIRDMFDTMHHAEGVGLAAPQIGILKRIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y + E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPNVPE-----------RVILNPTITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 114 RPNKIRMQWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 171
>gi|291443077|ref|ZP_06582467.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
gi|291346024|gb|EFE72928.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
Length = 205
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+ GDP+LH P +V + G + +I+DM M +A GVGLAA QIGVPL++ V
Sbjct: 39 EMSLLGDPLLHRPCEDVT--DFGPS-LAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVY 95
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ ++++ L ++NP+L + T EGCLS+ G A ER+
Sbjct: 96 D-------CPDDDDVR-------HLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERF 141
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
V GL G+P+++ TGW AR LQHECDHL+GT+Y D++
Sbjct: 142 DHAVVEGLTMTGEPVRIAGTGWFARCLQHECDHLEGTVYPDRLT 185
>gi|209523408|ref|ZP_03271963.1| peptide deformylase [Arthrospira maxima CS-328]
gi|209496150|gb|EDZ96450.1| peptide deformylase [Arthrospira maxima CS-328]
Length = 177
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 11/172 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL + A+ V I RIQ++IDD++ + GVG+AAPQ+G RI+V+
Sbjct: 7 VTQLGDPVLRDHAQPV--ANIWEARIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVIA 64
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ I Y + E++ ++NPK+ KS+ +EGCLSV G R +V RY
Sbjct: 65 -SRPSIRYPAAPEMEP--------TAMINPKIIGKSEEMVADWEGCLSVPGIRGIVNRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
IEV RDG + TG+ ARI QHE DHL+G +++D++ + E+
Sbjct: 116 AIEVEYTSRDGHLQHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTED 167
>gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
Length = 175
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 97/167 (58%), Gaps = 18/167 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I+ A DPVL R VD + + ++ +IDDM + M APGVGLAAPQ+GV R
Sbjct: 2 AILP-IIWAPDPVLKTKCRSVD---VVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+IV++ + D +P + ++ NP++ +SD T ++ EGCLS+ A
Sbjct: 58 VIVVD-------------VAGKDEKPQPIALV-NPEIVWRSDATQIYEEGCLSLPELYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
VER ++V LDRDG K++ G A LQHE DH+DG L+VD +
Sbjct: 104 VERASHVKVRYLDRDGAEQKIEGEGLLAVCLQHEIDHIDGVLFVDHI 150
>gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234]
gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234]
Length = 174
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + + P E I+ + DDM++ M APG+GLAA QIGVP R++VL+ +KE
Sbjct: 11 DPILRQVST---PVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLVLDVSKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ P L+ +NPK+ K S+ +++ EGCLS+ Y A VER I V
Sbjct: 67 ----------GEEKTP---LVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVE 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
LDRDG+ V+A G A LQHE DHL+G L++D
Sbjct: 114 YLDRDGKQQSVEADGLLATCLQHEIDHLNGVLFID 148
>gi|71907756|ref|YP_285343.1| formylmethionine deformylase [Dechloromonas aromatica RCB]
gi|71847377|gb|AAZ46873.1| Formylmethionine deformylase [Dechloromonas aromatica RCB]
Length = 204
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ G+P+L E A+ V E G+ ++ +I+DM M +A GVGLAAPQIG+ L++++
Sbjct: 34 ILRMGEPLLFEVAKAVT--EFGTSELRALIEDMFDSMEAAGGVGLAAPQIGIGLQMVIF- 90
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E D L +++NP + D L +EGCLSV G R V R+
Sbjct: 91 ------GFEKSERYP--DAEAVPLTVLINPLITPVGDEEELGWEGCLSVPGLRGEVPRHT 142
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D +G PI G+ AR++QHECDHL G LY ++
Sbjct: 143 RIRYQGFDPEGTPIDRTVEGFHARVVQHECDHLIGRLYPSRI 184
>gi|359726732|ref|ZP_09265428.1| peptide deformylase [Leptospira weilii str. 2006001855]
Length = 178
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 13/165 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + ++ V E+ ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDPILRQVSKPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPDVPE-----------RVILNPVITSLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I + +D G G++A + QHECDHL G LYVD++
Sbjct: 114 RPNKIRMQWMDERGNQFDETIDGYKAVVYQHECDHLSGILYVDRL 158
>gi|300790374|ref|YP_003770665.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
gi|384153904|ref|YP_005536720.1| polypeptide deformylase [Amycolatopsis mediterranei S699]
gi|399542252|ref|YP_006554914.1| polypeptide deformylase [Amycolatopsis mediterranei S699]
gi|299799888|gb|ADJ50263.1| putative polypeptide deformylase [Amycolatopsis mediterranei U32]
gi|340532058|gb|AEK47263.1| polypeptide deformylase [Amycolatopsis mediterranei S699]
gi|398323022|gb|AFO81969.1| polypeptide deformylase [Amycolatopsis mediterranei S699]
Length = 192
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 101/179 (56%), Gaps = 24/179 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG+PVLH+P RE+ + E+++ ++DDM + M +A GVGLAA QIG+ LR+ V +
Sbjct: 6 IVIAGEPVLHQPTREITEFD---EKLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFVYD 62
Query: 138 -DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRA 191
E + ++ +++NPKL+ + +EGCLS G
Sbjct: 63 CPDDEGVRHKG---------------VVVNPKLETSEIPETMPDPDDDWEGCLSAPGESY 107
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
R +VTG D DG PI+V+ TG+ AR LQHE DHLDG +Y+D++V + R + +
Sbjct: 108 PTGRAKWAKVTGSDIDGHPIEVEGTGYFARCLQHETDHLDGYIYLDRLVGRHARAAKKM 166
>gi|121533703|ref|ZP_01665530.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
gi|121307694|gb|EAX48609.1| peptide deformylase [Thermosinus carboxydivorans Nor1]
Length = 154
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 23/162 (14%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI +AGD VL E A V G+I +++ ++DDM + M +A GVGLAAPQ+GV LRIIV+
Sbjct: 5 EIKKAGDKVLKEKAAPV--GKI-DRKVKQLLDDMAQTMYAAEGVGLAAPQVGVSLRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ L+ ++NP + ++ + EGCLSV G VERY
Sbjct: 62 DVGD-------------------GLIELINPVIVA-AEGSETNTEGCLSVPGVYGEVERY 101
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ V GL+R G+ +++ TG AR LQHE DHLDG L+++K
Sbjct: 102 AQVVVEGLERSGKKVRITGTGLLARALQHEIDHLDGVLFIEK 143
>gi|320169511|gb|EFW46410.1| polypeptide deformylase [Capsaspora owczarzaki ATCC 30864]
Length = 196
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
++ G+ L P+R+V E+ S Q +ID M+ MR GVG+AA Q+G I +E
Sbjct: 21 LLAIGEDSLRLPSRQVSLDELRSSATQALIDRMIATMRRTEGVGIAAVQLGDNRAIACIE 80
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
T ++++ + E L +++NP++ + S EGCLSV G +A+V R
Sbjct: 81 FTAKHLAEATPEMAATHKMEAVPLTVMVNPRVLRASSDLVEGAEGCLSVPGMQAIVFRPR 140
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
+ + LDR+G P + +GW ARI HE DHL G L+ DKM K+ ++
Sbjct: 141 HVAIDCLDRNGAPQTLKLSGWSARIAMHEVDHLKGELFTDKMERKSLAVMHK 192
>gi|357397945|ref|YP_004909870.1| Peptide deformylase 2 [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337764354|emb|CCB73063.1| Peptide deformylase 2 [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 166
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL EPA EV + G R+ ++DM M +A GVGLAAPQIG LR+ V +
Sbjct: 5 GDPVLREPAAEVTVFDAGLARL---VEDMFATMYAADGVGLAAPQIGTALRVFVYD---- 57
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
EE++ L ++NP+L + T EGCLS+ G A R+ + V
Sbjct: 58 ---CPDDEELR-------HLGHVVNPRLVEAGGVTVTGSEGCLSLPGIDAATPRFDETVV 107
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G+D G P++V TG+ AR LQHEC HLDG L+ D++
Sbjct: 108 EGVDVHGHPVRVAGTGFFARCLQHECVHLDGGLFTDRL 145
>gi|410941011|ref|ZP_11372810.1| peptide deformylase [Leptospira noguchii str. 2006001870]
gi|410783570|gb|EKR72562.1| peptide deformylase [Leptospira noguchii str. 2006001870]
Length = 178
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 97/178 (54%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V EI ++ + +I DM MR A GVGLAAPQIGV +I+V+
Sbjct: 5 KILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGVLKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
E+ + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSENNERYPGTPDVPE-----------RIILNPIITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL+G LYVD++ K F E LD
Sbjct: 114 RPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLEGILYVDRLKDTKRFGFNETLD 171
>gi|411005212|ref|ZP_11381541.1| polypeptide deformylase [Streptomyces globisporus C-1027]
Length = 181
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+ GDPVLH P +V + G + +++DM M +A GVGLAA QIGVPL++ V
Sbjct: 15 EMSLLGDPVLHRPCEDVT--DFGPS-LAKLVEDMFATMYAAQGVGLAANQIGVPLKVFVY 71
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + ++++ L ++NP+L + T EGCLS+ G A ER+
Sbjct: 72 DCPDD-------DDVR-------HLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERF 117
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
V GL G+P+++ TGW AR LQHECDHL+GT+Y D++
Sbjct: 118 DHAVVEGLTMTGEPVRIAGTGWFARCLQHECDHLEGTVYPDRLT 161
>gi|385680827|ref|ZP_10054755.1| polypeptide deformylase [Amycolatopsis sp. ATCC 39116]
Length = 184
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 93/170 (54%), Gaps = 22/170 (12%)
Query: 81 AGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK 140
AGDPVLH P REV E + ++ + DDM + M +A GVGLAA QIGV LR+ V D
Sbjct: 9 AGDPVLHNPTREV---EKFDDELRTLTDDMFETMYAAEGVGLAANQIGVDLRVFVY-DCP 64
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVER 195
+ + K +++NPKL+ + +EGCLS G R
Sbjct: 65 DDQGVRHKG-------------LVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGR 111
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
+VTG D DG PI+V+ TG+ AR LQHE DHLDG +Y+D++V + R
Sbjct: 112 ASWAKVTGFDLDGNPIEVEGTGYFARCLQHETDHLDGYIYLDRLVGRHAR 161
>gi|154509286|ref|ZP_02044928.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC
17982]
gi|153798920|gb|EDN81340.1| peptide deformylase [Actinomyces odontolyticus ATCC 17982]
Length = 212
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 95/180 (52%), Gaps = 21/180 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH A VD I SE +++++ DM++ M +APGVGLAAPQ+GV ++ V
Sbjct: 6 ICITGEPVLHRVADPVD--SIDSE-LRDLVADMIETMHAAPGVGLAAPQVGVGAQVFVWR 62
Query: 138 DTKEYISYQSKEEIKAFDRRP---FDLLM---ILNPKLKKKSDR------------TALF 179
E+ D P F+ ++ ++NP L D AL
Sbjct: 63 YGGAGSFDAQYREVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIALE 122
Query: 180 FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
EGCLSV GY + R L + G D DG I+V A GW ARI QHE DHL GTLYVD++
Sbjct: 123 SEGCLSVPGYGYPLRRVLGAVLRGYDVDGNAIEVSARGWLARIFQHEYDHLQGTLYVDRL 182
>gi|418677006|ref|ZP_13238284.1| peptide deformylase [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686053|ref|ZP_13247223.1| peptide deformylase [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|418739581|ref|ZP_13295963.1| peptide deformylase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421090211|ref|ZP_15551008.1| peptide deformylase [Leptospira kirschneri str. 200802841]
gi|400322906|gb|EJO70762.1| peptide deformylase [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001009|gb|EKO51632.1| peptide deformylase [Leptospira kirschneri str. 200802841]
gi|410739479|gb|EKQ84207.1| peptide deformylase [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410753164|gb|EKR10135.1| peptide deformylase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 178
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + + EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDPILRKISEPITEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPDVPE-----------RIILNPIITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 114 RPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 171
>gi|348027002|ref|YP_004766807.1| peptide deformylase [Megasphaera elsdenii DSM 20460]
gi|341823056|emb|CCC73980.1| peptide deformylase [Megasphaera elsdenii DSM 20460]
Length = 153
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 22/161 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++AGDPVL A+ P ++ I+ ++DDM + M +A GVGLAAPQ+ L++IVL+
Sbjct: 6 IIKAGDPVLKATAK---PVTKVNKHIKKLLDDMAETMYAAEGVGLAAPQVNESLQLIVLD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D L+ ++NP++ +KSD T + EGCLS+ GY VER
Sbjct: 63 DG-------------------HGLIELINPEILEKSDETNVDTEGCLSIPGYYGKVERAS 103
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I+V L R G+ + + G+ ARI QHE DHL G L+++K
Sbjct: 104 KIKVRSLTRHGKTVIYEPEGFLARIFQHEIDHLYGHLFIEK 144
>gi|388543385|ref|ZP_10146676.1| peptide deformylase [Pseudomonas sp. M47T1]
gi|388278697|gb|EIK98268.1| peptide deformylase [Pseudomonas sp. M47T1]
Length = 179
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEI-GSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
+I++ GD L A+ V PGE+ GS + +I DM + M GVGLAAPQIGV L++++
Sbjct: 4 DILKMGDERLLRVAQPV-PGELFGSAELDALIADMFQTMEHVGGVGLAAPQIGVDLQLVI 62
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
++ E D P +++NP + + T +EGCLSV G R VV+R
Sbjct: 63 F-------GFERSERYP--DAEPVPQTILINPLITPLNPATEDGWEGCLSVPGLRGVVDR 113
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
Y I G D GQPI+ A+G+ AR++QHECDHL G LY ++
Sbjct: 114 YSHIRYEGFDPQGQPIQRVASGFHARVVQHECDHLIGRLYPSRI 157
>gi|342218695|ref|ZP_08711301.1| peptide deformylase [Megasphaera sp. UPII 135-E]
gi|341589071|gb|EGS32437.1| peptide deformylase [Megasphaera sp. UPII 135-E]
Length = 153
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 23/166 (13%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKLP I++AG PVL A+ P ++ I+ ++DDM + M +A GVGLAAPQI L+
Sbjct: 2 AKLP-IIEAGSPVLKAQAK---PVPTITKHIKKLLDDMAETMYAANGVGLAAPQINESLQ 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++VL+D L+ ++NP++ + S EGCLSV GY
Sbjct: 58 LVVLDDGN-------------------GLIELINPEILETSTEMEEDIEGCLSVPGYYGT 98
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
V+RY I+V L+R G+ + + + ARI QHE DHL GTL+++K
Sbjct: 99 VKRYSKIKVKSLNRKGKVVYYEPEHFLARIFQHEIDHLKGTLFIEK 144
>gi|334335983|ref|YP_004541135.1| peptide deformylase [Isoptericola variabilis 225]
gi|334106351|gb|AEG43241.1| Peptide deformylase [Isoptericola variabilis 225]
Length = 228
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 17/173 (9%)
Query: 71 KKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVP 130
++ ++ I + G+PVLH PAR V E + + +IDDM M A GVGLAAPQ+GV
Sbjct: 30 RRGRVLRITEIGEPVLHTPARTVT--EFSTPELARLIDDMFATMEVAEGVGLAAPQVGVD 87
Query: 131 LRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRT-ALFFEGCLSVNGY 189
LR+ V + T E+ DR + ++NP+L+ ++ + EGCLSV G
Sbjct: 88 LRVFVYDLTDEH-----------GDRH---VGHVVNPELEVDAEASPETEDEGCLSVPGA 133
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
+ER + G+D+ G P+++ ATG+ AR HE +HLDGTLY D + P+
Sbjct: 134 YEPLERPGAATIRGVDQHGGPVQLTATGYLARCFIHEAEHLDGTLYWDHLSPE 186
>gi|335049769|ref|ZP_08542755.1| peptide deformylase [Megasphaera sp. UPII 199-6]
gi|333762264|gb|EGL39768.1| peptide deformylase [Megasphaera sp. UPII 199-6]
Length = 154
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 23/166 (13%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKL I++AG+PVL A+ P + ++ I+ ++DDM + M A GVGLAAPQI LR
Sbjct: 2 AKL-NIIKAGNPVLKAAAK---PVPVITKHIKKLLDDMAETMYKANGVGLAAPQINESLR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+IVL+D L+ ++NP++ + S EGCLSV GY +
Sbjct: 58 LIVLDDGN-------------------GLIELINPEILETSTEMEEDTEGCLSVPGYYGI 98
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
V RY I+V L+R G+ + + + ARI QHE DHL+G L+++K
Sbjct: 99 VSRYSKIKVKALNRRGKTVYYEPEHFLARIFQHEIDHLNGILFIEK 144
>gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
Length = 188
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 16/160 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH PAR+V + + +++++ DM + M APGVGLAAPQ+GVPLR+ V
Sbjct: 10 GDPVLHAPARDV---QAFDDDLRSLVADMYETMDEAPGVGLAAPQVGVPLRVFVY----- 61
Query: 142 YISYQSK--EEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
SY++ E ++ P + + P +++D EGCLS G R + R
Sbjct: 62 --SYETDDGEPLRGVAVNPD---LFITPVAVREADEDTEE-EGCLSFPGERFPLVRADRA 115
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ +D DG+P +++A GW ARILQHE DHLDG LY D++
Sbjct: 116 ILRAVDLDGRPYEIEAAGWFARILQHEYDHLDGLLYTDRL 155
>gi|339488798|ref|YP_004703326.1| peptide deformylase [Pseudomonas putida S16]
gi|338839641|gb|AEJ14446.1| peptide deformylase [Pseudomonas putida S16]
Length = 178
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +GS +Q +IDDM + MR GVGLAAPQIG+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E D P ++LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYP--DAEPVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHICYEGIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|421529663|ref|ZP_15976190.1| peptide deformylase [Pseudomonas putida S11]
gi|402212884|gb|EJT84254.1| peptide deformylase [Pseudomonas putida S11]
Length = 178
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +GS +Q +IDDM + MR GVGLAAPQIG+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPGHMLGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E D P ++LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYP--DAEPVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHICYEGIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|449473302|ref|XP_002190853.2| PREDICTED: peptide deformylase, mitochondrial, partial [Taeniopygia
guttata]
Length = 130
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 76/128 (59%)
Query: 125 PQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCL 184
PQ+GVPLR+ E + +A PF L +++NP L+ R EGC
Sbjct: 1 PQLGVPLRVFAAEKPPARCARYPPALRQAHRIEPFPLRVLVNPALRILDSRLVTGPEGCA 60
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
S++G+ A V R+ + V+G+D G P+ +A+GW ARI+QHE DHLDG LY+D+M P+TF
Sbjct: 61 SIHGFSAYVPRHWAVHVSGVDELGVPVSWEASGWAARIIQHEMDHLDGILYIDRMEPRTF 120
Query: 245 RIVENLDL 252
V ++L
Sbjct: 121 TNVGWMEL 128
>gi|104782988|ref|YP_609486.1| peptide deformylase [Pseudomonas entomophila L48]
gi|95111975|emb|CAK16702.1| peptide deformylase 2 [Pseudomonas entomophila L48]
Length = 178
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 88/159 (55%), Gaps = 9/159 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +GS ++ +IDDM + M GVGLAAPQIG+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMLGSAELRQLIDDMFETMAHVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV RY
Sbjct: 64 -------GFERSERYPDAEAVPRTIL--LNPVITPMSTEVEDGWEGCLSVPGLRGVVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I TG+D DG PI A G+ AR++QHECDHL G LY
Sbjct: 115 KHISYTGVDPDGNPIDRFADGFHARVVQHECDHLIGRLY 153
>gi|406931664|gb|EKD66915.1| hypothetical protein ACD_48C00677G0001 [uncultured bacterium]
Length = 167
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 12/157 (7%)
Query: 84 PVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYI 143
P LHE +R + EI S IQ +I DM+ M G+GLAAPQ+GV +++ ++
Sbjct: 11 PSLHEHSRRLTKEEILSPEIQQLIQDMIPTMYKEQGIGLAAPQVGVNIQLCII------- 63
Query: 144 SYQSKEEI--KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
KE I F L+++NP + + L EGCLSV G + V+RY I V
Sbjct: 64 ---GKEAIPENFFPTNISKDLVLINPTYTRTGRKVVLETEGCLSVPGKQGKVKRYKQIYV 120
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
LD G+PI +A G+ A + QHE DHL+ LY+DK
Sbjct: 121 EALDEQGEPIHFEAHGYLAHVAQHETDHLNAILYIDK 157
>gi|379335216|gb|AFD03203.1| peptide deformylase [uncultured bacterium W4-21b]
Length = 184
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ G+P+L + R + ++ +Q +DDMV M +A GVGLAA Q+G + IVL
Sbjct: 5 KIIRIGNPLLRQKIRPLTLPKLKGPELQTFLDDMVSTMHAANGVGLAANQVGKDVSAIVL 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + + F L + +N ++ K S + +EGCLSV GYR +V R
Sbjct: 65 E---------CQTNTRYPKEVDFALQVYINAEILKYSRKKFYDWEGCLSVPGYRGLVPRA 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + DR+G I+ +G++AR+LQHE DHL+G +Y+D+M
Sbjct: 116 ETLTIKAFDREGNSIRRTVSGFEARVLQHEIDHLNGLIYMDRM 158
>gi|381163302|ref|ZP_09872532.1| peptide deformylase [Saccharomonospora azurea NA-128]
gi|418461399|ref|ZP_13032474.1| peptide deformylase [Saccharomonospora azurea SZMC 14600]
gi|359738502|gb|EHK87387.1| peptide deformylase [Saccharomonospora azurea SZMC 14600]
gi|379255207|gb|EHY89133.1| peptide deformylase [Saccharomonospora azurea NA-128]
Length = 185
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 100/190 (52%), Gaps = 24/190 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I AGDPVLH+P REV + + + ++DDM + M +A GVGLAA QIGV LR+ V +
Sbjct: 6 ICIAGDPVLHQPTREVSEFD---QELATLVDDMFETMYAAEGVGLAANQIGVDLRVFVYD 62
Query: 138 -DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRA 191
E + ++ +++NP L + +EGCLSV G
Sbjct: 63 CPDDEGVRHKG---------------VVVNPTLTTSEIPETMPDPDDDWEGCLSVPGESF 107
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
R +VTG D +G P++V+ TG+ AR LQHE DHLDG LY+D++V + R + +
Sbjct: 108 PTGRASWAKVTGFDVEGNPVEVEGTGFFARCLQHETDHLDGYLYLDRLVGRHARAAKKML 167
Query: 252 LPLAEGCPKL 261
G P L
Sbjct: 168 KANKWGVPGL 177
>gi|170723021|ref|YP_001750709.1| peptide deformylase [Pseudomonas putida W619]
gi|169761024|gb|ACA74340.1| peptide deformylase [Pseudomonas putida W619]
Length = 178
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V IGS +Q +IDDM + MR GVGLAAPQ+G+ L++++
Sbjct: 4 DILKMGDERLLRVAAPVPEHLIGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV RY
Sbjct: 64 -------GFERSERYPDAEAVPQTIL--LNPVITPLSTEIEEGWEGCLSVPGLRGVVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G P+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHISYEGIDPQGNPVNRVADGFHARVVQHECDHLIGRLYPSRI 157
>gi|398338942|ref|ZP_10523645.1| peptide deformylase [Leptospira kirschneri serovar Bim str. 1051]
Length = 178
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + + EI ++ + +I DM MR A GVGLAAPQIG+ +++V+
Sbjct: 5 KILRMGDPILRKISEPITEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQVVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPDVPE-----------RIILNPIITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 114 RPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 171
>gi|239986135|ref|ZP_04706799.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
11379]
Length = 181
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+ GDP+LH P +V + G + +I+DM M +A GVGLAA QIGVPL++ V
Sbjct: 15 EMSLLGDPLLHRPCEDVT--DFGPS-LAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVY 71
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ ++++ ++NP+L + T EGCLS+ G A ER+
Sbjct: 72 D-------CPDDDDVRHLGH-------VVNPELVEADGLTVRGPEGCLSLPGLEAGTERF 117
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
V GL G+P+++ TGW AR LQHECDHL+GT+Y D++
Sbjct: 118 DHAVVEGLTMTGEPVRIAGTGWFARCLQHECDHLEGTVYPDRLT 161
>gi|372489323|ref|YP_005028888.1| peptide deformylase [Dechlorosoma suillum PS]
gi|359355876|gb|AEV27047.1| peptide deformylase [Dechlorosoma suillum PS]
Length = 182
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 89/158 (56%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ G PVL + ARE+ E G+ + +I DM M + GVGLAAPQIGV LR++V
Sbjct: 9 VLRMGHPVLRQRAREIT--EFGTPALAALIADMEATMVAEGGVGLAAPQIGVDLRLVVF- 65
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ S E PF +L LNP+L+ +EGCLS+ G R V R+
Sbjct: 66 ------GFDSSERYPEAPAIPFTVL--LNPQLEPLDSEEEEGWEGCLSLPGMRGWVPRWK 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ +G +G+P++ G+ AR++QHECDHLDG LY
Sbjct: 118 RLRYSGFTPEGEPLERVVEGFHARVVQHECDHLDGLLY 155
>gi|325982985|ref|YP_004295387.1| peptide deformylase [Nitrosomonas sp. AL212]
gi|325532504|gb|ADZ27225.1| peptide deformylase [Nitrosomonas sp. AL212]
Length = 177
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 13/168 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ G+P+L + A+ VD + + +I DM M G GLAAPQIGV L++++
Sbjct: 6 VLKMGEPLLLQVAKPVD--RFDTPELHELIQDMQDTMAYLNGAGLAAPQIGVSLQVVIF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + D PF +L LNP L SD +EGCLSV G R +V RY
Sbjct: 63 ------GFEKNQRYPDADEVPFTVL--LNPHLTPLSDEKEDGWEGCLSVPGLRGIVPRYT 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
++ G D+ G I + G+ AR++QHECDHL G LY M K FR
Sbjct: 115 NLHYQGFDQYGSAIDRNVNGFHARVVQHECDHLQGILY--PMRIKDFR 160
>gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda]
gi|238692021|sp|B3CTU1.1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda]
Length = 181
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 8/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
++ A DP+L + A VD ++ I+ ++DDM++ M GVGLAAPQ+ V RIIVL+
Sbjct: 6 LITAPDPILKKVASPVDTV---NDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIVLD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+K I KE+ + L M+ NP +K S++TA EGCLS+ V RY
Sbjct: 63 LSKVDI----KEDNITNSEYKYPLFMV-NPIVKAISNQTATAKEGCLSLPKQAIEVSRYH 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+I+VT LD + ++A GW AR +QHE DHLDG L VD +
Sbjct: 118 EIQVTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYL 159
>gi|152983750|ref|YP_001349601.1| peptide deformylase [Pseudomonas aeruginosa PA7]
gi|452881264|ref|ZP_21958072.1| peptide deformylase [Pseudomonas aeruginosa VRFPA01]
gi|150958908|gb|ABR80933.1| peptide deformylase [Pseudomonas aeruginosa PA7]
gi|452182466|gb|EME09484.1| peptide deformylase [Pseudomonas aeruginosa VRFPA01]
Length = 179
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V GS+ +Q +IDDM + MR GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAESFGSQELQRLIDDMFETMRHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP++ D +EGCLSV G R +V R+
Sbjct: 64 -------GFERSERYPDAPAVPPTIL--LNPRITALDDEIEEGWEGCLSVPGLRGMVPRH 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G+PI G+ AR++QHECDHL G LY ++
Sbjct: 115 RRIRYQGVDPQGKPIDRSVEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252]
gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252]
Length = 189
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 10/159 (6%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+L E A+ P S +Q ++DDMV+ M +A G+GLAAPQ+G R+ V++ T
Sbjct: 9 GDPILRERAQ---PVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVVDLTP- 64
Query: 142 YISYQSKEEIKA-FDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
KEE++A + P + +NP++ S+ F EGCLS+ R VVER + +
Sbjct: 65 -----MKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVR 119
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ LDR +P +++A G AR++QHE DHL+G L++D++
Sbjct: 120 IRYLDRQFRPQELEARGMLARVIQHEYDHLEGILFIDRI 158
>gi|398349954|ref|YP_006395418.1| peptide deformylase Def [Sinorhizobium fredii USDA 257]
gi|390125280|gb|AFL48661.1| peptide deformylase Def [Sinorhizobium fredii USDA 257]
Length = 174
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + + P E + I+ + DDM++ M APG+GLAA QIGVP R++VL+ +KE
Sbjct: 11 DPVLRQVST---PVETIDDDIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLVLDVSKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NPK+ + S+ +++ EGCLS+ Y A VER I V
Sbjct: 67 ----------GEEKKP---LVFINPKIVRSSEERSVYEEGCLSIPDYYAEVERPAAITVE 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
DRDG+ V+A G A LQHE DHL+G L++D
Sbjct: 114 FRDRDGKEQSVEADGLLATCLQHEIDHLNGVLFID 148
>gi|410094310|ref|ZP_11290751.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
gi|409758251|gb|EKN43575.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
Length = 179
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 9/159 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V GS+ ++ +I DM + M S GVGLAAPQIGV L++++
Sbjct: 4 KILKMGDERLLRIAPPVPQTMFGSDELKTLIADMFETMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + +EGCLSV G R +V R+
Sbjct: 64 -------GFERSERYPQAEAVPQTIL--INPVITPLYPAVEEGWEGCLSVPGLRGMVNRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D DGQPI+ DA G+ AR++QHECDHL G LY
Sbjct: 115 QSIRYEGFDPDGQPIQRDAFGFHARVVQHECDHLIGRLY 153
>gi|403740508|ref|ZP_10952619.1| peptide deformylase [Austwickia chelonae NBRC 105200]
gi|403190043|dbj|GAB79389.1| peptide deformylase [Austwickia chelonae NBRC 105200]
Length = 252
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 96/185 (51%), Gaps = 21/185 (11%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
L + ++ + + G+ VL P REV E G ++++IDDM M GVGLAA Q
Sbjct: 40 LAETRRGQRLRVTTVGEDVLARPCREVT--EFGGSTLRSLIDDMYATMACCHGVGLAANQ 97
Query: 127 IGVPLRIIVLEDTKEY----ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEG 182
+GV LR+ V + Y + + ++ DRRP D +++D EG
Sbjct: 98 VGVDLRLFVYDCDDAYGVRHVGHVINPVVEVRDRRPAD----------READE-----EG 142
Query: 183 CLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
CLSV G A V R V G+D G+P+ V+ TG AR LQHECDHLDG LY+D + +
Sbjct: 143 CLSVPGPSAAVNRPATAVVHGVDMYGKPVVVNGTGMLARCLQHECDHLDGKLYIDHLNGR 202
Query: 243 TFRIV 247
R V
Sbjct: 203 ERRRV 207
>gi|118594792|ref|ZP_01552139.1| peptide deformylase [Methylophilales bacterium HTCC2181]
gi|118440570|gb|EAV47197.1| peptide deformylase [Methylophilales bacterium HTCC2181]
Length = 171
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L A+ ++ + + + II+DM++ M++ G GLAAPQIG+ +++++
Sbjct: 5 DILKMGDPLLLSAAQPIE--AVNTPELNQIIEDMIETMKANDGAGLAAPQIGLSIQLVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E + PF +L +NP++ + +EGCLSV G R VV RY
Sbjct: 63 -------GFDSNERYPDAEEVPFTVL--INPEIIPLEEEMEDGWEGCLSVPGLRGVVPRY 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D+ GQ I G+ AR++QHECDHL G LY +M
Sbjct: 114 KSIHYKGIDQFGQTIDRKVDGFHARVVQHECDHLIGKLYPMRM 156
>gi|406905727|gb|EKD47110.1| hypothetical protein ACD_66C00219G0007 [uncultured bacterium]
Length = 154
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 19/156 (12%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
+ +L E ++E+ ++ + +Q + DDM++ M++ GVG+AAPQIG +R IV
Sbjct: 10 NELLREVSKEIKKEQLQDKDLQKLFDDMIETMKAEDGVGIAAPQIGQQIRAIV------- 62
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ ++ EI +NP++ K+S R EGCLSV R +VERY I +
Sbjct: 63 VTLENGPEI------------YINPEITKRSLRKQKGEEGCLSVPELRGIVERYQSICIK 110
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
LDR G PI +DA+ A I QHE DHLDG L++D+
Sbjct: 111 ALDRHGNPINLDASNLGAIIFQHEIDHLDGILFIDR 146
>gi|378949241|ref|YP_005206729.1| peptide deformylase [Pseudomonas fluorescens F113]
gi|359759255|gb|AEV61334.1| Peptide deformylase [Pseudomonas fluorescens F113]
Length = 179
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPADMFDSPALWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + + FEGCLSV G R VERY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLGPQMEEGFEGCLSVPGLRGAVERY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
DI G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QDIRYEGFDPKGEPIVRYASGFHARVVQHECDHLIGRLYPSRI 157
>gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii]
gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii]
Length = 176
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + G+P+L + A + P EI Q +IDDM + M PG+GLAAPQ+G +++V++
Sbjct: 6 ISKLGNPILRQKAVPLTPAEIKKASFQQLIDDMFETMYDEPGIGLAAPQVGRSQQLVVMD 65
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
E F +++NP ++ +EGCLSV+G R V R
Sbjct: 66 CPGE---------------GGFPKTVLINPTIQFYGPEQVEGWEGCLSVDGLRGKVTRPS 110
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
+ VTGLDR+ +P +A+G A +QHE DHL G L++D+M F + +D
Sbjct: 111 TVRVTGLDRNAKPFDFEASGLYAVCIQHELDHLIGKLFIDRMT--DFSTLTQMD 162
>gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419]
gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419]
Length = 174
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + + P E I+ + DDM++ M APG+GLAA QIGVP R++VL+ TKE
Sbjct: 11 DPVLRQVST---PVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLVLDVTKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NPK+ + S+ +++ EGCLS+ Y A VER I V
Sbjct: 67 ----------GEEKQP---LVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVE 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+DR+G+ V+A G A LQHE DHL+G L++D
Sbjct: 114 YVDREGKEQAVEADGLLATCLQHEIDHLNGVLFID 148
>gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117]
gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117]
Length = 187
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 22/161 (13%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL PA+EV + G E +Q +++DM + M + G GLAAPQ+GV LR+
Sbjct: 10 GDPVLRTPAQEVT--DFGPE-LQKLVEDMDQTMENVTGAGLAAPQVGVSLRVF------- 59
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+YQ+ +E I+NP L+ D EGCLS+ G A V R ++
Sbjct: 60 --TYQTGQERG----------HIVNPVLELSEDYQEDQVEGCLSIPGIAAPVRRRRHVKA 107
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
TG D+ G P++++ G AR QHE DHLDG L++D++ P+
Sbjct: 108 TGFDKFGNPVEIEGDGLLARCFQHETDHLDGILFLDRLEPE 148
>gi|417762746|ref|ZP_12410734.1| peptide deformylase [Leptospira interrogans str. 2002000624]
gi|418698207|ref|ZP_13259186.1| peptide deformylase [Leptospira interrogans serovar Bataviae str.
L1111]
gi|409941491|gb|EKN87120.1| peptide deformylase [Leptospira interrogans str. 2002000624]
gi|410762911|gb|EKR29070.1| peptide deformylase [Leptospira interrogans serovar Bataviae str.
L1111]
gi|456969310|gb|EMG10344.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
gi|456984027|gb|EMG20189.1| peptide deformylase [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 170
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 92/173 (53%), Gaps = 14/173 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + + V EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+ ED
Sbjct: 2 GDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y E +ILNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPGTPDVPE-----------RIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+ +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 111 RMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 163
>gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021]
gi|334314822|ref|YP_004547441.1| peptide deformylase [Sinorhizobium meliloti AK83]
gi|384528159|ref|YP_005712247.1| Peptide deformylase [Sinorhizobium meliloti BL225C]
gi|407719261|ref|YP_006838923.1| peptide deformylase [Sinorhizobium meliloti Rm41]
gi|433612205|ref|YP_007189003.1| peptide deformylase [Sinorhizobium meliloti GR4]
gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021]
gi|333810335|gb|AEG03004.1| Peptide deformylase [Sinorhizobium meliloti BL225C]
gi|334093816|gb|AEG51827.1| Peptide deformylase [Sinorhizobium meliloti AK83]
gi|407317493|emb|CCM66097.1| Peptide deformylase [Sinorhizobium meliloti Rm41]
gi|429550395|gb|AGA05404.1| peptide deformylase [Sinorhizobium meliloti GR4]
Length = 178
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + + P E I+ + DDM++ M APG+GLAA QIGVP R++VL+ TKE
Sbjct: 15 DPVLRQVST---PVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLVLDVTKE- 70
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NPK+ + S+ +++ EGCLS+ Y A VER I V
Sbjct: 71 ----------GEEKQP---LVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVE 117
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+DR+G+ V+A G A LQHE DHL+G L++D
Sbjct: 118 YVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFID 152
>gi|384534517|ref|YP_005718602.1| probabable peptide deformylase [Sinorhizobium meliloti SM11]
gi|418400256|ref|ZP_12973798.1| peptide deformylase [Sinorhizobium meliloti CCNWSX0020]
gi|23396548|sp|Q92SH6.2|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|336031409|gb|AEH77341.1| probabable peptide deformylase [Sinorhizobium meliloti SM11]
gi|359505725|gb|EHK78245.1| peptide deformylase [Sinorhizobium meliloti CCNWSX0020]
Length = 174
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + + P E I+ + DDM++ M APG+GLAA QIGVP R++VL+ TKE
Sbjct: 11 DPVLRQVS---TPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLVLDVTKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NPK+ + S+ +++ EGCLS+ Y A VER I V
Sbjct: 67 ----------GEEKQP---LVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVE 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+DR+G+ V+A G A LQHE DHL+G L++D
Sbjct: 114 YVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFID 148
>gi|452911474|ref|ZP_21960142.1| Peptide deformylase [Kocuria palustris PEL]
gi|452833402|gb|EME36215.1| Peptide deformylase [Kocuria palustris PEL]
Length = 190
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 93/173 (53%), Gaps = 22/173 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V GDPVLH PA +V + + ++ +I DM + M +A GVGLAAPQIGV LRI
Sbjct: 6 VVITGDPVLHRPAAKVTEFD---DSLRELIADMHETMDAAHGVGLAAPQIGVGLRIFTFV 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNP-----KLKKKSDRTALFFEGCLSVNGYRAV 192
+ + E I+NP K+ ++ EGCLSV GY
Sbjct: 63 FDNDDDAPNRGE--------------IINPVLTVGKISEQRPDPDEEAEGCLSVPGYSFP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
++R + + G D GQPI +ATGW AR++QHE DHLDG LYVD++ K R
Sbjct: 109 LKRAEWVRIAGFDPHGQPIAWEATGWFARVMQHEYDHLDGKLYVDRLDEKWSR 161
>gi|398987081|ref|ZP_10691847.1| peptide deformylase [Pseudomonas sp. GM24]
gi|399015671|ref|ZP_10717934.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398108135|gb|EJL98120.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398151305|gb|EJM39862.1| peptide deformylase [Pseudomonas sp. GM24]
Length = 179
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S T FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPLTEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT 243
I G D G+PI A+G+ AR++QHECDHL G LY ++ T
Sbjct: 115 QQIRYEGFDPKGEPIVRTASGFHARVVQHECDHLIGRLYPSRITDFT 161
>gi|456862922|gb|EMF81434.1| peptide deformylase [Leptospira weilii serovar Topaz str. LT2116]
Length = 170
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 93/173 (53%), Gaps = 14/173 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + ++ V E+ ++ + +I DM MR A GVGLAAPQIG+ +I+V+ ED
Sbjct: 2 GDPILRQVSKPVTDNELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y E +ILNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPGTPDVPE-----------RVILNPVITSLTKDTSGFWEGCLSVPGMRGYVERPNKI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+ +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 111 RMQWMDERGNQFDETIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 163
>gi|339018061|ref|ZP_08644204.1| peptide deformylase [Acetobacter tropicalis NBRC 101654]
gi|338752838|dbj|GAA07508.1| peptide deformylase [Acetobacter tropicalis NBRC 101654]
Length = 176
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I + G PVL + A EV+ G + IQ +IDDM++ + A GVGLAAPQ+ V R+ +
Sbjct: 5 KIARMGHPVLLKKAEEVEDGT--APDIQRLIDDMIETLADAGGVGLAAPQVHVSKRLFL- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y +S+ E D D+ +I+NP+L+ + FEGCLS+ G+R V RY
Sbjct: 62 -----YSVPESRSE--GVDDPAMDVQVIINPELEPVDEEMITRFEGCLSIPGWRGEVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ G DR G ++ A+G++A ++QHE DHL+G LY +M
Sbjct: 115 KRVRYAGYDRTGNRVEGVASGFRAHVMQHEMDHLNGILYPMRM 157
>gi|345303846|ref|YP_004825748.1| peptide deformylase [Rhodothermus marinus SG0.5JP17-172]
gi|345113079|gb|AEN73911.1| Peptide deformylase [Rhodothermus marinus SG0.5JP17-172]
Length = 189
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 96/159 (60%), Gaps = 10/159 (6%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+L E A+ P S +Q ++DDMV+ M +A G+GLAAPQ+G R+ V++ T
Sbjct: 9 GDPILRERAQ---PVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVVDLTP- 64
Query: 142 YISYQSKEEIKA-FDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
KEE++A + P + +NP++ S+ F EGCLS+ R VVER + +
Sbjct: 65 -----MKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVR 119
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ LDR +P +++A G AR++QHE DHL+G L++D +
Sbjct: 120 IRYLDRQFRPQELEARGMLARVIQHEYDHLEGVLFIDHI 158
>gi|424920645|ref|ZP_18344006.1| peptide deformylase [Pseudomonas fluorescens R124]
gi|404301805|gb|EJZ55767.1| peptide deformylase [Pseudomonas fluorescens R124]
Length = 215
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 21/187 (11%)
Query: 53 RTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVK 112
RT AI LL N+ + I++ DP L A+ P + + ++ ++DDM +
Sbjct: 30 RTCQAIDPT--LLNTCSNQPMAILNILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFE 84
Query: 113 VMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKK 172
M APG+GLAA Q+ V RI+V++ +++ + E + F +NP+ +
Sbjct: 85 TMYEAPGIGLAATQVNVHKRIVVMDLSED------RTEPRVF----------INPEFESL 128
Query: 173 SDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232
+D + EGCLSV G+ V+R +++ LDRDGQP ++ A G A +QHECDHL+G
Sbjct: 129 TDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNG 188
Query: 233 TLYVDKM 239
L+VD +
Sbjct: 189 KLFVDYL 195
>gi|424888917|ref|ZP_18312520.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174466|gb|EJC74510.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 171
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPILRQASK---PIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ VDA G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVDADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|28493277|ref|NP_787438.1| formylmethionine deformylase [Tropheryma whipplei str. Twist]
gi|39930873|sp|Q83GH8.1|DEF_TROWT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|28476318|gb|AAO44407.1| formylmethionine deformylase [Tropheryma whipplei str. Twist]
Length = 228
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
K+ I G VLH PA+ V IQ I+ DM M +APGVGLA PQIG+ LR
Sbjct: 34 GKILPIYITGHAVLHAPAKPV----TDFSGIQEIVRDMFATMFAAPGVGLAGPQIGLGLR 89
Query: 133 IIVLEDTKEYISYQS---KEEI---KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
I V T+ +Q ++ K +R + N + DR EGCLS
Sbjct: 90 IFVYSYTEGDTLHQGVAINPDLLIPKGVPKRQTNKQQANNSTSCDEPDR-----EGCLSF 144
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
GY+ +ER + ++ D + +P V ATGW ARI QHE DHL GTLYVD++ K
Sbjct: 145 PGYQFPLERAPQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQK 200
>gi|418696315|ref|ZP_13257324.1| peptide deformylase [Leptospira kirschneri str. H1]
gi|409955844|gb|EKO14776.1| peptide deformylase [Leptospira kirschneri str. H1]
Length = 181
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 13/165 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + + EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDPILRKISEPITEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPDVPE-----------RIILNPIITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I + +D G G++A + QHECDHL G LYVD++
Sbjct: 114 RPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRL 158
>gi|384567627|ref|ZP_10014731.1| peptide deformylase [Saccharomonospora glauca K62]
gi|384523481|gb|EIF00677.1| peptide deformylase [Saccharomonospora glauca K62]
Length = 185
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 94/175 (53%), Gaps = 22/175 (12%)
Query: 81 AGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK 140
AGDPVLH P REV + + ++DDM + M +A GVGLAA QIGV LR+ V D
Sbjct: 9 AGDPVLHRPTREV---STYDDELATLVDDMFETMYAAEGVGLAANQIGVDLRVFVY-DCP 64
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVER 195
+ + K +++NPKL + +EGCLSV G R
Sbjct: 65 DDDGVRHKG-------------VVVNPKLTTSEIPETMPDPDDDWEGCLSVPGESYPTGR 111
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+VTG D +G PI+V+ TG+ AR LQHE DHLDG +Y+D++V + R + +
Sbjct: 112 ASWAKVTGFDVEGNPIEVEGTGFFARCLQHETDHLDGYIYLDRLVGRHARAAKKM 166
>gi|290562011|gb|ADD38403.1| Peptide deformylase, mitochondrial [Lepeophtheirus salmonis]
Length = 247
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 1/161 (0%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+VQ GDP+L E+ EI + I +I D ++ V++ VG++APQIG P+ + +
Sbjct: 41 VVQIGDPILRGKVEEIPLSEIKTPFINSIADKLLHVLKKYDAVGVSAPQIGTPIAMFAVG 100
Query: 138 DTKEYISYQSKEEIKAFDRRPFDL-LMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
TK I S E + P D +++NP++ ++ EGC S+ G+ A V RY
Sbjct: 101 FTKSQIKSWSTETVAKEGMEPIDPPRVVINPRIDIIDSSSSTHREGCCSLYGFSAQVARY 160
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ + G + G+ + AT W ARI+QHE DHL G L++D
Sbjct: 161 RKVLLKGYNIHGEAFEWLATDWTARIIQHEMDHLSGKLFID 201
>gi|258489222|gb|ACV72595.1| peptide deformylase [Pseudomonas syringae pv. cerasicola]
Length = 169
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 11/154 (7%)
Query: 84 PVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYI 143
P+L + + +VD + ++ ++ ++DDM + MR GVGLAAPQIGV RIIV+E
Sbjct: 11 PLLRKVSAQVD--KFSNDELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIE------ 62
Query: 144 SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTG 203
+ EE +A P +++NP + RT EGC SV G +V RY IE T
Sbjct: 63 -FSGNEE-RAPGESPVPPTVLINPVITSGVGRTE-GREGCFSVPGKIGIVPRYATIEYTA 119
Query: 204 LDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
D DG ++ A G+ ARI+QHE DHL+G LY+D
Sbjct: 120 QDMDGLNVRGKAEGFHARIIQHEVDHLNGILYID 153
>gi|408480261|ref|ZP_11186480.1| peptide deformylase [Pseudomonas sp. R81]
Length = 179
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++S E D P +++NP + S +EGCLSV G R V+RY
Sbjct: 64 -------GFESSERYP--DAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT-FRIVENL 250
I G D G+PI A G+ AR++QHECDHL G LY ++ T F +E +
Sbjct: 115 QQIRYEGFDPKGEPIVRIAEGFHARVVQHECDHLIGRLYPSRITDFTKFGFIEVM 169
>gi|398961098|ref|ZP_10678496.1| peptide deformylase [Pseudomonas sp. GM30]
gi|398153049|gb|EJM41556.1| peptide deformylase [Pseudomonas sp. GM30]
Length = 215
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 21/187 (11%)
Query: 53 RTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVK 112
RT AI LL N+ + I++ DP L A+ P + + ++ ++DDM +
Sbjct: 30 RTCQAIDPT--LLNTCSNQPMAILNILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFE 84
Query: 113 VMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKK 172
M APG+GLAA Q+ V RI+V++ +++ + E + F +NP+ +
Sbjct: 85 TMYEAPGIGLAATQVNVHKRIVVMDLSED------RTEPRVF----------INPEFESL 128
Query: 173 SDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232
+D + EGCLSV G+ V+R +++ LDRDGQP ++ A G A +QHECDHL+G
Sbjct: 129 TDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPYELVAEGLLAVCIQHECDHLNG 188
Query: 233 TLYVDKM 239
L+VD +
Sbjct: 189 KLFVDYL 195
>gi|421097432|ref|ZP_15558120.1| peptide deformylase [Leptospira borgpetersenii str. 200901122]
gi|410799555|gb|EKS01627.1| peptide deformylase [Leptospira borgpetersenii str. 200901122]
Length = 170
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+L + ++ V E+ ++ + +I DM MR A GVGLAAPQIG+ L+ IV+ ++E
Sbjct: 2 GDPILRQVSKPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGI-LKQIVVVGSEE 60
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
Y ++ +ILNP + + T+ F+EGCLSV G R VER I +
Sbjct: 61 NERYPGTPDVPE--------RVILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRM 112
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 113 QWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 163
>gi|395651808|ref|ZP_10439658.1| peptide deformylase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 179
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E D P +++NP + S FEGCLSV G R V RY
Sbjct: 64 -------GFEASERYP--DAEPVPQTILINPLITPLSPIMEEGFEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|389682056|ref|ZP_10173399.1| peptide deformylase [Pseudomonas chlororaphis O6]
gi|388553930|gb|EIM17180.1| peptide deformylase [Pseudomonas chlororaphis O6]
Length = 179
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S +EGCLSV G R VERY
Sbjct: 64 -------GFEHSERYPQAEAVPQTIL--INPLITPLSPVLEEGWEGCLSVPGLRGAVERY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QHIRYEGVDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRI 157
>gi|220906351|ref|YP_002481662.1| peptide deformylase [Cyanothece sp. PCC 7425]
gi|219862962|gb|ACL43301.1| peptide deformylase [Cyanothece sp. PCC 7425]
Length = 190
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 11/171 (6%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
Q K+ +I Q G+PVL + A+ V E+G +IQ +IDD++ ++ A GVGLAAPQ+G
Sbjct: 9 QASAGKVLDITQLGNPVLRQTAQFVP--EVGHPQIQTLIDDLLVTVKQANGVGLAAPQVG 66
Query: 129 VPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNG 188
+I ++ ++ Y E++ ++NP+L +D+ +EGCLS+ G
Sbjct: 67 ASWQIFIVA-SRPNPRYPHAPEMEP--------TAMINPRLLAHNDQQVKDWEGCLSIPG 117
Query: 189 YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R +V RY IEV LDR G+ + + ARI QHE DHL+G +++D++
Sbjct: 118 LRGLVPRYQGIEVEYLDRRGKTRRQQLHDFVARIFQHEQDHLNGVVFLDRL 168
>gi|375097420|ref|ZP_09743685.1| peptide deformylase [Saccharomonospora marina XMU15]
gi|374658153|gb|EHR52986.1| peptide deformylase [Saccharomonospora marina XMU15]
Length = 183
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 28/178 (15%)
Query: 81 AGDPVLHEPAREVDP--GEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE- 137
AGDPVLH P REVD GE+ + ++DDM + M +A GVGLAA QIGV LR+ V +
Sbjct: 9 AGDPVLHTPTREVDKFDGELAT-----LVDDMFETMYAAEGVGLAANQIGVDLRLFVYDC 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
E + ++ +++NP+L+ + +EGCLSV G
Sbjct: 64 PDDEGVRHKG---------------VVVNPRLETSQIPETMPDPDDDWEGCLSVPGESFP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
R +VTG D +G+PI+V TG+ AR LQHE DHLDG LY+D++V + R + +
Sbjct: 109 TGRADWAKVTGYDIEGRPIEVAGTGYFARCLQHETDHLDGYLYLDRLVGRHARAAKKM 166
>gi|398336920|ref|ZP_10521625.1| peptide deformylase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 178
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V E+ ++ + ++ DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDPLLRQVSEPVTEDEMQTKEFKKLLRDMFDTMRHADGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + ++ T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPDVPE-----------RVILNPIITPLTNDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 114 RPNKIRMQWMDEKGNRFDETIDGYKAVVYQHECDHLLGVLYVDRLKDTKLFGFNETLD 171
>gi|392381943|ref|YP_005031140.1| formylmethionine deformylase [Azospirillum brasilense Sp245]
gi|356876908|emb|CCC97701.1| formylmethionine deformylase [Azospirillum brasilense Sp245]
Length = 180
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 75 LPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
L +I + G PVL + A V DP + I+ + DM+ M APGVGLAAPQ+ LR+
Sbjct: 3 LLKIARMGHPVLRKVADPVPDPT---APEIRRLASDMIDTMLDAPGVGLAAPQVHESLRM 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
IV +S E +++NP ++ D EGCLS+ R VV
Sbjct: 60 IVFRVPAMRSGGESVEPT-----------VLINPVIEPLDDGVEHGMEGCLSIPELRGVV 108
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R+ I G+ DG+PI+ +A+G+ AR++QHECDHLDG LY+D+M
Sbjct: 109 PRFARIRYRGVGLDGEPIEREASGFHARVIQHECDHLDGVLYIDRM 154
>gi|182440102|ref|YP_001827821.1| polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326780771|ref|ZP_08240036.1| peptide deformylase [Streptomyces griseus XylebKG-1]
gi|178468618|dbj|BAG23138.1| putative polypeptide deformylase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326661104|gb|EGE45950.1| peptide deformylase [Streptomyces griseus XylebKG-1]
Length = 181
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+ GDP+LH P +V + G + +++DM M +A GVGLAA QIGVPL++ V
Sbjct: 15 EMSLLGDPLLHRPCEDVT--DFGPP-LAKLVEDMFATMYAAQGVGLAANQIGVPLKVFVY 71
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ ++++ ++NP+L + T EGCLS+ G A +R+
Sbjct: 72 D-------CPDDDDVRHLGH-------VVNPELVEADGLTVRGPEGCLSLPGLEAGTDRF 117
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
V GL G+P+++ TGW AR LQHECDHL+GT+Y D++
Sbjct: 118 DHAVVEGLTMTGEPVRIAGTGWFARCLQHECDHLEGTVYTDRLT 161
>gi|398834965|ref|ZP_10592359.1| peptide deformylase [Herbaspirillum sp. YR522]
gi|398219402|gb|EJN05883.1| peptide deformylase [Herbaspirillum sp. YR522]
Length = 178
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 89/161 (55%), Gaps = 11/161 (6%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I++ GDP L A+ V G+ + ++ DM + MR+ G GLAAPQIGV L+++
Sbjct: 3 LRDILKMGDPRLLRQAQPVT--AFGTPELTALVADMFETMRAVNGAGLAAPQIGVDLQLV 60
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+ + Q E A +++NP+L SD+ +EGCLSV G R VV
Sbjct: 61 IFG----FGQNQRYPEAPAVPET-----VLINPRLTPLSDQQEDGWEGCLSVPGLRGVVP 111
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R+ + G D DG+PI G+ AR++QHECDHL G LY
Sbjct: 112 RWTQLRYQGFDLDGEPIDRTVDGFHARVVQHECDHLAGILY 152
>gi|397695851|ref|YP_006533734.1| peptide deformylase [Pseudomonas putida DOT-T1E]
gi|421524043|ref|ZP_15970670.1| peptide deformylase [Pseudomonas putida LS46]
gi|397332581|gb|AFO48940.1| peptide deformylase [Pseudomonas putida DOT-T1E]
gi|402752288|gb|EJX12795.1| peptide deformylase [Pseudomonas putida LS46]
Length = 178
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +GS +Q +IDDM + MR GVGLAAPQIG+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYPDAEAVPQTIL--LNPVITPTSSEIEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHIGYQGIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|417777962|ref|ZP_12425774.1| peptide deformylase [Leptospira weilii str. 2006001853]
gi|410781932|gb|EKR66499.1| peptide deformylase [Leptospira weilii str. 2006001853]
Length = 170
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 13/160 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + ++ V E+ ++ + +I DM MR A GVGLAAPQIG+ +I+V+ ED
Sbjct: 2 GDPILRQVSKPVTDNELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y E +ILNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPGTPDVPE-----------RVILNPVITSLTKDTSGFWEGCLSVPGMRGYVERPNKI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ +D G G++A + QHECDHL G LYVD++
Sbjct: 111 RMQWMDERGNQFDETIDGYKAVVYQHECDHLSGILYVDRL 150
>gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium
leguminosarum bv. viciae 3841]
Length = 171
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPVLRQLSK---PIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDISREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +L+ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|383830121|ref|ZP_09985210.1| peptide deformylase [Saccharomonospora xinjiangensis XJ-54]
gi|383462774|gb|EID54864.1| peptide deformylase [Saccharomonospora xinjiangensis XJ-54]
Length = 185
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 94/175 (53%), Gaps = 22/175 (12%)
Query: 81 AGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK 140
AGDPVLH+P RE+ + + ++DDM + M +A GVGLAA QIGV LR+ V +
Sbjct: 9 AGDPVLHQPTREISTFDA---ELATLVDDMFETMYAAEGVGLAANQIGVDLRVFVYD--- 62
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVER 195
+E F +++NP L + +EGCLSV G R
Sbjct: 63 -----CPDDEGNRFKG------VVVNPALSTSEIPETMPDPDNDWEGCLSVPGESYPTGR 111
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
+VTG D +G PI+V+ TG+ AR LQHE DHLDG +Y+D++V + R + +
Sbjct: 112 ASWAKVTGFDVEGNPIEVEGTGYFARCLQHETDHLDGYIYLDRLVGRHARAAKKM 166
>gi|421128697|ref|ZP_15588909.1| peptide deformylase [Leptospira kirschneri str. 2008720114]
gi|410360107|gb|EKP07142.1| peptide deformylase [Leptospira kirschneri str. 2008720114]
Length = 170
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 92/173 (53%), Gaps = 14/173 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + + + EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+ ED
Sbjct: 2 GDPILRKISEPITEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y E +ILNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPGTPDVPE-----------RIILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNRI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+ +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 111 RMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 163
>gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|238058215|sp|B5YIL7.1|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 165
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 18/165 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + D VL + A + EI + +Q +ID+M++ M +A G+GLAAPQ+GV R+IV+
Sbjct: 5 EIKKYPDEVLKKKAETI--SEINGD-LQKLIDNMIETMYNANGIGLAAPQVGVLKRLIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
DT QS L++++NP++ S+ L EGCLS+ G+ ++R
Sbjct: 62 -DTSPREQNQS-------------LIVLINPEITD-SEGEILSEEGCLSLPGFTTRLKRK 106
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
+ V GLDR+G+ I+++ATG AR LQHE DHLDG L +DK+ P
Sbjct: 107 ERVIVKGLDRNGKEIEIEATGLLARALQHEIDHLDGILLIDKISP 151
>gi|434395515|ref|YP_007130462.1| Peptide deformylase [Gloeocapsa sp. PCC 7428]
gi|428267356|gb|AFZ33302.1| Peptide deformylase [Gloeocapsa sp. PCC 7428]
Length = 177
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 11/167 (6%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A++ E+VQ G P+L A++V+ I +RIQ ++DD++ + A GVG+AAPQ+ R
Sbjct: 2 AEIREVVQLGHPLLRTKAQDVE--NIRDQRIQTLVDDLIATVGQANGVGIAAPQVAEACR 59
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ ++ S+ + + D ++NPK+ S +EGCLS+ G R +
Sbjct: 60 LFIVA---------SRPNPRYPNAPTMDATAMINPKILAHSTEVVKGWEGCLSIPGIRGL 110
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V RY IEV DR+G+ K + T + ARI QHE DHLDG +++D++
Sbjct: 111 VPRYQAIEVEYSDRNGKLQKQELTDFVARIFQHELDHLDGIVFLDRL 157
>gi|336324720|ref|YP_004604686.1| peptide deformylase [Corynebacterium resistens DSM 45100]
gi|336100702|gb|AEI08522.1| peptide deformylase [Corynebacterium resistens DSM 45100]
Length = 222
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
Query: 78 IVQAGDPVLHEPAR--EVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
IV AGDPVLH P + E+ G+ S + +I+DM + M A GVGLAA Q+GV LR+ V
Sbjct: 6 IVIAGDPVLHNPTKPVELQEGKAPSAELTQLINDMYETMDRAHGVGLAANQVGVDLRLFV 65
Query: 136 LE--DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKS-----DRTALFFEGCLSVNG 188
D + + EE + P ++NP L+ + EGCLSV G
Sbjct: 66 YHCPDIEGADGERLTEEQIEANGGPMRRGCVINPTLETSDIPETMPDEEIDEEGCLSVPG 125
Query: 189 YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT 243
Y R VTGLD +GQPI V+ G+ AR LQHE HLDG LY D ++ +
Sbjct: 126 YSFPTGRADWARVTGLDENGQPITVEGYGFFARCLQHEVGHLDGFLYTDVLIGRN 180
>gi|399006834|ref|ZP_10709354.1| peptide deformylase [Pseudomonas sp. GM17]
gi|398121492|gb|EJM11120.1| peptide deformylase [Pseudomonas sp. GM17]
Length = 179
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S +EGCLSV G R VERY
Sbjct: 64 -------GFEHSERYPQAEAVPQTIL--INPLITPLSPVLEEGWEGCLSVPGLRGAVERY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QHIRYEGVDPRGEPIVRVASGFHARVVQHECDHLIGRLYPSRI 157
>gi|398345312|ref|ZP_10530015.1| peptide deformylase [Leptospira inadai serovar Lyme str. 10]
Length = 178
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V P E+ ++ + +I DM MR A GVGLAAPQIG+ +I+V
Sbjct: 5 KILKIGDPILRKISEPVHPDELQTKEFKKLIKDMFDTMRHAEGVGLAAPQIGILKQIVV- 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ KE+ R P + ILNP++ + +EGCLSV G R VER
Sbjct: 64 ------VGTDPKEDYPESSRVPERV--ILNPEITPLVESVDGNWEGCLSVPGMRGFVERP 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENLDL 252
I V +D G + G++A + QHECDHL G LYVD++ K F ++++L
Sbjct: 116 NKIRVIWMDEKGNRHEEVLQGYEAIVFQHECDHLKGVLYVDRLKSTKLFGFNDSMEL 172
>gi|330807956|ref|YP_004352418.1| peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423695745|ref|ZP_17670235.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
gi|327376064|gb|AEA67414.1| peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388008875|gb|EIK70126.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
Length = 179
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 DILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + + FEGCLSV G R VERY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLGPQMEEGFEGCLSVPGLRGAVERY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
DI G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QDIRYEGFDPKGEPIVRYASGFHARVVQHECDHLIGRLYPSRI 157
>gi|423096891|ref|ZP_17084687.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
gi|397885179|gb|EJL01662.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
Length = 179
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S ++ +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPVEMFDSPQLWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R VERY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPLMEEGFEGCLSVPGLRGAVERY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QHIRYEGFDPKGEPIVRTASGFHARVVQHECDHLIGRLYPSRI 157
>gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma whipplei TW08/27]
gi|39930875|sp|Q83HQ3.1|DEF_TROW8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|28410744|emb|CAD67130.1| peptide deformylase [Tropheryma whipplei TW08/27]
Length = 201
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
K+ I G VLH PA+ V IQ I+ DM M +APGVGLA PQIG+ LR
Sbjct: 7 GKILPIYITGHAVLHAPAKPV----TDFSGIQEIVRDMFATMFAAPGVGLAGPQIGLGLR 62
Query: 133 IIVLEDTKEYISYQS---KEEI---KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
I V T+ +Q ++ K +R N + DR EGCLS
Sbjct: 63 IFVYSYTEGDTLHQGVAINPDLLIPKGVPKRQTHKQQANNSTSCDEPDR-----EGCLSF 117
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
GY+ +ER + ++ D + +P V ATGW ARI QHE DHL GTLYVD++ K
Sbjct: 118 PGYQFPLERAPQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQK 173
>gi|148546572|ref|YP_001266674.1| peptide deformylase [Pseudomonas putida F1]
gi|395447840|ref|YP_006388093.1| peptide deformylase [Pseudomonas putida ND6]
gi|148510630|gb|ABQ77490.1| peptide deformylase [Pseudomonas putida F1]
gi|388561837|gb|AFK70978.1| peptide deformylase [Pseudomonas putida ND6]
Length = 178
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V GS +Q +IDDM + MR GVGLAAPQIG+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMFGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYPDAEAVPQTIL--LNPVITPTSSEIEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHIGYQGIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|257486818|ref|ZP_05640859.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|422598386|ref|ZP_16672648.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422680943|ref|ZP_16739214.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|330988665|gb|EGH86768.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331010288|gb|EGH90344.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 179
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS ++ +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPADMFGSSKLNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + S +EGCLSV G R +V RY
Sbjct: 64 ------GFERSERYPQAEAVPQTIL--LNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D +GQP++ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|162148854|ref|YP_001603315.1| peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5]
gi|209545397|ref|YP_002277626.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
gi|161787431|emb|CAP57026.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533074|gb|ACI53011.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
Length = 176
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 93/167 (55%), Gaps = 12/167 (7%)
Query: 75 LPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
L +I + G PVL A EV DP + I +IDDM++ M A G GLAAPQ+ V LR+
Sbjct: 3 LLKIARMGHPVLLRRADEVADPT---APDIARLIDDMIETMEDARGAGLAAPQVHVSLRL 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
++ E D P + +++NP L D AL EGCLS+ G R +V
Sbjct: 60 --------FVYRVPAERSAGGDDPPRETSVLINPVLSLVDDEMALRPEGCLSIPGLRGMV 111
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
R++ I +GLDR GQ ++ A+G+ A +LQHE DHLDG LY +M
Sbjct: 112 PRHVRIAYSGLDRAGQAVQGVASGFLANVLQHEYDHLDGILYPMRMT 158
>gi|422586228|ref|ZP_16661225.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330880564|gb|EGH14713.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
Length = 169
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 11/154 (7%)
Query: 84 PVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYI 143
P+L + + +VD + + ++ ++DDM + MR GVGLAAPQIGV RIIV+E
Sbjct: 11 PLLRKVSAQVD--KFSNGELRTLVDDMFETMRDGNGVGLAAPQIGVDARIIVIE------ 62
Query: 144 SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTG 203
+ EE +A P +++NP + RT EGC SV G +V RY IE T
Sbjct: 63 -FSGNEE-RAPGESPVPPTVLINPVITSGVGRTE-GREGCFSVPGKIGIVPRYATIEYTA 119
Query: 204 LDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
D DG ++ A G+ ARI+QHE DHL+G LY+D
Sbjct: 120 QDMDGLNVRGKAEGFHARIIQHEVDHLNGILYID 153
>gi|425901040|ref|ZP_18877631.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397882994|gb|EJK99480.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 179
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S +EGCLSV G R VERY
Sbjct: 64 -------GFEHSERYPQAEAVPQTIL--INPLITPLSPVLEEGWEGCLSVPGLRGAVERY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QHIRYEGVDPRGEPIVRLASGFHARVVQHECDHLIGRLYPSRI 157
>gi|396584357|ref|ZP_10484829.1| peptide deformylase [Actinomyces sp. ICM47]
gi|395548007|gb|EJG15363.1| peptide deformylase [Actinomyces sp. ICM47]
Length = 212
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 98/190 (51%), Gaps = 41/190 (21%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH R DP E +++++ +M++ M +APGVGLAAPQ+GV L++ V
Sbjct: 6 ICITGEPVLH---RVADPVESFDSTLRDLVANMIETMHAAPGVGLAAPQVGVGLQLFVW- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL----------------MILNPKLKKKSDRTALFF- 180
SY+ AFDRR D+L +++NP L+ D +
Sbjct: 62 ------SYRGG---GAFDRRYKDILGVDDGAARGYNSAMSGVVVNPTLELVWDNDGVGAI 112
Query: 181 -----------EGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDH 229
EGCLSV G + + R L + G D DG ++V A GW ARI QHE DH
Sbjct: 113 LPTQPDMTNESEGCLSVPGVQYPLRRALGAILRGYDADGNVVRVAARGWLARIFQHEYDH 172
Query: 230 LDGTLYVDKM 239
L GTLYVD++
Sbjct: 173 LRGTLYVDRL 182
>gi|405377555|ref|ZP_11031496.1| peptide deformylase [Rhizobium sp. CF142]
gi|397325992|gb|EJJ30316.1| peptide deformylase [Rhizobium sp. CF142]
Length = 171
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E +Q + DDM++ M APG+GLAA Q+GVP R++V++ +KE
Sbjct: 11 DPVLRQVSK---PIERVDADLQRLTDDMLETMYDAPGIGLAAIQVGVPRRMLVIDLSKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NP++ SD +++ EGCLS+ Y A VER + V
Sbjct: 67 ----------GEEKQP---LVFINPEIVSSSDDRSVYEEGCLSIPDYYAEVERPAKVTVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDREGKEQSVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|409422749|ref|ZP_11259833.1| peptide deformylase [Pseudomonas sp. HYS]
Length = 179
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V IGS ++ +I DM + M GVGLAAPQIGV L++++
Sbjct: 4 DILKMGDERLLRIAPPVPQHMIGSAELERLIADMFETMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV RY
Sbjct: 64 -------GFERSERYPEAEAVPRTIL--LNPLITPLSTEVEDGWEGCLSVPGLRGVVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D GQPI +A G+ AR++QHECDHL G LY ++
Sbjct: 115 QRIRYEGVDPQGQPIVRNAEGFHARVVQHECDHLIGRLYPSRI 157
>gi|410448937|ref|ZP_11303007.1| peptide deformylase [Leptospira sp. Fiocruz LV3954]
gi|418744111|ref|ZP_13300467.1| peptide deformylase [Leptospira santarosai str. CBC379]
gi|418751971|ref|ZP_13308243.1| peptide deformylase [Leptospira santarosai str. MOR084]
gi|409967700|gb|EKO35525.1| peptide deformylase [Leptospira santarosai str. MOR084]
gi|410017279|gb|EKO79341.1| peptide deformylase [Leptospira sp. Fiocruz LV3954]
gi|410794562|gb|EKR92462.1| peptide deformylase [Leptospira santarosai str. CBC379]
gi|456873843|gb|EMF89189.1| peptide deformylase [Leptospira santarosai str. ST188]
Length = 170
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 14/173 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + + V E+ ++ + +I DM M A GVGLAAPQIG+ RI+V+ ED
Sbjct: 2 GDPILRQVSEPVAENELQTKEFKKLIRDMFDTMHHAEGVGLAAPQIGILKRIVVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y + E +ILNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPGTPNVPE-----------RVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+ +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 111 RMQWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 163
>gi|26991243|ref|NP_746668.1| peptide deformylase [Pseudomonas putida KT2440]
gi|32363154|sp|Q88EA7.1|DEF2_PSEPK RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase [Pseudomonas putida KT2440]
Length = 178
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +GS +Q +IDDM + MR GVGLAAPQ+G+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYPDAEAVPQTIL--LNPVITPTSSEVEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHICYQGIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|422658716|ref|ZP_16721148.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331017341|gb|EGH97397.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 179
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS ++ +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + +EGCLSV G R +V+RY
Sbjct: 64 ------GFERSERYPQAEAVPQTIL--LNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D DGQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|383808820|ref|ZP_09964352.1| peptide deformylase [Rothia aeria F0474]
gi|383448346|gb|EID51311.1| peptide deformylase [Rothia aeria F0474]
Length = 190
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 22/170 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV G+PVLH PA V + E+++ +I DM + M ++ GVGLAAPQIGV LR+
Sbjct: 6 IVIHGNPVLHRPAAPVTAFD---EQLKELIADMYETMDASHGVGLAAPQIGVGLRLF--- 59
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNP-----KLKKKSDRTALFFEGCLSVNGYRAV 192
+YQ + E R +++NP K+ EGCLS GY
Sbjct: 60 ------TYQMENEDGVPPRG-----VVVNPVLTLGKISGADPDPDTEEEGCLSFPGYGFP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
++R + VTG D +G P++ +ATGW AR +QHE DHLDG LYV+++ K
Sbjct: 109 LKRAEWVTVTGFDGEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNKK 158
>gi|407783702|ref|ZP_11130898.1| peptide deformylase [Oceanibaculum indicum P24]
gi|407200298|gb|EKE70307.1| peptide deformylase [Oceanibaculum indicum P24]
Length = 178
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 82 GDPVLHEPAREVDPGE-IGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK 140
G PVL AR DP + S I +++D+ + + G GLAAPQIGVPLR+++
Sbjct: 2 GHPVL---ARIADPVQNPASPAIAALVEDLKDSLAAVGGTGLAAPQIGVPLRVVIF---- 54
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
+ A D +P +L+ ++NP++ D AL +EGCLS+ G R V R I
Sbjct: 55 ---AVPPHRTTGAPDDQPQELIELINPEIAPLGDEIALGWEGCLSIPGMRGEVPRPARIR 111
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP-KTFRIVENL 250
GL DG ++ + G+ AR++QHECDHLDG LY +M ++F + L
Sbjct: 112 YRGLRLDGTMVEREVGGFHARVVQHECDHLDGMLYPMRMTDMRSFGFTDEL 162
>gi|421109095|ref|ZP_15569620.1| peptide deformylase [Leptospira kirschneri str. H2]
gi|410005779|gb|EKO59565.1| peptide deformylase [Leptospira kirschneri str. H2]
Length = 170
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 14/173 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + + + EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+ ED
Sbjct: 2 GDPILRKISEPITEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y E ++LNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPGTPDVPE-----------RIVLNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNRI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+ +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 111 RMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 163
>gi|398852353|ref|ZP_10609013.1| peptide deformylase [Pseudomonas sp. GM80]
gi|398244259|gb|EJN29818.1| peptide deformylase [Pseudomonas sp. GM80]
Length = 179
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFNSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
E ++ Y ++ + + L+ LNP +++ FEGCLSV G R V+
Sbjct: 64 GFEHSERYPDAEAVPQTILIN----PLITPLNPLMEEG-------FEGCLSVPGLRGAVD 112
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
R+ I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 113 RFQQIRYEGFDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213969590|ref|ZP_03397726.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|301383364|ref|ZP_07231782.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
gi|302058804|ref|ZP_07250345.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
gi|302134493|ref|ZP_07260483.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|32363152|sp|Q886I1.1|DEF2_PSESM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213925686|gb|EEB59245.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
Length = 179
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS ++ +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + +EGCLSV G R +V+RY
Sbjct: 64 ------GFERSERYPQAEAVPQTIL--LNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D DGQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|422297612|ref|ZP_16385244.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
gi|422654372|ref|ZP_16717116.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330967399|gb|EGH67659.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407990917|gb|EKG32894.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
Length = 179
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS ++ +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + +EGCLSV G R +V+RY
Sbjct: 64 ------GFERSERYPQAEAVPQTIL--LNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D DGQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|386010946|ref|YP_005929223.1| Def_2 [Pseudomonas putida BIRD-1]
gi|313497652|gb|ADR59018.1| Def_2 [Pseudomonas putida BIRD-1]
Length = 178
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +GS +Q +IDDM + MR GVGLAAPQ+G+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYPDAEAVPQTIL--LNPVITPTSSEVEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHICYQGIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|340786487|ref|YP_004751952.1| peptide deformylase [Collimonas fungivorans Ter331]
gi|340551754|gb|AEK61129.1| Peptide deformylase [Collimonas fungivorans Ter331]
Length = 178
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V G+ ++ +I DM M +A G GLAAPQIGV L++++
Sbjct: 5 EILKMGDPRLLRQAEPVT--AFGTPELEALIADMFDTMYAANGAGLAAPQIGVNLQLVI- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ K ++ D +++NP L+ SD T +EGCLSV G R VV R+
Sbjct: 62 --------FGFKNNVRYPDAPAVPETVLINPVLRPLSDDTEDGWEGCLSVPGLRGVVPRW 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D+ G I D G+ AR++QHE DHL+G LY
Sbjct: 114 TSLHYEGFDQTGAAISRDVDGFHARVVQHETDHLNGILY 152
>gi|424898026|ref|ZP_18321600.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182253|gb|EJC82292.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 171
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPILRQASK---PIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSIYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|398940215|ref|ZP_10669107.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
gi|398163150|gb|EJM51321.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
Length = 179
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPTLEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D GQPI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QHIRYEGFDPKGQPIVRIASGFHARVVQHECDHLIGRLYPSRI 157
>gi|339326125|ref|YP_004685818.1| peptide deformylase 1 [Cupriavidus necator N-1]
gi|338166282|gb|AEI77337.1| peptide deformylase 1 [Cupriavidus necator N-1]
Length = 177
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 95/176 (53%), Gaps = 27/176 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L + AR V+ + ++ +I+DM M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLQVARPVE--RFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
FDR P +++NP L+ +SD +EGCLSV G
Sbjct: 62 ----------------GFDRNPRYPDAPTVPKTVLINPVLEMESDEMEDGWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
R VV R+L ++ +G D G I+ A G+ AR++QHECDHL G LY M K FR
Sbjct: 106 RGVVPRHLRLKYSGYDLMGNRIERVAEGFHARVVQHECDHLQGILY--PMRIKDFR 159
>gi|194289796|ref|YP_002005703.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
gi|193223631|emb|CAQ69638.1| putative POLYPEPTIDE DEFORMYLASE PROTEIN [Cupriavidus taiwanensis
LMG 19424]
Length = 177
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 91/166 (54%), Gaps = 25/166 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L + AR V+ + ++ +I+DM M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLQVARPVE--RFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
FDR P +++NP L+ +SD +EGCLSV G
Sbjct: 62 ----------------GFDRNPRYPDAPTVPKTVLINPVLEMQSDEMEDGWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R VV R+L ++ +G D G I+ A G+ AR++QHECDHL G LY
Sbjct: 106 RGVVPRHLRLKYSGYDLMGNRIERVAEGFHARVVQHECDHLQGILY 151
>gi|253999126|ref|YP_003051189.1| peptide deformylase [Methylovorus glucosetrophus SIP3-4]
gi|253985805|gb|ACT50662.1| peptide deformylase [Methylovorus glucosetrophus SIP3-4]
Length = 177
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GDP+L + A V + + +I DM M G G+AAPQIGV LR+++
Sbjct: 6 VLRMGDPLLLQKAAPVT--AFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVIFG 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
K Y E++ P+ +L +NP L+ +D +EGCLSV G R +V RY+
Sbjct: 64 VGKN-PRYPDAEQV------PYTVL--VNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYV 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ TG D+ G PI +G+ AR++QHECDHLDG LY
Sbjct: 115 RLHYTGFDQYGNPIDRLVSGFHARVVQHECDHLDGILY 152
>gi|389756174|ref|ZP_10191406.1| peptide deformylase [Rhodanobacter sp. 115]
gi|388431872|gb|EIL88916.1| peptide deformylase [Rhodanobacter sp. 115]
Length = 178
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V IGS + +I DM M +A GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRVAPPVPDAMIGSAELDALIADMFDTMHAADGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP + S +EGCLSV G R V RY
Sbjct: 64 -------GFEHSERYPDAPEVPQTIL--LNPAITPLSQDMEEGWEGCLSVPGLRGAVSRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I GLD G I A G+ AR++QHECDHL G LY ++
Sbjct: 115 TLIRYQGLDPKGAKIDRTAEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|418407893|ref|ZP_12981210.1| peptide deformylase [Agrobacterium tumefaciens 5A]
gi|358005879|gb|EHJ98204.1| peptide deformylase [Agrobacterium tumefaciens 5A]
Length = 170
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + +R P E + + DDM++ M APG+GLAA Q+GVP R++V++ ++E
Sbjct: 11 DPVLRQQSR---PIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLVIDVSRE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
EE ++P ++ +NP++ K SD + + EGCLS+ Y A VER + V
Sbjct: 67 -----DEE-----KKP---VVFINPEILKVSDDVSAYEEGCLSIPDYYAEVERPASLTVR 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
+DRDG+ VDA G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YVDRDGKQQTVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKF 162
>gi|422644075|ref|ZP_16707213.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330957627|gb|EGH57887.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 179
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS + +I DM + M S GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDERLLRIAPPVPTEMFGSSELNTLIADMFETMHSVSGVGLAAPQIGVDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + S +EGCLSV G R +V+RY
Sbjct: 64 ------GFERNERYPQAEAVPQTIL--LNPVITPLSPELEEGWEGCLSVPGLRGMVDRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D +G+PI+ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPEGKPIERIAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 171
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPILRQASK---PIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 FLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|167035061|ref|YP_001670292.1| peptide deformylase [Pseudomonas putida GB-1]
gi|166861549|gb|ABY99956.1| peptide deformylase [Pseudomonas putida GB-1]
Length = 178
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +G+ +Q +IDDM + MR GVGLAAPQIG+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMLGTAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYPDAEAVPQTIL--LNPVITPTSSEVEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHICYEGIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|70731936|ref|YP_261678.1| peptide deformylase [Pseudomonas protegens Pf-5]
gi|68346235|gb|AAY93841.1| peptide deformylase [Pseudomonas protegens Pf-5]
Length = 179
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWELIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S +EGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPEAEAVPQTIL--INPLITPLSPVLEEGWEGCLSVPGLRGAVQRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QHIRYEGFDPRGEPIVRVASGFHARVVQHECDHLIGRLYPSRI 157
>gi|424915776|ref|ZP_18339140.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392851952|gb|EJB04473.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 171
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPILRQASK---PIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|408533579|emb|CCK31753.1| Peptide deformylase 2 [Streptomyces davawensis JCM 4913]
Length = 179
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 17/164 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH PA++V + G E + +++DM M +A GVGLAA Q+G PLR+ V + +
Sbjct: 20 GDPVLHAPAKDVT--DFGPE-LAALVEDMFATMYAAQGVGLAANQVGEPLRVFVYDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ L ++NP+L EGCLS+ G A ERY V
Sbjct: 77 -------EDVR-------HLGHVVNPRLVTADGVVIRGPEGCLSLPGLEAGTERYDHAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
G G+P+ V TG+ AR LQHECDH++GT+Y D++ + R
Sbjct: 123 EGFTVTGEPVTVHGTGFFARCLQHECDHVEGTVYADRVEGRRHR 166
>gi|423693213|ref|ZP_17667733.1| peptide deformylase [Pseudomonas fluorescens SS101]
gi|387998618|gb|EIK59947.1| peptide deformylase [Pseudomonas fluorescens SS101]
Length = 179
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E D P +++NP + S +EGCLSV G R V RY
Sbjct: 64 -------GFEASERYP--DAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRIT 158
>gi|451337450|ref|ZP_21907994.1| Peptide deformylase [Amycolatopsis azurea DSM 43854]
gi|449419919|gb|EMD25436.1| Peptide deformylase [Amycolatopsis azurea DSM 43854]
Length = 190
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 96/178 (53%), Gaps = 22/178 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG+PVLH P RE+ + +++ ++DDM + M +A GVGLAA QIG+ R+ V +
Sbjct: 6 IVIAGEPVLHNPTREITEFDA---KLRTLVDDMFETMYAAEGVGLAANQIGLDQRVFVYD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
+ + +++NPKL+ + +EGCLS G
Sbjct: 63 CPDDEGTRHKG--------------VVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
R +VTG D DG PI+V+ TG+ AR LQHE DHLDG +Y+D++V + R + +
Sbjct: 109 TGRASWAKVTGFDVDGNPIEVEGTGYLARCLQHETDHLDGFIYLDRLVGRHARAAKKM 166
>gi|392952705|ref|ZP_10318260.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
gi|391861667|gb|EIT72195.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
Length = 176
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GD L +R V+ G+ ++ ++ DM MR+ G GLAAPQIGV LR+++
Sbjct: 5 VLRMGDARLLRVSRPVE--RFGTPELRELVADMFDTMRALNGAGLAAPQIGVDLRVVIFG 62
Query: 138 DTKE--YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
T Y + Q+ E +++NP L SD +EGCLSV G R VV R
Sbjct: 63 FTSSPRYPNAQAVPET-----------ILINPVLTPLSDEQEEGWEGCLSVPGLRGVVPR 111
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
Y + TG D G I + G+ AR++QHECDHLDG LY
Sbjct: 112 YQRLRYTGFDLHGDVIDRNVDGFHARVVQHECDHLDGILY 151
>gi|388467866|ref|ZP_10142076.1| peptide deformylase [Pseudomonas synxantha BG33R]
gi|388011446|gb|EIK72633.1| peptide deformylase [Pseudomonas synxantha BG33R]
Length = 179
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E + P +++NP + S FEGCLSV G R V RY
Sbjct: 64 -------GFEASERYP--EAPPVPQTILINPLITPLSPVLEEGFEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRIT 158
>gi|293189708|ref|ZP_06608424.1| peptide deformylase [Actinomyces odontolyticus F0309]
gi|292821298|gb|EFF80241.1| peptide deformylase [Actinomyces odontolyticus F0309]
Length = 212
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 97/184 (52%), Gaps = 29/184 (15%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH A +D + +++++ DM++ M +APGVGLAAPQ+GV ++ V
Sbjct: 6 ICITGEPVLHRAAAPIDSFD---SELRDLVADMIETMHAAPGVGLAAPQVGVGSQVFVWR 62
Query: 138 -------DTKEYISYQSKEEIKAFDRRPFDLLM---ILNPKLKKKSDR------------ 175
DT+ Y+ ++ R F+ ++ ++NP L D
Sbjct: 63 YGGAGSFDTQ----YRDVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPD 118
Query: 176 TALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
AL EGCLSV GY + R L + G D DG I+V A GW ARI QHE DHL GTLY
Sbjct: 119 IALESEGCLSVPGYGYPLRRALGAILRGYDVDGNAIEVRARGWLARIFQHEYDHLQGTLY 178
Query: 236 VDKM 239
VD++
Sbjct: 179 VDRL 182
>gi|414343365|ref|YP_006984886.1| polypeptide deformylase [Gluconobacter oxydans H24]
gi|411028700|gb|AFW01955.1| polypeptide deformylase [Gluconobacter oxydans H24]
Length = 170
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 75 LPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
L +I + G PVLH+ A V DP + I+ +I DM++ M A G GLAAPQ+ VPLR+
Sbjct: 3 LLKIARMGHPVLHQIAEPVSDPT---APEIRRLIKDMLETMADARGAGLAAPQVHVPLRL 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
+ +S + + +++NP++ D L EGCLS+ G R V
Sbjct: 60 FIYHVPANRVSDPEQAMLPR---------VLINPEIIPVGDEMMLCSEGCLSIPGLRGDV 110
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
RY + GLD +G P++ +A G+ A +LQHE DHLDG LY ++
Sbjct: 111 PRYAKVRYRGLDENGDPVEGEAVGFHANVLQHENDHLDGVLYPQRI 156
>gi|74316798|ref|YP_314538.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
gi|74056293|gb|AAZ96733.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
25259]
Length = 177
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+++ GDP L PAR V+ + + ++ DM MR+ G GLAAPQIGV L++++
Sbjct: 5 EVLKMGDPRLLAPARAVE--RFATAELAQLVADMHDTMRALNGAGLAAPQIGVSLQVVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E Y E+ L +++NP + SD T +EGCLSV G R +V R+
Sbjct: 63 E-VNANPRYPDAAEVP--------LTVLVNPVVTPLSDATEEGWEGCLSVPGMRGLVPRH 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+I G D G+ ++ +G+ AR++QHE DHL+G LY
Sbjct: 114 GEIHYRGFDAAGRALERRVSGFHARVVQHEVDHLNGILY 152
>gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium hydrogeniformans]
gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium hydrogeniformans]
Length = 150
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 104/167 (62%), Gaps = 25/167 (14%)
Query: 74 KLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
KL EI GDPVL A++VD +I + IQ +ID+M + M + GVGLAAPQ+G+ RI
Sbjct: 5 KLREI---GDPVLRSKAKKVD--KITPKTIQ-LIDNMFETMYAEEGVGLAAPQVGILKRI 58
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
V++ I +K ++++NP++ +++ + + EGCLS+ G V
Sbjct: 59 AVID-----IGEGNK-------------IVLINPEIIEENGKM-IMEEGCLSIPGRTGEV 99
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
R +I+V+ L+RDG+ I++ A G++AR +QHE DHLDG L++DKMV
Sbjct: 100 IRSKEIKVSSLNRDGEEIEIIAEGFEARAIQHEIDHLDGVLFIDKMV 146
>gi|417858747|ref|ZP_12503804.1| peptide deformylase [Agrobacterium tumefaciens F2]
gi|338824751|gb|EGP58718.1| peptide deformylase [Agrobacterium tumefaciens F2]
Length = 170
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + +R P E + + DDM++ M APG+GLAA Q+GVP R++V++ ++E
Sbjct: 11 DPVLRQQSR---PIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLVIDVSRE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
EE ++P ++ +NP++ K SD + + EGCLS+ Y A VER + V
Sbjct: 67 -----DEE-----KKP---VVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVR 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+DRDG+ VDA G A LQHE DHL+G L++D +
Sbjct: 114 YVDRDGKQQTVDADGLLATCLQHEIDHLNGILFIDHI 150
>gi|408794144|ref|ZP_11205749.1| peptide deformylase [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408461379|gb|EKJ85109.1| peptide deformylase [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 179
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 9/176 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ G+P+L + + +V EI ++ + +I DM + MR A GVGLAAPQIGV +++V+
Sbjct: 5 KILKIGNPLLRQTSEDVTESEIQTKDFKKLIRDMFETMRHAEGVGLAAPQIGVMKKLVVV 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ Y E+ +ILNP++ S F+EGCLSV G R VER
Sbjct: 65 GQDDDNGRYPGTPEVPN--------QIILNPEITPLSPPGEGFWEGCLSVPGMRGFVERP 116
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENLD 251
I + D + + TG++A +LQHECDHL G LYVD++ K F E++D
Sbjct: 117 DKIRMKWRDENFVEHEEIITGYRAIVLQHECDHLFGVLYVDRLKSTKLFGYNEDID 172
>gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42]
gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42]
Length = 171
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPVLRQLSK---PIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDREGKEQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|312962671|ref|ZP_07777160.1| peptide deformylase [Pseudomonas fluorescens WH6]
gi|311283046|gb|EFQ61638.1| peptide deformylase [Pseudomonas fluorescens WH6]
Length = 179
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E D P +++NP + S +EGCLSV G R V RY
Sbjct: 64 -------GFEASERYP--DAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRIT 158
>gi|424873417|ref|ZP_18297079.1| peptide deformylase [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393169118|gb|EJC69165.1| peptide deformylase [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 171
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPVLRQLSK---PIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDISREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVAVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|71737618|ref|YP_273728.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416015116|ref|ZP_11562776.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|71558171|gb|AAZ37382.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320325402|gb|EFW81467.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
Length = 179
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS + +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + S +EGCLSV G R +V RY
Sbjct: 64 ------GFERSERYPQAEAVPQTIL--LNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D +GQP++ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|452825653|gb|EME32648.1| peptide deformylase [Galdieria sulphuraria]
Length = 269
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 16/166 (9%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+V+ DP L + EVDP + I M +VM + GVGLAAPQ+G+ R++V
Sbjct: 96 EVVKYPDPRLRKENEEVDPCH---PSVGEIARKMFQVMYADRGVGLAAPQVGINQRLMVY 152
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
T + S+ S+ ++++NPK+ SD+ + EGCLS G V R+
Sbjct: 153 NPTGKPSSFLSQ-------------VVMVNPKIVDCSDKKVVDLEGCLSFPGIAGKVSRH 199
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
+ V G+ IK+ GWQARI QHE DHLDG L++D+M P+
Sbjct: 200 EWVRVEAFKPGGKKIKLKLEGWQARIFQHEYDHLDGILFIDRMEPE 245
>gi|398912837|ref|ZP_10656160.1| peptide deformylase [Pseudomonas sp. GM49]
gi|398181700|gb|EJM69252.1| peptide deformylase [Pseudomonas sp. GM49]
Length = 179
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRVAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPTLEEGFEGCLSVPGLRGAVQRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGVDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|126348457|emb|CAJ90180.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
23877]
Length = 240
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 17/159 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P EV + G E + +++D+ M +A GVGLAA QIG P+R+ V
Sbjct: 59 GDPVLHAPCEEVT--DFGPE-LAALVEDLFATMYAAHGVGLAANQIGEPVRVFV------ 109
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
Y ++E L ++NP+L + EGCLS+ G A ER+ + V
Sbjct: 110 YDCPDDEDERH--------LGHVVNPRLVETGGVVVRGAEGCLSLPGLEAGTERHDEAVV 161
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
TG G+P+ V TG+ AR LQHECDHL+G +YVD++
Sbjct: 162 TGFTVTGEPVTVRGTGFFARCLQHECDHLEGGIYVDRLT 200
>gi|374586242|ref|ZP_09659334.1| Peptide deformylase [Leptonema illini DSM 21528]
gi|373875103|gb|EHQ07097.1| Peptide deformylase [Leptonema illini DSM 21528]
Length = 184
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++AG+P+L + ++E EI S +I DM M A G GLAAPQIGV R++++
Sbjct: 6 ILRAGNPLLRKRSQEFTEEEIRSPETAALIADMFDTMEKAHGQGLAAPQIGVLKRLVIVR 65
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+E S + ++E DR ++ NP+++ +EGCLSV G VER
Sbjct: 66 LFREEGSGRDRQE-SFIDR------VLFNPQIEILEGSKLGSWEGCLSVPGMAGYVERKR 118
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
I +T LD + + G+ A + QHECDHLDG LYVD++ P+ F E+LD
Sbjct: 119 RIRLTFLDETARKHEELVEGYDAVVYQHECDHLDGVLYVDRLADPRLFGFDEDLD 173
>gi|424879774|ref|ZP_18303406.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WU95]
gi|392516137|gb|EIW40869.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WU95]
Length = 171
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPVLRQLSK---PIERLDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDISREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|398999648|ref|ZP_10702383.1| peptide deformylase [Pseudomonas sp. GM18]
gi|398131270|gb|EJM20589.1| peptide deformylase [Pseudomonas sp. GM18]
Length = 179
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPLMEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIMRIASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|113868038|ref|YP_726527.1| peptide deformylase [Ralstonia eutropha H16]
gi|113526814|emb|CAJ93159.1| polypeptide or peptide deformylase [Ralstonia eutropha H16]
Length = 177
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 95/176 (53%), Gaps = 27/176 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L + AR V+ + ++ +I+DM M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLQVARPVE--RFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
FDR P +++NP L+ +SD +EGCLSV G
Sbjct: 62 ----------------GFDRNPRYPDAPTVPKTVLINPVLEMESDEMEDGWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
R VV R+L ++ +G D G I+ A G+ AR++QHECDHL G LY M K FR
Sbjct: 106 RGVVPRHLRLKYSGHDLMGNRIERVAEGFHARVVQHECDHLQGILY--PMRIKDFR 159
>gi|418718317|ref|ZP_13277853.1| peptide deformylase [Leptospira borgpetersenii str. UI 09149]
gi|421093287|ref|ZP_15554012.1| peptide deformylase [Leptospira borgpetersenii str. 200801926]
gi|410363899|gb|EKP14927.1| peptide deformylase [Leptospira borgpetersenii str. 200801926]
gi|410744926|gb|EKQ93659.1| peptide deformylase [Leptospira borgpetersenii str. UI 09149]
gi|456890067|gb|EMG00925.1| peptide deformylase [Leptospira borgpetersenii str. 200701203]
Length = 170
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + + V E+ ++ + +I DM MR A GVGLAAPQIG+ +IIV+ ED
Sbjct: 2 GDPILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIIVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y + + E +ILNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPNTPNVPE-----------RVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+ +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 111 RMQWMDEKGGQFDEIIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 163
>gi|398347290|ref|ZP_10531993.1| peptide deformylase [Leptospira broomii str. 5399]
Length = 178
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V P E+ ++ + ++ DM MR A GVGLAAPQIG+ +++V
Sbjct: 5 KILKIGDPILRKISEPVHPDELQTKEFKKLVKDMFDTMRHAEGVGLAAPQIGILKQMVV- 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ KE+ R P + ILNP++ + +EGCLSV G R VER
Sbjct: 64 ------VGTDPKEDYPESSRVPERV--ILNPEITPLVESVDGNWEGCLSVPGMRGFVERP 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENLDL 252
I V +D G + G++A + QHECDHL G LYVD++ K F ++++L
Sbjct: 116 NKIRVIWMDEKGNRHEEVLQGYEAIVFQHECDHLKGVLYVDRLKSTKLFGFNDSMEL 172
>gi|257068452|ref|YP_003154707.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
4810]
gi|256559270|gb|ACU85117.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM
4810]
Length = 240
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 7/140 (5%)
Query: 110 MVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI-KAFDRRPFDLLMILNPK 168
M MR+APGVGLAAPQ+G+PL V+ED Y ++E+ +RRP L +L+P
Sbjct: 67 MTVTMRAAPGVGLAAPQVGLPLSFYVIED--RYADEPGEDEVGDLLERRPLPLRALLDPV 124
Query: 169 LKKKSDRTALFFEGCLSVNGYRAVV--ERYLDIEVTGLDRDG--QPIKVDATGWQARILQ 224
L+ + FEGCLSV+G++++V R + + T L DG + ++ + GW ARILQ
Sbjct: 125 LEPLGTQRVYAFEGCLSVDGWQSIVPRSRRVLLRATELLGDGSLREVEEEHVGWTARILQ 184
Query: 225 HECDHLDGTLYVDKMVPKTF 244
HE DHL GTL D VP+++
Sbjct: 185 HETDHLAGTLCHDLCVPRSY 204
>gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong]
gi|158514262|sp|A5CF65.1|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong]
Length = 181
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 8/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V A DP+L + + VD ++ I+ +IDDM++ M GVGLAAPQ+ V RIIVL+
Sbjct: 6 LVTAPDPILKKVSSPVDTV---NDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIVLD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+K I +E+ + L M+ NP +K S++T EGCLS+ V RY
Sbjct: 63 LSKVDI----EEDNITNSEYKYPLFMV-NPIVKAISNQTVTAKEGCLSLPKQAIEVSRYH 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+I+VT LD + ++A GW AR +QHE DHLDG L VD +
Sbjct: 118 EIQVTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYL 159
>gi|398998626|ref|ZP_10701397.1| peptide deformylase [Pseudomonas sp. GM21]
gi|398119920|gb|EJM09593.1| peptide deformylase [Pseudomonas sp. GM21]
Length = 179
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + FEGCLSV G R VERY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLRPTLEEGFEGCLSVPGLRGAVERY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQP+ A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGQPVVRIASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|354615026|ref|ZP_09032840.1| Peptide deformylase [Saccharomonospora paurometabolica YIM 90007]
gi|353220618|gb|EHB85042.1| Peptide deformylase [Saccharomonospora paurometabolica YIM 90007]
Length = 184
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 24/176 (13%)
Query: 81 AGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE-DT 139
AGDPVLH REV E + ++DDM + M +A GVGLAA QIGV LR+ V +
Sbjct: 9 AGDPVLHTRTREV---ETFDADLATLVDDMFETMYAAEGVGLAANQIGVDLRLFVYDCPD 65
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVE 194
E + ++ +++NP+L+ + +EGCLSV G
Sbjct: 66 DEGVRHKG---------------LVVNPRLETSEIPETMPDPDDDWEGCLSVPGESYPTG 110
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
R +VTG D +G PI+V+ TG+ AR LQHE DHLDG LY+D+++ + R + +
Sbjct: 111 RASRAKVTGCDVEGTPIEVEGTGYFARCLQHETDHLDGYLYLDRLIGRHSRAAKKM 166
>gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp]
gi|421502977|ref|ZP_15949929.1| peptide deformylase [Pseudomonas mendocina DLHK]
gi|166198520|sp|A4XNB3.1|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp]
gi|400346434|gb|EJO94792.1| peptide deformylase [Pseudomonas mendocina DLHK]
Length = 168
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + I+ ++DDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFESLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKIKALDRDGQPFELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|409422323|ref|ZP_11259426.1| peptide deformylase [Pseudomonas sp. HYS]
Length = 168
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 25/165 (15%)
Query: 78 IVQAGDPVLH---EPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
I++ DP L +P EVD G ++ +IDDM + M APG+GLAA QI V RI+
Sbjct: 6 ILEFPDPRLRTIAKPVSEVDDG------VRQLIDDMFETMYEAPGIGLAATQINVHKRIV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ +++ + E + F +NP+L+ +D + EGCLSV G+ V+
Sbjct: 60 VMDLSED------RSEPRVF----------INPELEMLTDEMDQYQEGCLSVPGFYENVD 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R + ++V LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 104 RPIRVKVKALDRDGKPYELVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|398902204|ref|ZP_10650871.1| peptide deformylase [Pseudomonas sp. GM50]
gi|398178905|gb|EJM66539.1| peptide deformylase [Pseudomonas sp. GM50]
Length = 179
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPTLEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRI 157
>gi|77460570|ref|YP_350077.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398973690|ref|ZP_10684532.1| peptide deformylase [Pseudomonas sp. GM25]
gi|77384573|gb|ABA76086.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398142642|gb|EJM31535.1| peptide deformylase [Pseudomonas sp. GM25]
Length = 179
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V + S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMLDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPLMEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGVDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|398857791|ref|ZP_10613488.1| peptide deformylase [Pseudomonas sp. GM79]
gi|398240349|gb|EJN26032.1| peptide deformylase [Pseudomonas sp. GM79]
Length = 179
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPTEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPTLEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRI 157
>gi|398864310|ref|ZP_10619846.1| peptide deformylase [Pseudomonas sp. GM78]
gi|398245366|gb|EJN30888.1| peptide deformylase [Pseudomonas sp. GM78]
Length = 179
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A +V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPQVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPILEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QHIRYEGFDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRI 157
>gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 171
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ +E
Sbjct: 11 DPVLRQLSK---PIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDIAREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|421111054|ref|ZP_15571535.1| peptide deformylase [Leptospira santarosai str. JET]
gi|410803487|gb|EKS09624.1| peptide deformylase [Leptospira santarosai str. JET]
Length = 170
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 92/173 (53%), Gaps = 14/173 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + + V E+ ++ + +I DM M A GVGLAAPQIG+ +I+V+ ED
Sbjct: 2 GDPILRQVSEPVAENELQTKEFKKLIRDMFDTMHHAEGVGLAAPQIGILKQIVVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y + E +ILNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPGTPNVPE-----------RVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+ +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 111 RMQWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 163
>gi|305680739|ref|ZP_07403546.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
gi|305658944|gb|EFM48444.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266]
Length = 169
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 18/161 (11%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL A E+ + + ++++++DM+ M +A GVGLAA QIGV R+ V + T E
Sbjct: 10 GDPVLTSRADEITAFD---DSLKHLVEDMLDTMDAAGGVGLAANQIGVLRRVFVFDCTTE 66
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+ I+NP+ + + T L EGCLS+ A ERY + V
Sbjct: 67 EDGMRGH---------------IINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRV 111
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
TG D DG P+ + A+G AR +QHE DHLDG L++ ++ P+
Sbjct: 112 TGYDYDGNPLTITASGLMARCIQHETDHLDGVLFLRRLTPE 152
>gi|348173091|ref|ZP_08879985.1| putative polypeptide deformylase [Saccharopolyspora spinosa NRRL
18395]
Length = 192
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 24/190 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I GDPVLH P R P E + ++ ++DDM + M +A GVGLAA QIG+ LR+ V +
Sbjct: 6 ICVVGDPVLHNPTR---PVERFDDELRALVDDMFETMAAANGVGLAANQIGIDLRLFVYD 62
Query: 138 -DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRA 191
E + ++ +++NP+L ++ +EGCLSV G
Sbjct: 63 CPDDEGVQHRG---------------VVVNPELTTSEIPQSMPDPDDDWEGCLSVPGESY 107
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
R +VTG D DG+PI+++ TG+ AR LQHE DHLDG LY++++V + R + +
Sbjct: 108 PTGRASSAKVTGSDVDGKPIEIEGTGFFARCLQHETDHLDGHLYLERLVGRHARAAKKML 167
Query: 252 LPLAEGCPKL 261
G P L
Sbjct: 168 RRNGWGIPGL 177
>gi|422673357|ref|ZP_16732717.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
gi|330971091|gb|EGH71157.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
Length = 179
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V GS + +I DM + M S GVGLAAPQIGV L++++
Sbjct: 4 KILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S +EGCLSV G R +V+RY
Sbjct: 64 -------GFERNERYPQAEAVPQTIL--INPLITPLSPTLEEGWEGCLSVPGLRGMVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 QSIRYEGFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|402490565|ref|ZP_10837354.1| peptide deformylase [Rhizobium sp. CCGE 510]
gi|401810591|gb|EJT02964.1| peptide deformylase [Rhizobium sp. CCGE 510]
Length = 171
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ +E
Sbjct: 11 DPVLRQSSK---PIERVDADLQRLADDMLETMYDAPGIGLAAVQIGVPRRMLVIDIARE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+R+P + +NP++ SD +++ EGCLS+ Y A VER + V
Sbjct: 67 ----------GEERQP---QVFINPEIVTSSDERSVYEEGCLSIPDYYAEVERPAIVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|440740919|ref|ZP_20920391.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|447918007|ref|YP_007398575.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
gi|440375609|gb|ELQ12313.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|445201870|gb|AGE27079.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
Length = 179
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 DILKMGDERLLRIAAPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E D P +++NP + S +EGCLSV G R V RY
Sbjct: 64 -------GFEASERYP--DAPPVPQTILINPLITPLSPVVEEDYEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRI 157
>gi|256394158|ref|YP_003115722.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
gi|256360384|gb|ACU73881.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
Length = 225
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 96/187 (51%), Gaps = 28/187 (14%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
+ + K + G+ VLH P REV E G+ + ++DDM M A GVGLAA Q+G
Sbjct: 28 EAARGKELRVTVVGEEVLHRPCREV--AEFGTAELLQLVDDMFLTMYVAQGVGLAANQVG 85
Query: 129 VPLRIIVLE----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSD----RTALFF 180
V LR+ V + D ++ + I+NPKL + + R
Sbjct: 86 VDLRVFVYDCVDDDGARHVGH------------------IVNPKLDRTPEGGQRRLVEAQ 127
Query: 181 EGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
EGCLSV G + RY + G+D G+P+ ++ G+ AR LQHE DHL+GTLY+D+M
Sbjct: 128 EGCLSVPGPTRELPRYDHAVLHGVDVHGEPLVLEGEGYFARCLQHETDHLEGTLYIDRMN 187
Query: 241 PKTFRIV 247
KT R V
Sbjct: 188 KKTRRGV 194
>gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
Length = 183
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 24/179 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH+P REV + + + +++DM + M +A GVGLAA QIGV LR+ V +
Sbjct: 6 ICIVGEPVLHKPTREVSSFD---DELATLVEDMFETMYAAEGVGLAANQIGVDLRVFVYD 62
Query: 138 -DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRA 191
E + ++ +++NPKL+ + +EGCLSV G
Sbjct: 63 CPDDEGVRHKG---------------VVVNPKLETSEIPETMPDPDNDWEGCLSVPGESF 107
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
R +VTG D +G P++V+ TG+ AR LQHE DHLDG LY+D+++ + R + +
Sbjct: 108 PTGRASWAKVTGFDVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIGRHARAAKKM 166
>gi|398892402|ref|ZP_10645538.1| peptide deformylase [Pseudomonas sp. GM55]
gi|398185552|gb|EJM72951.1| peptide deformylase [Pseudomonas sp. GM55]
Length = 179
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRVAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPTLEEGFEGCLSVPGLRGAVQRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QRIRYEGVDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|409435828|ref|ZP_11263036.1| peptide deformylase [Rhizobium mesoamericanum STM3625]
gi|408752586|emb|CCM74183.1| peptide deformylase [Rhizobium mesoamericanum STM3625]
Length = 172
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPLLRQISK---PIERVDADFQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSRE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NP++ SD +++ EGCLS+ Y A VER + V
Sbjct: 67 ----------GEEKQP---LVFVNPEIVVSSDERSVYEEGCLSIPDYYAEVERPATVTVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LDRDG+ V+A G A LQHE DHL+G L++D +
Sbjct: 114 YLDRDGKEQTVEADGLLATCLQHEIDHLNGVLFIDHI 150
>gi|154252515|ref|YP_001413339.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
gi|154156465|gb|ABS63682.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
Length = 207
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Query: 77 EIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
+I + G PVL AR V DP + ++ ++ DM++ M A G GLAAPQ+ P RI+V
Sbjct: 5 KIARMGHPVLRGIARPVPDPT---APEVKALVRDMIETMIDANGAGLAAPQVYEPWRIVV 61
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ + + + +E +AFD L +++NP+++ ++ +EGCLSV G R V R
Sbjct: 62 FQAPESRLP-EGVDETEAFDHTA-PLTVLINPEVEILTEEMEKGWEGCLSVPGLRGSVPR 119
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ ++ G +G+ I+ A G+ AR++QHECDHLDG LY +M
Sbjct: 120 HTELRYRGYGLNGELIERRARGFHARVIQHECDHLDGILYPQRM 163
>gi|116328151|ref|YP_797871.1| peptide deformylase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116331396|ref|YP_801114.1| peptide deformylase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|122280858|sp|Q04RW4.1|DEF_LEPBJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|122284057|sp|Q051Q7.1|DEF_LEPBL RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|116120895|gb|ABJ78938.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116125085|gb|ABJ76356.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 178
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD +L + + V E+ ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y + E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPDTPNVPE-----------RVILNPIITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 114 RPNKIRMQWMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 171
>gi|270157701|ref|ZP_06186358.1| peptide deformylase [Legionella longbeachae D-4968]
gi|269989726|gb|EEZ95980.1| peptide deformylase [Legionella longbeachae D-4968]
Length = 172
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 9/157 (5%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
+P+L + A ++ E G+ +++++ M+ +M VG+AAPQIGV R+IV
Sbjct: 9 NPILRQVAEPINASEFGTPWLKSLVQTMIDIMAEKAAVGVAAPQIGVSKRVIVFG----- 63
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
SY + + P ++NP LK S+ +EGCL+ + V R ++IE +
Sbjct: 64 TSYTKRRQ----PEYPIPDTALINPTLKVLSEEIQTDYEGCLNCDDIMGEVPRAMEIEYS 119
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G D +G P+ A G +ARILQHE DHLDG L++D++
Sbjct: 120 GFDIEGNPVTKRARGLEARILQHEIDHLDGILFIDRI 156
>gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5]
Length = 171
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPILRQLSQ---PIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01]
gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01]
Length = 168
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + I+ ++DDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFESLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56]
Length = 171
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPILRQLSQ---PIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|395508564|ref|XP_003758580.1| PREDICTED: peptide deformylase, mitochondrial [Sarcophilus
harrisii]
Length = 206
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 80/133 (60%)
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF 179
VGL+APQ+G PL+++ LE + + +A P L + +NP+++ R F
Sbjct: 72 VGLSAPQLGAPLQVLALEFPESLLLSYPPAVRQARRMAPSPLRVFVNPQVRVLDSRLVSF 131
Query: 180 FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
EGCLSV G+ A V R +++ GL+ +G+ + A+GW ARI+QHE DHL G L++DKM
Sbjct: 132 PEGCLSVAGFVACVPRCQAVQIEGLNENGESVVWQASGWLARIIQHEMDHLQGCLFIDKM 191
Query: 240 VPKTFRIVENLDL 252
KTF V +++
Sbjct: 192 DSKTFTNVRWMEV 204
>gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3]
Length = 171
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPFLRQLSK---PIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|398789302|ref|ZP_10551198.1| polypeptide deformylase [Streptomyces auratus AGR0001]
gi|396991567|gb|EJJ02706.1| polypeptide deformylase [Streptomyces auratus AGR0001]
Length = 186
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 89/172 (51%), Gaps = 17/172 (9%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
Q ++ + GDP L EP +EV + ER+ ++DM M +A GVGLAA QIG
Sbjct: 7 QGSSGRVHPLRLLGDPALTEPCQEVTAFDGALERL---VEDMFATMYAAQGVGLAANQIG 63
Query: 129 VPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNG 188
VPLR+ V + + DRR L ++NP+L + EGCLS+ G
Sbjct: 64 VPLRVFVYDCPDDE------------DRR--HLGHLVNPRLVEADGPVFRGPEGCLSLPG 109
Query: 189 YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
A R+ VTG G+P V TG+ AR LQHECDHLDG LYVD +
Sbjct: 110 IEAGTPRHDHAVVTGSSVTGEPRTVTGTGFFARCLQHECDHLDGGLYVDHLT 161
>gi|443310198|ref|ZP_21039859.1| peptide deformylase [Synechocystis sp. PCC 7509]
gi|442779742|gb|ELR89974.1| peptide deformylase [Synechocystis sp. PCC 7509]
Length = 175
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 11/167 (6%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
+K+ E++Q G P+L A+ VD + S +IQN+ID+++ + +A GVG+AAPQ+ V R
Sbjct: 2 SKILEVIQLGHPILRSQAQNVDNTD--SPQIQNLIDNLLTTVIAANGVGIAAPQVAVNDR 59
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ ++ ++ Y + +++ ++NP++ S +EGCLS+ G R +
Sbjct: 60 LFIVA-SRPNPRYPTAPQMQP--------TAMINPQILAHSSELVKGWEGCLSIPGIRGL 110
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V RY IEV DR G+ K + T + ARI QHE DHLDG ++VD++
Sbjct: 111 VPRYRAIEVEYSDRAGKLHKQELTDFVARIFQHELDHLDGIVFVDRL 157
>gi|422348841|ref|ZP_16429733.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658893|gb|EKB31755.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 170
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 20/167 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I+Q DPVL A + +P ++ ++ + DM + M +APGVGLAA Q+G R
Sbjct: 2 ALLP-IIQYPDPVL---AAKAEPVTEFNDELRKLAADMAETMYAAPGVGLAANQVGSLKR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
I+V++ T E +LL+++NP +K ++ A F EGCLS+ G
Sbjct: 58 IVVIDITDE----------------KNNLLVLVNPYIKSHTEELAEFEEGCLSLKGLYEK 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V R + V D DG+P +++ATG A LQHE DHLDGT+++D +
Sbjct: 102 VSRPDGVTVCAQDLDGKPFEIEATGLLAVCLQHELDHLDGTVFIDHL 148
>gi|378824654|ref|YP_005187386.1| peptide deformylase [Sinorhizobium fredii HH103]
gi|365177706|emb|CCE94561.1| peptide deformylase [Sinorhizobium fredii HH103]
Length = 174
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + + P E I+ + DDM++ M APG+GLAA QIGV R++VL+ +KE
Sbjct: 11 DPILRQVST---PVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVSKRLLVLDVSKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NPK+ K ++ +++ EGCLS+ Y A VER I V
Sbjct: 67 ----------GEEKKP---LVFINPKIVKSTEERSVYEEGCLSIPDYYAEVERPAGITVE 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
DRDG+ V+A G A LQHE DHL+G L++D
Sbjct: 114 YRDRDGKEQSVEADGLLATCLQHEIDHLNGVLFID 148
>gi|417103872|ref|ZP_11961221.1| peptide deformylase protein [Rhizobium etli CNPAF512]
gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512]
Length = 171
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPLLRQLSK---PIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVE 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|209965357|ref|YP_002298272.1| peptide deformylase [Rhodospirillum centenum SW]
gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
Length = 186
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I + G PVL PA+ V+ ++ DM++ M APG+GLAAPQ+ V RI+V
Sbjct: 5 KIARMGHPVLRRPAQPVE--TPIPAVVRQFALDMIETMVDAPGIGLAAPQVHVGWRIVVF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + + + P + +++NP + S+ +EGCLS+ G R VV R+
Sbjct: 63 RVPGDRATGGAGD-------LPMEPQVLVNPAYEPLSEEMVEGWEGCLSIPGLRGVVPRF 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I GL DG ++ +A+G AR++QHE DHLDG LY+D+M
Sbjct: 116 ARIRYRGLSLDGTAVEREASGTHARVVQHEIDHLDGILYIDRM 158
>gi|58038609|ref|YP_190573.1| polypeptide deformylase [Gluconobacter oxydans 621H]
gi|58001023|gb|AAW59917.1| Polypeptide deformylase [Gluconobacter oxydans 621H]
Length = 170
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 98/166 (59%), Gaps = 13/166 (7%)
Query: 75 LPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
L +I + G+PVLH+ A+ V DP + IQ++I DM++ M A G GLAAPQ+ PLRI
Sbjct: 3 LLKIARMGNPVLHQVAQAVSDPK---APEIQSLIADMLETMADARGAGLAAPQVHQPLRI 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
V ++ + EE A R +++NP++ D + EGCLS+ G RA V
Sbjct: 60 FVYHVPTNRVA--NPEE--ALLPR-----VLINPEITPVGDEMMVCSEGCLSIPGLRADV 110
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R+ + +GLD +G ++ +ATG+ A +LQHE DHL+G LY ++
Sbjct: 111 PRHAKVRYSGLDENGAVLEGEATGFHANVLQHENDHLNGILYPQRI 156
>gi|251772750|gb|EES53312.1| peptide deformylase [Leptospirillum ferrodiazotrophum]
Length = 184
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 9/165 (5%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I + G+PVL + + V EI Q +DDM++ M+ G+GLAAPQ+ V +++
Sbjct: 3 LLKIAKMGNPVLRKISEPVSKEEIARPEFQRFLDDMIETMKDEDGLGLAAPQVHVSKQVV 62
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
++E S ++ ++ D P LL+++NP K S T +EGCLS++ R V
Sbjct: 63 IIE---------SLDDPRSEDGPPTPLLVLINPVFKYMSKETRTGWEGCLSLDNLRGKVT 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R +++ L R G+ I +D + A +LQHE DHL G L+VD+M
Sbjct: 114 RSRAVKLEALGRKGETIVLDWEEFPAVVLQHEIDHLRGHLFVDRM 158
>gi|418736511|ref|ZP_13292912.1| peptide deformylase [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|410747859|gb|EKR00762.1| peptide deformylase [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
Length = 170
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDP+L + + V E+ ++ + +I DM MR A GVGLAAPQIG+ +I+V+ ED
Sbjct: 2 GDPILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDN 61
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ Y + + E +ILNP + + T+ F+EGCLSV G R VER I
Sbjct: 62 ERYPNTPNVPE-----------RVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKI 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
+ +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 111 RMQWMDEKGGQFDEIIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 163
>gi|395762163|ref|ZP_10442832.1| peptide deformylase [Janthinobacterium lividum PAMC 25724]
Length = 178
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 92/170 (54%), Gaps = 17/170 (10%)
Query: 77 EIVQAGDPVL---HEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
+I++ GDP L EP R+ D E+ + +I DM M +A G GLAAPQIGV L++
Sbjct: 5 DILKMGDPRLLRMAEPVRDFDTPELHA-----LIADMFDTMHAANGAGLAAPQIGVNLQL 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
++ Y K ++ D +++NP L + R FEGCLSV G R V
Sbjct: 60 VI---------YGFKNNLRYPDAPQVPETVLINPVLTPLTQRKEEGFEGCLSVPGLRGSV 110
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT 243
R+ ++ G D+ GQPI D G+ AR++QHE DHL G LY ++V T
Sbjct: 111 PRWSELHYEGADQFGQPISRDCDGFHARVVQHEVDHLHGILYPMRIVDFT 160
>gi|57234458|ref|YP_181493.1| peptide deformylase [Dehalococcoides ethenogenes 195]
gi|123759709|sp|Q3Z8F6.1|DEF_DEHE1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|57224906|gb|AAW39963.1| peptide deformylase [Dehalococcoides ethenogenes 195]
Length = 167
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 25/159 (15%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE--DTK 140
+P+L + A++V P GS IQ +IDDM++ M+SA G GLAAPQ+GV LR+IV D K
Sbjct: 11 EPILRKKAKKV-PSIDGS--IQTLIDDMIETMKSADGAGLAAPQVGVSLRLIVFREPDAK 67
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
E +++NP++ KK + + EGCLS+ GY + R +
Sbjct: 68 EAT-------------------VLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVT 107
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
GLDR G+ ++ TG A++L+HE +HLDG LY+D +
Sbjct: 108 AKGLDRHGKAFRIKGTGVVAQLLEHETEHLDGILYIDHL 146
>gi|313201227|ref|YP_004039885.1| peptide deformylase [Methylovorus sp. MP688]
gi|312440543|gb|ADQ84649.1| peptide deformylase [Methylovorus sp. MP688]
Length = 169
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 11/154 (7%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+L + A V + + +I DM M G G+AAPQIGV LR+++ K
Sbjct: 2 GDPLLLQKAAPVT--AFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVIFGVGKN 59
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
Y E++ P+ +L +NP L+ +D +EGCLSV G R +V RY+ +
Sbjct: 60 -PRYPDAEQV------PYTVL--VNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHY 110
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
TG D+ G PI +G+ AR++QHECDHLDG LY
Sbjct: 111 TGFDQYGNPIDRLVSGFHARVVQHECDHLDGILY 144
>gi|426411135|ref|YP_007031234.1| peptide deformylase [Pseudomonas sp. UW4]
gi|426269352|gb|AFY21429.1| peptide deformylase [Pseudomonas sp. UW4]
Length = 179
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPIMEEGFEGCLSVPGLRGAVQRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGVDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRI 157
>gi|190890084|ref|YP_001976626.1| peptide deformylase [Rhizobium etli CIAT 652]
gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652]
Length = 171
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPLLRQLSK---PIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ K SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|455647128|gb|EMF26114.1| polypeptide deformylase [Streptomyces gancidicus BKS 13-15]
Length = 181
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 17/164 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P EV + G E + ++++D+ M +A GVGLAA QIGVPLR+ V + +
Sbjct: 20 GDPVLHTPCGEVT--DFGPE-LADLVEDLFATMYAAHGVGLAANQIGVPLRVFVFDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
EE++ L ++NP+ EGCLS+ G A ERY V
Sbjct: 77 -------EEVR-------HLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
G G+P+ V TG+ AR LQHE DHL+GT+Y D++ + R
Sbjct: 123 EGFTVTGEPVTVHGTGFFARCLQHESDHLEGTVYADRLAGRRHR 166
>gi|73748571|ref|YP_307810.1| peptide deformylase [Dehalococcoides sp. CBDB1]
gi|289432597|ref|YP_003462470.1| peptide deformylase [Dehalococcoides sp. GT]
gi|452203556|ref|YP_007483689.1| peptide deformylase [Dehalococcoides mccartyi DCMB5]
gi|123773670|sp|Q3ZXA9.1|DEF_DEHSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|73660287|emb|CAI82894.1| polypeptide deformylase [Dehalococcoides sp. CBDB1]
gi|288946317|gb|ADC74014.1| peptide deformylase [Dehalococcoides sp. GT]
gi|452110615|gb|AGG06347.1| peptide deformylase [Dehalococcoides mccartyi DCMB5]
Length = 167
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 25/164 (15%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + +PVL + A++V P GS IQ +IDDM++ M SA G GLAAPQ+GV LR++V
Sbjct: 6 ICELPEPVLRKKAKKV-PSIDGS--IQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFR 62
Query: 138 --DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
DTKE +++NP++ KK + + EGCLS+ GY + R
Sbjct: 63 EPDTKEAT-------------------VLINPEIVKKEGQRQVT-EGCLSIPGYFGELTR 102
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ GLDR G+ ++ TG A++L+HE +HLDG LY+D +
Sbjct: 103 AETVTAKGLDRHGKACRIKGTGIVAQLLEHETEHLDGILYIDHL 146
>gi|328783477|ref|XP_623373.2| PREDICTED: hypothetical protein LOC409613 isoform 2 [Apis
mellifera]
Length = 328
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 81/140 (57%)
Query: 106 IIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMIL 165
I+D + ++++ VGLAAPQIG+P ++ V+E T+E I + K + P L +
Sbjct: 173 ILDHLYELLKKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTYFI 232
Query: 166 NPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQH 225
NPK+ + + FE C S++ Y A V R ++++ L++ G+ + A GW ARI+ H
Sbjct: 233 NPKMNIINSEEVVHFETCASIDCYYAEVPRPKEVQIEALNKFGESFSMKAEGWLARIIHH 292
Query: 226 ECDHLDGTLYVDKMVPKTFR 245
E DHL G LY D+M P +F
Sbjct: 293 EMDHLKGHLYTDRMFPFSFN 312
>gi|398875132|ref|ZP_10630320.1| peptide deformylase [Pseudomonas sp. GM74]
gi|398192901|gb|EJM80027.1| peptide deformylase [Pseudomonas sp. GM74]
Length = 179
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPILEEGFEGCLSVPGLRGAVQRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGVDPKGEPIVRMASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|398931056|ref|ZP_10664952.1| peptide deformylase [Pseudomonas sp. GM48]
gi|398164350|gb|EJM52489.1| peptide deformylase [Pseudomonas sp. GM48]
Length = 179
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPILEEGFEGCLSVPGLRGAVQRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGVDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|225021362|ref|ZP_03710554.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii
ATCC 33806]
gi|224945744|gb|EEG26953.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii
ATCC 33806]
Length = 169
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL A E+ + + ++++++DM M +A GVGLAA QIGV R+ V + T E
Sbjct: 10 GDPVLTSRADEITAFD---DSLKHLVEDMFDTMDAAGGVGLAANQIGVLRRVFVFDCTTE 66
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+ I+NP+ + + T L EGCLS+ A ERY + V
Sbjct: 67 EDGMRGH---------------IINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRV 111
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
TG D DG P+ + A+G AR +QHE DHLDG L++ ++ P+
Sbjct: 112 TGYDYDGNPLTITASGLMARCIQHETDHLDGVLFLRRLTPE 152
>gi|237798881|ref|ZP_04587342.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021735|gb|EGI01792.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 179
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS ++ +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRVAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + +EGCLSV G R +V+RY
Sbjct: 64 ------GFERSERYPEAEAVPQTIL--LNPLITPLGPNMEEGWEGCLSVPGLRGMVDRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D DG PI+ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPDGLPIERVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|295676828|ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE1002]
gi|295436671|gb|ADG15841.1| peptide deformylase [Burkholderia sp. CCGE1002]
Length = 177
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L A VD + + +++DM + M +A G GLAAPQIGV L++++
Sbjct: 4 DILKMGDPRLLRIAEPVD--HFDTPELHRLVEDMFETMHAANGAGLAAPQIGVNLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E D P +++NP + S +EGCLSV G R VV R+
Sbjct: 62 -------GFGSNERYP--DAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D+ G PI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIRYHGFDQFGNPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|387895261|ref|YP_006325558.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|387161885|gb|AFJ57084.1| peptide deformylase [Pseudomonas fluorescens A506]
Length = 179
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E + P +++NP + S +EGCLSV G R V RY
Sbjct: 64 -------GFEASERYP--EAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRIT 158
>gi|398876979|ref|ZP_10632129.1| peptide deformylase [Pseudomonas sp. GM67]
gi|398886047|ref|ZP_10640940.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398190862|gb|EJM78072.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398203437|gb|EJM90259.1| peptide deformylase [Pseudomonas sp. GM67]
Length = 179
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPVMEEGFEGCLSVPGLRGAVSRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRIT 158
>gi|147669331|ref|YP_001214149.1| peptide deformylase [Dehalococcoides sp. BAV1]
gi|452204991|ref|YP_007485120.1| peptide deformylase [Dehalococcoides mccartyi BTF08]
gi|189083069|sp|A5FRA7.1|DEF_DEHSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146270279|gb|ABQ17271.1| peptide deformylase [Dehalococcoides sp. BAV1]
gi|452112047|gb|AGG07778.1| peptide deformylase [Dehalococcoides mccartyi BTF08]
Length = 167
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 25/164 (15%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + +PVL + A++V P GS IQ +IDDM++ M SA G GLAAPQ+GV LR++V
Sbjct: 6 ICELPEPVLRKKAKKV-PSIDGS--IQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFR 62
Query: 138 --DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
DTKE +++NP++ KK + + EGCLS+ GY + R
Sbjct: 63 EPDTKEAT-------------------VLINPEIIKKEGQRQVT-EGCLSIPGYFGELTR 102
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ GLDR G+ ++ TG A++L+HE +HLDG LY+D +
Sbjct: 103 AETVTAKGLDRHGKACRIKGTGIVAQLLEHETEHLDGILYIDHL 146
>gi|392375901|ref|YP_003207734.1| peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2)
[Candidatus Methylomirabilis oxyfera]
gi|258593594|emb|CBE69935.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2)
[Candidatus Methylomirabilis oxyfera]
Length = 176
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++ + G PVL + A V P I IQ +IDDM++ MR GVG+AAPQ+ V +I V+
Sbjct: 5 KVARLGHPVLRQVAPPVRPETIREAEIQRLIDDMIETMREYEGVGIAAPQVHVSKQIAVI 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E SK + D L +++N ++ + +EGCLS+ +R RY
Sbjct: 65 E---------SKGNTRYPDAPEIPLTVLINLEVTPLAPELEDDWEGCLSLIDFRGQTPRY 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ LDR+G+ + ATG+ AR+LQHE DHL G L++D+M
Sbjct: 116 QQVRAKALDREGRSFEFVATGFHARVLQHERDHLLGKLFIDRM 158
>gi|344998242|ref|YP_004801096.1| peptide deformylase [Streptomyces sp. SirexAA-E]
gi|344313868|gb|AEN08556.1| peptide deformylase [Streptomyces sp. SirexAA-E]
Length = 166
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 84/156 (53%), Gaps = 17/156 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P EV + G + +++DM M +A GVGLAA QIGVPLR+ V +
Sbjct: 5 GDPVLHSPCEEVT--DFGPS-LARLVEDMFATMYAAHGVGLAANQIGVPLRVFVYD---- 57
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+E++ L ++NP + T EGCLS+ G A R+ V
Sbjct: 58 ---CPDDDEVR-------HLGHLVNPVCVEADGITVRGPEGCLSLPGLEAGTPRFDRTVV 107
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
G G+P++V TGW AR LQHECDHLDGT+Y D
Sbjct: 108 EGRTVTGEPVRVTGTGWFARCLQHECDHLDGTVYPD 143
>gi|407363339|ref|ZP_11109871.1| peptide deformylase [Pseudomonas mandelii JR-1]
Length = 179
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + + FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLNSLMEEGFEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQPI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGQPILRIAEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|395496647|ref|ZP_10428226.1| peptide deformylase [Pseudomonas sp. PAMC 25886]
gi|395794403|ref|ZP_10473728.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|421140613|ref|ZP_15600612.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
gi|395341429|gb|EJF73245.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|404508216|gb|EKA22187.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
Length = 179
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++S E P +L +NP + S +EGCLSV G R V+RY
Sbjct: 64 -------GFESSERYPDAPAVPQTIL--INPLITPLSPVLEEGYEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRIAEGFHARVVQHECDHLIGRLYPSRI 157
>gi|302187708|ref|ZP_07264381.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
gi|422616674|ref|ZP_16685379.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|422632436|ref|ZP_16697605.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|422667293|ref|ZP_16727157.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|440722908|ref|ZP_20903278.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|440727341|ref|ZP_20907577.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|443642779|ref|ZP_21126629.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
gi|330896888|gb|EGH28478.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|330942465|gb|EGH45062.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330977866|gb|EGH77769.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|440360484|gb|ELP97756.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|440364106|gb|ELQ01246.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|443282796|gb|ELS41801.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
Length = 179
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V GS + +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 4 KILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S +EGCLSV G R +V+RY
Sbjct: 64 -------GFERNERYPQAEAVPQTIL--INPLITPLSPTLEEGWEGCLSVPGLRGMVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 QSIRYEGFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|389807918|ref|ZP_10204402.1| peptide deformylase [Rhodanobacter thiooxydans LCS2]
gi|388443399|gb|EIL99550.1| peptide deformylase [Rhodanobacter thiooxydans LCS2]
Length = 184
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V P +GS + +I DM + M++A GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIAPLVRPAMLGSAELDALIADMFETMQAADGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ Y E+ ++LNP + S +EGCLSV G R V R+
Sbjct: 64 -GFEHSGRYPDAPEVPR--------TILLNPVITPLSQDMEEGWEGCLSVPGLRGAVNRW 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G I+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 TLIRYEGIDPKGARIERTAEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|409396477|ref|ZP_11247463.1| peptide deformylase [Pseudomonas sp. Chol1]
gi|409118958|gb|EKM95348.1| peptide deformylase [Pseudomonas sp. Chol1]
Length = 168
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + I+ +IDDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAK---PVEVVDDGIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEALTEEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRVKALDRDGQPYEIIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
Length = 182
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 99/167 (59%), Gaps = 7/167 (4%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L EI Q G+PVL E R P E + ++ + ++M++ M +A G+GLAAPQ+ +P++++
Sbjct: 2 LLEIAQYGNPVLKEKCR---PVEHFDDSLKTLAENMLETMYAAEGIGLAAPQVSIPIQLV 58
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDL--LMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
V++ KE S + ++ D+ D+ LM NP L+ F EGCLSV RA
Sbjct: 59 VIDIPKEEESV-TWLKVNGEDKELSDIMPLMFANPVLEPYGPMHP-FHEGCLSVMKIRAS 116
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V R ++ T L DG+ I +D G AR LQHECDHL+G L+V+++
Sbjct: 117 VVRPDFVKATVLLIDGREITIDCNGLLARCLQHECDHLNGILFVERV 163
>gi|401680099|ref|ZP_10812023.1| peptide deformylase [Veillonella sp. ACP1]
gi|400219226|gb|EJO50097.1| peptide deformylase [Veillonella sp. ACP1]
Length = 162
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 21/162 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+V+AG P+L E A +P E +++++ +I+DM M GVGLAAPQ+ V RIIV+
Sbjct: 5 EVVKAGHPILKEVA---EPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D L+ ++NP++ + + + EGCLSV GY VER+
Sbjct: 62 DD-----------------HAGSGLIALINPEIIH-GEGSQIGLEGCLSVPGYFGDVERF 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ VTG+D + + + A G+ ARI QHE DHL+G L+++K
Sbjct: 104 EKVTVTGIDPHNKKVMIKAEGFLARIFQHEIDHLEGHLFIEK 145
>gi|325291800|ref|YP_004277664.1| polypeptide deformylase [Agrobacterium sp. H13-3]
gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
H13-3]
Length = 170
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + +R P E + + DDM++ M APG+GLAA Q+GVP R++V++ ++E
Sbjct: 11 DPVLRQQSR---PIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLVIDVSRE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
EE K ++ +NP++ + SD + + EGCLS+ Y A VER + V
Sbjct: 67 -----DEEKKP--------VVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVR 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
+DRDG+ VDA G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YVDRDGKHQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKF 162
>gi|66047008|ref|YP_236849.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|63257715|gb|AAY38811.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
B728a]
Length = 179
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V GS + +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 4 KILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S +EGCLSV G R +V+RY
Sbjct: 64 -------GFERNERYPEAEAVPQTIL--INPLITPLSPTLEEGWEGCLSVPGLRGMVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 QSIRYEGFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|422324947|ref|ZP_16405984.1| polypeptide deformylase [Rothia mucilaginosa M508]
gi|353343656|gb|EHB87971.1| polypeptide deformylase [Rothia mucilaginosa M508]
Length = 190
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 92/170 (54%), Gaps = 22/170 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV G+PVLH PA V E E ++ ++ DM + M ++ GVGLAAPQIGV LRI
Sbjct: 6 IVIHGNPVLHRPAAPVT--EFNDE-LKELVADMYETMDASNGVGLAAPQIGVGLRIF--- 59
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA-----LFFEGCLSVNGYRAV 192
+Y+ + E R I+NP L TA EGCLS GY
Sbjct: 60 ------TYKMENEDGVPPRG-----CIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
++R + V GLD G P++ +ATGW AR +QHE DHLDG LYV+++ K
Sbjct: 109 LKRAEWVTVNGLDEHGNPVQFEATGWFARCMQHETDHLDGKLYVNRLNKK 158
>gi|415908398|ref|ZP_11552971.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
gi|407762793|gb|EKF71577.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
Length = 178
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 15/161 (9%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ V E G+ + ++DDM + MR+ G GLAAPQIG+ L++++
Sbjct: 5 EILKMGDPRLLRQAQPVT--EFGTPELARLVDDMFETMRAVNGAGLAAPQIGIDLQLVIF 62
Query: 137 E--DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+ Y + E +++NP L SD+ +EGCLSV G R VV
Sbjct: 63 GFGRNQRYPDAPAVPET-----------VLINPILTPLSDQEEEGWEGCLSVPGMRGVVP 111
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R+ + G+D++G+ I G+ AR++QHECDHL G LY
Sbjct: 112 RWSRLRYQGVDQNGKLIDRTVEGFHARVVQHECDHLQGILY 152
>gi|375102757|ref|ZP_09749020.1| peptide deformylase [Saccharomonospora cyanea NA-134]
gi|374663489|gb|EHR63367.1| peptide deformylase [Saccharomonospora cyanea NA-134]
Length = 185
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 94/176 (53%), Gaps = 24/176 (13%)
Query: 81 AGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE-DT 139
AGDPVLH+P REV + + + ++DDM + M +A GVGLAA QIGV LR+ V +
Sbjct: 9 AGDPVLHQPTREVSTYD---DELATLVDDMFETMYAAEGVGLAANQIGVDLRVFVYDCPD 65
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVE 194
E + ++ +++NP L + +EGCLSV G
Sbjct: 66 DEGVRHKG---------------VVVNPTLSTSEIPETMPDPDDDWEGCLSVPGESYPTG 110
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
R +VTG D G I+V+ TG+ AR LQHE DHL+G LY+D++V + R + +
Sbjct: 111 RASWAKVTGFDVQGNAIEVEGTGYFARCLQHETDHLNGYLYLDRLVGRHARAAKKM 166
>gi|54297041|ref|YP_123410.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
gi|378776972|ref|YP_005185409.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|53750826|emb|CAH12234.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris]
gi|364507786|gb|AEW51310.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 172
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + A + E GS ++ +I M +M VG+AAPQIG+ R+IV + EY
Sbjct: 9 DPILRQTAEPIAESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVF--STEY 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+ E P ++NP LK S +EGCL+ V R ++IE +
Sbjct: 67 TKRRKPE-------YPIPDTALINPSLKILSKEIQNGYEGCLNCGEIMGEVPRAMEIEYS 119
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G D DG I A+G +ARILQHE DHLDG L++D++
Sbjct: 120 GFDIDGNKITKTASGLEARILQHEIDHLDGFLFLDRV 156
>gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4]
gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4]
Length = 188
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 24/190 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I AG+PVLH+P RE+ + +++ +++DM + M +A GVGLAA QIG+ LR+ V +
Sbjct: 6 ICIAGEPVLHQPTREITEFD---DKLAALVEDMFETMYAAEGVGLAANQIGLDLRVFVYD 62
Query: 138 -DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRA 191
E + ++ +++NPKL+ + +EGCLS G
Sbjct: 63 CPDDEGVEHKG---------------VVVNPKLETSEIPETMPDPDDDWEGCLSAPGESY 107
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
R +VTG D +G PI+V+ TG+ AR LQHE DHLDG +Y+D++V + R + +
Sbjct: 108 PTGRAKWAKVTGFDVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKML 167
Query: 252 LPLAEGCPKL 261
G P L
Sbjct: 168 KKNKWGVPGL 177
>gi|399518641|ref|ZP_10759595.1| peptide deformylase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399113135|emb|CCH36153.1| peptide deformylase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 168
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + I+ ++DDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEPLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|255326017|ref|ZP_05367105.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
gi|255296908|gb|EET76237.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
Length = 228
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 90/167 (53%), Gaps = 22/167 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV G+PVLH PA V E E ++ ++ DM + M ++ GVGLAAPQIGV LRI
Sbjct: 44 IVIHGNPVLHRPAAPVT--EFNDE-LKELVADMYETMDASNGVGLAAPQIGVGLRIF--- 97
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA-----LFFEGCLSVNGYRAV 192
+Y+ + E R I+NP L TA EGCLS GY
Sbjct: 98 ------TYKMENEDGVPPRG-----CIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFP 146
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++R + V GLD G P+ +ATGW AR +QHE DHLDG LYV+++
Sbjct: 147 LKRAEWVTVNGLDEHGNPVHFEATGWFARCMQHETDHLDGKLYVNRL 193
>gi|229592219|ref|YP_002874338.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|229364085|emb|CAY51686.1| peptide deformylase [Pseudomonas fluorescens SBW25]
Length = 179
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S + +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E D P +++NP + +EGCLSV G R V RY
Sbjct: 64 -------GFEASERYP--DAPPVPQTILINPLITPLGPVLEEGYEGCLSVPGMRGAVSRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRFADGFHARLVQHECDHLIGRLYPSRIT 158
>gi|300741380|ref|ZP_07071401.1| peptide deformylase [Rothia dentocariosa M567]
gi|300380565|gb|EFJ77127.1| peptide deformylase [Rothia dentocariosa M567]
Length = 190
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 22/170 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V G+PVLH PA V + + + ++ DM + M +A GVGLAAPQIGV LR+
Sbjct: 6 VVIYGNPVLHRPAAPVTAFD---DEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVF--- 59
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
+YQ + E R I+NP+L A EGCLS GY
Sbjct: 60 ------TYQMENEDGVTPRG-----CIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
++R + V G D +G P++ +ATGW AR +QHE DHLDG LYV+++ K
Sbjct: 109 LKRAEWVTVNGFDVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNKK 158
>gi|416028708|ref|ZP_11571625.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|422404428|ref|ZP_16481481.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|320327457|gb|EFW83470.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|330877286|gb|EGH11435.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 179
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS + +I DM + + S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETIHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + S +EGCLSV G R +V RY
Sbjct: 64 ------GFERSERYPQAEAVPQTIL--LNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D +GQP++ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|313888509|ref|ZP_07822176.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845538|gb|EFR32932.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 163
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 14/159 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+L + ++ V ++R++ +IDDM + M APGVGLAAPQIG+ R+IV++
Sbjct: 10 GDPILRKKSKVVTNY---NDRLKLLIDDMYETMDLAPGVGLAAPQIGILKRVIVVD---- 62
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
++EE +P MI NP++ +K D + EGCLSV G + V+R I+V
Sbjct: 63 -----NREEDNDEGEKPMRFYMI-NPEIIEK-DGEEVSMEGCLSVPGKQGTVKRAKHIKV 115
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
D +GQ ++A + ARI+QHE DHLDG LY DK +
Sbjct: 116 KYNDLEGQEKLMEAEDFLARIIQHETDHLDGILYTDKAI 154
>gi|443474080|ref|ZP_21064101.1| Peptide deformylase [Pseudomonas pseudoalcaligenes KF707]
gi|442905015|gb|ELS29930.1| Peptide deformylase [Pseudomonas pseudoalcaligenes KF707]
Length = 168
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + I+ +IDDM + M +APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDSIRTLIDDMFETMYAAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|365864644|ref|ZP_09404324.1| putative polypeptide deformylase [Streptomyces sp. W007]
gi|364005907|gb|EHM26967.1| putative polypeptide deformylase [Streptomyces sp. W007]
Length = 166
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 17/159 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+LH +V + G + +++DM M +A GVGLAA Q+GVPL++ V +
Sbjct: 5 GDPLLHRACEDVT--DFGPS-LARLVEDMFATMYAAQGVGLAANQVGVPLKVFVYD---- 57
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
++++ ++NP+L + T EGCLS+ G A +R+ V
Sbjct: 58 ---CPDDDDVRHLGH-------VVNPELVEADGLTVRGPEGCLSLPGLEAGTDRFDHAVV 107
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
GL G+P+++ TGW AR LQHECDHL+GT+Y D++
Sbjct: 108 EGLTMTGEPVRIAGTGWFARCLQHECDHLEGTVYTDRLT 146
>gi|257095171|ref|YP_003168812.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257047695|gb|ACV36883.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 177
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GDP L A V+ + + + +I DM + MR G GLAAPQIGV LR+++
Sbjct: 5 VLRMGDPRLARKAAPVE--QFATPALHALIADMEETMRHLDGAGLAAPQIGVGLRLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
Y E P +++NP L S T +EGCLSV G R V R+
Sbjct: 62 GVDRNPRYPEAE--------PVPRTVLINPVLFPLSSATEEAWEGCLSVPGLRGWVPRWS 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ TG D G+PI G+ AR++QHECDHLDG LY
Sbjct: 114 RLRYTGFDARGRPIDRSVAGFHARVVQHECDHLDGILY 151
>gi|408673453|ref|YP_006873201.1| Peptide deformylase [Emticicia oligotrophica DSM 17448]
gi|387855077|gb|AFK03174.1| Peptide deformylase [Emticicia oligotrophica DSM 17448]
Length = 191
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV GDPVL + AR+++ GEI ++ + DDM + M +A GVGLAAPQIG+ +R+ V++
Sbjct: 5 IVAYGDPVLRKEARDIEKGEID---VKKLADDMFETMYAASGVGLAAPQIGMDIRVFVVD 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL-MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
T S ++ E+I D D + +N ++ ++S + EGCLS+ G RA V R
Sbjct: 62 GTPINESAETDEDI---DPSLIDFKKVFINAEIIEESGEEWAYEEGCLSIPGVRADVYRP 118
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ D D D G ARI+QHE DH+DG L+ D +
Sbjct: 119 EFVKIRYFDTDWNEHIEDYEGMAARIIQHEYDHIDGILFTDHL 161
>gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13]
gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13]
Length = 208
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 23/180 (12%)
Query: 73 AKLPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
A+LP I++ DP L +P+R V D G+ ++++I DM + M APGVGLAAPQI V
Sbjct: 31 ARLP-ILRYPDPRLLKPSRPVTDFGD----SLKSLIADMAQTMYEAPGVGLAAPQINVHK 85
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
++IV++ +++ K E++ F +NP++ K S+ A+F EGCLS+ G
Sbjct: 86 QLIVIDVSEQ------KNELRVF----------INPQIVKASEEKAIFEEGCLSLPGIYD 129
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP-KTFRIVENL 250
+ER + V LD +G+ +++A G A +QHE DHL G+++VD + P K RI + L
Sbjct: 130 EIERPAKVTVRALDANGKEFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKL 189
>gi|357613198|gb|EHJ68366.1| hypothetical protein KGM_14914 [Danaus plexippus]
Length = 162
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 78/139 (56%)
Query: 106 IIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMIL 165
++ + V+ VG+AAPQIGV +R+IVL T++ I+ S E IK L + +
Sbjct: 2 VVQALKYVLYKYGSVGMAAPQIGVNMRVIVLRHTEKQIASLSSELIKQRQISAVPLTVFI 61
Query: 166 NPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQH 225
NP LK + + E C SV + A V RY +++V+G D +G+ I GW ARI QH
Sbjct: 62 NPILKVVDYQKVIHPEACESVRAFSADVARYKEVQVSGYDEEGEAISKVFKGWGARIAQH 121
Query: 226 ECDHLDGTLYVDKMVPKTF 244
E DHLDG LY D M KT
Sbjct: 122 EMDHLDGKLYTDIMDRKTL 140
>gi|337279680|ref|YP_004619152.1| peptide deformylase [Ramlibacter tataouinensis TTB310]
gi|334730757|gb|AEG93133.1| candidate peptide deformylase (Polypeptide deformylase)
[Ramlibacter tataouinensis TTB310]
Length = 196
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 71 KKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVP 130
++ + I++ GD L A+ V G++ I+ ++ DM + M + G GLAAPQIGV
Sbjct: 16 RRMTVRTILKMGDARLLRVAQPVT--AFGTDEIRRLVADMFETMAAVNGAGLAAPQIGVD 73
Query: 131 LRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYR 190
L++++ Y D P ++LNP + D +EGCLSV G R
Sbjct: 74 LQLVIFGTDAPNPRYP--------DAPPVPRTVLLNPVVTPLGDEKEEGWEGCLSVPGLR 125
Query: 191 AVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
VV R+ I G D DG+PI +A G+ AR++QHECDHL G LY
Sbjct: 126 GVVPRHRRIRYRGFDPDGRPIDREAEGFHARVVQHECDHLVGKLY 170
>gi|283458224|ref|YP_003362842.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
gi|283134257|dbj|BAI65022.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
Length = 248
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 90/167 (53%), Gaps = 22/167 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV G+PVLH PA V E E ++ ++ DM + M ++ GVGLAAPQIGV LRI
Sbjct: 64 IVIHGNPVLHRPAAPVT--EFNDE-LKELVADMYETMDASNGVGLAAPQIGVGLRIF--- 117
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA-----LFFEGCLSVNGYRAV 192
+Y+ + E R I+NP L TA EGCLS GY
Sbjct: 118 ------TYKMENEDGVPPRG-----CIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFP 166
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++R + V GLD G P+ +ATGW AR +QHE DHLDG LYV+++
Sbjct: 167 LKRAEWVTVNGLDEHGNPVHFEATGWFARCMQHETDHLDGKLYVNRL 213
>gi|302561940|ref|ZP_07314282.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
gi|302479558|gb|EFL42651.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
Length = 184
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 17/159 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P REV + G E + ++DD+ M A GVGLAA Q+G PLR+ V + +
Sbjct: 23 GDPVLHAPCREVT--DFGPE-LARLVDDLFATMYEARGVGLAANQVGEPLRVFVYDCPDD 79
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ L ++NP+ EGCLS+ G A ERY V
Sbjct: 80 -------EDVR-------HLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVV 125
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
G G+P+ V TG+ AR LQHECDHLDG +Y D++
Sbjct: 126 EGFTVTGEPVTVHGTGFFARCLQHECDHLDGRIYADRLT 164
>gi|418467119|ref|ZP_13038013.1| polypeptide deformylase [Streptomyces coelicoflavus ZG0656]
gi|371552256|gb|EHN79510.1| polypeptide deformylase [Streptomyces coelicoflavus ZG0656]
Length = 179
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 17/164 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P EV + G E + +++D+ M +A GVGLAA QIG LR+ V
Sbjct: 20 GDPVLHAPCAEVT--DFGPE-LAALVEDLFATMYAAHGVGLAANQIGEALRVFV------ 70
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
Y +EE L ++NP+L + EGCLS+ G A ER+ + V
Sbjct: 71 YDCPDDEEERH--------LGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERHDEAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
TG G+P+ V TG+ AR LQHECDHL+G +Y D++ + R
Sbjct: 123 TGFTVTGEPVTVRGTGFFARCLQHECDHLEGRVYADRLTGRRHR 166
>gi|325277883|ref|ZP_08143429.1| peptide deformylase [Pseudomonas sp. TJI-51]
gi|324096986|gb|EGB95286.1| peptide deformylase [Pseudomonas sp. TJI-51]
Length = 178
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +GS +Q +IDDM + MR GVGLAAPQ+G+ L++++
Sbjct: 4 DILKMGDERLLRVAAPVPAQLLGSGELQQLIDDMFETMRHVGGVGLAAPQVGIELQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYPDAEAVPQTIL--LNPVITPTSTELEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G I+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHICYEGIDPQGNAIRRFAEGFHARVVQHECDHLIGRLYPSRI 157
>gi|383785681|ref|YP_005470251.1| peptide deformylase [Leptospirillum ferrooxidans C2-3]
gi|383084594|dbj|BAM08121.1| peptide deformylase [Leptospirillum ferrooxidans C2-3]
Length = 186
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 95/165 (57%), Gaps = 9/165 (5%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I + G+P+L + A V EI + Q+ IDD+V MR G+GLAAPQ+ V +++
Sbjct: 3 LLKIARMGNPILRKIAEAVPLAEIETPAFQSFIDDLVDTMRDGDGLGLAAPQVHVSKQVV 62
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V+E S E + D LL+++NP K S T +EGCLSV+ R V
Sbjct: 63 VVE---------SIENERYPDAPSIGLLVLVNPVFKYMSKETRYGWEGCLSVDNLRGKVT 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R +++ LDR G+ + +D G+ A ILQHE DHL GTL+VD+M
Sbjct: 114 RSRAVKLEALDRYGKKMLLDWEGFPAVILQHETDHLRGTLFVDRM 158
>gi|374292333|ref|YP_005039368.1| Formylmethionine deformylase [Azospirillum lipoferum 4B]
gi|357424272|emb|CBS87139.1| Formylmethionine deformylase [Azospirillum lipoferum 4B]
Length = 183
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 90/163 (55%), Gaps = 15/163 (9%)
Query: 78 IVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
I + G+PVL + A + DP + R+ DM+ M APGVGLAAPQI RIIV
Sbjct: 6 IARMGNPVLRKIAEPIADPTDPAVARLAA---DMIATMLDAPGVGLAAPQISESRRIIVF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ EE+ +++NP ++ SD L +EGCLS+ G R +V RY
Sbjct: 63 RVPADR---GEGEEVAN--------TVLVNPVIEPLSDDKVLGWEGCLSIPGLRGLVPRY 111
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G DG I+ +A+G+ AR++QHE DHLDG LY+D+M
Sbjct: 112 GRIRYRGYGLDGARIEREASGFHARVVQHEVDHLDGVLYLDRM 154
>gi|237747725|ref|ZP_04578205.1| peptide deformylase [Oxalobacter formigenes OXCC13]
gi|229379087|gb|EEO29178.1| peptide deformylase [Oxalobacter formigenes OXCC13]
Length = 178
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 13/160 (8%)
Query: 77 EIVQAGDPVLHEPAREVDP-GEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
+I++ GD L RE +P + + + +I+DM + M +A G GLAAPQIG+ R+++
Sbjct: 5 KILKMGDSRL---LRESEPVKQFNTPELNQLIEDMYETMYAADGAGLAAPQIGINQRVVI 61
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ E + D P +++NP ++ SD +EGCLS+ G R +V R
Sbjct: 62 ---------FGYDENNRYPDAPPVPKTVLINPVIRPLSDEIDAGWEGCLSIPGMRGIVPR 112
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ I G D+ G I +A G+ AR++QHECDHLDG LY
Sbjct: 113 WAKIHYEGFDQFGNKISRNADGFHARVVQHECDHLDGILY 152
>gi|428210480|ref|YP_007094833.1| peptide deformylase [Chroococcidiopsis thermalis PCC 7203]
gi|428012401|gb|AFY90964.1| peptide deformylase [Chroococcidiopsis thermalis PCC 7203]
Length = 171
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 96/163 (58%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI+Q G+P+L + A V ++ RIQ +IDD++ ++ A GVG+AAPQ+GV RI ++
Sbjct: 2 EIIQLGNPILRDKAEFV--ADVKDPRIQQLIDDLLITVKQANGVGIAAPQVGVSDRIFIV 59
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ Y E++ ++NPK+ +SD + +EGCLS+ G R V R
Sbjct: 60 A-SRPNPRYPHAPEMEP--------TPMINPKILARSDESEKGWEGCLSIPGIRGSVPRD 110
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
IEV DR G+ K + T + ARI QHE DHLDG +++D++
Sbjct: 111 RAIEVEYSDRYGKLHKQELTDFVARIFQHELDHLDGIVFLDRL 153
>gi|352080153|ref|ZP_08951222.1| peptide deformylase [Rhodanobacter sp. 2APBS1]
gi|389796197|ref|ZP_10199253.1| peptide deformylase [Rhodanobacter sp. 116-2]
gi|351684862|gb|EHA67931.1| peptide deformylase [Rhodanobacter sp. 2APBS1]
gi|388448837|gb|EIM04817.1| peptide deformylase [Rhodanobacter sp. 116-2]
Length = 179
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V +GS + +I DM + M++A GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIAPLVPAAMLGSAELDALIADMFETMQAADGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP + S +EGCLSV G R V RY
Sbjct: 64 -------GFEHSERYPDAPEVPRTIL--LNPVITPLSQDMEEGWEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G I A G+ AR++QHECDHL G LY ++
Sbjct: 115 TLIRYEGIDPQGARIDRRAEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|302533115|ref|ZP_07285457.1| peptide deformylase [Streptomyces sp. C]
gi|302442010|gb|EFL13826.1| peptide deformylase [Streptomyces sp. C]
Length = 182
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
G+PVLH P EV + G E + +I+DM M +A GVGLAA QIG LR+ V +
Sbjct: 20 GEPVLHSPCAEVT--DFGPE-LDRLIEDMFATMYAAQGVGLAANQIGTGLRVFVYD---- 72
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ ++NP+L + EGCLS+ G A R+ V
Sbjct: 73 ---CPDDEDVRHVGH-------VVNPRLVEADGDEFRGPEGCLSLPGLEAGTVRFDRAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
G+ DG P++V+ TG+ AR LQHECDHLDGT+Y D++
Sbjct: 123 EGVTSDGAPVRVEGTGFFARCLQHECDHLDGTVYADRVT 161
>gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799]
gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799]
Length = 175
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I Q G+P+L + AR V + + IQ + M+ M +A GVG+AAPQ+ PLR++++
Sbjct: 6 IAQLGEPILRQRARPVS--DATAAEIQTLWQRMLVTMEAAGGVGIAAPQVFEPLRLMIIA 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
S+ + D D ++++NP++ S F EGCLSV G R V R
Sbjct: 64 ---------SRPNARYPDAPQMDPVVLINPEILNTSGELVSFVEGCLSVPGIRGTVRRPD 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++EV LD GQP ++ +G+ ARI HE DHL+G ++D++
Sbjct: 115 NVEVRYLDTQGQPQQLSLSGFPARIFLHEFDHLEGRTFLDQV 156
>gi|196234527|ref|ZP_03133350.1| peptide deformylase [Chthoniobacter flavus Ellin428]
gi|196221407|gb|EDY15954.1| peptide deformylase [Chthoniobacter flavus Ellin428]
Length = 187
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 100/171 (58%), Gaps = 11/171 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV+ G+PVL E REV + E+I+ + DM++ MR+A GVGLAA QIGVP+++ V+
Sbjct: 4 EIVKYGNPVLREKGREVKDVD---EKIKQLSVDMLETMRAANGVGLAAQQIGVPIQMTVI 60
Query: 137 E----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ + + + + +E+ + P L++LNP LK ++ + EGCLS A
Sbjct: 61 DVAGIEDRPSAMWINDKEVPIEEHMP---LVLLNPVLKFSEEKES-GNEGCLSFPDITAE 116
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT 243
+ R ++ T DG+ I+ +A G AR LQHE DHL G L++D+M T
Sbjct: 117 ITRSSGVQCTATLLDGKKIEFEAAGLLARALQHETDHLHGVLFIDRMNAAT 167
>gi|449015929|dbj|BAM79331.1| polypeptide deformylase [Cyanidioschyzon merolae strain 10D]
Length = 264
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 100/182 (54%), Gaps = 26/182 (14%)
Query: 73 AKLPEIVQAGDP---------VLHEPAREV----DPGEIGSERIQNIIDDMVKVMRSAPG 119
+++PE+V+ DP ++ P R + +P + + + ++ DM KVM ++ G
Sbjct: 72 SRVPELVEEVDPGIVPGVSLRIVRYPHRVLRAPNEPVTVFDDALLKLVRDMFKVMYASRG 131
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF 179
VGLAAPQ+G+ R++V + ++ S+ + ++NP++ ++S+ T
Sbjct: 132 VGLAAPQVGINKRVMVFNPKGDPRAWLSE-------------VALVNPRIIERSEATEEG 178
Query: 180 FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
EGCLS G +ER L I+V + +G+ +V GW ARI QHE DHLDG L++D+M
Sbjct: 179 MEGCLSFPGVSGDIERSLMIKVEAMKPNGKRFQVKYQGWTARIFQHEYDHLDGVLFIDRM 238
Query: 240 VP 241
P
Sbjct: 239 KP 240
>gi|408379935|ref|ZP_11177526.1| peptide deformylase [Agrobacterium albertimagni AOL15]
gi|407746312|gb|EKF57837.1| peptide deformylase [Agrobacterium albertimagni AOL15]
Length = 170
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + + P E ++ +IDDM++ M APG+GLAA Q+GVP R++V++ KE
Sbjct: 11 DPLLRQVSA---PIERVDAELEQLIDDMLETMYEAPGIGLAAIQVGVPRRLLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P L+ I NP++ K SD +++ EGCLS+ Y A VER I V
Sbjct: 67 ------------GEEPAPLVYI-NPEIIKSSDERSVYEEGCLSIPDYYAEVERPASITVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ RDG+ +A G A LQHE DHL+G L++D +
Sbjct: 114 SIGRDGKETVTEADGLLATCLQHEIDHLNGVLFIDHI 150
>gi|209522380|ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160]
gi|209497186|gb|EDZ97427.1| peptide deformylase [Burkholderia sp. H160]
Length = 177
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L A VD + + ++ DM + M +A G GLAAPQIGV L++++
Sbjct: 4 DILKMGDPRLLRIAEPVD--HFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E D P +++NP + S +EGCLSV G R VV R+
Sbjct: 62 -------GFGSNERYP--DAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D+ G PI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIRYHGFDQFGNPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|254468385|ref|ZP_05081791.1| peptide deformylase [beta proteobacterium KB13]
gi|207087195|gb|EDZ64478.1| peptide deformylase [beta proteobacterium KB13]
Length = 162
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 20/160 (12%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
PE+++ +PV E E + +IDDM + M++ G GLAAPQIGV R+++
Sbjct: 4 PELLKVSEPVDFE-----------KEDLTTLIDDMKETMKANDGAGLAAPQIGVFKRLVI 52
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ + + D PF +L +NP + SD +EGCLSV G R VV R
Sbjct: 53 F-------GFDTNDRYPEADSVPFTVL--INPIITPLSDEKENGWEGCLSVPGLRGVVPR 103
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ I+ G D +G I+ + + AR++QHECDHLDG LY
Sbjct: 104 FTHIKYEGYDAEGNKIEREVEDFHARVVQHECDHLDGILY 143
>gi|424068911|ref|ZP_17806359.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407996020|gb|EKG36517.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 179
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V GS + +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 4 KILKMGDERLLRIAPPVPAEMFGSRELNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + +EGCLSV G R +V+RY
Sbjct: 64 -------GFERNERYPEAEAVPQTIL--INPLITPLGPTLEEGWEGCLSVPGLRGMVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 QSIRYEGFDPQGQPIERVAQGFHARVVQHECDHLIGRLYPSRIT 158
>gi|422637479|ref|ZP_16700911.1| peptide deformylase [Pseudomonas syringae Cit 7]
gi|440741984|ref|ZP_20921314.1| peptide deformylase [Pseudomonas syringae BRIP39023]
gi|330949875|gb|EGH50135.1| peptide deformylase [Pseudomonas syringae Cit 7]
gi|440378070|gb|ELQ14700.1| peptide deformylase [Pseudomonas syringae BRIP39023]
Length = 179
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS + +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPADMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L +NP + S +EGCLSV G R +V+RY
Sbjct: 64 ------GFERNERYPQAEAVPQTIL--INPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQPI A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPQGQPIVRVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|374586241|ref|ZP_09659333.1| Peptide deformylase [Leptonema illini DSM 21528]
gi|373875102|gb|EHQ07096.1| Peptide deformylase [Leptonema illini DSM 21528]
Length = 176
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP+L + +V E+ S+ I+N+I D+ M+ A G+GLAAPQIGV R+++
Sbjct: 6 ILKLGDPLLRRRSVDVPLTELRSKEIKNLIRDLRDTMKDAGGIGLAAPQIGVLKRVVI-- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ ++ E + D++ + +++NP+++ F+EGCLS+ G R VER
Sbjct: 64 -----VGFEKSE--RYPDQKGIEERVLINPEIEALDGPGEGFWEGCLSIPGMRGFVERPR 116
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I+++ D D + G+ A + QHECDHLDG LYVD++
Sbjct: 117 KIKLSFYDTDENRHEEIIEGFDAVVYQHECDHLDGMLYVDRL 158
>gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4]
gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4]
Length = 176
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L E ++ ++ + ER+ IDDM++ M APG+GLAA QI VP R++V++ +KE
Sbjct: 15 DPLLREVSQPIERIDADLERL---IDDMLETMYDAPGIGLAAVQIAVPRRLLVIDVSKE- 70
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D++P L+ +NP++ S + + EGCLS+ Y A VER + V
Sbjct: 71 ----------GEDKQP---LVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVK 117
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LDR G+ ++A G A LQHE DHL+GTL++D +
Sbjct: 118 SLDRHGKEQVIEADGLLATCLQHEIDHLNGTLFIDHI 154
>gi|389784303|ref|ZP_10195457.1| peptide deformylase [Rhodanobacter spathiphylli B39]
gi|388433217|gb|EIL90184.1| peptide deformylase [Rhodanobacter spathiphylli B39]
Length = 178
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V IG+ + +I DM M +A GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRVAPSVPAAMIGTAELDALIVDMFDTMHAADGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + + E A R ++LNP + S +EGCLSV G R V RY
Sbjct: 64 G----FDNNERYPEAPAVPR-----TILLNPVITPLSQDMEEGWEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G+D G+ I A G+ AR++QHECDHL G LY ++
Sbjct: 115 SLIRYQGIDPQGERIDRRAEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|311113462|ref|YP_003984684.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
gi|310944956|gb|ADP41250.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
Length = 190
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 22/170 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V G+PVLH PA V + + + ++ DM + M +A GVGLAAPQIGV LR+
Sbjct: 6 VVIYGNPVLHRPAAPVTAFD---DEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVF--- 59
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
+YQ + E R I+NP+L A EGCLS GY
Sbjct: 60 ------TYQMENEDGVPARG-----CIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
++R + V G D +G P++ +ATGW AR +QHE DHLDG LYV+++ K
Sbjct: 109 LKRAEWVTVNGFDVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNKK 158
>gi|440225369|ref|YP_007332460.1| peptide deformylase [Rhizobium tropici CIAT 899]
gi|440036880|gb|AGB69914.1| peptide deformylase [Rhizobium tropici CIAT 899]
Length = 171
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ ++ +I +E IQ + DDM++ M APG+GLAA QIGVP R++V++ +E
Sbjct: 11 DPLLRQASKPIE--QIDTE-IQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVARE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ P L+ +NP++ SD +++ EGCLS+ Y A VER + V
Sbjct: 67 ----------GEEKAP---LVFINPEIVASSDERSVYEEGCLSIPDYYAEVERPARVTVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ +A G A +QHE DHL+G L++D +MV K F
Sbjct: 114 HLDRNGKEQLTEAEGLLATCVQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|399523924|ref|ZP_10764520.1| peptide deformylase [Atopobium sp. ICM58]
gi|398375009|gb|EJN52492.1| peptide deformylase [Atopobium sp. ICM58]
Length = 212
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 91/190 (47%), Gaps = 41/190 (21%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH R DP E + +++ DM+ M APGVGLAAPQ+GV L++ V
Sbjct: 6 ICITGEPVLH---RIADPVERFDSSLTDLVADMIDTMHEAPGVGLAAPQVGVGLQLFVW- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL----------------MILNPKLKKKSDRTALFF- 180
SY+ FDRR D L +++NP L D
Sbjct: 62 ------SYRGG---GPFDRRYRDALALDLAPTLGFNDAMSGVVVNPTLDLVWDEAGAGAI 112
Query: 181 -----------EGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDH 229
EGCLSV G + R L + G D +G+PI V A GW ARI QHE DH
Sbjct: 113 LPAQPDIADEAEGCLSVPGVTYPLRRALGAILRGYDANGRPITVAARGWLARIFQHEYDH 172
Query: 230 LDGTLYVDKM 239
L GTLYVD++
Sbjct: 173 LRGTLYVDRL 182
>gi|289625972|ref|ZP_06458926.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289647973|ref|ZP_06479316.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422584556|ref|ZP_16659662.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|298157467|gb|EFH98550.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|330869369|gb|EGH04078.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 179
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS + +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQLVIFG 64
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ Q++ + P L+ LNP L++ +EGCLSV G R +V RY
Sbjct: 65 FERSERYPQAEAVPQTILLNP--LITPLNPSLEEG-------WEGCLSVPGLRGMVNRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D DGQ I+ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPDGQRIERVAHGFHARVVQHECDHLIGRLYPSRIT 158
>gi|440738507|ref|ZP_20918037.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|447919231|ref|YP_007399799.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
gi|440380963|gb|ELQ17511.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|445203094|gb|AGE28303.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
Length = 168
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + ++++ ++DDM + M APG+GLAA Q+ V LR++V++ + + + E K +
Sbjct: 20 PVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLS------EDRSEPKVY 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV + VER L +++ LDRDG+P ++
Sbjct: 74 ----------INPEFEPLTDEMGEYQEGCLSVPEFYESVERPLRVKIKALDRDGKPFELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|148240675|ref|YP_001226062.1| peptide deformylase [Synechococcus sp. WH 7803]
gi|147849214|emb|CAK24765.1| Peptide deformylase [Synechococcus sp. WH 7803]
Length = 177
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 9/162 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ G P L + AR+++ G++++Q +IDD+++ + G GLAAPQI P R++V+
Sbjct: 6 VLRLGHPALRQRARDIEDEVFGTQQLQTLIDDLLETKAARSGAGLAAPQIDEPWRVVVV- 64
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + P +++NP++ S+ T+ +EGCLSV G R VER+
Sbjct: 65 --------GMGANPRYPEAPPVPERVLINPEITPLSEATSAGWEGCLSVPGLRGEVERWQ 116
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I ++ D +G + G+ AR++QHECDHLDG L+ D++
Sbjct: 117 RIHLSWRDPNGGWHHEELEGFHARVVQHECDHLDGVLFPDRL 158
>gi|183220960|ref|YP_001838956.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|189911055|ref|YP_001962610.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|238687791|sp|B0SHH1.1|DEF_LEPBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238687819|sp|B0SQM2.1|DEF_LEPBP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|167775731|gb|ABZ94032.1| N-formylmethionyl-tRNA deformylase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779382|gb|ABZ97680.1| Peptide deformylase (PDF; Polypeptide deformylase) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 179
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ G+P+L + + +V EI ++ + +I DM + MR A GVGLAAPQIGV +++V+
Sbjct: 5 KILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKKLVVV 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ Y E+ +ILNP++ S F+EGCLSV G R VER
Sbjct: 65 GQEDDNERYPGTPEVPN--------QIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERP 116
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENLD 251
I + D + G++A +LQHECDHL G LYVD++ K F E++D
Sbjct: 117 NKIRMKWRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTKLFGYNEDID 172
>gi|399044438|ref|ZP_10738086.1| peptide deformylase [Rhizobium sp. CF122]
gi|398057217|gb|EJL49191.1| peptide deformylase [Rhizobium sp. CF122]
Length = 178
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ + E Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 17 DPLLRQVSKLI---ERVDADFQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSRE- 72
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NP++ SD +++ EGCLS+ Y A VER + V
Sbjct: 73 ----------GEEKQP---LVFVNPEILASSDERSVYEEGCLSIPDYYAEVERPAAVTVK 119
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
LDRDG+ V A G A LQHE DHL+G L++D
Sbjct: 120 YLDRDGKEQTVQADGLLATCLQHEIDHLNGVLFID 154
>gi|402701205|ref|ZP_10849184.1| peptide deformylase [Pseudomonas fragi A22]
Length = 168
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 87/145 (60%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ +IDDM + M APG+GLAA Q+ V RI+V++ ++
Sbjct: 20 PVAVVDDEVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSE-------------- 65
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
DR + L+++NP+L+ +D + EGCLSV GY V+R +++ LDRDG+P ++
Sbjct: 66 DRS--EPLVLINPELEMLTDEMGQYQEGCLSVPGYYENVDRPQRVKIKALDRDGKPFEMI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|319763298|ref|YP_004127235.1| peptide deformylase [Alicycliphilus denitrificans BC]
gi|330825493|ref|YP_004388796.1| peptide deformylase [Alicycliphilus denitrificans K601]
gi|317117859|gb|ADV00348.1| peptide deformylase [Alicycliphilus denitrificans BC]
gi|329310865|gb|AEB85280.1| peptide deformylase [Alicycliphilus denitrificans K601]
Length = 179
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L AR V ++ + ++ D++ M +A G GLAAPQIGV L+++V
Sbjct: 6 ILKMGDPRLLRVARPVT--RFDTDELHGLLADLLDTMHAANGAGLAAPQIGVDLQVVVFG 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
Y + +++NP + D +L +EGCLSV G R +V R+
Sbjct: 64 SGAPNPRYPDAPVVPR--------TVLINPVVTPIGDEESLDWEGCLSVPGMRGMVPRWQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ TG D G+PI +G+ AR++QHECDHL G LY +M
Sbjct: 116 TVRYTGFDVRGEPIDRTVSGFHARVVQHECDHLWGKLYPMRM 157
>gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510]
gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510]
Length = 190
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 15/163 (9%)
Query: 78 IVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
I + G+P+L + A+ + DP + R+ DM+ M APGVGLAAPQ+ RIIV
Sbjct: 6 IARMGNPILRQIAQPIADPTDPAIARLAA---DMIATMLDAPGVGLAAPQVSESCRIIVF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ EE+ +++NP ++ +D AL +EGCLS+ G R +V R+
Sbjct: 63 RVPADR---GEGEEVANT--------VLVNPVIEPLTDDMALGWEGCLSIPGLRGLVPRH 111
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G DG I+ +A+G+ AR++QHE DHLDG LY+D+M
Sbjct: 112 TRIRYRGHGLDGARIEREASGFHARVVQHEVDHLDGVLYLDRM 154
>gi|124267003|ref|YP_001021007.1| peptide deformylase [Methylibium petroleiphilum PM1]
gi|124259778|gb|ABM94772.1| Peptide deformylase [Methylibium petroleiphilum PM1]
Length = 177
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 17/162 (10%)
Query: 77 EIVQAGDPVL---HEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
+I++ GDP L P RE D + + +I+DM M +A G GLAAPQIGV L++
Sbjct: 5 DILKMGDPRLLRIAHPVREFD-----TPALHALIEDMFDTMEAANGAGLAAPQIGVDLQL 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
++ TK ++ P +++NP++ S+ +EGCLSV G R VV
Sbjct: 60 VIFGFTKSERYPEAP---------PVPRTVLINPQITPLSEDLEDGWEGCLSVPGLRGVV 110
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R+ I TG D G+ I+ +A G+ AR++QHECDHL G LY
Sbjct: 111 PRHQRIRYTGFDPQGRRIEREAEGFHARVVQHECDHLAGVLY 152
>gi|398891391|ref|ZP_10644767.1| peptide deformylase [Pseudomonas sp. GM55]
gi|398187072|gb|EJM74426.1| peptide deformylase [Pseudomonas sp. GM55]
Length = 168
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NPKL+ +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RTEPRVF----------INPKLETLTDEMGQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++V LDRDGQP ++ A A +QHECDHL+G L+VD +
Sbjct: 107 RVKVKALDRDGQPYELIAEDLLAVCIQHECDHLNGKLFVDYL 148
>gi|237654289|ref|YP_002890603.1| peptide deformylase [Thauera sp. MZ1T]
gi|237625536|gb|ACR02226.1| peptide deformylase [Thauera sp. MZ1T]
Length = 174
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GD L +PA V GE G+ + +I+D+ M + GVGLAAPQIGV L++++
Sbjct: 6 LLRMGDARLLQPAAPV--GEFGTPALAALIEDLFDTMAAHGGVGLAAPQIGVGLQVVIF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E D P ++LNP + ++ +EGCLSV G R +V R
Sbjct: 63 ------GFERSERYP--DAAPVPRTILLNPVIVPLTEEREEGWEGCLSVPGLRGMVPRAT 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I TG G+PI+ A G+ AR++QHECDHL G LY
Sbjct: 115 RIRYTGYTPAGEPIERFAEGFHARVVQHECDHLAGVLY 152
>gi|421749376|ref|ZP_16186824.1| peptide deformylase [Cupriavidus necator HPC(L)]
gi|409771767|gb|EKN53967.1| peptide deformylase [Cupriavidus necator HPC(L)]
Length = 178
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 25/166 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L + AR V + ++ +I+DM M A G GLAAPQIGV L++++
Sbjct: 4 DILKMGDPRLLQAARPVQ--RFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
F+R P +++NP+L SD +EGCLSV G
Sbjct: 62 ----------------GFERNPRYPDAPQVPKTVLINPELTPLSDEMEDGWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R +V R+ + TG D GQ I+ A G+ AR++QHECDHL G LY
Sbjct: 106 RGMVPRHTSLRYTGFDLMGQRIERVAEGFHARVVQHECDHLRGILY 151
>gi|398952867|ref|ZP_10675034.1| peptide deformylase [Pseudomonas sp. GM33]
gi|398154537|gb|EJM43006.1| peptide deformylase [Pseudomonas sp. GM33]
Length = 179
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S FEGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPIMEEGFEGCLSVPGLRGAVQRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G+PI A+G AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGVDPKGEPIVRVASGVHARVVQHECDHLIGRLYPSRI 157
>gi|429215100|ref|ZP_19206262.1| peptide deformylase [Pseudomonas sp. M1]
gi|428154327|gb|EKX00878.1| peptide deformylase [Pseudomonas sp. M1]
Length = 179
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V IGS +Q +IDDM M A GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRVAPPVPAQMIGSAELQRLIDDMFDTMHHAGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E P +L LNP + + +EGCLSV G R V RY
Sbjct: 64 -------GFERSERYPDAPAVPPTIL--LNPVITPLGEEMEEGWEGCLSVPGLRGAVNRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I GLD GQPI G+ AR++QHECDHL G LY ++
Sbjct: 115 KRIRYQGLDPQGQPIDRTVEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|119713702|gb|ABL97752.1| peptide deformylase [uncultured marine bacterium EB0_41B09]
Length = 163
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 15/156 (9%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
G+P+L + A +V+ + + I +I DM+K M+ A G GLAAPQ+G +++++ K
Sbjct: 2 GNPILLKEAEKVE--KFDTPEIHELIKDMIKTMKDAQGAGLAAPQVGESIQLVIFGVDKN 59
Query: 142 YISYQSKEEIKAFDRRPFDLLM--ILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
Y EE+ PF +L+ ++ P ++K D +EGCLSV G R VV RY I
Sbjct: 60 E-RYPEAEEV------PFTVLINPVITPLNQEKEDD----WEGCLSVPGMRGVVPRYKTI 108
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
G D+ G I D G+ AR++QHECDHL G LY
Sbjct: 109 NYKGFDQYGNEIDRDVEGFHARVVQHECDHLFGILY 144
>gi|428220307|ref|YP_007104477.1| peptide deformylase [Synechococcus sp. PCC 7502]
gi|427993647|gb|AFY72342.1| peptide deformylase [Synechococcus sp. PCC 7502]
Length = 184
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 13/168 (7%)
Query: 73 AKLPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K +I Q G+PVL A + DP +E +Q +I ++K ++ + GVG+AAPQ+G
Sbjct: 6 TKTLDICQVGNPVLRLTAEPIADPQ---AEVVQKLIAGLIKTLKQSNGVGIAAPQVGRSQ 62
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
R++V+ S+ + A + P L+ NP ++ S+ T +EGCLSV G R
Sbjct: 63 RLLVIA------SHPNARYPHAPNMEPLPLI---NPVIRSHSENTEKDWEGCLSVPGIRG 113
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+V RY IEV DR G+ TG+ ARILQHE DHL+G +++D++
Sbjct: 114 LVPRYDSIEVEYCDRHGKTQTTTFTGFVARILQHEYDHLEGKVFLDRV 161
>gi|121610540|ref|YP_998347.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
gi|121555180|gb|ABM59329.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
Length = 186
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 83/158 (52%), Gaps = 10/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L AR V +E + ++ DM+ M A G GLAAPQIGV L+++V
Sbjct: 6 ILKMGDPRLLRIARPVT--GFDTEALHGLVRDMLDTMHDANGAGLAAPQIGVDLQLVVFG 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ Y R P L ++LNP + +EGCLSV G R +V R+
Sbjct: 64 SGEHNPRYPG--------RPPVPLTVLLNPVITPLGQDEKEDWEGCLSVPGLRGMVPRWS 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I TG+D G PI G+ AR++QHECDHL G LY
Sbjct: 116 RIRYTGVDPYGHPIDRSVDGFHARVVQHECDHLVGKLY 153
>gi|430001987|emb|CCF17767.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Rhizobium sp.]
Length = 170
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ V+ ++ SE I + DDM++ M APG+GLAA QIGVP R++V++ +KE
Sbjct: 11 DPILRQVSKPVE--QVDSE-ITRLADDMLETMYDAPGIGLAAIQIGVPRRLLVIDVSKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+E KA + +NP++ SD +++ EGCLS+ Y A VER + V
Sbjct: 67 ------DEDKAPQ-------LFINPQIVASSDERSVYEEGCLSIPDYYAEVERPAAVTVD 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
+DR+G+ + A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YIDREGKQQTLQADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|408479915|ref|ZP_11186134.1| peptide deformylase [Pseudomonas sp. R81]
Length = 168
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + ++++ ++DDM + M APG+GLAA Q+ V LR++V++ + + + E K +
Sbjct: 20 PVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLS------EDRSEPKVY 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV + VER L +++ LDRDG+P ++
Sbjct: 74 ----------INPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPFELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|333371235|ref|ZP_08463194.1| peptide deformylase [Desmospora sp. 8437]
gi|332976422|gb|EGK13270.1| peptide deformylase [Desmospora sp. 8437]
Length = 156
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 85/161 (52%), Gaps = 22/161 (13%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV DP+L E AR P +ER+ ++DDM M APGVGLAAPQ+G+ R+IV+
Sbjct: 5 KIVLVPDPILKEKAR---PVTKFNERLHKLLDDMADTMYDAPGVGLAAPQVGISKRVIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D L+ +NP+L K EGCLS+ G V R
Sbjct: 62 DDGN-------------------GLIEAVNPELFDKEGEQLAPPEGCLSIPGLLGEVRRA 102
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ + DR GQ +++A G+ ARILQHE DHL+G L+ D
Sbjct: 103 EKVRLKARDRQGQFFELEAEGYLARILQHEVDHLNGILFTD 143
>gi|453329549|dbj|GAC88393.1| polypeptide deformylase [Gluconobacter thailandicus NBRC 3255]
Length = 170
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 75 LPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
L +I + G PVLH+ A V DP + I+ +I DM++ M A G GLAAPQ+ V LR+
Sbjct: 3 LLKIARMGHPVLHQIAEPVSDPT---APEIRRLIKDMLETMADARGAGLAAPQVHVSLRL 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
+ +S + + +++NP++ D L EGCLS+ G R V
Sbjct: 60 FIYHVPANRVSDPEQAMLPR---------VLINPEIIPVGDEMMLCSEGCLSIPGLRGDV 110
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
RY + GLD +G P++ +A G+ A +LQHE DHLDG LY
Sbjct: 111 PRYAKVRYRGLDENGDPVEGEAVGFHANVLQHENDHLDGVLY 152
>gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6]
gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6]
Length = 212
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 87/145 (60%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + ++++ ++DDM + M APG+GLAA Q+ V LR++V++ +++ + E + +
Sbjct: 64 PVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLSED------RSEPRVY 117
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV + VER L +++ LDRDG+P ++
Sbjct: 118 ----------INPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPFEMI 167
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 168 AEGLLAVCIQHECDHLNGKLFVDYL 192
>gi|365839609|ref|ZP_09380844.1| peptide deformylase [Anaeroglobus geminatus F0357]
gi|364564450|gb|EHM42217.1| peptide deformylase [Anaeroglobus geminatus F0357]
Length = 155
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 22/163 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+AG PVL+ A+ P + ++RI++++DDM M +A GVGLAAPQI L++IVL+
Sbjct: 6 IVKAGAPVLNATAK---PVKAITKRIKHLLDDMAATMYAAEGVGLAAPQINESLQLIVLD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D L+ ++NP+L + S+ EGCLSV G V R+
Sbjct: 63 DGN-------------------GLIELINPELLEISEEMEYGPEGCLSVPGIYGEVRRHT 103
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I+V +R G+ ++ + G+ ARI QHE DHL G L+ +K V
Sbjct: 104 KIKVRAQNRRGEAVEYEPEGFLARIFQHEMDHLAGHLFTEKAV 146
>gi|421588144|ref|ZP_16033464.1| peptide deformylase [Rhizobium sp. Pop5]
gi|403707226|gb|EJZ22278.1| peptide deformylase [Rhizobium sp. Pop5]
Length = 171
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ ++ ++ +Q + DDM++ M APG+GLAA QIGVP R++V++ ++E
Sbjct: 11 DPLLRQLSKPIERVDVD---LQRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVSREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ SD +++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVTSSDERSVYEEGCLSIPDYYAEVERPAVVSVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 YLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|313893407|ref|ZP_07826979.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412]
gi|313442048|gb|EFR60468.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412]
Length = 162
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 95/162 (58%), Gaps = 21/162 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++V+AG PVL + A +P E +++++ +IDDM + M GVGLAAPQ+ V RIIV+
Sbjct: 5 DVVKAGHPVLKQVA---EPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVSKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D + L+ ++NP++ ++ + + EGCLSV GY VER+
Sbjct: 62 DD-----------------QVGSGLIALINPEITH-AEGSQVGPEGCLSVPGYYGDVERF 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I V G+D + + + A G+ ARI QHE DHL+G L+++K
Sbjct: 104 NKITVKGIDPHNKKVTIKAEGFLARIFQHEIDHLEGHLFIEK 145
>gi|324997314|ref|ZP_08118426.1| peptide deformylase [Pseudonocardia sp. P1]
Length = 193
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 97/179 (54%), Gaps = 23/179 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I GDPVLH P R V+ + G I+ ++DDM + M +A GVGLAA Q+GV LR+ V
Sbjct: 6 IRMVGDPVLHRPTRPVEQVDDG---IRTLVDDMFETMAAANGVGLAANQVGVDLRLFV-- 60
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF------FEGCLSVNGYRA 191
Y +E RR +++NP L+ S+R + EGCLSV G
Sbjct: 61 -------YDCPDEETRTMRRG----LVVNPVLET-SERPQVMPDPDDDEEGCLSVPGESY 108
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENL 250
R VTG D DG+P+ V+ G+ AR LQHE DHLDG LY+D+++ + + + +
Sbjct: 109 PTGRADWARVTGTDLDGEPVDVEGRGFFARCLQHETDHLDGHLYLDRLMGRNQKAAKKM 167
>gi|385799657|ref|YP_005836061.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
Length = 150
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 22/166 (13%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L ++ + GDPVL A+E+D +++ +ID+M + M + GVGLAAPQIG+ RI
Sbjct: 3 LLKVREIGDPVLRTKAKEIDEV---NKKTNELIDNMFETMYAEDGVGLAAPQIGMLKRIA 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V+ D R + ++++NP++ +K + A+ EGCLS+ G V
Sbjct: 60 VV------------------DIREGNKVILINPEIIEKEGK-AIMEEGCLSIPGETGDVI 100
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
R I+V L+R G+ + A G++AR +QHE DHLDG L+VDK++
Sbjct: 101 RAEKIKVKSLNRKGKEVTFLAEGFEARAIQHEIDHLDGILFVDKII 146
>gi|420240715|ref|ZP_14744917.1| peptide deformylase [Rhizobium sp. CF080]
gi|398075470|gb|EJL66583.1| peptide deformylase [Rhizobium sp. CF080]
Length = 171
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E + + DDM++ M APG+GLAA QIGVP R++V++ +E
Sbjct: 11 DPILRQVSK---PIERVDAELLKLADDMLETMYDAPGIGLAAIQIGVPRRLLVVDVAREG 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
Q + + +NP++ + SD A++ EGCLS+ Y A VER + V
Sbjct: 68 EEKQPQ--------------VFINPEIVRSSDEIAVYEEGCLSIPEYYAEVERPATVSVR 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
L RDG+ V+A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 HLGRDGKEYVVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|333898252|ref|YP_004472125.1| peptide deformylase [Pseudomonas fulva 12-X]
gi|333113517|gb|AEF20031.1| Peptide deformylase [Pseudomonas fulva 12-X]
Length = 168
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + ++ +IDDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDALRQLIDDMFETMYDAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+S E L+ +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 -----LSEDKSEP-----------LVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKINALDRDGKPFEMIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|359800833|ref|ZP_09303369.1| peptide deformylase [Achromobacter arsenitoxydans SY8]
gi|359361215|gb|EHK62976.1| peptide deformylase [Achromobacter arsenitoxydans SY8]
Length = 177
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + + +IDDM + M +A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E D P ++ NP + SD +EGCLSV G R +V RY
Sbjct: 62 ------GFDRNERYP--DAPPVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGMVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I +G D GQ I+ +A G+ AR++QHECDHL G LY ++
Sbjct: 114 RIRYSGRDPYGQLIEREAEGFHARVVQHECDHLIGRLYPSRI 155
>gi|330806738|ref|YP_004351200.1| peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378948015|ref|YP_005205503.1| hypothetical protein PSF113_0073 [Pseudomonas fluorescens F113]
gi|423694583|ref|ZP_17669073.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359758029|gb|AEV60108.1| Def [Pseudomonas fluorescens F113]
gi|388004381|gb|EIK65694.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
Length = 168
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFETLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus erythropolis SK121]
gi|453069311|ref|ZP_21972576.1| peptide deformylase [Rhodococcus qingshengii BKS 20-40]
gi|229319386|gb|EEN85223.1| peptide deformylase [Rhodococcus erythropolis SK121]
gi|452763717|gb|EME21993.1| peptide deformylase [Rhodococcus qingshengii BKS 20-40]
Length = 199
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 96/185 (51%), Gaps = 20/185 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH + +P I +I DM + M +A GVGLAA Q+GVPLR+ V
Sbjct: 10 GDPVLH---KATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVPLRVFV------ 60
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVERY 196
Y + ++ +RR +++NP L+ + FEGCLSV G + R
Sbjct: 61 ---YDCPGDDRSSERR---RGVVVNPVLETSEIPQTMPDPDEDFEGCLSVPGEQFPTGRA 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+VTG D DG PI+V+ TG+ AR+LQHE HLDG LY D ++ + R + +
Sbjct: 115 DWAKVTGTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVLIGRNARAAKKIIKRSGW 174
Query: 257 GCPKL 261
G P L
Sbjct: 175 GKPGL 179
>gi|423092858|ref|ZP_17080654.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
gi|397882446|gb|EJK98933.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
Length = 168
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFETLTDEMEQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGQPYEMIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|359146840|ref|ZP_09180297.1| polypeptide deformylase [Streptomyces sp. S4]
Length = 247
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 86/156 (55%), Gaps = 17/156 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL P EV + G ++ +++D+ M +A GVGLAA QIGVPLR+ V + +
Sbjct: 84 GDPVLAAPCAEVT--DFGPA-LERLVEDLFATMYAARGVGLAANQIGVPLRVFVHDCPDD 140
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
DRR L ++NP+L + EGCLS+ G A ERY V
Sbjct: 141 E------------DRR--HLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVV 186
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
G+D G+P V TG+ AR LQHE DHLDGTLYVD
Sbjct: 187 EGVDLRGEPRTVHGTGFFARCLQHESDHLDGTLYVD 222
>gi|282850137|ref|ZP_06259516.1| peptide deformylase [Veillonella parvula ATCC 17745]
gi|416999239|ref|ZP_11939908.1| peptide deformylase [Veillonella parvula ACS-068-V-Sch12]
gi|282579630|gb|EFB85034.1| peptide deformylase [Veillonella parvula ATCC 17745]
gi|333977392|gb|EGL78251.1| peptide deformylase [Veillonella parvula ACS-068-V-Sch12]
Length = 162
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 21/162 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++V+AG PVL + A +P E +++++ +IDDM + M GVGLAAPQ+ V RIIV+
Sbjct: 5 DVVKAGHPVLKQVA---EPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVAKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D + L+ ++NP++ ++ + + EGCLSV GY VER+
Sbjct: 62 DD-----------------QSGSGLIALINPEITH-AEGSQVGPEGCLSVPGYFGDVERF 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ V G+D + + + A G+ ARI QHE DHL+G L+++K
Sbjct: 104 NKVTVKGIDPHNKKVTIKAEGFLARIFQHEIDHLEGHLFIEK 145
>gi|392419120|ref|YP_006455724.1| peptide deformylase [Pseudomonas stutzeri CCUG 29243]
gi|390981308|gb|AFM31301.1| peptide deformylase [Pseudomonas stutzeri CCUG 29243]
Length = 168
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + I+ +IDDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDEIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFESLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGKPYEMVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 176
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E ++ + DDM+ M APG+GLAA QIG PLR++V++ KE
Sbjct: 11 DPILRQVSK---PVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D P + I NP++ + +D +++ EGCLS+ Y A VER + V
Sbjct: 67 ------------DETPAPHVFI-NPEILESADARSVYEEGCLSIPDYYAEVERPASVRVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
LDRDG+ +++A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YLDRDGKLQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFK 163
>gi|424073341|ref|ZP_17810759.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996322|gb|EKG36801.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 179
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V GS + +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 4 KILKMGDERLLRIAPPVPAEMFGSSELDALIADMFETMHSVGGVGLAAPQIGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + +EGCLSV G R +V+RY
Sbjct: 64 -------GFERNERYPEAEAVPQTIL--INPLITPLGPTLEEGWEGCLSVPGLRGMVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 115 QSIRYEGFDPQGQPIERVAQGFHARVVQHECDHLIGRLYPSRIT 158
>gi|406986749|gb|EKE07270.1| hypothetical protein ACD_18C00137G0001 [uncultured bacterium]
Length = 165
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 12/155 (7%)
Query: 86 LHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISY 145
L + + EVD + E Q + DDM+K M G+GLAAPQIG +R+ V+
Sbjct: 13 LRKKSVEVDLDFVRDESSQKLFDDMIKTMYEDDGIGLAAPQIGKNIRVCVI--------- 63
Query: 146 QSKEEIKA--FDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTG 203
KE +K + P + L+++NP +K + +T + EGCLSV V+RY ++ V
Sbjct: 64 -GKEALKMDKHNTLPIEDLVLINPTWQKITKKTHVELEGCLSVPKTYGKVKRYKNVYVEA 122
Query: 204 LDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
L+R G+ I+ +A + A+ +QHE DHL+G L++DK
Sbjct: 123 LNRKGERIEFEANNFFAKAVQHEVDHLEGVLFIDK 157
>gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603]
gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603]
Length = 215
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 90/167 (53%), Gaps = 14/167 (8%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV GDPVL + A EV E +Q ++ DM MR + GVGLAAPQIGV RI V +
Sbjct: 5 IVIDGDPVLRQRAAEVT--EFDDALVQ-LVADMYDTMRVSNGVGLAAPQIGVGQRIFVFD 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSD-----RTALFFEGCLSVNGYRAV 192
E E+ + P +++ P+ K + ++ EGCLS G
Sbjct: 62 APDE------DEQRRGVVVNPSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFE 115
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+R+ + VTG D G+P+ +D GW AR+LQHE DHLDG LYVD++
Sbjct: 116 AKRHYAVRVTGWDEHGEPVVIDGEGWFARVLQHEYDHLDGLLYVDRL 162
>gi|332529198|ref|ZP_08405162.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
gi|332041421|gb|EGI77783.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
Length = 179
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L A+ V ++ + ++ D++ M +A G GLAAPQIGV LR+++
Sbjct: 5 DILKMGDPRLLRVAQPVQ--AFDTDELHLLVSDLLDTMHAANGAGLAAPQIGVDLRVVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ Y + ++ NP + SD +EGCLSV G R VV R+
Sbjct: 63 GSGQTNPRYPDAPVVPR--------TVLCNPVITPLSDEEQHDWEGCLSVPGLRGVVPRW 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D+ G PI G+ AR++QHECDHLDG LY
Sbjct: 115 QRIRYQGFDQYGDPIDRTVEGFHARVVQHECDHLDGKLY 153
>gi|433771874|ref|YP_007302341.1| peptide deformylase [Mesorhizobium australicum WSM2073]
gi|433663889|gb|AGB42965.1| peptide deformylase [Mesorhizobium australicum WSM2073]
Length = 176
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 95/170 (55%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E ++ + DDM+ M APG+GLAA Q+G PLR++V++ KE
Sbjct: 11 DPILRQVSK---PVERVDAPVRKLADDMLATMYDAPGIGLAAIQVGEPLRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D P + I NP++ + +D +++ EGCLS+ Y A VER + V
Sbjct: 67 ------------DETPAPHVFI-NPEILESADARSVYEEGCLSIPDYYAEVERPASVRVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
LDRDG+ +++A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YLDRDGKLQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFK 163
>gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 185
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV DP+L E A+ VD + G I+ ++DDM + M +A GVGLAAPQI V R+IV+
Sbjct: 4 EIVIWPDPILKEVAQPVDRVDDG---IRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
DT Q+ LL ++NP++ + + EGCLS+ G V+R+
Sbjct: 61 -DTSPRQEGQT-------------LLHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRF 105
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V LDR G+P +++A G A LQHE DHL+GT++VD +
Sbjct: 106 ARVWVRALDRQGKPFELEADGLLAVALQHETDHLNGTMFVDHL 148
>gi|404400582|ref|ZP_10992166.1| peptide deformylase [Pseudomonas fuscovaginae UPB0736]
Length = 168
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 25/165 (15%)
Query: 78 IVQAGDP---VLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
I++ DP L +P EVD ++++ +IDDM + M APG+GLAA Q+ V RI+
Sbjct: 6 ILEFPDPRLRTLAKPVAEVD------DKVRQLIDDMFETMYEAPGIGLAATQVNVHQRIV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ + + + E + F +NP+ + ++ + EGCLSV G+ V+
Sbjct: 60 VMDLS------EDRSEPRVF----------INPEFEALTEEKDQYQEGCLSVPGFYENVD 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R + + LDRDG+P +++A G A +QHECDHL+G L+VD +
Sbjct: 104 RPTRVRIKALDRDGKPFELEADGLLAVCIQHECDHLNGKLFVDYL 148
>gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
Length = 174
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + GD VL + A+EV+ EI E + +DDMV+ M G+GLAAPQ+GV R+ V
Sbjct: 4 EIRKYGDDVLKQIAKEVELSEINDE-FRKFLDDMVETMYETDGIGLAAPQVGVSKRVFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED I I+NP ++ ++ T F EGCLSV G VER
Sbjct: 63 EDGNRKIR------------------KIINPVIEPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+++ L+ +G+ ++ A A ++QHE DHL+G L+V+K+ P R++
Sbjct: 105 KKVKLNYLNENGETVEEIAEDLLAVVVQHENDHLNGILFVEKISPIAKRLI 155
>gi|291450059|ref|ZP_06589449.1| polypeptide deformylase [Streptomyces albus J1074]
gi|421743973|ref|ZP_16181989.1| peptide deformylase [Streptomyces sp. SM8]
gi|291353008|gb|EFE79910.1| polypeptide deformylase [Streptomyces albus J1074]
gi|406687619|gb|EKC91624.1| peptide deformylase [Streptomyces sp. SM8]
Length = 215
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 99/192 (51%), Gaps = 24/192 (12%)
Query: 53 RTTSAISKAGWLLGLGQNKKAKLPE-------IVQAGDPVLHEPAREVDPGEIGSERIQN 105
R T A+++ L L ++ +P + GDPVL P EV + G ++
Sbjct: 16 RGTCALTRHAVLRTLIAMRQRSIPGSTGRVRPLALLGDPVLAAPCAEVT--DFGPA-LER 72
Query: 106 IIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMIL 165
+++D+ M +A GVGLAA QIGVPLR+ V + + DRR L ++
Sbjct: 73 LVEDLFATMYAARGVGLAANQIGVPLRVFVHDCPDDE------------DRR--HLGHLV 118
Query: 166 NPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQH 225
NP+L + EGCLS+ G A ERY V G+D G+P V TG+ AR LQH
Sbjct: 119 NPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPRTVHGTGFFARCLQH 178
Query: 226 ECDHLDGTLYVD 237
E DHLDGTLYVD
Sbjct: 179 ESDHLDGTLYVD 190
>gi|427410654|ref|ZP_18900856.1| peptide deformylase [Sphingobium yanoikuyae ATCC 51230]
gi|425710984|gb|EKU74001.1| peptide deformylase [Sphingobium yanoikuyae ATCC 51230]
Length = 176
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++A DP L + P E + +Q +IDDM + M APG+GLAA Q+GVP RI+V+
Sbjct: 6 ILEAPDPRLRTIST---PVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRILVM- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D +E +S EE ++P ++ +NP++ K+SD +++ EGCLSV A VER
Sbjct: 62 DLQEP---ESDEEGAPPVKKP---MVFINPEILKESDEQSVYNEGCLSVPDQFAEVERPA 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I + +DRDG+ + G A LQHE DHL+G L++D +
Sbjct: 116 VIRASWMDRDGRIHEEQLEGLLATCLQHEMDHLEGVLFIDHL 157
>gi|304392301|ref|ZP_07374242.1| peptide deformylase [Ahrensia sp. R2A130]
gi|303295405|gb|EFL89764.1| peptide deformylase [Ahrensia sp. R2A130]
Length = 193
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 22/178 (12%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP IV DP+L ++EV E + ++ +DDM M APG+GLAA Q+G P R
Sbjct: 2 ALLP-IVHLPDPILRVRSQEV---ERVDDELRKFLDDMADTMYDAPGIGLAAVQVGEPRR 57
Query: 133 IIVLEDTKEY-----------ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFE 181
I V++ ++ I ++ EE + D + ++NPK+ SD +++ E
Sbjct: 58 IFVVDCSERAEAEEEAEDDAPIRAEAVEEKR-------DPIFLINPKIVTFSDEPSMYEE 110
Query: 182 GCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
GCLS+ Y A VER + LDRDG+ ++A G + +QHE DHLDGTL++D +
Sbjct: 111 GCLSIPDYYAEVERPATCRIEFLDRDGKEQSLEADGLLSTCIQHEMDHLDGTLFIDHI 168
>gi|385652701|ref|ZP_10047254.1| N-formylmethionyl-tRNA deformylase [Leucobacter chromiiresistens JG
31]
Length = 187
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP IV +G+PVLH PA V E +E ++ ++DDM + +APGVGLAAPQ+G+ R
Sbjct: 2 AVLP-IVISGEPVLHRPAAPVT--EFDAE-LRTLVDDMFETTVAAPGVGLAAPQVGIGKR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL----FFEGCLSVNG 188
+ V Y +EE + +NP+L + EGCLS G
Sbjct: 58 VFVW-------MYDEQEEAAPRG-------VAINPELWISPPEPGIPGEDEVEGCLSFPG 103
Query: 189 YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVE 248
R + R + D DG+P ++ A+GW ARILQHE DHL G LYVD++V R +
Sbjct: 104 ERFALRRSPRALLRAQDIDGKPFEITASGWFARILQHEYDHLSGLLYVDRLVHPEHRGAQ 163
Query: 249 NLDLPLAEGCPKL 261
G P L
Sbjct: 164 KAQRKNGWGRPGL 176
>gi|398841050|ref|ZP_10598277.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398109315|gb|EJL99253.1| peptide deformylase [Pseudomonas sp. GM102]
Length = 179
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V S + +IDDM + M S GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + S EGCLSV G R V+RY
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLSPTLEEGVEGCLSVPGLRGAVDRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D G+PI A+G+ AR++QHECDHL G LY ++
Sbjct: 115 QQIRYEGFDPKGEPIVRIASGFHARVVQHECDHLIGRLYPSRI 157
>gi|397685166|ref|YP_006522485.1| peptide deformylase [Pseudomonas stutzeri DSM 10701]
gi|395806722|gb|AFN76127.1| peptide deformylase [Pseudomonas stutzeri DSM 10701]
Length = 168
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P ++ + I+ +IDDM + M APG+GLAA Q+ V R++V++ +++ K E + F
Sbjct: 20 PVDVVDDGIRQLIDDMFETMYDAPGIGLAATQVNVHRRVVVMDLSED------KSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R + V LDRDGQP ++
Sbjct: 74 ----------INPEFEFLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGQPFELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I]
gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822]
gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50]
gi|384203059|ref|YP_005588798.1| peptide deformylase [Bordetella pertussis CS]
gi|408417247|ref|YP_006627954.1| polypeptide deformylase [Bordetella pertussis 18323]
gi|410418044|ref|YP_006898493.1| polypeptide deformylase [Bordetella bronchiseptica MO149]
gi|410471042|ref|YP_006894323.1| peptide deformylase [Bordetella parapertussis Bpp5]
gi|412340462|ref|YP_006969217.1| polypeptide deformylase [Bordetella bronchiseptica 253]
gi|427812497|ref|ZP_18979561.1| polypeptide deformylase [Bordetella bronchiseptica 1289]
gi|427817533|ref|ZP_18984596.1| polypeptide deformylase [Bordetella bronchiseptica D445]
gi|427823276|ref|ZP_18990338.1| polypeptide deformylase [Bordetella bronchiseptica Bbr77]
gi|39931022|sp|Q7VS88.1|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|39931030|sp|Q7W1V3.1|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|39931046|sp|Q7WQS9.1|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis]
gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I]
gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50]
gi|332381173|gb|AEE66020.1| peptide deformylase [Bordetella pertussis CS]
gi|401779417|emb|CCJ64939.1| polypeptide deformylase [Bordetella pertussis 18323]
gi|408441152|emb|CCJ47575.1| peptide deformylase [Bordetella parapertussis Bpp5]
gi|408445339|emb|CCJ56988.1| polypeptide deformylase [Bordetella bronchiseptica MO149]
gi|408770296|emb|CCJ55087.1| polypeptide deformylase [Bordetella bronchiseptica 253]
gi|410563497|emb|CCN21031.1| polypeptide deformylase [Bordetella bronchiseptica 1289]
gi|410568533|emb|CCN16576.1| polypeptide deformylase [Bordetella bronchiseptica D445]
gi|410588541|emb|CCN03600.1| polypeptide deformylase [Bordetella bronchiseptica Bbr77]
Length = 170
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 19/165 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I++ DP LH+ A+ P + +RI+ ++ DM M APGVGLAA Q+ V R++
Sbjct: 3 LLSILRYPDPRLHKTAK---PVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ ++E DL +++NP++ KSD + EGCLSV G VE
Sbjct: 60 VIDVSEE----------------GNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVE 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I LD+ GQP + +A G A +QHE DHLDG ++V+ +
Sbjct: 104 RAARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYL 148
>gi|406998381|gb|EKE16315.1| hypothetical protein ACD_11C00020G0020 [uncultured bacterium]
Length = 152
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 25/165 (15%)
Query: 77 EIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
EI++ G+P+L + ++ DP E +++Q++ID M+ MRSA G+GLAAPQIG +R+ V
Sbjct: 4 EILKNGNPILRKKTGKIKDPLE---KKVQSLIDFMLATMRSANGMGLAAPQIGESIRLCV 60
Query: 136 LEDT-KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+E+ K Y+ ++NPK+ S + L EGCLS G +
Sbjct: 61 IEENGKTYV--------------------LMNPKVTAYSKKKVLMEEGCLSFPGEFFQIS 100
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R ++++ +D++G+ K+ A G AR LQHE DHLDG L D++
Sbjct: 101 RPEEVKIRYIDKEGKNAKLKADGLLARALQHEIDHLDGILITDRV 145
>gi|357416225|ref|YP_004929245.1| peptide deformylase [Pseudoxanthomonas spadix BD-a59]
gi|355333803|gb|AER55204.1| peptide deformylase [Pseudoxanthomonas spadix BD-a59]
Length = 176
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ G+PVL + A V+ + +++++DDM + M A GVGLAAPQ+ V R+IV
Sbjct: 4 DIIRMGEPVLLQRAEPVE--HFATGELRDLVDDMFQTMELANGVGLAAPQVAVGKRVIV- 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + D + NP ++ SD +EGCLS+ G RAV+ R+
Sbjct: 61 --------FGFDHNTRYPDAPAVPRTALFNPVVEPLSDALEDGWEGCLSIPGLRAVIPRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
I +G + GQ ++ A G+ AR++QHE DHLDG LY ++ + F D+ AE
Sbjct: 113 RRIRYSGWNAQGQRVERVAEGFHARVVQHEVDHLDGILYPSRI--RDFSTFGFTDVLFAE 170
Query: 257 G 257
G
Sbjct: 171 G 171
>gi|298246394|ref|ZP_06970200.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
gi|297553875|gb|EFH87740.1| peptide deformylase [Ktedonobacter racemifer DSM 44963]
Length = 169
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 96/166 (57%), Gaps = 24/166 (14%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
+ +I+ + +P+L + A++V + +Q ++DDM + M ++ GVGLAAPQI + +R+
Sbjct: 3 MRQIITSENPILRQKAKKVHRFDAS---LQKLVDDMFETMHASNGVGLAAPQIALSIRVF 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV-V 193
V E Y+ + + I NP++ K ++ EGCLS+ GY +
Sbjct: 60 VAE-------YEGRR------------VAIFNPEIVK-AEGEERGQEGCLSIPGYLGNNI 99
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I V G+D G+P++V+A GW ARILQHE DHLDG L++D++
Sbjct: 100 RRAAKIVVKGVDVKGKPVRVNAEGWFARILQHEIDHLDGILFLDRL 145
>gi|307729328|ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003]
gi|307583863|gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003]
Length = 177
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A VD + + +I DM + M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIADPVD--HFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E D P +++NP + S +EGCLSV G R V R+
Sbjct: 62 -------GFGSNERYP--DAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I+ G D+ G+PI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|398868370|ref|ZP_10623769.1| peptide deformylase [Pseudomonas sp. GM78]
gi|398233340|gb|EJN19274.1| peptide deformylase [Pseudomonas sp. GM78]
Length = 168
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ V + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAKTV---TVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LS------EDRTEPRVF----------INPEFEPLTDEMEQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++V LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKVKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|407713939|ref|YP_006834504.1| peptide deformylase [Burkholderia phenoliruptrix BR3459a]
gi|407236123|gb|AFT86322.1| peptide deformylase [Burkholderia phenoliruptrix BR3459a]
Length = 177
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A VD + + +I DM + M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIADPVD--HFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E D P +++NP + S +EGCLSV G R V R+
Sbjct: 62 -------GFGSNERYP--DAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I+ G D+ G+PI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|398997464|ref|ZP_10700289.1| peptide deformylase [Pseudomonas sp. GM21]
gi|398124106|gb|EJM13629.1| peptide deformylase [Pseudomonas sp. GM21]
Length = 168
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ +++ + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED------RSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R ++V LDRDGQP ++
Sbjct: 74 ----------INPEFETLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|421615478|ref|ZP_16056502.1| peptide deformylase [Pseudomonas stutzeri KOS6]
gi|409782551|gb|EKN62106.1| peptide deformylase [Pseudomonas stutzeri KOS6]
Length = 168
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + I+ +IDDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDDIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFESLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGKPYELVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|390990475|ref|ZP_10260760.1| peptide deformylase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|418515524|ref|ZP_13081704.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|418522002|ref|ZP_13088041.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|372554798|emb|CCF67735.1| peptide deformylase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|410701626|gb|EKQ60144.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410707822|gb|EKQ66272.1| peptide deformylase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 170
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S+ Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ + E K + F +NP++ K L+ EGCLSV G A
Sbjct: 61 FMVIDISDE------KNLPQVF----------VNPEIVSKQGEQ-LYQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQP ++ A G A +QHE DHLDG L+VD + P
Sbjct: 104 VSRADAITVRYLDRQGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSP 152
>gi|303232127|ref|ZP_07318830.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
gi|429759367|ref|ZP_19291866.1| peptide deformylase [Veillonella atypica KON]
gi|302513233|gb|EFL55272.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
gi|429179643|gb|EKY20882.1| peptide deformylase [Veillonella atypica KON]
Length = 162
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 21/162 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+V+AG P+L E A +P E +++++ +I+DM M GVGLAAPQ+ V RIIV+
Sbjct: 5 EVVKAGHPILKEVA---EPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D L+ ++NP++ + + + EGCLSV GY VER+
Sbjct: 62 DD-----------------HAGSGLIALINPEIIH-GEGSQIGLEGCLSVPGYFGDVERF 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ V G+D + + + A G+ ARI QHE DHL+G L+++K
Sbjct: 104 EKVTVKGIDPHNKKVMIKAEGFLARIFQHEIDHLEGHLFIEK 145
>gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|388466634|ref|ZP_10140844.1| peptide deformylase [Pseudomonas synxantha BG33R]
gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|388010214|gb|EIK71401.1| peptide deformylase [Pseudomonas synxantha BG33R]
Length = 168
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + ++++ ++DDM + M APG+GLAA Q+ V LR++V++ + + + E + +
Sbjct: 20 PVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLS------EDRSEPRVY 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV + VER L +++ LDRDG+P ++
Sbjct: 74 ----------INPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPFELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|269797908|ref|YP_003311808.1| peptide deformylase [Veillonella parvula DSM 2008]
gi|269094537|gb|ACZ24528.1| peptide deformylase [Veillonella parvula DSM 2008]
Length = 162
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 21/162 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++V+AG PVL + A +P E +++++ +IDDM + M GVGLAAPQ+ V RIIV+
Sbjct: 5 DVVKAGHPVLKQVA---EPVEHVNKKLRVLIDDMAETMYKTEGVGLAAPQVAVAKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D + L+ ++NP++ ++ + + EGCLSV GY VER+
Sbjct: 62 DD-----------------QSGSGLIALINPEITH-AEGSQVGPEGCLSVPGYFGDVERF 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ V G+D + + + A G+ ARI QHE DHL+G L+++K
Sbjct: 104 NKVTVKGIDPHNKKVTIKAEGFLARIFQHEIDHLEGHLFIEK 145
>gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827]
gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827]
Length = 195
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 96/186 (51%), Gaps = 22/186 (11%)
Query: 81 AGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK 140
AGDPVLH P R VD + + ++ +I DM + M +A GVGLAA QIGV LR+ V +
Sbjct: 9 AGDPVLHNPTRPVDEHD---DELRALIADMYETMAAANGVGLAANQIGVDLRLFVYDCPD 65
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVER 195
+ + E ++NP L+ + +EGCLS G R
Sbjct: 66 DEGVRRRGE--------------VVNPVLQTSDVPLGMPDPDDDYEGCLSAPGESYPTGR 111
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLA 255
+VTG D +G P++V+ TG+ AR LQHE DHLDG LY+D++V + R + +
Sbjct: 112 ASWAKVTGTDGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVGRHKRASKKMIKANG 171
Query: 256 EGCPKL 261
G P L
Sbjct: 172 WGVPGL 177
>gi|170692137|ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M]
gi|170142567|gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M]
Length = 177
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A VD + + +I DM + M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIADPVD--HFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E D P +++NP + S +EGCLSV G R V R+
Sbjct: 62 -------GFGSNERYP--DAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I+ G D+ G+PI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|421485395|ref|ZP_15932954.1| peptide deformylase [Achromobacter piechaudii HLE]
gi|400196314|gb|EJO29291.1| peptide deformylase [Achromobacter piechaudii HLE]
Length = 177
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + + +IDDM + M +A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAPPVE--RFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E D P ++ NP + SD +EGCLSV G R V RY
Sbjct: 62 ------GFDRNERYP--DAPPVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGQVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I +G D GQ I+ +A G+ AR++QHECDHL G LY ++
Sbjct: 114 HIRYSGRDPYGQLIEREAEGFHARVVQHECDHLIGRLYPSRI 155
>gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84]
gi|398379645|ref|ZP_10537765.1| peptide deformylase [Rhizobium sp. AP16]
gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84]
gi|397722277|gb|EJK82821.1| peptide deformylase [Rhizobium sp. AP16]
Length = 171
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E I + DDM++ M APG+GLAA QIGV R++V++ +E
Sbjct: 11 DPLLRQASK---PIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLVIDVARE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D++P L+ +NP++ SD +++ EGCLS+ Y A VER + V
Sbjct: 67 ----------GEDKQP---LVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
+DRDG+ ++A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 HIDRDGKEQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKF 162
>gi|220931832|ref|YP_002508740.1| peptide deformylase [Halothermothrix orenii H 168]
gi|254767591|sp|B8CWS6.1|DEF_HALOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|219993142|gb|ACL69745.1| peptide deformylase [Halothermothrix orenii H 168]
Length = 154
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 21/164 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I + GDPVL A+ V EI +++ ++ID+MV+ M A GVGLAAPQ+GV RIIV+
Sbjct: 5 QIRKIGDPVLRSKAKPVT--EI-TKKTLSLIDNMVETMYQAEGVGLAAPQVGVSKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
DT E L+ ++NP++ + + + EGCLSV G V R
Sbjct: 62 -DTGE----------------GQGLIELINPEIIETEGKD-IMEEGCLSVPGQTGKVIRA 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+ V GL+R G+ +++ A G+ AR QHE DHL+G L++DK+V
Sbjct: 104 SKVTVKGLNRGGKEVRIRAEGFLARAFQHEIDHLNGILFIDKVV 147
>gi|408374191|ref|ZP_11171880.1| peptide deformylase [Alcanivorax hongdengensis A-11-3]
gi|407765852|gb|EKF74300.1| peptide deformylase [Alcanivorax hongdengensis A-11-3]
Length = 168
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 20/165 (12%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKL EI++ DP L A+ P E + ++ +IDDM + M APG+GLAA Q+ V +R
Sbjct: 2 AKL-EILEFPDPRLRTVAK---PVEKVDDELRKLIDDMFETMYDAPGIGLAASQVNVHIR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+IV++ + + K E + F +NP++ +D TA + EGCLSV G+
Sbjct: 58 LIVMDLS------EDKSEPRVF----------INPEITPLTDDTAPYEEGCLSVPGFYEK 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
VER + + LDRDG + +A A +QHE DHLDG L+VD
Sbjct: 102 VERPARVRIKALDRDGNTFEEEADELLATCIQHEIDHLDGKLFVD 146
>gi|256394328|ref|YP_003115892.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
gi|256360554|gb|ACU74051.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
Length = 213
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 91/169 (53%), Gaps = 28/169 (16%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I GDPVLH P P E +R+ ++ DM M +A GVGLAA QIGVPLR+ V +
Sbjct: 12 ITIVGDPVLHRPCA---PVEEFDDRLAGLVADMFASMYAAEGVGLAANQIGVPLRVFVYD 68
Query: 138 ----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKS-DRTAL--FFEGCLSVNGYR 190
D E++ + ++NP L ++ DR L EGCLSV G
Sbjct: 69 CQDDDGVEHVGH------------------VVNPVLAEQPPDRRQLDDSAEGCLSVPGPH 110
Query: 191 AVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ R VTG+D G+PI V+ TG+ AR LQHE DHL+G LY+D++
Sbjct: 111 HELARPDYARVTGVDLHGEPITVEGTGYFARCLQHEFDHLEGRLYIDRL 159
>gi|452750253|ref|ZP_21950005.1| peptide deformylase [Pseudomonas stutzeri NF13]
gi|452005903|gb|EMD98183.1| peptide deformylase [Pseudomonas stutzeri NF13]
Length = 168
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + G I+ +IDDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVDVVDDG---IRQLIDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFESLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGKPYELVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
gi|81692121|sp|Q67PR5.1|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
Length = 217
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 80/140 (57%), Gaps = 25/140 (17%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFD-- 160
I+ ++DDM + M +APGVGLAAPQ+GV R+IV++ P D
Sbjct: 28 IRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIVVD--------------------PQDGS 67
Query: 161 --LLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGW 218
L ++NP++ K ++ EGCLS+ G V RY ++V LDR G+ + +DA G+
Sbjct: 68 GQLYQLINPEIVK-AEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGKKVWIDAEGY 126
Query: 219 QARILQHECDHLDGTLYVDK 238
ARI QHE DHLDG LY DK
Sbjct: 127 LARIFQHEIDHLDGILYTDK 146
>gi|406900092|gb|EKD43172.1| Peptide deformylase [uncultured bacterium]
Length = 166
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 13/164 (7%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L E+ +P+LH+ R++ E+ + I+ +I DM + M GVG+AAPQ+G L++
Sbjct: 2 LLEVTLEPNPILHKKGRDLTVAELSTPTIKKLILDMTETMYVKDGVGIAAPQVGESLQLC 61
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V+ K++ E+ L+++NP KK S A EGCLSV V+
Sbjct: 62 VI--AKKFSPLNKNED-----------LILVNPVWKKTSILKAWDIEGCLSVPLVYGEVK 108
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
RY +I V L++ G+ I+ A + ARI+QHE DHL+GTL+++K
Sbjct: 109 RYTNIVVQALNQFGEKIEFKAKDFPARIVQHEVDHLNGTLFIEK 152
>gi|398944790|ref|ZP_10671459.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
gi|398157773|gb|EJM46146.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
Length = 168
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ +++ + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED------RSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R ++V LDRDGQP ++
Sbjct: 74 ----------INPEFETLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|54309245|ref|YP_130265.1| polypeptide deformylase [Photobacterium profundum SS9]
gi|46913677|emb|CAG20463.1| hypothetical polypeptide deformylase [Photobacterium profundum SS9]
Length = 175
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 19/166 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI+Q G+P+L PA + +I E ++ + ++M S GVG+AAPQ+G PLR ++
Sbjct: 6 EIIQLGNPLLRVPAEALSAVQI--ETALPLLKSLEQIMLSHQGVGIAAPQVGQPLRAFIV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLM----ILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ DR P LM ++NP+L +S+ +EGCLS+ G RA
Sbjct: 64 AS-------------RPNDRYPHAPLMEPTIMINPELLWQSEEMEKDWEGCLSIPGIRAK 110
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
V RY I V L+ G I+ + TG+ ARI QHE DHL+G +++D+
Sbjct: 111 VNRYTHIRVRYLNASGDVIETEFTGFIARIFQHELDHLNGIVFLDR 156
>gi|320104581|ref|YP_004180172.1| peptide deformylase [Isosphaera pallida ATCC 43644]
gi|319751863|gb|ADV63623.1| peptide deformylase [Isosphaera pallida ATCC 43644]
Length = 230
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 13/180 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+ G P L + AR V+P ++ ++ + +I DM + + GVGLA PQIGV R+I+
Sbjct: 22 ILWLGHPALRQTARVVEPSQLKTDAFRRLIGDMAQTLEDEGGVGLAGPQIGVDQRVILAG 81
Query: 138 D-TKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + ++AF +NP + +S + +EGCLS+ G A V R
Sbjct: 82 AFPSERDPSRPNHPVRAF----------INPVIVARSSQVGAAYEGCLSIPGILARVVRP 131
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+E+ LD + P ++ A G+ AR+LQHE DHLDG L VD ++F + +LD L++
Sbjct: 132 HAVEIEYLDLNAMPRRLRAEGFLARVLQHEIDHLDGVLIVDHA--RSFGEIVSLDWVLSQ 189
>gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup]
gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup]
Length = 178
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 15/160 (9%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V DP+L E ++ VD + +Q + DDM++ M +A G+GLAA QIG+PLR++V++
Sbjct: 6 LVTLPDPILREVSKPVDQVDSA---LQKLADDMLETMYNAKGIGLAAIQIGIPLRMLVID 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+S S++E K +PF +I+NP++ SD ++ EGCLS+ Y A VER
Sbjct: 63 -----VSGNSEDERK----KPF---VIINPEILWLSDERNIYKEGCLSIPDYFAEVERPK 110
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V +R+G+ +++A A LQHE DHLDG L++D
Sbjct: 111 RLCVRYQNREGKQTEIEADDLLATCLQHEIDHLDGRLFID 150
>gi|428216240|ref|YP_007089384.1| peptide deformylase [Oscillatoria acuminata PCC 6304]
gi|428004621|gb|AFY85464.1| peptide deformylase [Oscillatoria acuminata PCC 6304]
Length = 177
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIVQ G+PVL E A+ V + S IQ +I++++ + + GVG+AAPQIG R+ +L
Sbjct: 6 EIVQLGNPVLREKAQPVTNVHLDS--IQLLIEELMAALNPSNGVGIAAPQIGESYRVFIL 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ + Y ++A + I++P++ S+ T +EGCLSV G R V R+
Sbjct: 64 A-SRPTLRYPQAPTMEA--------IAIIDPQIIAYSEETVKDWEGCLSVPGIRGFVPRH 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
IEV LD+ G+ + TG+ ARI QHE DHL+G +++D++
Sbjct: 115 QAIEVKYLDQQGKLHHQEFTGFVARIFQHEYDHLEGKVFLDRV 157
>gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 170
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S+ Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ + E Q + +NP++ K L+ EGCLSV G A
Sbjct: 61 FMVIDISDERNLPQ----------------VFVNPEIVSKQGEQ-LYQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQP ++ A G A +QHE DHLDG L+VD + P
Sbjct: 104 VSRADAITVRYLDRQGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSP 152
>gi|253996543|ref|YP_003048607.1| peptide deformylase [Methylotenera mobilis JLW8]
gi|253983222|gb|ACT48080.1| peptide deformylase [Methylotenera mobilis JLW8]
Length = 181
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 7/158 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ G+P L A V + + + +I D+ M+ G G+AAPQIGV LR+++
Sbjct: 6 VLRMGEPCLLAKAEPV--AQFNTAELHQLIQDLEDTMQHMNGAGIAAPQIGVSLRVVIF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
KE + + D P+ +L +NPKL D+ +EGCLSV G R +V R+L
Sbjct: 63 GQKEPAAVNPR--YPDADAVPYTVL--INPKLTLIGDKIENDWEGCLSVPGMRGIVPRHL 118
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ TG D+ G + +G+ AR++QHECDHLDG LY
Sbjct: 119 KLHYTGFDQYGNKVDRLVSGFHARVVQHECDHLDGVLY 156
>gi|433602299|ref|YP_007034668.1| Peptide deformylase [Saccharothrix espanaensis DSM 44229]
gi|407880152|emb|CCH27795.1| Peptide deformylase [Saccharothrix espanaensis DSM 44229]
Length = 243
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 22/189 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AG+PVLH P + V E+ + ++ +++DM + M +A GVGLAA QIG+ R+ V
Sbjct: 56 IVIAGEPVLHHPTKPV---EVFDDALRTLVEDMFETMAAAHGVGLAANQIGIDQRVFV-- 110
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
Y ++ R +++NP L+ + +EGCLS G
Sbjct: 111 -------YDCPDDQGNRFRG-----VVVNPVLETSEIPLGMPDPDDDYEGCLSAPGESYP 158
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDL 252
R +VTG D DG+P++V+ TG+ AR LQHE DHLDG LY+D+++ + R + +
Sbjct: 159 TGRAPWAKVTGFDADGKPVEVEGTGFFARCLQHETDHLDGYLYLDRLIGRHKRAAKKMLK 218
Query: 253 PLAEGCPKL 261
G P L
Sbjct: 219 ANGWGVPGL 227
>gi|238019378|ref|ZP_04599804.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748]
gi|237864077|gb|EEP65367.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748]
Length = 162
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 21/162 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
++V+AG PVL + A +P E +++++ +IDDM + M GVGLAAPQ+ V RIIV+
Sbjct: 5 DVVKAGHPVLKQIA---EPVEHVNKKLRALIDDMAETMYETEGVGLAAPQVAVSKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D L+ ++NP++ ++ + + EGCLSV GY VER+
Sbjct: 62 DD-----------------HAGSGLIALINPEITH-AEGSQVGPEGCLSVPGYFGDVERF 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I V G+D + + + A G+ ARI QHE DHL+G L+++K
Sbjct: 104 DKITVKGIDPHNKKVTIKAEGFLARIFQHEIDHLEGHLFIEK 145
>gi|302878431|ref|YP_003846995.1| peptide deformylase [Gallionella capsiferriformans ES-2]
gi|302581220|gb|ADL55231.1| peptide deformylase [Gallionella capsiferriformans ES-2]
Length = 175
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GD L E A+ V +Q++++DM M + G GLAAPQIGV LR+++
Sbjct: 6 VLRMGDARLLEVAKPV----TDFSALQDVLNDMQDTMHALNGAGLAAPQIGVGLRVVIF- 60
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+E Y E + P+ +L +NP + D +EGCLSV G R V RY
Sbjct: 61 GVEENSRYPDAESV------PYTVL--INPVVTPIDDLMEDDWEGCLSVPGLRGRVARYH 112
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI +G+ AR++QHECDHLDG LY +M
Sbjct: 113 AIRYQGVDAKGAPIDRSVSGFHARVVQHECDHLDGVLYPMRM 154
>gi|418938199|ref|ZP_13491761.1| Peptide deformylase [Rhizobium sp. PDO1-076]
gi|375055200|gb|EHS51473.1| Peptide deformylase [Rhizobium sp. PDO1-076]
Length = 170
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 24/169 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E I+ + +DM++ M APG+GLAA Q+GV R++V++ +KE
Sbjct: 11 DPLLRQVSQ---PIERVDADIRRLAEDMLETMYEAPGIGLAAIQVGVARRMLVIDISKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+R P L+ +NP++ + SD +++ EGCLS+ Y A VER I V
Sbjct: 67 ----------GDEREP---LVFINPEIVRSSDERSVYEEGCLSIPDYYAEVERPAAITVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTF 244
LDR+G+ +A G A LQHE DHL+G L++D +MV K F
Sbjct: 114 SLDREGRETLTEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKF 162
>gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
Length = 172
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 100/165 (60%), Gaps = 18/165 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ +P+L ++EV EI R+ +IDDMV+ M +APG+GLAAPQ+GV RI+V+
Sbjct: 4 KIVKYPNPILRRKSKEVK--EIDG-RVIKLIDDMVETMYAAPGLGLAAPQVGVNERILVI 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + + + K + L+ I+NP + + +D + EGCLS+ G A V R
Sbjct: 61 DPS----AGEDKSK----------LIKIINPVIVE-ADGEVIEEEGCLSIPGEYANVRRA 105
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
+ V GLD DG+ ++++A AR QHE DHL+G L++D++ P
Sbjct: 106 AKVLVKGLDVDGKEVEIEAEDLLARAFQHEIDHLNGVLFIDRLSP 150
>gi|187477209|ref|YP_785233.1| peptide deformylase [Bordetella avium 197N]
gi|115421795|emb|CAJ48306.1| peptide deformylase [Bordetella avium 197N]
Length = 177
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 25/170 (14%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
I++ GDP L A V+ GS ++ +IDDM M A GVGLAAPQIGV L++++
Sbjct: 4 SILKMGDPRLLRVAAPVE--RFGSAELKQLIDDMFDTMAYAHGVGLAAPQIGVDLQLVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
F+R P ++ NP + SD +EGCLSV G
Sbjct: 62 ----------------GFERNPRYPDAPAVPKTVLCNPVITPLSDEMEDGWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R +V RY I G DG I +A+G+ AR++QHECDHL G LY ++
Sbjct: 106 RGLVPRYQYIRYQGFAPDGTAIDREASGFHARVVQHECDHLIGRLYPSRI 155
>gi|303228554|ref|ZP_07315382.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a]
gi|302516801|gb|EFL58715.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a]
Length = 162
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 21/162 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+V+AG P+L E A +P E +++++ +I+DM M GVGLAAPQ+ V RIIV+
Sbjct: 5 EVVKAGHPILKEVA---EPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D L+ ++NP++ + + + EGCLSV GY VER+
Sbjct: 62 DD-----------------HAGSGLIALINPEIIH-GEGSQIGLEGCLSVPGYFGDVERF 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
+ V G+D + + + A G+ ARI QHE DHL+G L+++K
Sbjct: 104 EKVTVKGIDPHNKKVMIKADGFLARIFQHEIDHLEGHLFIEK 145
>gi|414152957|ref|ZP_11409284.1| Peptide deformylase [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411455339|emb|CCO07186.1| Peptide deformylase [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 151
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 29/165 (17%)
Query: 77 EIVQAGDPVLHE---PAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
+IV+ GDPVL E P +EV P I ++D+M M +A GVGLAAPQIGV R+
Sbjct: 5 QIVEIGDPVLREKAKPVKEVTP------HILKLLDNMADTMYAAKGVGLAAPQIGVSKRV 58
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
IV+ D E L+ ++NP++ + S + A+ EGCLSV G V
Sbjct: 59 IVV-DVGE------------------GLVELINPEIVEASGQ-AVDTEGCLSVPGMIGEV 98
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
R + V GL+R G+ + A G+ AR LQHE DHL+G ++VDK
Sbjct: 99 ARADKLIVKGLNRQGKEVVYQAKGFMARALQHEIDHLEGIIFVDK 143
>gi|431925232|ref|YP_007238266.1| peptide deformylase [Pseudomonas stutzeri RCH2]
gi|431823519|gb|AGA84636.1| peptide deformylase [Pseudomonas stutzeri RCH2]
Length = 168
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + ++ +IDDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDELRQLIDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFESLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGKPYELVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|386814421|ref|ZP_10101639.1| Peptide deformylase [Thiothrix nivea DSM 5205]
gi|386418997|gb|EIJ32832.1| Peptide deformylase [Thiothrix nivea DSM 5205]
Length = 157
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 11/157 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + G+P+L + A V + IQ +ID+M+ M +A GVG+AAPQ+ PLRII++
Sbjct: 9 IAKRGEPILQQRAHTV--SNVHDPAIQQLIDNMLATMLAANGVGIAAPQVFSPLRIIIVA 66
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
S+ + D + L ++NP++ +S T+L+ EGCLSV R +ER
Sbjct: 67 ---------SRPNQRYPDAPLMEPLALVNPEILWRSAETSLYDEGCLSVPDTRVPMERAE 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234
++V L RDGQ ++ G+ ARI+QHE DH++G L
Sbjct: 118 QLQVRYLTRDGQAVETRYHGFIARIIQHEYDHIEGIL 154
>gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193]
gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193]
Length = 172
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 86/142 (60%), Gaps = 13/142 (9%)
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
S++++ + DDM++ M +APG+GLAAPQIGV R+IVL+ KE + + +P
Sbjct: 24 SDKLRLLADDMLETMYAAPGIGLAAPQIGVMERLIVLDCEKE----------EGVEPKP- 72
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
L++ NP++ S+ T ++ EGCLS+ A V R D+EV LDR+G + G
Sbjct: 73 --LVMFNPEIISSSEETNVYEEGCLSIPDQYAEVTRPRDVEVQWLDRNGNQQRETFDGLW 130
Query: 220 ARILQHECDHLDGTLYVDKMVP 241
A +QHE DHLDG L++D + P
Sbjct: 131 ATCVQHEIDHLDGKLFIDYLKP 152
>gi|429333783|ref|ZP_19214474.1| peptide deformylase [Pseudomonas putida CSV86]
gi|428761587|gb|EKX83810.1| peptide deformylase [Pseudomonas putida CSV86]
Length = 168
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 25/165 (15%)
Query: 78 IVQAGDPVLH---EPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
I++ DP L +P EVD I+ ++DDM + M APG+GLAA Q+ V R++
Sbjct: 6 ILEFPDPRLRTIAKPVTEVDDA------IRQLVDDMFETMYDAPGIGLAATQVNVHKRVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ +++ + E + F +NP+L++ + + EGCLSV G+ V+
Sbjct: 60 VMDLSED------RSEPRVF----------INPELEELTQDMGQYQEGCLSVPGFYENVD 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R L + V LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 104 RPLQVRVKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|340622589|ref|YP_004741041.1| polypeptide deformylase [Capnocytophaga canimorsus Cc5]
gi|339902855|gb|AEK23934.1| Polypeptide deformylase [Capnocytophaga canimorsus Cc5]
Length = 196
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 94/166 (56%), Gaps = 13/166 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+ GDPVL + ++ P ++ +ID+M + M ++ GVGLAAPQIG+P+R+ V++
Sbjct: 5 IIAYGDPVLRKVCADITPD---YPNLKTLIDNMFQTMEASHGVGLAAPQIGLPIRLFVID 61
Query: 138 ----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
E +S + + +K F + + +N K+ +++ F EGCLS+ G R V
Sbjct: 62 AEPFSDDEDLSEEERTLLKNFRK------VFINAKIVEETGEKWSFNEGCLSIPGVREDV 115
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R+ + + LD QP ++ G AR++QHE DH+ G L+ DK+
Sbjct: 116 SRHETLTIEFLDEHFQPQRLTVGGLAARVIQHEYDHIQGILFTDKL 161
>gi|399003947|ref|ZP_10706592.1| peptide deformylase [Pseudomonas sp. GM18]
gi|398121237|gb|EJM10874.1| peptide deformylase [Pseudomonas sp. GM18]
Length = 168
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ +++ + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED------RSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R +++ LDRDGQP ++
Sbjct: 74 ----------INPEFETLTDEMGQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ]
gi|259645177|sp|C1DFV8.1|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ]
Length = 168
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E + I+ +IDDM + M +APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAK---PIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KNEPRVF----------INPEFEALTEELEPYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIRALDRDGQPFELVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|427402492|ref|ZP_18893489.1| peptide deformylase 1 [Massilia timonae CCUG 45783]
gi|425718298|gb|EKU81245.1| peptide deformylase 1 [Massilia timonae CCUG 45783]
Length = 179
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 98/167 (58%), Gaps = 18/167 (10%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I++ DP LH+ A+ V E G+ER++ ++ DM + M APGVGLAA Q+ V R++
Sbjct: 3 LLDILRYPDPRLHKVAKPV--TEFGTERLRKLVADMAETMYDAPGVGLAATQVDVHERVV 60
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
++ T +++E+ L++ +NP++ S+ ++ EGCLSV G VE
Sbjct: 61 TIDVT------EAQEK----------LMVFINPEITWASEEKQVYDEGCLSVPGIYDGVE 104
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
R ++V D DG+P +V+A G A +QHE DHL G ++V+ + P
Sbjct: 105 RPARVKVRAFDVDGKPFEVEADGLLAVCIQHEMDHLMGKVFVEYLSP 151
>gi|312796239|ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
gi|312168014|emb|CBW75017.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
454]
Length = 177
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ VD + + +I DM + MR+A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRMAKPVD--RFNTPELHQLIQDMFETMRAANGAGLAAPQIGVDLQVVI- 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + + D +++NP + S +EGCLSV G R +V R
Sbjct: 61 --------FGFGQNARYPDAPAVPETVLINPMITPVSLDMEEGWEGCLSVPGLRGIVSRL 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D+ GQPI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIRYEGHDQYGQPIDRIAEGFHARVVQHECDHLIGRLY 151
>gi|291441025|ref|ZP_06580415.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
gi|291343920|gb|EFE70876.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
Length = 181
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL P REV + G E + +++D+ M +A GVGLAA QIG PLR+ V + +
Sbjct: 20 GDPVLRAPCREVT--DFGPE-LARLVEDLFATMYAARGVGLAANQIGEPLRVFVYDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ L ++NP+L + EGCLS+ G A ER+ V
Sbjct: 77 -------EDVR-------HLGHVVNPRLVETDGVVVRGPEGCLSLPGLEAGTERHDHAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
G G+P+ V TG+ AR LQHECDHL+G LY D++
Sbjct: 123 EGFTVTGEPVTVHGTGFFARCLQHECDHLEGRLYADRLT 161
>gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas protegens Pf-5]
gi|341579779|gb|AAY95440.2| peptide deformylase [Pseudomonas protegens Pf-5]
Length = 168
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFEALTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 RVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella inopinata BO1]
gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella inopinata BO1]
Length = 175
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + + P E ++++ DM M APG+GLAA Q+G P+R++V++ KE
Sbjct: 11 DPVLRQVSA---PVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP + + SD+ + + EGCLS+ Y A VER ++V
Sbjct: 67 -------------GEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
D DG+P +DA G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YFDADGKPQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFK 163
>gi|54294000|ref|YP_126415.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
gi|397666738|ref|YP_006508275.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Legionella
pneumophila subsp. pneumophila]
gi|53753832|emb|CAH15298.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens]
gi|307609830|emb|CBW99347.1| hypothetical protein LPW_11251 [Legionella pneumophila 130b]
gi|395130149|emb|CCD08385.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Legionella
pneumophila subsp. pneumophila]
Length = 172
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
++ DP+L + A + E GS ++ +I M +M VG+AAPQIG+ R+IV
Sbjct: 4 LLDKNDPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+Y + E P ++NP L+ S +EGCL+ V R +
Sbjct: 63 -GTDYTKRRKPE-------YPIPDTALINPSLRILSQEIQTGYEGCLNCGELMGEVPRAM 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+IE +G D DG I A+G +ARILQHE DHLDG L++D++
Sbjct: 115 EIEYSGFDIDGNRITKKASGLEARILQHEIDHLDGFLFLDRV 156
>gi|312197386|ref|YP_004017447.1| peptide deformylase [Frankia sp. EuI1c]
gi|311228722|gb|ADP81577.1| peptide deformylase [Frankia sp. EuI1c]
Length = 205
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 97/179 (54%), Gaps = 24/179 (13%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL PA P + +R++ ++DDM++ M +APGVGLAAPQ+GV LR+ V DT
Sbjct: 10 GDPVLRTPA---GPVTVFDDRLRRLVDDMIETMYAAPGVGLAAPQVGVGLRLFVF-DTDW 65
Query: 142 YISYQSKEE--------IKAFDRRPFDLLMILNPKLK----KKSDRTALFFEGCLSVNGY 189
+ + E +A R P ++ NP L+ +++D+ EGCLS+ G
Sbjct: 66 QPNRPDRHEDDAVPEAAGRARGRAP---RVVANPVLELGPGEQNDQ-----EGCLSIPGL 117
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVE 248
R V G+D G P++ TG AR LQHE DHL GTLYVD++ T R +
Sbjct: 118 HYATARAAAATVRGVDAAGDPVEYAGTGLLARCLQHEADHLAGTLYVDRLTGLTRRSAQ 176
>gi|124023604|ref|YP_001017911.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
gi|123963890|gb|ABM78646.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
9303]
Length = 181
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 10/164 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ G+P L + ++ VD ++ +E I ++I D+ +++ G GLAAPQIG+PLR+++
Sbjct: 5 EILRMGNPQLRQVSKVVD--DVSAELIISLIKDLQDTVKAHQGAGLAAPQIGIPLRVVLF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y I +++NP L +EGCLSV G R V R+
Sbjct: 63 GGGGPNPRYPEAPSIPQ--------TLLINPVLTPIDSDLEDGWEGCLSVPGLRGKVSRW 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I L+ DG I+ G+ AR++QHECDHLDG L+ D++V
Sbjct: 115 SRIHYRALNEDGLEIEHCLEGFPARVIQHECDHLDGVLFTDRLV 158
>gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like proterin [Herminiimonas arsenicoxydans]
gi|133738458|emb|CAL61503.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas
arsenicoxydans]
Length = 178
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V E + + +I DM M +A G GLAAPQIGV LR+++
Sbjct: 5 EILKMGDPRLLRVAEPVK--EFNTPELNALIADMFDTMHAAHGAGLAAPQIGVNLRLVI- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y K+ + D P +++NPKL+ S +EGCLSV G R VV R+
Sbjct: 62 --------YGFKQNTRYPDAPPVPETVLINPKLRPLSSEREEGWEGCLSVPGLRGVVPRF 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D+ G+ I DA G+ AR++QHECDHLDG LY
Sbjct: 114 SSLHYEGFDQFGKAISRDADGFHARVVQHECDHLDGILY 152
>gi|91788452|ref|YP_549404.1| peptide deformylase [Polaromonas sp. JS666]
gi|91697677|gb|ABE44506.1| Peptide deformylase [Polaromonas sp. JS666]
Length = 179
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ V ++ + ++ DM MR+A G GLAAPQIGV L++++
Sbjct: 5 EILKMGDPRLFRVAQPV--AAFDTDALHLLVSDMFDTMRAADGAGLAAPQIGVNLQVVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ Y + ++LNP + S +EGCLSV G R +V R+
Sbjct: 63 GADQVNPRYPDAPLVPR--------TVLLNPVITPLSADEEEGWEGCLSVPGLRGLVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I TG D+ G PI G+ AR++QHECDHL G LY
Sbjct: 115 SHIRYTGFDQYGDPIDRTVDGFHARVVQHECDHLMGKLY 153
>gi|374997156|ref|YP_004972655.1| peptide deformylase [Desulfosporosinus orientis DSM 765]
gi|357215522|gb|AET70140.1| peptide deformylase [Desulfosporosinus orientis DSM 765]
Length = 150
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 94/169 (55%), Gaps = 24/169 (14%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ G VL E A+EV EI S I ++D+MV+ MR A GVGLAAPQIGV R+IV+
Sbjct: 5 QIVEIGAEVLREKAKEVK--EINSS-ITKLLDNMVETMRQAEGVGLAAPQIGVSKRVIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E L+ ++NP + +K + T+ EGCLS+ V R
Sbjct: 62 E-------------------ADGVLVELMNPVILEK-EGTSTAEEGCLSIPNMTGDVTRA 101
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
+ V GL+R G+ + + A AR LQHE DHL+G L++D + KT+R
Sbjct: 102 AKVHVQGLNRQGKMVDIRAEKLLARALQHEIDHLEGILFID-VADKTYR 149
>gi|434399992|ref|YP_007133996.1| peptide deformylase [Stanieria cyanosphaera PCC 7437]
gi|428271089|gb|AFZ37030.1| peptide deformylase [Stanieria cyanosphaera PCC 7437]
Length = 187
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 19/173 (10%)
Query: 69 QNKKAKLP--EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
+ KK K P EI GD VL +PA+ + + + I+ +I +M++ M SA G+GLAAPQ
Sbjct: 8 EKKKLKQPPLEIHYLGDRVLRQPAKRIAKVD---DSIRQLIKEMLQTMYSADGIGLAAPQ 64
Query: 127 IGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
+GV ++IV++ E+ D P L+++NPK+ + S + + EGCLS+
Sbjct: 65 VGVNKQLIVIDC-----------ELDNPDHPP---LVLINPKITRFSSQECITEEGCLSI 110
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G V R +EV+ D G+P K+ A+G AR +QHE DHL+G ++VD++
Sbjct: 111 PGVYLEVTRPEAVEVSFKDEQGKPRKLQASGLLARAIQHEMDHLNGVMFVDRV 163
>gi|381201346|ref|ZP_09908473.1| N-formylmethionyl-tRNA deformylase [Sphingobium yanoikuyae XLDN2-5]
Length = 176
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++A DP L + P E + +Q +IDDM + M APG+GLAA Q+GVP RI+V+
Sbjct: 6 ILEAPDPRLRTIST---PVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRILVM- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D +E +S EE ++P ++ +NP++ K+SD +++ EGCLSV A VER
Sbjct: 62 DLQEP---ESDEEGAPPVKKP---MVFINPEILKESDEQSVYNEGCLSVPDQFAEVERPA 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I + +DRDG+ + G A LQHE DHL+G L++D +
Sbjct: 116 VIRASWMDRDGRIHEEQLEGLLAICLQHEMDHLEGVLFIDHL 157
>gi|389795887|ref|ZP_10198995.1| peptide deformylase [Rhodanobacter fulvus Jip2]
gi|388430070|gb|EIL87275.1| peptide deformylase [Rhodanobacter fulvus Jip2]
Length = 178
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 81/159 (50%), Gaps = 9/159 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V +GS + +I DM M A GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRVAPAVPTAMLGSAELDALIADMFDTMHDAGGVGLAAPQIGVDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ E P +L LNP + S +EGCLSV G R V RY
Sbjct: 64 -------GFDQNERYPDAPAVPRTIL--LNPLITPLSQDMEEGWEGCLSVPGLRGAVSRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G+D G I A G+ AR++QHECDHL G LY
Sbjct: 115 SLIRYQGVDPQGTRIDRTAEGFHARVVQHECDHLIGRLY 153
>gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
gi|381170714|ref|ZP_09879868.1| peptide deformylase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|39931168|sp|Q8PG20.1|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
gi|380688766|emb|CCG36355.1| peptide deformylase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
Length = 170
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S+ Q ++DDM M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ + E K + F +NP++ K L+ EGCLSV G A
Sbjct: 61 FMVIDISDE------KNLPQVF----------VNPEIVSKQGEQ-LYQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQP ++ A G A +QHE DHLDG L+VD + P
Sbjct: 104 VSRADAITVRYLDRQGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSP 152
>gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K]
gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K]
Length = 185
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV DP+L E A+ VD + G I+ ++DDM + M +A GVGLAAPQI V R+IV+
Sbjct: 4 EIVIWPDPILKEVAQPVDRVDDG---IRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
DT Q+ L+ ++NP++ + + EGCLS+ G V+R+
Sbjct: 61 -DTSPRQEGQT-------------LIHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRF 105
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V LDR G+P +++A G A LQHE DHL+GT++VD +
Sbjct: 106 ARVWVRALDRQGKPFELEAEGLLAVALQHETDHLNGTVFVDHL 148
>gi|410944664|ref|ZP_11376405.1| polypeptide deformylase [Gluconobacter frateurii NBRC 101659]
Length = 170
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 75 LPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
L +I + G PVLH+ A V DP S I+ ++ DM++ M A G GLAAPQ+ VPLR+
Sbjct: 3 LLKIARMGHPVLHQVAEPVSDPK---SPEIRRLVSDMLETMADARGAGLAAPQVHVPLRV 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
V +S + + +++NP++ D + EGCLS+ G R V
Sbjct: 60 FVYHVPANRVSDPEQAMLPR---------VLINPEIIPVGDEMMVCSEGCLSIPGLRGDV 110
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT-FRIVENL 250
RY + GLD +G + +A G+ A +LQHE DHL+G LY ++ T F VE +
Sbjct: 111 PRYAKVRYRGLDENGDSVDGEAVGFHANVLQHENDHLNGVLYPQRIQDFTRFGYVEEM 168
>gi|430808710|ref|ZP_19435825.1| peptide deformylase [Cupriavidus sp. HMR-1]
gi|429498885|gb|EKZ97371.1| peptide deformylase [Cupriavidus sp. HMR-1]
Length = 177
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 87/166 (52%), Gaps = 25/166 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L + AR V + + ++ +IDDM M A G GLAAPQIGV L++++
Sbjct: 4 DILKMGDARLLQQARPVT--QFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
FDR P +++NP L+ SD +EGCLSV G
Sbjct: 62 ----------------GFDRNPRYPDAPTVPKTVLINPSLEPLSDEMEDGWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R VV RY ++ TG D G I+ A + AR++QHECDHL G LY
Sbjct: 106 RGVVPRYTRLKYTGFDMMGNRIERVAEDFHARVVQHECDHLIGVLY 151
>gi|445497588|ref|ZP_21464443.1| peptide deformylase 2 [Janthinobacterium sp. HH01]
gi|444787583|gb|ELX09131.1| peptide deformylase 2 [Janthinobacterium sp. HH01]
Length = 178
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V E + ++ +I DM M +A G GLAAPQIGV L++++
Sbjct: 5 EILKMGDPRLLRVAEPVT--EFDTPAMRELIADMFDTMHAANGAGLAAPQIGVNLQLVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
K+ Y ++ +++NP L SD FEGCLSV G R V R+
Sbjct: 63 -GFKQNARYPDAPQVPE--------TVLINPVLTPLSDDKEEGFEGCLSVPGLRGSVPRF 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ + G+D+ QPI D G+ AR++QHE DHL G LY
Sbjct: 114 VKLRYEGVDQFRQPIARDVDGFHARVVQHEVDHLLGVLY 152
>gi|167752475|ref|ZP_02424602.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
gi|167659544|gb|EDS03674.1| peptide deformylase [Alistipes putredinis DSM 17216]
Length = 181
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 24/186 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL- 136
IV G PVL E RE+ P ++ +I+DM + A GVGLAAPQIG +R+ ++
Sbjct: 5 IVVFGAPVLREKCREIGPD---YPEVKKLIEDMFLTLEEAEGVGLAAPQIGKSIRLFIVD 61
Query: 137 -----EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
ED E Y RR F +NP++ + S+ T L+ EGCLS+ G
Sbjct: 62 CTPWGEDHPELADY----------RRAF-----INPEIYEVSEETKLYEEGCLSLPGLHE 106
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V R L I + LD + +P + TG A ++QHE DHL+G ++ D++ P ++++
Sbjct: 107 SVRRSLAIRMRYLDENFEPHDEEFTGLPAWVIQHEYDHLEGVVFTDRLSPLRRNLIKSKL 166
Query: 252 LPLAEG 257
+ L +G
Sbjct: 167 MSLTKG 172
>gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501]
gi|339492105|ref|YP_004712398.1| peptide deformylase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|386018662|ref|YP_005936686.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
gi|158514117|sp|A4VFH8.1|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501]
gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
gi|338799477|gb|AEJ03309.1| peptide deformylase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 168
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 94/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + G I+ ++DDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVDVVDDG---IRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D+ + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|337265142|ref|YP_004609197.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
gi|336025452|gb|AEH85103.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
Length = 176
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E ++ + DDM+ M APG+GLAA QIG PLR++V++ KE
Sbjct: 11 DPILRQVSK---PVERVDAPLRGLADDMLATMYDAPGIGLAAIQIGEPLRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D P + I NP++ + +D +++ EGCLS+ Y A VER + V
Sbjct: 67 ------------DETPAPHVFI-NPEILESADARSVYEEGCLSIPDYYAEVERPASVRVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LDRDG+ +++A G A LQHE DHL+G L++D +
Sbjct: 114 YLDRDGKLQEMEAEGLMATCLQHEIDHLNGVLFIDHI 150
>gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
Length = 164
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 22/164 (13%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL A P + + + ++M + MR GVGLAA Q+G RI V E
Sbjct: 9 GDPVLKSRA---APVKTFDGALARLAEEMFETMREHEGVGLAANQVGRLKRIFVAE---- 61
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
DRR L+++NP +++ S+RT EGCLS+ G R VER + +
Sbjct: 62 -----------VEDRR----LVVVNPAIEEASERTERAEEGCLSIPGVRVEVERPAAVVL 106
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
TG + DG P++++A G AR+LQHE DHLDG L +D++ +T R
Sbjct: 107 TGQNLDGSPLRIEAEGLLARVLQHETDHLDGVLILDRVDRETRR 150
>gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398976375|ref|ZP_10686281.1| peptide deformylase [Pseudomonas sp. GM25]
gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398139211|gb|EJM28212.1| peptide deformylase [Pseudomonas sp. GM25]
Length = 168
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LS------EDRTEPRVF----------INPEFESLTDEMEQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|440743505|ref|ZP_20922814.1| peptide deformylase [Pseudomonas syringae BRIP39023]
gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|440375270|gb|ELQ11980.1| peptide deformylase [Pseudomonas syringae BRIP39023]
Length = 168
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + E I+ ++DDM + M APG+GLAA Q+ V R++V++ + + + E + F
Sbjct: 20 PVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLS------EDRSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+++K +D + EGCLSV G+ V+R + V LDRDG+P ++
Sbjct: 74 ----------INPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELV 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAICIQHECDHLNGKLFVDYL 148
>gi|425896692|ref|ZP_18873283.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397882103|gb|EJK98591.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 168
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ +++ + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED------RSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R +++ LDRDGQP ++
Sbjct: 74 ----------INPEFEALTDEMGQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|134097125|ref|YP_001102786.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338]
gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
2338]
gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
2338]
Length = 191
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 24/170 (14%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE-DTK 140
GDPVLH P R V E + ++ ++DDM + M +A GVGLAA QIGV LR+ V +
Sbjct: 10 GDPVLHNPTRLV---ENFDDELRTLVDDMFETMAAASGVGLAANQIGVDLRLFVYDCPDD 66
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVER 195
E + ++ +++NP L+ ++ +EGCLSV G R
Sbjct: 67 EGVQHRG---------------VVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGR 111
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
+VTG D DG P++V+ TG+ AR LQHE DHLDG LY+ ++V + R
Sbjct: 112 ADWAKVTGSDVDGNPVEVEGTGFFARCLQHETDHLDGFLYLSRLVGRHAR 161
>gi|147678126|ref|YP_001212341.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum
SI]
gi|189083075|sp|A5D1C0.1|DEF_PELTS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146274223|dbj|BAF59972.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum
SI]
Length = 155
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 95/172 (55%), Gaps = 29/172 (16%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ GD +L E A+EV ++ I ++D+M + M A GVGLAAPQIGV R+IV+
Sbjct: 5 KIVELGDRILKERAKEVPKI---NQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D E LL ++NP + + EGCLS+ G V R
Sbjct: 62 -DVGE------------------GLLEMINPVITSCAGHET-DSEGCLSIPGIVGDVTRA 101
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD------KMVPK 242
IEV GLDR G+P++V A G+ AR LQHE DHLDG L+++ K+VPK
Sbjct: 102 SVIEVKGLDRRGKPLEVKAKGYLARALQHEIDHLDGILFIEKAKNIRKLVPK 153
>gi|398926156|ref|ZP_10662317.1| peptide deformylase [Pseudomonas sp. GM48]
gi|398171193|gb|EJM59104.1| peptide deformylase [Pseudomonas sp. GM48]
Length = 168
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+L+ +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RTEPRVF----------INPELEPLTDEMGQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++V LDRDGQP ++ A A +QHECDHL+G L+VD +
Sbjct: 107 RVKVKALDRDGQPYELIAEDLLAVCIQHECDHLNGKLFVDYL 148
>gi|52841298|ref|YP_095097.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|148360273|ref|YP_001251480.1| polypeptide deformylase [Legionella pneumophila str. Corby]
gi|296106683|ref|YP_003618383.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|52628409|gb|AAU27150.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|148282046|gb|ABQ56134.1| polypeptide deformylase [Legionella pneumophila str. Corby]
gi|295648584|gb|ADG24431.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy]
Length = 172
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
++ +P+L + A + E GS ++ +I M +M VG+AAPQIG+ R+IV
Sbjct: 4 LLDKNNPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+Y + E P ++NP LK S +EGCL+ V R +
Sbjct: 63 -GTDYTKRRKPE-------YPIPDTALINPSLKILSQEIQTGYEGCLNCGELMGEVPRAM 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+IE +G D DG I A+G +ARILQHE DHLDG L++D++
Sbjct: 115 EIEYSGFDIDGNRITKKASGLEARILQHEIDHLDGFLFLDRV 156
>gi|284989160|ref|YP_003407714.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
gi|284062405|gb|ADB73343.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
Length = 185
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 92/176 (52%), Gaps = 20/176 (11%)
Query: 68 GQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQI 127
G+ P + +PVLH P V G + ++ ++ DM M +A GVGLAA QI
Sbjct: 5 GRYSGVARPIVTYGSNPVLHRPCAPVT--AFGKD-LRRLVLDMFASMEAADGVGLAANQI 61
Query: 128 GVPLRIIVLE----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGC 183
GV R+ V++ D ++ + Y E L +L P+ + ++ EGC
Sbjct: 62 GVDARVFVIDCPDADGEDVVGYVVNPE-----------LTVLEPREGEPAEEVT--DEGC 108
Query: 184 LSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LSV G A + R V G+D DG P+ ++ATG AR LQHE DHLDGT+YVD++
Sbjct: 109 LSVPGPYAELPRAFRARVDGVDADGAPVSIEATGMAARCLQHEVDHLDGTVYVDRL 164
>gi|419952771|ref|ZP_14468918.1| peptide deformylase [Pseudomonas stutzeri TS44]
gi|387970816|gb|EIK55094.1| peptide deformylase [Pseudomonas stutzeri TS44]
Length = 168
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 94/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P ++ + I+ +IDDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTLAK---PVKVVDDGIRQLIDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFEALTEELDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++V LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKVRALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|338707442|ref|YP_004661643.1| peptide deformylase [Zymomonas mobilis subsp. pomaceae ATCC 29192]
gi|336294246|gb|AEI37353.1| peptide deformylase [Zymomonas mobilis subsp. pomaceae ATCC 29192]
Length = 186
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L E + P E + +Q +IDDM + M APG+GLAA Q+GV R
Sbjct: 2 AVLP-IIEVPDPRLREKSV---PVENFDQNLQTLIDDMFETMYKAPGIGLAAIQVGVAKR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V+ D + + K+ K D+ L+ +NP++ + D +++ EGCLSV A
Sbjct: 58 LLVI-DLQSPDENEGKDNDKGKDKNKHTPLVFINPEITPEGDEESIYNEGCLSVPDQYAD 116
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V+R I LDR+G P + G A LQHE DHL+G L++D +
Sbjct: 117 VKRPKVIHAKWLDRNGMPHEERLDGLLATCLQHEIDHLEGILFIDHL 163
>gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
Length = 178
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V E + ++ +I DM + M + G GLAAPQIGV L++++
Sbjct: 5 EILKMGDPRLLRVAEPVT--EFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLVI- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y S+ ++ + +++NP L SD +EGCLSV G R VV R+
Sbjct: 62 --------YGSRNNVRYPEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPRW 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G+D+ G I D G+ AR++QHECDHL G LY
Sbjct: 114 QALHYEGVDQFGAVISRDVDGFHARVVQHECDHLIGVLY 152
>gi|398878984|ref|ZP_10634088.1| peptide deformylase [Pseudomonas sp. GM67]
gi|398883314|ref|ZP_10638271.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398196976|gb|EJM83966.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398197893|gb|EJM84865.1| peptide deformylase [Pseudomonas sp. GM67]
Length = 168
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ + + + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLS------EDRTEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R ++V LDRDGQP ++
Sbjct: 74 ----------INPEFEPLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|94310371|ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34]
gi|93354223|gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34]
Length = 177
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 87/166 (52%), Gaps = 25/166 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L + AR V + + ++ +IDDM M A G GLAAPQIGV L++++
Sbjct: 4 DILKMGDARLLQQARPV--TQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
FDR P +++NP L+ SD +EGCLSV G
Sbjct: 62 ----------------GFDRNPRYPDAPTVPKTVLINPSLEPLSDEMDDGWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R VV RY ++ TG D G I+ A + AR++QHECDHL G LY
Sbjct: 106 RGVVPRYTRLKYTGFDMMGNRIERVAEDFHARVVQHECDHLIGVLY 151
>gi|399007439|ref|ZP_10709948.1| peptide deformylase [Pseudomonas sp. GM17]
gi|398120202|gb|EJM09870.1| peptide deformylase [Pseudomonas sp. GM17]
Length = 168
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ +++ + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED------RSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R +++ LDRDGQP ++
Sbjct: 74 ----------INPEFEALTDEMGQYQEGCLSVPGFYENVDRPQRVKIRALDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|172041401|ref|YP_001801115.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
gi|448824325|ref|YP_007417494.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7111]
gi|171852705|emb|CAQ05681.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109]
gi|448277822|gb|AGE37246.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7111]
Length = 267
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 87/178 (48%), Gaps = 12/178 (6%)
Query: 78 IVQAGDPVLHEPAREV-----DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
IV AGDPVLH P +V D + +E + I DM + M A GVGLA Q+GV R
Sbjct: 50 IVIAGDPVLHNPTNKVGEPDLDANGVPTEEFKKFIADMHETMDRAHGVGLAGNQVGVAKR 109
Query: 133 IIVLE--DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLS 185
+ V D Q EE A P ++NP L+ + EGCLS
Sbjct: 110 LFVYHCPDIDGPNGEQRTEEEIAAQGGPMRRGTVINPVLETSEIPETMPDEYEDEEGCLS 169
Query: 186 VNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT 243
V GY R VTG+D +G+P+ V+ G+ AR LQHE HLDG LY D ++ +
Sbjct: 170 VPGYSFPTGRADWARVTGIDENGEPVTVEGYGFFARCLQHEVGHLDGFLYTDTLIGRN 227
>gi|282882057|ref|ZP_06290698.1| peptide deformylase [Peptoniphilus lacrimalis 315-B]
gi|281298087|gb|EFA90542.1| peptide deformylase [Peptoniphilus lacrimalis 315-B]
Length = 166
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 20/169 (11%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
D +L + ++ V E ++R++ ++DDM + M SA GVGLAAPQ+G+ R+IV++D E
Sbjct: 11 DTILRKKSKTV---ENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIVVDDRDEE 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ ++NP + +K + + EGCLS+ G + V+R DI+VT
Sbjct: 68 NQHR---------------FYLINPVITRKEG-SEVCREGCLSIPGKQGDVKRATDIDVT 111
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
DG+ K++ + ARI+QHE DHLDG LY D+ K +RIV+ D
Sbjct: 112 YNTLDGKEEKINCKDFLARIIQHEIDHLDGILYTDR-AEKMYRIVQKDD 159
>gi|429197825|ref|ZP_19189697.1| peptide deformylase [Streptomyces ipomoeae 91-03]
gi|428666465|gb|EKX65616.1| peptide deformylase [Streptomyces ipomoeae 91-03]
Length = 179
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 17/170 (10%)
Query: 70 NKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
+ ++ + GDPVLH P EV E G E ++ +++DM M A GVGLAA Q+G
Sbjct: 8 GARGRVLPMTLLGDPVLHAPCEEVT--EFGPELVR-LVEDMFATMYDARGVGLAANQVGR 64
Query: 130 PLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
LR+ V + + E+++ L ++NP+L EGCLS+ G
Sbjct: 65 GLRVFVYDCPDD-------EDVR-------HLGHVVNPRLVSVEGLVLRGPEGCLSLPGL 110
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
A ERY + V G DG ++V TG+ AR LQHECDHL+G +YVD++
Sbjct: 111 EAGTERYDEAVVEGFTVDGDRVRVRGTGFFARCLQHECDHLEGRVYVDRL 160
>gi|399017274|ref|ZP_10719471.1| peptide deformylase [Herbaspirillum sp. CF444]
gi|398104045|gb|EJL94202.1| peptide deformylase [Herbaspirillum sp. CF444]
Length = 178
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A V + G+ + +I DM + MR+ G GLAAPQIGV L++++
Sbjct: 5 EILKMGDPRLLRQAEPVQ--QFGTPEMDTLIADMFETMRAVNGAGLAAPQIGVNLQLVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
K+ Y E+ +++NP L + D +EGCLSV G R VV R+
Sbjct: 63 -GFKKNQRYPDAPEVPE--------TVLINPTLTQLGDDMEDGWEGCLSVPGLRGVVPRW 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D G I G+ AR++QHECDHL G LY
Sbjct: 114 SRLRYEGFDEAGNRIDRTVDGFHARVVQHECDHLWGILY 152
>gi|308177361|ref|YP_003916767.1| peptide deformylase [Arthrobacter arilaitensis Re117]
gi|307744824|emb|CBT75796.1| peptide deformylase [Arthrobacter arilaitensis Re117]
Length = 190
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 97/188 (51%), Gaps = 22/188 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I G+PVLH+ A EV + + ++ ++ DM M A GVGLAAPQIG+ LR+
Sbjct: 5 QITVYGEPVLHKRAVEVTEFD---DALRALVADMHLTMDEAHGVGLAAPQIGLGLRMF-- 59
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFF-----EGCLSVNGYRA 191
+Y ++ A +R +++NPKL A EGCLSV G
Sbjct: 60 -------TYVFADQDDAPERG-----VVINPKLTLSKVSQAPAHPDEDSEGCLSVPGLNY 107
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
++R +V G D G PI +A GW ARI+QHE DHLDG LYVDK+ P+ + +
Sbjct: 108 PLQRADYAKVEGFDEFGNPISFEAHGWFARIMQHEYDHLDGYLYVDKLQPRWEKRWKKAK 167
Query: 252 LPLAEGCP 259
L G P
Sbjct: 168 KALGWGVP 175
>gi|357024209|ref|ZP_09086370.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
gi|355543895|gb|EHH13010.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
Length = 176
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E ++ + DM+ M APG+GLAA QIG PLR++V++ KE
Sbjct: 11 DPVLRQVSK---PVERVDAPLRKLAGDMLDTMYDAPGIGLAAIQIGEPLRLLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D P + I NP++ + SD+ +++ EGCLS+ Y A VER + V
Sbjct: 67 ------------DETPAPHVFI-NPEILESSDQRSVYEEGCLSIPDYYAEVERPASVRVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
LDRDG+ ++ A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YLDRDGKLQEMQAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFK 163
>gi|422620759|ref|ZP_16689434.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|422628602|ref|ZP_16693810.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|422665996|ref|ZP_16725866.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|424065254|ref|ZP_17802734.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424069923|ref|ZP_17807365.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440719870|ref|ZP_20900293.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|440728125|ref|ZP_20908344.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|443640746|ref|ZP_21124596.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|408001647|gb|EKG41942.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408003560|gb|EKG43731.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440362232|gb|ELP99432.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|440367110|gb|ELQ04179.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|443280763|gb|ELS39768.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
Length = 168
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 87/145 (60%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + E I+ ++DDM + M APG+GLAA Q+ V R++V++ ++
Sbjct: 20 PVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE-------------- 65
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
DR + ++++NP+++K +D + EGCLSV G+ V+R + V LDRDG+P ++
Sbjct: 66 DRS--EPMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELV 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAICIQHECDHLNGKLFVDYL 148
>gi|300813955|ref|ZP_07094254.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511929|gb|EFK39130.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 166
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 20/169 (11%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
D +L + ++ V E ++R++ ++DDM + M SA GVGLAAPQ+G+ R+IV++D E
Sbjct: 11 DTILRKKSKTV---ENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIVVDDRDEE 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ ++NP + +K + + EGCLS+ G + V+R DI+VT
Sbjct: 68 NQHR---------------FYLINPVITRKEG-SEVCREGCLSIPGKQGDVKRATDIDVT 111
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
DG+ K++ + ARI+QHE DHLDG LY D+ K +RIV+ D
Sbjct: 112 YNTLDGKEEKINCEDFLARIIQHEIDHLDGILYTDR-AEKMYRIVQKDD 159
>gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45]
gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45]
Length = 176
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 12/148 (8%)
Query: 94 DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKA 153
DP S+ ++ + DDM++ M APG+GLAAPQ+G+ R+IVL+ K Q E
Sbjct: 21 DPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVLDCAK-----QDNGETP- 74
Query: 154 FDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKV 213
RP L+++NP++ SD +++ EGCLS+ A VER +EV LDRDG+ K
Sbjct: 75 ---RP---LVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDGKLQKE 128
Query: 214 DATGWQARILQHECDHLDGTLYVDKMVP 241
+ G A +QHE DHLDG L++D + P
Sbjct: 129 EFDGLWATCVQHEIDHLDGKLFIDYLKP 156
>gi|91784124|ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400]
gi|385209099|ref|ZP_10035967.1| peptide deformylase [Burkholderia sp. Ch1-1]
gi|91688078|gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400]
gi|385181437|gb|EIF30713.1| peptide deformylase [Burkholderia sp. Ch1-1]
Length = 177
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A VD + + ++ DM + M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIADPVD--HFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ E D P +++NP + S +EGCLSV G R V R+
Sbjct: 62 -------GFGHNERYP--DAPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAVSRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I+ G D+ G+PI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330]
gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840]
gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365]
gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445]
gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo]
gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457]
gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A]
gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915]
gi|340792797|ref|YP_004758261.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|376278980|ref|YP_005109013.1| peptide deformylase [Brucella suis VBI22]
gi|384223540|ref|YP_005614705.1| peptide deformylase [Brucella suis 1330]
gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330]
gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
2308]
gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840]
gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365]
gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445]
gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo]
gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457]
gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A]
gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915]
gi|340561256|gb|AEK56493.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|343384988|gb|AEM20479.1| peptide deformylase [Brucella suis 1330]
gi|358260418|gb|AEU08151.1| peptide deformylase [Brucella suis VBI22]
Length = 187
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E ++++ DM M APG+GLAA Q+G P+R++V++ KE
Sbjct: 23 DPVLRQVSK---PVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKE- 78
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP + + SD+ + + EGCLS+ Y A VER ++V
Sbjct: 79 -------------GEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVN 125
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
D DG+P ++A G A LQHE DHL+G L++D
Sbjct: 126 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFID 160
>gi|388455635|ref|ZP_10137930.1| polypeptide deformylase [Fluoribacter dumoffii Tex-KL]
gi|397665101|ref|YP_006506639.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Legionella
pneumophila subsp. pneumophila]
gi|395128512|emb|CCD06728.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Legionella
pneumophila subsp. pneumophila]
Length = 172
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
++ DP+L + A + E GS ++ +I M +M VG+AAPQIG+ R+IV
Sbjct: 4 LLDKNDPILRQTAEPIKESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
Y + E P ++NP LK S +EGCL+ V R +
Sbjct: 63 -GTNYTKRRKPE-------YPIPDTALINPALKILSQEIQTGYEGCLNCGELMGEVPRAM 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+IE +G D DG I A+G +ARILQHE DHL+G L++D++
Sbjct: 115 EIEYSGFDIDGNRITKKASGLEARILQHEIDHLNGFLFLDRV 156
>gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19]
gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038]
gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40]
gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94]
gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33]
gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513]
gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686]
gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99]
gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1]
gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
gi|376271532|ref|YP_005114577.1| peptide deformylase [Brucella abortus A13334]
gi|376277456|ref|YP_005153517.1| peptide deformylase [Brucella canis HSK A52141]
gi|384213548|ref|YP_005602631.1| peptide deformylase [Brucella melitensis M5-90]
gi|384410650|ref|YP_005599270.1| peptide deformylase [Brucella melitensis M28]
gi|384447147|ref|YP_005661365.1| peptide deformylase [Brucella melitensis NI]
gi|423168232|ref|ZP_17154934.1| peptide deformylase [Brucella abortus bv. 1 str. NI435a]
gi|423172333|ref|ZP_17159007.1| peptide deformylase [Brucella abortus bv. 1 str. NI474]
gi|423173936|ref|ZP_17160606.1| peptide deformylase [Brucella abortus bv. 1 str. NI486]
gi|423175812|ref|ZP_17162478.1| peptide deformylase [Brucella abortus bv. 1 str. NI488]
gi|423181762|ref|ZP_17168402.1| peptide deformylase [Brucella abortus bv. 1 str. NI010]
gi|423184895|ref|ZP_17171531.1| peptide deformylase [Brucella abortus bv. 1 str. NI016]
gi|423188048|ref|ZP_17174661.1| peptide deformylase [Brucella abortus bv. 1 str. NI021]
gi|423190465|ref|ZP_17177074.1| peptide deformylase [Brucella abortus bv. 1 str. NI259]
gi|54036953|sp|P63914.1|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|54040741|sp|P63913.1|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19]
gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038]
gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40]
gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94]
gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33]
gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99]
gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513]
gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686]
gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1]
gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28]
gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90]
gi|349745144|gb|AEQ10686.1| peptide deformylase [Brucella melitensis NI]
gi|363402704|gb|AEW19673.1| peptide deformylase [Brucella abortus A13334]
gi|363405830|gb|AEW16124.1| peptide deformylase [Brucella canis HSK A52141]
gi|374536755|gb|EHR08275.1| peptide deformylase [Brucella abortus bv. 1 str. NI474]
gi|374538725|gb|EHR10232.1| peptide deformylase [Brucella abortus bv. 1 str. NI435a]
gi|374539937|gb|EHR11439.1| peptide deformylase [Brucella abortus bv. 1 str. NI486]
gi|374546352|gb|EHR17812.1| peptide deformylase [Brucella abortus bv. 1 str. NI010]
gi|374547195|gb|EHR18654.1| peptide deformylase [Brucella abortus bv. 1 str. NI016]
gi|374554228|gb|EHR25641.1| peptide deformylase [Brucella abortus bv. 1 str. NI021]
gi|374556505|gb|EHR27910.1| peptide deformylase [Brucella abortus bv. 1 str. NI259]
gi|374556612|gb|EHR28016.1| peptide deformylase [Brucella abortus bv. 1 str. NI488]
Length = 175
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E ++++ DM M APG+GLAA Q+G P+R++V++ KE
Sbjct: 11 DPVLRQVSK---PVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP + + SD+ + + EGCLS+ Y A VER ++V
Sbjct: 67 -------------GEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
D DG+P ++A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFK 163
>gi|399061466|ref|ZP_10746138.1| peptide deformylase [Novosphingobium sp. AP12]
gi|398035685|gb|EJL28918.1| peptide deformylase [Novosphingobium sp. AP12]
Length = 179
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 14/176 (7%)
Query: 77 EIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
EI++ G+P+L AR V DP + G ++ II DM M A GVGLAAPQIGV LR+++
Sbjct: 4 EILKMGNPLLLRVARAVEDPLDPG---LRPIIADMYDTMHGANGVGLAAPQIGVDLRLMI 60
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ + + D P + ++NP L+ S+ +EGCLSV G R +V R
Sbjct: 61 ---------FGFEANPRYPDEAPVPVTTLINPWLEVLSEDVENGWEGCLSVPGMRGLVPR 111
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT-FRIVENL 250
+ I G DG + +A + AR+ QHE DHLDG LY ++ T F ++ L
Sbjct: 112 FTHIRYGGTLEDGAALIREARSFHARVFQHEFDHLDGVLYPHRITDMTQFGFIDAL 167
>gi|218442239|ref|YP_002380568.1| peptide deformylase [Cyanothece sp. PCC 7424]
gi|218174967|gb|ACK73700.1| peptide deformylase [Cyanothece sp. PCC 7424]
Length = 176
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI Q G+P+L + A+ V+ I +Q +IDD++ SA GVG+AAPQ+ R+ ++
Sbjct: 6 EIAQLGNPILRQNAQSVE--NITDITLQTLIDDLIATAASANGVGIAAPQVSQSYRLFIV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
S S A + P ++ NP++ S +EGCLSV G R +V RY
Sbjct: 64 A------SRPSPRYPNAPEMNPTPMI---NPRIISHSPEKVKGWEGCLSVPGLRGLVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I V LDR G + + T + ARI QHE DHLDG L+VD++
Sbjct: 115 HTITVEYLDRYGNLQRQELTDFVARIFQHELDHLDGILFVDRL 157
>gi|389680439|ref|ZP_10171789.1| peptide deformylase [Pseudomonas chlororaphis O6]
gi|388555544|gb|EIM18787.1| peptide deformylase [Pseudomonas chlororaphis O6]
Length = 168
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ +++ + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED------RSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R +++ LDRDGQP ++
Sbjct: 74 ----------INPEFEPLTDEMGQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|406989021|gb|EKE08848.1| hypothetical protein ACD_16C00248G0030 [uncultured bacterium]
Length = 183
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 7/170 (4%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
++ +I G P+L +PA V+ + ++ +I DM + GLAAPQ+ VPL
Sbjct: 2 SGRILKIAHMGQPILQKPAAPVEGYD--DPQVLQLIRDMEATVSYMNCSGLAAPQVFVPL 59
Query: 132 RIIVLE--DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
R+++ T +Y+ E +D +++NP L SD+ +E CLS+ G
Sbjct: 60 RVVIFRVLTTTNNPAYELTPE---YDPEGVPWTVMINPTLTPLSDQITTGWESCLSLPGL 116
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V RY IE L++DGQ K A G+ AR++QHECDHLDG LY K+
Sbjct: 117 MGRVSRYHSIEYRYLNKDGQEEKRQAHGFHARVVQHECDHLDGVLYPTKI 166
>gi|91775819|ref|YP_545575.1| peptide deformylase [Methylobacillus flagellatus KT]
gi|91709806|gb|ABE49734.1| Peptide deformylase [Methylobacillus flagellatus KT]
Length = 177
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ G+P+L + A V + + + +I DM M G G+AAPQIGV LR+++
Sbjct: 6 VLKMGEPLLLQKAEPVQ--QFDTPELHALIKDMEDTMAHLNGAGIAAPQIGVSLRVVIF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
Y E++ P+ +L +NP L + +EGCLSV G R +V RY
Sbjct: 63 GVGHNPRYPDAEQV------PYTVL--VNPTLTPIGEELEDGWEGCLSVPGMRGIVPRYQ 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ TG D+ G PI +G+ AR++QHECDHLDG LY
Sbjct: 115 RLHYTGYDQYGNPIDRLVSGFHARVVQHECDHLDGILY 152
>gi|380510245|ref|ZP_09853652.1| peptide deformylase [Xanthomonas sacchari NCPPB 4393]
Length = 170
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 92/169 (54%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAEVTSAAFQRLLDDMFETMYDAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ ++E + Q + +NP++ ++ D ++ EGCLSV G A
Sbjct: 61 FMVIDVSEEKNAPQ----------------VFINPQIVQR-DGEQVYQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQP ++ G A +QHE DHLDG L+VD + P
Sbjct: 104 VTRADAITVRYLDRQGQPQELSTDGLLAVCVQHEMDHLDGKLFVDYLSP 152
>gi|422323718|ref|ZP_16404757.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
Length = 170
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 98/167 (58%), Gaps = 20/167 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP LH+ A+ V E+ +RI+ ++ DM + M APGVGLAA Q+ V R
Sbjct: 2 ALLP-ILRYPDPRLHKKAKPV--AEV-DDRIRQLVRDMAETMYDAPGVGLAATQVDVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ +S +S + LL+++NP++ +SD ++ EGCLSV G
Sbjct: 58 VVVID-----VSEESNQ-----------LLVLINPEITWRSDDYKIYEEGCLSVPGIYDE 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
VER I LD DG+P + DA G A +QHE DHL+G ++V+ +
Sbjct: 102 VERASRIRCKALDIDGKPFEFDADGLLAVCVQHELDHLEGKVFVEYL 148
>gi|270308074|ref|YP_003330132.1| peptide deformylase [Dehalococcoides sp. VS]
gi|270153966|gb|ACZ61804.1| peptide deformylase [Dehalococcoides sp. VS]
Length = 167
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 25/164 (15%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + +PVL + A++V P S IQ +IDDM++ M SA G GLAAPQ+GV LR++V
Sbjct: 6 ICELPEPVLRKKAKKV-PSIDSS--IQTLIDDMIETMSSADGAGLAAPQVGVSLRLVVFR 62
Query: 138 --DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
D KE +++NP++ KK + + EGCLS+ GY + R
Sbjct: 63 EPDAKEAT-------------------VLINPEIVKKEGQRQVT-EGCLSIPGYFGELTR 102
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ GLDR G+ ++ TG A++L+HE +HLDG LY+D +
Sbjct: 103 AETVTAKGLDRHGKACRIKGTGIVAQLLEHETEHLDGILYIDHL 146
>gi|440685049|ref|YP_007159844.1| Peptide deformylase [Anabaena cylindrica PCC 7122]
gi|428682168|gb|AFZ60934.1| Peptide deformylase [Anabaena cylindrica PCC 7122]
Length = 173
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 12/170 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+Q G+P+L + A V+ +I E IQ +IDD++ + A GVG+AAPQ+ R+ ++
Sbjct: 7 IIQLGNPILRQKAVWVE--DIHGEHIQKLIDDLIATVSQANGVGIAAPQVAESYRLFIV- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
S+ + D + ++NPK+ S +EGCLS+ G R +V RY
Sbjct: 64 --------ASRPNSRYPDAPEMEPTAMINPKIIAHSTEVVKGWEGCLSIPGIRGLVPRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+IE+ DR+ Q K + + + ARI QHE DHL+G +++D+ V T+ ++
Sbjct: 116 EIEIEYTDRNCQIQKQELSDFIARIFQHEYDHLEGKVFLDR-VESTYELM 164
>gi|359409470|ref|ZP_09201938.1| peptide deformylase [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676223|gb|EHI48576.1| peptide deformylase [SAR116 cluster alpha proteobacterium HIMB100]
Length = 168
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 90/156 (57%), Gaps = 17/156 (10%)
Query: 84 PVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYI 143
PVL + A VD EI E I + DDM M APG+GLAA Q+G+ R+IV++ +E
Sbjct: 12 PVLRQVAEPVD--EITDE-ILTLADDMADTMYDAPGIGLAANQVGILKRVIVMDCARE-- 66
Query: 144 SYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTG 203
+E+ A L + NP++ +SD TA EGCLS+ G+ A V+R ++ V
Sbjct: 67 -----DEVPA-------LWKMFNPEIIWRSDETAKMEEGCLSIPGHNAEVKRPAEVHVAY 114
Query: 204 LDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LD DG ++ ATG A +QHE DHL+G L++D +
Sbjct: 115 LDSDGVKQEMQATGLLAACVQHEIDHLNGVLFIDHL 150
>gi|416905341|ref|ZP_11930787.1| peptide deformylase [Burkholderia sp. TJI49]
gi|325529284|gb|EGD06233.1| peptide deformylase [Burkholderia sp. TJI49]
Length = 177
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L E AR V+ + + I+ DM + M A G GLAAPQIGV L+II+
Sbjct: 4 EILKMGDPRLLEVARPVE--RFDTPELHEIVADMFETMHHANGAGLAAPQIGVGLQIIIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S + P +++NPKL+ +EGCLSV G R VV RY
Sbjct: 62 -------GFGSNNRYP--EAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ +G D+ G + A G+ AR++QHE DHL G LY
Sbjct: 113 AKVRYSGFDQFGAKLDRVAEGFHARVVQHEYDHLIGKLY 151
>gi|404399321|ref|ZP_10990905.1| peptide deformylase [Pseudomonas fuscovaginae UPB0736]
Length = 179
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 13/166 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V P S ++ +IDDM + M GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDARLLRVAPPVPPEMFDSPQLWQLIDDMFQTMEHVGGVGLAAPQIGVDLQLVIF 63
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
E ++ Y ++ + +++NP + +EGCLSV G R VE
Sbjct: 64 GFERSERYPEAEAVSQT-----------ILINPLITPLGPELEEGWEGCLSVPGLRGAVE 112
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
RY I G G+P+ A G+ AR++QHECDHL G LY ++
Sbjct: 113 RYRRIRYEGFTPKGEPLVRVAEGFHARVVQHECDHLIGRLYPSRIT 158
>gi|359788025|ref|ZP_09291009.1| peptide deformylase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359256230|gb|EHK59102.1| peptide deformylase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 176
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ V G++ + ++ + DDM++ M APG+GLAA QIG PLR++V++ KE
Sbjct: 11 DPVLRQVSKLV--GQVDAPLLK-LADDMLETMYDAPGIGLAAIQIGEPLRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP++ + + A++ EGCLS+ Y A VER + V
Sbjct: 67 -------------GEPPAPQLFINPEIVETGEGRAVYEEGCLSIPDYYAEVERPATVRVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
LDRDG+ ++DA G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YLDRDGKLQEIDAEGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFK 163
>gi|374857391|dbj|BAL60244.1| peptide deformylase [uncultured candidate division OP1 bacterium]
Length = 173
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 22/157 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L A+E+ + + I+ + D M++ M A G GLAAPQ+GV RII + D ++
Sbjct: 10 DPILRRRAQEI---SVIDDEIKRLADAMIETMVLAKGYGLAAPQVGVLKRIITI-DVED- 64
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D ++NP++ KKSD T ++ EGCLS+ G A R + V
Sbjct: 65 -----------------DFYALINPEIIKKSDETEVWVEGCLSIPGVEAEFARPAKVTVR 107
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LD DG + ++ G AR+LQHE DHLDG L++D +
Sbjct: 108 ALDPDGNEVLLERAGLAARVLQHEIDHLDGVLFIDYL 144
>gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster
bacterium HF4000_37C10]
Length = 185
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 6/165 (3%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L EI+ + +L E + V+ + E +Q ++DDM++ M +APG+GLAA Q+GVP R+I
Sbjct: 3 LREILTEPNKLLREKSLAVEEVD---EDLQKLMDDMLETMYAAPGIGLAAIQVGVPKRVI 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VL D + +S + K +R+ + + +NP++ KS +++ EGCLSV G A +
Sbjct: 60 VL-DIRWRDKSESTSDEKQVERK--NPMCFVNPEIIAKSTNNSIYEEGCLSVPGQFAEIA 116
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R V LD GQP + A G A +QHE DHL+G L++D +
Sbjct: 117 RSDKCHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYL 161
>gi|424808894|ref|ZP_18234283.1| peptide deformylase [Vibrio mimicus SX-4]
gi|342323846|gb|EGU19629.1| peptide deformylase [Vibrio mimicus SX-4]
Length = 197
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 104/182 (57%), Gaps = 22/182 (12%)
Query: 61 AGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP-G 119
A +L L + + EI+ A DP L +++V ++ S +Q +IDD++ + + G
Sbjct: 18 ALFLFNLSSKETMAVLEILTAPDPRLRVQSKQV--TDVAS--VQTLIDDLLDTLYATDNG 73
Query: 120 VGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF 179
+GLAAPQ+G I+V++ + D R +++I NPK+ S++ +
Sbjct: 74 IGLAAPQVGREEAIVVIDLS---------------DNRDEPMVLI-NPKVVSGSNK-EMG 116
Query: 180 FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
EGCLSV Y A VERY + V LDRDG+P+K++++ + A ++QHE DHL G L++D +
Sbjct: 117 QEGCLSVPDYYADVERYTSVVVEALDRDGKPLKIESSDFLAIVMQHEIDHLSGNLFIDYL 176
Query: 240 VP 241
P
Sbjct: 177 SP 178
>gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7]
gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7]
Length = 168
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ +IDDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG+P + A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGKPFEEVAEGLLAVCIQHECDHLNGRLFVDYL 148
>gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 168
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + E I+ ++DDM + M APG+GLAA Q+ V R++V++ ++
Sbjct: 20 PVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE-------------- 65
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
DR + ++ +NP+++K +D + EGCLSV G+ V+R + V LDRDG+P ++
Sbjct: 66 DRS--EPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYEMV 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAICIQHECDHLNGKLFVDYL 148
>gi|409405981|ref|ZP_11254443.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
[Herbaspirillum sp. GW103]
gi|386434530|gb|EIJ47355.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
[Herbaspirillum sp. GW103]
Length = 178
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 15/161 (9%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ V + G+ ++ +++DM + MR+ G GLAAPQIGV L++++
Sbjct: 5 EILKMGDPRLLRQAQAVT--QFGTPELEQLVEDMFETMRAVNGAGLAAPQIGVDLQLVIF 62
Query: 137 E--DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+ Y + E +++NP L S++ +EGCLSV G R VV
Sbjct: 63 GFGHNQRYPDAPAVPET-----------VLINPVLTPLSEQEEDGWEGCLSVPGMRGVVP 111
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R+ + G+D+ G+ I G+ AR++QHECDHL G LY
Sbjct: 112 RWTRLRYQGVDQYGKVIDRTVDGFHARVVQHECDHLQGILY 152
>gi|357031742|ref|ZP_09093685.1| polypeptide deformylase [Gluconobacter morbifer G707]
gi|356414972|gb|EHH68616.1| polypeptide deformylase [Gluconobacter morbifer G707]
Length = 170
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 19/169 (11%)
Query: 75 LPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
L +I + G+PVLH+ A V DPG S I+ ++ DM++ M A G GLAAPQ+ PLR+
Sbjct: 3 LLKIARMGNPVLHQVATPVSDPG---SPEIRRLVGDMLETMADARGAGLAAPQVHNPLRL 59
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLM---ILNPKLKKKSDRTALFFEGCLSVNGYR 190
V ++ P D L+ ++NP++ D + EGCLS+ G R
Sbjct: 60 FVYHVPANRVA------------NPEDSLLPRVLINPEITPVGDDMMVCSEGCLSIPGLR 107
Query: 191 AVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V R+ I GLD +G ++ +A G+ A +LQHE DHL+G LY ++
Sbjct: 108 GDVPRHAKIHYRGLDMNGNVLEGEAAGFHANVLQHEYDHLEGILYPQRI 156
>gi|422224061|ref|ZP_16383869.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
gi|422589569|ref|ZP_16664230.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422652050|ref|ZP_16714839.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407992704|gb|EKG34275.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
Length = 168
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + E I+ ++DDM + M APG+GLAA Q+ V R++V++ ++
Sbjct: 20 PVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE-------------- 65
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
DR + ++ +NP+++K +D + EGCLSV G+ V+R + V LDRDG+P ++
Sbjct: 66 DRS--EPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELV 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAICIQHECDHLNGKLFVDYL 148
>gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422583065|ref|ZP_16658194.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422595418|ref|ZP_16669706.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422606582|ref|ZP_16678590.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
gi|422682534|ref|ZP_16740799.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 168
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + E I+ ++DDM + M APG+GLAA Q+ V R++V++ ++
Sbjct: 20 PVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE-------------- 65
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
DR + ++ +NP+++K +D + EGCLSV G+ V+R + V LDRDG+P ++
Sbjct: 66 DRS--EPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELV 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAICIQHECDHLNGKLFVDYL 148
>gi|254384297|ref|ZP_04999640.1| peptide deformylase 2 [Streptomyces sp. Mg1]
gi|194343185|gb|EDX24151.1| peptide deformylase 2 [Streptomyces sp. Mg1]
Length = 185
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 85/163 (52%), Gaps = 25/163 (15%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE---- 137
GDPVLH EV E G + +I+DM M +A GVGLAA QIGV R+ V +
Sbjct: 20 GDPVLHSACAEVT--EFGPV-LDRLIEDMFATMYAAEGVGLAANQIGVGQRVFVYDCPDD 76
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D ++ + I+NP+L EGCLS+ G A +R+
Sbjct: 77 DDVRHVGH------------------IVNPRLVAADGDEIRGPEGCLSLPGLEAGTDRFD 118
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
V G+ DG P++V+ TG+ AR LQHECDHLDGT+Y D++
Sbjct: 119 RAVVEGVTSDGAPVRVEGTGFFARCLQHECDHLDGTVYADRVT 161
>gi|42524171|ref|NP_969551.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100]
gi|39576379|emb|CAE80544.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100]
Length = 201
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 14/163 (8%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL------ 136
DP L E ++ V G E I + +DMV+ M A G+GLAAPQ+G +R++V+
Sbjct: 10 DPKLREVSQPVKT--FGPE-IAKLAEDMVETMYHANGIGLAAPQVGELVRMVVIDTRPKD 66
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + Y Y+ E++A ++P L+++NP++ K +T F EGCLS+ GY VERY
Sbjct: 67 EKGRRY-KYEEMTELEAAVKQP---LILINPEIVKGEGKTT-FDEGCLSIPGYYETVERY 121
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
IE+ D +G+ V G A +QHE DHL+GTL++D +
Sbjct: 122 NYIEMKAFDVNGKEYIVKTDGLLAICMQHEMDHLEGTLFIDHL 164
>gi|33591309|ref|NP_878953.1| peptide deformylase [Bordetella pertussis Tohama I]
gi|33598175|ref|NP_885818.1| peptide deformylase [Bordetella parapertussis 12822]
gi|384202597|ref|YP_005588336.1| peptide deformylase [Bordetella pertussis CS]
gi|408414142|ref|YP_006624849.1| peptide deformylase [Bordetella pertussis 18323]
gi|410471743|ref|YP_006895024.1| peptide deformylase [Bordetella parapertussis Bpp5]
gi|427816084|ref|ZP_18983148.1| peptide deformylase [Bordetella bronchiseptica 1289]
gi|39931029|sp|Q7W0Q0.1|DEF1_BORPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|39931034|sp|Q7W4K0.1|DEF2_BORPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|33566733|emb|CAE38944.1| peptide deformylase [Bordetella parapertussis]
gi|33570951|emb|CAE40418.1| peptide deformylase [Bordetella pertussis Tohama I]
gi|332380711|gb|AEE65558.1| peptide deformylase [Bordetella pertussis CS]
gi|401776312|emb|CCJ61488.1| peptide deformylase [Bordetella pertussis 18323]
gi|408441853|emb|CCJ48350.1| peptide deformylase [Bordetella parapertussis Bpp5]
gi|410567084|emb|CCN24654.1| peptide deformylase [Bordetella bronchiseptica 1289]
Length = 176
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + ++ +IDDM + M A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + P +L NP ++ SD +EGCLSV G R +V RY
Sbjct: 62 ------GFERNDRYPDAPAVPRTIL--CNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I +G D GQ I+ +A G+ AR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLY 151
>gi|398900910|ref|ZP_10649897.1| peptide deformylase [Pseudomonas sp. GM50]
gi|398180739|gb|EJM68317.1| peptide deformylase [Pseudomonas sp. GM50]
Length = 168
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ +++ + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED------RSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R +++ LDRDGQP ++
Sbjct: 74 ----------INPEFEVLTDEVDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180]
gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180]
Length = 185
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 21/176 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I+ DP L + AR P E ++I+ ++DDM++ M +APG+GLAA Q+ V +IIV+
Sbjct: 5 DILTFPDPRLRQKAR---PVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIVI 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ ++ + + L +NP+L + T EGCLSV G+ V R
Sbjct: 62 DVSEGHDTP----------------LCFINPRLVAREG-TEQMDEGCLSVPGFFETVTRA 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENLD 251
+ V LDRDG+P K+DA G A +QHE DHLDG L+VD + + K RI L+
Sbjct: 105 ERVTVEALDRDGKPFKLDADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLE 160
>gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
gi|355650971|ref|ZP_09056399.1| peptide deformylase [Pseudomonas sp. 2_1_26]
gi|386062991|ref|YP_005978295.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|421177852|ref|ZP_15635497.1| peptide deformylase [Pseudomonas aeruginosa CI27]
gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
gi|348031550|dbj|BAK86910.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|354826495|gb|EHF10707.1| peptide deformylase [Pseudomonas sp. 2_1_26]
gi|404528714|gb|EKA38777.1| peptide deformylase [Pseudomonas aeruginosa CI27]
Length = 168
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ +IDDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG P + A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|422940171|ref|ZP_16967518.1| peptide deformylase [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339889893|gb|EGQ79108.1| peptide deformylase [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 174
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + G+ VL + A+EV+ EI E + +DDMV+ M GVGLAAPQ+GV R+ V
Sbjct: 4 EIKRYGEEVLKQIAKEVELNEINDE-FRKFLDDMVETMYETDGVGLAAPQVGVSKRVFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D + I+NP + ++ T F EGCLSV G VER
Sbjct: 63 DDGNGVVR------------------KIINPIVVPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ +G+ ++ A + A ++QHE DHLDG L+V+K+ P T R++
Sbjct: 105 KRVLLKYLNENGEEVEEIAENFLAVVVQHENDHLDGILFVEKISPMTKRLI 155
>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas
Aeruginosa
gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas
Aeruginosa
gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
Length = 180
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ +IDDM + M APG+GLAA Q+ V RI+V++
Sbjct: 18 ILEFPDPRLRTIAK---PVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 74
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 75 LSED------KSEPRVF----------INPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQ 118
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG P + A G A +QHECDHL+G L+VD +
Sbjct: 119 KVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYL 160
>gi|390451060|ref|ZP_10236642.1| peptide deformylase [Nitratireductor aquibiodomus RA22]
gi|389661517|gb|EIM73126.1| peptide deformylase [Nitratireductor aquibiodomus RA22]
Length = 176
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L E ++ P E ++++ DDM+ M APG+GLAA Q+G PLR++V++
Sbjct: 11 DPILRETSK---PVERFDDQLRTFADDMLATMYDAPGIGLAAIQVGEPLRMLVID----- 62
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+S + +E ++++NP++ +D+ + EGCLS+ Y A VER + V
Sbjct: 63 VSEKDEEPAP---------MVVINPQIVASTDQRNVHEEGCLSIPDYYAEVERPAGVTVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
LD DG+ V+A G A LQHE DHL+G L++D MV + FR
Sbjct: 114 YLDLDGKQQTVEADGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFR 163
>gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
gi|254767609|sp|B9L0C1.1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
Length = 176
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+ GDP L + A + + E ++ + D+ +R+A G+GLAAPQIGV RIIV+
Sbjct: 6 IITEGDPRLRQKAIRI---RVVDEEVRQLARDLWDTVRAARGLGLAAPQIGVLRRIIVVA 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+Y+ P L ++NP++ + S R + EGCLS+ G+ V R +
Sbjct: 63 IPPDYVEEGD----------PGVELTLINPEIVRASGRQ-VGLEGCLSIPGWYGEVPRSM 111
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V LD DG+ ++V +G AR+LQHE DHL+G L+VD++
Sbjct: 112 HVTVKALDLDGREVRVKGSGLLARVLQHEIDHLEGILFVDRI 153
>gi|422316180|ref|ZP_16397580.1| peptide deformylase [Fusobacterium periodonticum D10]
gi|404591426|gb|EKA93572.1| peptide deformylase [Fusobacterium periodonticum D10]
Length = 174
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + GD VL + A+EV+ EI E + +DDMV+ M G+GLAAPQ+GV R+ V
Sbjct: 4 EIRKYGDDVLKQIAKEVELSEINDE-FRKFLDDMVETMYETDGIGLAAPQVGVSKRVFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED I I+NP ++ ++ T F EGCLSV G VER
Sbjct: 63 EDGSGKIRK------------------IINPVIEPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ +G+ ++ A A ++QHE DHL+G L+V+K+ P R++
Sbjct: 105 KKVMLKYLNENGEAVEEIAEELLAVVVQHENDHLNGILFVEKISPMAKRLI 155
>gi|429211000|ref|ZP_19202166.1| peptide deformylase [Pseudomonas sp. M1]
gi|428158414|gb|EKX04961.1| peptide deformylase [Pseudomonas sp. M1]
Length = 168
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ ++DDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAK---PVEVVDDSVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + K E + F +NP+L+ + + EGCLSV G+ V+R L
Sbjct: 63 LS------EDKSEPRVF----------INPELEPLTQEMGEYQEGCLSVPGFYENVDRPL 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V LDRDG+ + A G A +QHECDHL+G L+VD +
Sbjct: 107 RVRVKALDRDGKAFEEIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|443314108|ref|ZP_21043698.1| peptide deformylase [Leptolyngbya sp. PCC 6406]
gi|442786300|gb|ELR96050.1| peptide deformylase [Leptolyngbya sp. PCC 6406]
Length = 240
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 31/221 (14%)
Query: 40 FSNDVTFSPHRKARTTSAISKAG--WLLG-LGQNKKAKLPEIV----------------Q 80
F +D+ +P +A+ +S W +G LG ++ L E++ Q
Sbjct: 10 FGSDLLGNPEWEAQNPPCLSPGDRCWGVGVLGSEGRSTLGEMIVFLGGPDFVSQLRSVLQ 69
Query: 81 AGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK 140
GD L + AR P + ++ +Q +IDD++ GVG+AAPQ+GVP R++++
Sbjct: 70 VGDARLKQVAR---PVTVWNQALQTLIDDLIFTAEKTNGVGIAAPQVGVPQRLVIVA--- 123
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
S+ ++ + ++NP L S+ +EGCLSV +R V RY +IE
Sbjct: 124 ------SRPNLRYPQAPTMEPTALINPCLLAHSEAVVAGWEGCLSVPNHRGNVVRYREIE 177
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V LDR G + + ARI QHE DHL+G L+VD+ P
Sbjct: 178 VEYLDRHGDWQRRVWVDFVARIFQHEYDHLEGYLFVDRADP 218
>gi|72162127|ref|YP_289784.1| peptide deformylase [Thermobifida fusca YX]
gi|71915859|gb|AAZ55761.1| peptide deformylase [Thermobifida fusca YX]
Length = 221
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 27/175 (15%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
+ K+ + G+ VLH R D E G+ + +IDDM + M A GVGLAA Q+GV L
Sbjct: 34 RGKVLRVTVVGEDVLHR--RNADVTEFGTPELHTLIDDMFRTMYVAEGVGLAANQVGVDL 91
Query: 132 RIIVLE----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKK---KSDRTALFFEGCL 184
R+ V + D ++ + ++NP L+ + + + EGCL
Sbjct: 92 RVFVYDCPDDDGVRHVGH------------------VINPVLETWGAEEEGLVVENEGCL 133
Query: 185 SVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
SV G A + R VTG DRDG P+ V+ +G+ AR LQHE DH G LY+D++
Sbjct: 134 SVPGPHAELARAPYARVTGFDRDGNPVTVEGSGYFARCLQHETDHTLGRLYIDRL 188
>gi|414078958|ref|YP_006998276.1| peptide deformylase [Anabaena sp. 90]
gi|413972374|gb|AFW96463.1| peptide deformylase [Anabaena sp. 90]
Length = 178
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 11/166 (6%)
Query: 74 KLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRI 133
+L I++ G+P+L + A V+ I E+IQN+ID+++ + A GVG+AAPQI R+
Sbjct: 3 ELAPIIKLGNPILRQKAAAVE--NIQDEKIQNLIDELITSVAQANGVGIAAPQIAASYRL 60
Query: 134 IVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
++ ++ Y E+ ++NP++ S +EGCLSV G R +V
Sbjct: 61 FIVA-SRPNARYPHAPEMPP--------TAMINPRIIAHSSEMVKGWEGCLSVPGIRGLV 111
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
RY IEV DR G K + T + ARI QHE DHL+G +++D++
Sbjct: 112 PRYQTIEVEYTDRYGNLQKQELTDFVARIFQHEYDHLEGLVFLDRV 157
>gi|312898702|ref|ZP_07758092.1| peptide deformylase [Megasphaera micronuciformis F0359]
gi|310620621|gb|EFQ04191.1| peptide deformylase [Megasphaera micronuciformis F0359]
Length = 176
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 22/163 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+ G PVL + A P + ++R++ ++DDM + M SA GVGLAAPQ+ L+I+VL+
Sbjct: 28 IVKDGAPVLKKTAA---PVKTITKRVKRLLDDMAETMYSAEGVGLAAPQVNESLQIVVLD 84
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D L+ ++NP++ S+ T EGCLSV G V RY
Sbjct: 85 DGN-------------------GLIELINPEILDVSEETEYGPEGCLSVPGIYGDVSRYT 125
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I+V +R G+ + + G+ ARI QHE DHL G L+ +K V
Sbjct: 126 KIKVQAKNRFGKTVIYEPEGFLARIFQHEMDHLKGHLFTEKAV 168
>gi|407772949|ref|ZP_11120251.1| peptide deformylase [Thalassospira profundimaris WP0211]
gi|407284902|gb|EKF10418.1| peptide deformylase [Thalassospira profundimaris WP0211]
Length = 172
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 99/165 (60%), Gaps = 17/165 (10%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L EI+ DP L +E +P E ++ I+ +++DM++ M +APG+GLAAPQIGV R++
Sbjct: 3 LREILIVPDPRLK---KECEPVEEVNDEIKTLLNDMLETMYAAPGIGLAAPQIGVMKRVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ + D+ + L ++NP++ +S+ T+++ EGCLS+ A VE
Sbjct: 60 VMDVSD--------------DKDKPEPLKLINPEIIWESEETSIYQEGCLSIPEQYADVE 105
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R ++ + +D +G+ +++A G A +QHE DHLDG L+ D +
Sbjct: 106 RPAEVGMRYMDENGETHEIEADGLLATCIQHEIDHLDGVLFTDYL 150
>gi|387891272|ref|YP_006321569.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|423689107|ref|ZP_17663627.1| peptide deformylase [Pseudomonas fluorescens SS101]
gi|387159897|gb|AFJ55096.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|387999206|gb|EIK60535.1| peptide deformylase [Pseudomonas fluorescens SS101]
Length = 168
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + ++++ ++DDM + M APG+GLAA Q+ V LR++V++ + + + E + +
Sbjct: 20 PVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVVMDLS------EDRSEPRVY 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + ++ + EGCLSV + VER L +++ LDRDG+P ++
Sbjct: 74 ----------INPEFEPLTEEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGKPFELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
Length = 168
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 22/152 (14%)
Query: 88 EPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQS 147
+P VD G I+ ++DDM + M APG+GLAA Q+ V R++V++ ++
Sbjct: 19 KPVAMVDDG------IRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE------- 65
Query: 148 KEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRD 207
DR + ++ +NP+++K +D + EGCLSV G+ V+R + V LDRD
Sbjct: 66 -------DRS--EPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRD 116
Query: 208 GQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 117 GKPYELVAEGLLATCIQHECDHLNGKLFVDYL 148
>gi|323526493|ref|YP_004228646.1| peptide deformylase [Burkholderia sp. CCGE1001]
gi|323383495|gb|ADX55586.1| peptide deformylase [Burkholderia sp. CCGE1001]
Length = 177
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A VD + + +I DM + M A G GLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRIADPVD--HFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ S E D P +++NP + S +EGCLSV G R V R+
Sbjct: 62 ------GFGSNERYP--DAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFS 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I+ G D+ G+PI A G+ AR++QHECDHL G LY
Sbjct: 114 MIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|398869699|ref|ZP_10625057.1| peptide deformylase [Pseudomonas sp. GM74]
gi|398210548|gb|EJM97192.1| peptide deformylase [Pseudomonas sp. GM74]
Length = 168
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFEPLTDEMGQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++V LDRDGQP ++ A A +QHECDHL+G L+VD +
Sbjct: 107 RVKVKALDRDGQPYELIAEDLLAVCIQHECDHLNGKLFVDYL 148
>gi|412341587|ref|YP_006970342.1| peptide deformylase [Bordetella bronchiseptica 253]
gi|408771421|emb|CCJ56222.1| peptide deformylase [Bordetella bronchiseptica 253]
Length = 176
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + ++ +IDDM + M A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RFDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + P +L NP ++ SD +EGCLSV G R +V RY
Sbjct: 62 ------GFERNDRYPDAPAVPRTIL--CNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I +G D GQ I+ +A G+ AR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPVGQRIEREAEGFHARVVQHECDHLIGRLY 151
>gi|58580698|ref|YP_199714.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|58425292|gb|AAW74329.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 212
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A +V +GS + ++ DM + M +A GVGLAAPQI V L+++V
Sbjct: 45 DIIRMGDKRLLRVAPQVT--NLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVF 102
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E P L + N +++ SD +EGCLS+ G RAV+ RY
Sbjct: 103 -------GFEASERYPEAPAVP--LTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRY 153
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
I G DG PI+ +A G+ AR++QHE DHL G LY + +EN D
Sbjct: 154 RYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSR--------IENFD 200
>gi|297195782|ref|ZP_06913180.1| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486]
gi|297152947|gb|EDY66111.2| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486]
Length = 190
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 90/159 (56%), Gaps = 17/159 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVLH+P V + G + + +++D+ M +A GVGLAA Q+GV R+ V +
Sbjct: 21 DPVLHKPCETVT--DFGPD-LGRLVEDLFATMYAAQGVGLAANQVGVGSRVFVYD----- 72
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
E+++ L ++NP+L + T EGCLS+ G A ER+ V
Sbjct: 73 --CPDDEDVR-------HLGHVVNPRLVEADGVTVRGPEGCLSLPGLEAGTERFDRAVVE 123
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
G+ +G+P++V+ TG+ AR LQHECDHL+G +Y D++ P
Sbjct: 124 GVTWEGEPVRVEGTGFFARCLQHECDHLEGLVYADRLTP 162
>gi|431930628|ref|YP_007243674.1| peptide deformylase [Thioflavicoccus mobilis 8321]
gi|431828931|gb|AGA90044.1| peptide deformylase [Thioflavicoccus mobilis 8321]
Length = 178
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 18/150 (12%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLL 162
++ I+DDM++ M APG+GLAA Q+G+P RI+V++ ++E + L
Sbjct: 28 VRQIVDDMLETMYDAPGIGLAAIQVGIPQRIVVIDVSEEKNAP----------------L 71
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
++NP++ KS A EGCLSV G+ V R + LDRDG+P +++A G A
Sbjct: 72 CLINPQILAKSGE-AEMEEGCLSVPGFLEPVTRADWVRAAALDRDGKPFEIEAEGLLATC 130
Query: 223 LQHECDHLDGTLYVDKMVP-KTFRIVENLD 251
+QHE DHLDG L+VD + K +RI + L+
Sbjct: 131 IQHEIDHLDGKLFVDYISSLKRYRIRKKLE 160
>gi|307155367|ref|YP_003890751.1| peptide deformylase [Cyanothece sp. PCC 7822]
gi|306985595|gb|ADN17476.1| peptide deformylase [Cyanothece sp. PCC 7822]
Length = 175
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI Q G+P+L + A+ V+ +I IQ +ID ++ SA GVG+AAPQ+ R+ ++
Sbjct: 6 EIAQLGNPILRQNAQPVE--DITDTAIQQLIDSLIATAASANGVGIAAPQVSQSYRVFIV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ Y + E+ ++NPK+ S +EGCLSV G R +V RY
Sbjct: 64 A-SRPSPRYPNAPEMVP--------TAMINPKIIAYSAERVKGWEGCLSVPGVRGLVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I V LDR G + + T + ARI QHE DHLDG ++VD++
Sbjct: 115 QAITVEYLDRQGNLQRQEFTDFVARIFQHELDHLDGMVFVDRL 157
>gi|115352107|ref|YP_773946.1| peptide deformylase [Burkholderia ambifaria AMMD]
gi|115282095|gb|ABI87612.1| peptide deformylase [Burkholderia ambifaria AMMD]
Length = 177
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L E A+ V + + + I+ DM + M A G GLAAPQIG+ L++I+
Sbjct: 4 EILKMGDPRLLEVAKPV--AQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLIIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S D P +++NPKL+ +EGCLSV G R VV RY
Sbjct: 62 -------GFGSNNRYP--DAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ +G D+ G I A G+ AR++QHE DHL G LY
Sbjct: 113 AKVRYSGYDQFGAKIDRVAEGFHARVVQHEYDHLIGKLY 151
>gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
Length = 200
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 19/179 (10%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL- 136
IVQ P L A+ V E E ++ + DM++ M +APGVGLAAPQIGVPLR++V+
Sbjct: 6 IVQFPVPSLKSRAKPV--SEFNDE-LRRLALDMIETMHAAPGVGLAAPQIGVPLRVVVIA 62
Query: 137 ------EDTKEYISYQSKEEIKAFDRRPFDL--------LMILNPKLKKKSDRTALFFEG 182
E+ + ++ + E +A P L+++NP++ + ++ + EG
Sbjct: 63 GRVTLDEEQRAALAQEHGEAGEAAPSPPSPPSEEELAPSLVLINPEIVE-AEGQQVDEEG 121
Query: 183 CLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
CLSV Y V+R+ I V D GQP+ A + AR++QHE DHLDGTL++D++ P
Sbjct: 122 CLSVREYATNVKRFARIRVKAQDLSGQPLDFVAEDFFARVIQHELDHLDGTLFIDRISP 180
>gi|86604999|ref|YP_473762.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
gi|86553541|gb|ABC98499.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
Length = 175
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 11/159 (6%)
Query: 80 QAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
Q GDP+L + A V E G+ +QN+I++M+ ++ A GVGLAAPQ+G PL++I++
Sbjct: 7 QLGDPILTQVAEPV--AEFGTPALQNLIEEMLATLKEAQGVGLAAPQVGFPLQVIIVA-- 62
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
S+ + D + L+++NP+ S+ L +EGCLSV R +V R ++
Sbjct: 63 -------SRPNPRYPDAPQMEPLVMVNPRPLACSEEQVLGWEGCLSVPNCRGLVARSREV 115
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
EV +G +V + ARI QHE DHL G L++D+
Sbjct: 116 EVEYHTPEGSRQRVVWRDFPARIFQHEYDHLRGRLFLDR 154
>gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804]
gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii]
Length = 170
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 89/165 (53%), Gaps = 19/165 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I+ DP LH+ A+ P + +RI+ ++ DM M APGVGLAA Q+ V R++
Sbjct: 3 LLSILHYPDPRLHKKAK---PVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ ++E +L +++NP++ KSD + EGCLSV G VE
Sbjct: 60 VIDVSEE----------------GNELRVLINPEITWKSDERQTYEEGCLSVPGIYDEVE 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I LD DG P + +A G A +QHE DHLDG ++V+ +
Sbjct: 104 RAARIRYRALDADGNPYEAEAEGLLAVCVQHELDHLDGKVFVEYL 148
>gi|424793181|ref|ZP_18219325.1| Peptide deformylase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796755|gb|EKU25209.1| Peptide deformylase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 170
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A +VDP ++ + Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKALQVDPADVTAPAFQRLLDDMFETMYEAPGIGLAASQVDVHQR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ ++E + Q + +NP++ ++ D + EGCLSV G A
Sbjct: 61 FMVIDVSEEKDAPQ----------------VFINPQIVQR-DGEQVHQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR G+P ++ A G A +QHE DHLDG L+VD + P
Sbjct: 104 VTRAETIVVRYLDRHGRPQELSADGLLAVCVQHEMDHLDGKLFVDYLSP 152
>gi|398920310|ref|ZP_10659227.1| peptide deformylase [Pseudomonas sp. GM49]
gi|398168319|gb|EJM56340.1| peptide deformylase [Pseudomonas sp. GM49]
Length = 168
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RTEPRVF----------INPEFEPLTDEMGQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++V LDRDGQP ++ A A +QHECDHL+G L+VD +
Sbjct: 107 RVKVKALDRDGQPYELIAEDLLAVCIQHECDHLNGKLFVDYL 148
>gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 171
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ +IDDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG P + A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|226184096|dbj|BAH32200.1| peptide deformylase [Rhodococcus erythropolis PR4]
Length = 199
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 95/185 (51%), Gaps = 20/185 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH + +P I +I DM + M +A GVGLAA Q+GV LR+ V
Sbjct: 10 GDPVLH---KATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVSLRVFV------ 60
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVERY 196
Y + ++ +RR +++NP L+ + FEGCLSV G + R
Sbjct: 61 ---YDCPGDDRSSERR---RGVVVNPVLETSEIPQTMPDPEEDFEGCLSVPGEQFPTGRA 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+VTG D DG PI+V+ TG+ AR+LQHE HLDG LY D ++ + R + +
Sbjct: 115 DWAKVTGTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVLIGRNARAAKKIIKRSGW 174
Query: 257 GCPKL 261
G P L
Sbjct: 175 GKPGL 179
>gi|334130481|ref|ZP_08504278.1| Peptide deformylase [Methyloversatilis universalis FAM5]
gi|333444590|gb|EGK72539.1| Peptide deformylase [Methyloversatilis universalis FAM5]
Length = 176
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L +R VD + + ++ D++ M +A G GLAAPQIGV LR+++
Sbjct: 4 DILRMGDPRLLRVSRPVD--RFNTVELDALVRDLIDTMEAADGAGLAAPQIGVDLRVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y + PF +L +NP L+ + +EGCLSV G R VV R+
Sbjct: 62 GGLPP-ARYPDAPVV------PFTVL--VNPVLEPMGNEMEDGWEGCLSVPGLRGVVPRH 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D+ G PI G+ AR++QHECDHLDG LY
Sbjct: 113 QRLHYRGFDQHGVPIDRVVQGFHARVVQHECDHLDGVLY 151
>gi|427710701|ref|YP_007053078.1| peptide deformylase [Nostoc sp. PCC 7107]
gi|427363206|gb|AFY45928.1| Peptide deformylase [Nostoc sp. PCC 7107]
Length = 193
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A L IVQ GDP++ + A VD I E+IQ +IDD++ + A GVG+AAPQ+ R
Sbjct: 18 ADLLPIVQLGDPIIRQKAIWVD--NIHDEKIQKLIDDLITTVSQANGVGIAAPQVAKQQR 75
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ ++ S+ + + + ++NP++ S +EGCL + G R
Sbjct: 76 LFIVA---------SRPNPRYPNAPIMEPTAMINPRIVSHSPEIVKGWEGCLCIPGIRGF 126
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V RY IEV DR GQ K + + ARI QHE DHLDG +++D++
Sbjct: 127 VPRYQTIEVEYYDRYGQLQKQKFSDFVARIFQHEYDHLDGIVFIDRV 173
>gi|398384447|ref|ZP_10542477.1| peptide deformylase [Sphingobium sp. AP49]
gi|397722606|gb|EJK83142.1| peptide deformylase [Sphingobium sp. AP49]
Length = 176
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++A DP L + P E + +Q +IDDM M APG+GLAA Q+GVP R++V+
Sbjct: 6 ILEAPDPRLRTIST---PVEAIDDDLQRLIDDMFDTMYDAPGIGLAAIQVGVPKRVLVM- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D +E +S+EE ++P ++ +NP++ K S+ +++ EGCLSV A VER
Sbjct: 62 DLQEP---ESEEEDAPPVKKP---MVFINPEILKGSEELSVYNEGCLSVPDQFAEVERPA 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I + +DRDG+ + G A LQHE DHL+G L++D +
Sbjct: 116 AIRASWMDRDGRIHEEQLEGLLATCLQHEIDHLEGVLFIDHL 157
>gi|297560923|ref|YP_003679897.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296845371|gb|ADH67391.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 219
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
+ + ++ I G+ VLH +V P GS + +IDDM M +A GVGLA Q+G
Sbjct: 25 EAARGRVRRITVTGEEVLHRRGVDVAPQMWGSAELAGLIDDMFVTMYAAEGVGLAGSQVG 84
Query: 129 VPLRIIVLE----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKS--DRTALFFEG 182
V LR+ V + D ++ + ++NP L ++ D + EG
Sbjct: 85 VDLRVFVYDCPDDDGVRHVGH------------------VVNPVLDERDPDDAVVVESEG 126
Query: 183 CLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
CLSV G A + R V G+DRDG P+ V +G+ AR LQHE DH G LYVD++ +
Sbjct: 127 CLSVPGPHADLGRAEHATVRGVDRDGNPVVVSGSGYFARCLQHETDHTLGRLYVDRLSAR 186
>gi|398853371|ref|ZP_10609974.1| peptide deformylase [Pseudomonas sp. GM80]
gi|398239902|gb|EJN25600.1| peptide deformylase [Pseudomonas sp. GM80]
Length = 168
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 93/163 (57%), Gaps = 19/163 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V+
Sbjct: 5 DILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVM 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + + + E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 62 DLS------EDRTEPRVF----------INPEFESLTEEMEQYQEGCLSVPGFYENVDRP 105
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 106 QKVKIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1]
Length = 174
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 17/163 (10%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
+ +V DP+L E ++ V+ ++ IQ + DDM++ M A G+GLAA Q+GVPLR++
Sbjct: 1 MKSLVTLPDPILREVSKPVEQIDLA---IQKLADDMLETMYHAQGIGLAAIQVGVPLRML 57
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ A + P + L+++NP++ SD ++ EGCLS+ Y A VE
Sbjct: 58 VID--------------IAENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVE 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
R + V DR+G+ +++A A LQHE DHL+G L++D
Sbjct: 104 RPKRLRVRYSDREGKQTEIEADDLLATCLQHEIDHLNGCLFID 146
>gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099]
gi|23396550|sp|Q98D52.1|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti
MAFF303099]
Length = 176
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E ++ + DDM+ M APG+GLAA QIG PLR++V++ KE
Sbjct: 11 DPILRQVSK---PVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D P + I NP++ + ++ +++ EGCLS+ Y A VER + V
Sbjct: 67 ------------DETPAPHVFI-NPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LDRDG+ +++A G A LQHE DHL+G L++D +
Sbjct: 114 YLDRDGKLQEMEAEGLMATCLQHEIDHLNGVLFIDHI 150
>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 167
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ +IDDM + M APG+GLAA Q+ V RI+V++
Sbjct: 5 ILEFPDPRLRTIAK---PVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 62 LSED------KSEPRVF----------INPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQ 105
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG P + A G A +QHECDHL+G L+VD +
Sbjct: 106 KVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYL 147
>gi|406937229|gb|EKD70750.1| Peptide deformylase [uncultured bacterium]
Length = 178
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V+ G+ L P+ V + S ++ ++ DM M+ GVG+AAPQIGV LR+++
Sbjct: 6 VVKMGNAQLATPSLPVT--DFSSPELKQLLQDMKDTMKEKGGVGIAAPQIGVNLRVMIFG 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
K + Y ++ + PF +L +NP ++ S +EGCLSV G R V R+L
Sbjct: 64 FEKT-VRYPNEALV------PFTIL--INPIIEILSTELIDGWEGCLSVPGLRGRVSRFL 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I+ +G D +G A + ARI+QHECDHLDG L+
Sbjct: 115 KIKYSGFDENGNSFSRTAENFHARIVQHECDHLDGILF 152
>gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2]
gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
gi|386056090|ref|YP_005972612.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|392981429|ref|YP_006480016.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|416866946|ref|ZP_11915972.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|416887710|ref|ZP_11922769.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|418587865|ref|ZP_13151886.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|418591628|ref|ZP_13155524.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|419757390|ref|ZP_14283733.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|420141067|ref|ZP_14648783.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|421153046|ref|ZP_15612608.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|421156964|ref|ZP_15616383.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|421167539|ref|ZP_15625722.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|421183715|ref|ZP_15641164.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|421514625|ref|ZP_15961311.1| peptide deformylase [Pseudomonas aeruginosa PAO579]
gi|424943600|ref|ZP_18359363.1| polypeptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|451983637|ref|ZP_21931913.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|17432949|sp|Q9I7A8.1|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1]
gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58]
gi|334833122|gb|EGM12290.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|334833891|gb|EGM12916.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|346060046|dbj|GAA19929.1| polypeptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|347302396|gb|AEO72510.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|375041377|gb|EHS34078.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|375049687|gb|EHS42178.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|384396189|gb|EIE42609.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|392316934|gb|AFM62314.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|403246194|gb|EJY59934.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|404348353|gb|EJZ74690.1| peptide deformylase [Pseudomonas aeruginosa PAO579]
gi|404524330|gb|EKA34679.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|404534227|gb|EKA43980.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|404539809|gb|EKA49256.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|404551100|gb|EKA59787.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|451758583|emb|CCQ84436.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|453044695|gb|EME92417.1| peptide deformylase [Pseudomonas aeruginosa PA21_ST175]
Length = 168
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ +IDDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG P + A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|452126449|ref|ZP_21939032.1| peptide deformylase [Bordetella holmesii F627]
gi|452129822|ref|ZP_21942395.1| peptide deformylase [Bordetella holmesii H558]
gi|451921544|gb|EMD71689.1| peptide deformylase [Bordetella holmesii F627]
gi|451922682|gb|EMD72826.1| peptide deformylase [Bordetella holmesii H558]
Length = 177
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 25/169 (14%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V + GS ++ +I+DM + M +A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVT--DFGSAALRQLIEDMFETMIAANGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGYR 190
F+R P ++ NP + SD +EGCLSV G R
Sbjct: 62 ---------------GFERNPRYPDAPAVPQTVLCNPVITPLSDEMEDGWEGCLSVPGLR 106
Query: 191 AVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V RY I G D DGQ I +A+ + AR++QHECDHL G LY ++
Sbjct: 107 GRVPRYRHIRYQGSDPDGQRIDREASDFHARVVQHECDHLIGRLYPSRI 155
>gi|56475469|ref|YP_157058.1| peptide deformylase [Aromatoleum aromaticum EbN1]
gi|56311512|emb|CAI06157.1| N-formylmethionyl-tRNA deformylase 2 [Aromatoleum aromaticum EbN1]
Length = 175
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GDP L +PA VD G+ + ++ D+ M + GVGLAAPQIGV L++++
Sbjct: 6 LLRMGDPRLLQPAEPVD--AFGTVELAALVVDLFDTMAAHGGVGLAAPQIGVGLQMVIF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E D P ++LNP + + +EGCLSV G R +V R+
Sbjct: 63 ------GFERSERYP--DAPPVPQTVLLNPVITPLGELVEEGWEGCLSVPGLRGMVPRHS 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D GQ I A G+ AR++QHECDHL G LY
Sbjct: 115 RIRYQGADSQGQTIDRIAEGFHARVVQHECDHLAGVLY 152
>gi|295394412|ref|ZP_06804636.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
gi|294972764|gb|EFG48615.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
Length = 193
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 13/163 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV G+PVLH R+ DP + + ++ DM + + ++ GVGLAAPQIGV +I V
Sbjct: 6 IVVYGEPVLH---RKADPVTEFGDELHTLVADMYETLTASNGVGLAAPQIGVGKQIYV-- 60
Query: 138 DTKEYISYQSKEEIKAFDRRP-FDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y + +E+ RR F +++ K+ + + EGCLSV ++R
Sbjct: 61 -------YDADDEVAGVRRRGVFINPVLVASKVPTTNPDPSEDTEGCLSVPVLDYPLKRA 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ VTG+D + QP+ + GW ARI+QHE DHL GTLYVD++
Sbjct: 114 DKVTVTGVDENNQPVSLSVEGWFARIMQHEFDHLHGTLYVDRL 156
>gi|408787233|ref|ZP_11198964.1| peptide deformylase [Rhizobium lupini HPC(L)]
gi|424909300|ref|ZP_18332677.1| peptide deformylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845331|gb|EJA97853.1| peptide deformylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|408486864|gb|EKJ95187.1| peptide deformylase [Rhizobium lupini HPC(L)]
Length = 170
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E + + DDM++ M APG+GLAA QIGVP R++V++ +E
Sbjct: 11 DPVLRQQSK---PIEKVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRLLVIDVARE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ P ++ +NP++ K SD + + EGCLS+ Y A VER + V
Sbjct: 67 ----------GEEKTP---IVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQ 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ RDG+ V+A G A LQHE DHL+G L++D +
Sbjct: 114 YVGRDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHI 150
>gi|407976014|ref|ZP_11156916.1| peptide deformylase [Nitratireductor indicus C115]
gi|407428515|gb|EKF41197.1| peptide deformylase [Nitratireductor indicus C115]
Length = 176
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 24/174 (13%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L E ++ P E E ++ DDM+ M APG+GLAA Q+G PLR++V++
Sbjct: 11 DPILRETSK---PVERVDEALRKFADDMLDTMYDAPGIGLAAIQVGEPLRMLVVD----- 62
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+S + +E L++LNP++ +SD + EGCLS+ Y A VER + V
Sbjct: 63 VSDKDEEPAP---------LVVLNPEIVARSDARNVHEEGCLSIPDYYADVERPARVTVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFRIVEN 249
+D +G+ V+A G A LQHE DHL+G L++D MV + FR + N
Sbjct: 114 YMDIEGKMQTVEADGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRKLAN 167
>gi|357414805|ref|YP_004926541.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
gi|320012174|gb|ADW07024.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
Length = 169
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 17/159 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
G P LH P +V + G + +++DM M +A GVGLAA QIGVPLR+ V +
Sbjct: 5 GAPALHSPCDDVT--DFGPS-LARLVEDMFATMYAANGVGLAANQIGVPLRVFVYD---- 57
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+E++ L ++NP L + T EGCLS+ G A R+ V
Sbjct: 58 ---CPDDDEVR-------HLGHLVNPVLVEADGDTVRGPEGCLSLPGIEAGTPRFDRAVV 107
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
G G+P+++ TGW AR LQHECDHLDG +Y D++
Sbjct: 108 EGRTVAGEPVRITGTGWFARCLQHECDHLDGRVYTDRLT 146
>gi|410421560|ref|YP_006902009.1| peptide deformylase [Bordetella bronchiseptica MO149]
gi|427825399|ref|ZP_18992461.1| peptide deformylase [Bordetella bronchiseptica Bbr77]
gi|408448855|emb|CCJ60540.1| peptide deformylase [Bordetella bronchiseptica MO149]
gi|410590664|emb|CCN05756.1| peptide deformylase [Bordetella bronchiseptica Bbr77]
Length = 176
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + ++ +IDDM + M A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + P +L NP ++ SD +EGCLSV G R +V RY
Sbjct: 62 ------GFERNDRYPDAPAVPRTIL--CNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I +G D GQ I+ +A G+ AR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPVGQRIEREAEGFHARVVQHECDHLIGRLY 151
>gi|407367489|ref|ZP_11114021.1| peptide deformylase [Pseudomonas mandelii JR-1]
Length = 168
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ + + + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLS------EDRSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R ++V LDRDG+P ++
Sbjct: 74 ----------INPEFEPLTDEMEQYQEGCLSVPGFYENVDRPQKVKVKALDRDGKPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|406983338|gb|EKE04552.1| hypothetical protein ACD_20C00051G0018 [uncultured bacterium]
Length = 194
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 20/163 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I+Q GD +L P +EV S +IQ +IDD++ M S GVGLAAPQ+G R+ V+
Sbjct: 5 KIIQYGDKILRAPTKEVHKI---SSKIQKLIDDLMDTMYSQNGVGLAAPQLGESYRVFVI 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + P + ++ +NPK+ KKS + +EGCLS V RY
Sbjct: 62 DTST--------------GDEPLNPIVFVNPKIIKKSG-AIISYEGCLSFPEAYTNVRRY 106
Query: 197 LDIEVTGLDRDGQPIKVDATGWQ--ARILQHECDHLDGTLYVD 237
D+ + D G+P ++A AR +QHE DHLDG L++D
Sbjct: 107 TDVVIRAKDDKGRPFTIEAKDGSLLARAIQHEMDHLDGILFID 149
>gi|299143971|ref|ZP_07037051.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518456|gb|EFI42195.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 158
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 22/155 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + +REV + +R++ +I+DM + M A GVGLAAPQ+GV R+I ++D E+
Sbjct: 11 DPVLRKISREVVKFD---DRLKTLIEDMYETMDKAEGVGLAAPQVGVLRRVITVDDRTEH 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++NP++ +S T L +EGCLS+ + V+R+ +I+V
Sbjct: 68 ------------------RFALINPEIIFESG-TQLGYEGCLSLPNKQGKVKRFNEIKVK 108
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
LD +G+ +++A + ARILQHE DHL+G LY D
Sbjct: 109 YLDENGEKKEIEAKEYLARILQHEIDHLNGILYSD 143
>gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacterium jeikeium K411]
gi|260578459|ref|ZP_05846373.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
gi|68262925|emb|CAI36413.1| polypeptide deformylase [Corynebacterium jeikeium K411]
gi|258603481|gb|EEW16744.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734]
Length = 193
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 89/173 (51%), Gaps = 20/173 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV GDPVLH P +VDP EI + +I DM + + +A GVGLAA Q+GV R V
Sbjct: 6 IVICGDPVLHNPTTKVDPSEI--PDLAPLIADMYETLSAANGVGLAANQVGVNKRFFV-- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
Y + + RR ++NP L+ + EGCLSV GY
Sbjct: 62 -------YDCPDTERGEMRRG----CVINPVLETSEIPETMPDEEEDEEGCLSVPGYSFP 110
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
R VTGLD +G+ + V+ TG+ AR LQHE HLDG LY+D ++ + R
Sbjct: 111 TGRADWARVTGLDENGEEVTVEGTGFFARCLQHEVGHLDGFLYIDTLIGRWKR 163
>gi|294628122|ref|ZP_06706682.1| peptide deformylase [Streptomyces sp. e14]
gi|292831455|gb|EFF89804.1| peptide deformylase [Streptomyces sp. e14]
Length = 213
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query: 47 SPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNI 106
+P R +R + A G + ++ + GD L P REV E G E + +
Sbjct: 10 APARPSRVHQDRTLAAMRNGSIPGARGRVRPLTLLGDAALAAPCREVT--EFGPE-LAAL 66
Query: 107 IDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILN 166
++D+ M +A GVGLAA Q+G+ LR+ V + + E+++ L ++N
Sbjct: 67 VEDLFATMYAARGVGLAANQVGLDLRVFVYDCPDD-------EDVR-------HLGHLVN 112
Query: 167 PKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHE 226
P+L EGCLS+ G A VER+ V G G+P+ V+ TG+ AR LQHE
Sbjct: 113 PRLVAADGLLFRGPEGCLSLPGLEAGVERHDHAVVEGFTVAGEPVTVEGTGFFARCLQHE 172
Query: 227 CDHLDGTLYVDKMV 240
CDHLDG LYVD +
Sbjct: 173 CDHLDGRLYVDHLT 186
>gi|220912934|ref|YP_002488243.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
gi|219859812|gb|ACL40154.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
Length = 190
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 22/170 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH A EV E+ + ++ +I DM + +A GVGLAAPQ+GV RI V +
Sbjct: 6 ITIWGEPVLHRRASEV---EVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFVYK 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNP-----KLKKKSDRTALFFEGCLSVNGYRAV 192
Y + ++ A +++NP K+ + EGCLS G +
Sbjct: 63 -------YANDDDAPASG-------VVVNPVLTLSKISGAAPDPDEEEEGCLSFPGDQYP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
++R V G D +GQP+K +ATGW AR++QHE DHLDG LYV++++ +
Sbjct: 109 LKRAEWARVEGFDGNGQPVKFEATGWFARVIQHEYDHLDGKLYVNRLMDR 158
>gi|187924438|ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirmans PsJN]
gi|187715632|gb|ACD16856.1| peptide deformylase [Burkholderia phytofirmans PsJN]
Length = 177
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A VD + + ++ DM + M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIADPVD--HFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ E D P +++NP + S +EGCLSV G R V R+
Sbjct: 62 -------GFGHNERYP--DAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRF 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I+ G D+ G+PI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|49081366|gb|AAT50122.1| PA0019, partial [synthetic construct]
Length = 169
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ +IDDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG P + A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|452126569|ref|ZP_21939152.1| peptide deformylase [Bordetella holmesii F627]
gi|452129945|ref|ZP_21942518.1| peptide deformylase [Bordetella holmesii H558]
gi|451921664|gb|EMD71809.1| peptide deformylase [Bordetella holmesii F627]
gi|451922805|gb|EMD72949.1| peptide deformylase [Bordetella holmesii H558]
Length = 170
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 21/179 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP LH+ A+ P + +R++ ++ DM + M APGVGLAA Q+ V R
Sbjct: 2 ALLP-ILRYPDPRLHKVAK---PVAVVDDRVRQLVKDMAETMYDAPGVGLAATQVDVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
IIV++ +S K DL +++NP++ KS+ ++ EGCLSV G
Sbjct: 58 IIVID-----VSEDGK-----------DLCVLINPEITWKSEELQVYEEGCLSVPGVYDE 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENL 250
V+R I LD GQP + +A G A +QHE DHLDG ++V+ + V K RI L
Sbjct: 102 VKRAARIRCKALDAQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRL 160
>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422659065|ref|ZP_16721494.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|32363153|sp|Q88B43.1|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 168
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 22/154 (14%)
Query: 86 LHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISY 145
L +P VD G I+ ++DDM + M APG+GLAA Q+ V R++V++ +++ +
Sbjct: 17 LAKPVAMVDDG------IRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSA- 69
Query: 146 QSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLD 205
P ++ +NP+++K +D + EGCLSV G+ V+R + V LD
Sbjct: 70 ------------P---MVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALD 114
Query: 206 RDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
RDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 115 RDGKPYELVAEGLLAICIQHECDHLNGKLFVDYL 148
>gi|397731559|ref|ZP_10498308.1| peptide deformylase [Rhodococcus sp. JVH1]
gi|396932847|gb|EJJ00008.1| peptide deformylase [Rhodococcus sp. JVH1]
Length = 233
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 94/188 (50%), Gaps = 24/188 (12%)
Query: 82 GDPVLHEPAREVD--PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
GDPVLHEP V P E+ II DM M +A GVGLAA Q+G+PLR+ V
Sbjct: 47 GDPVLHEPTEAVSQSPAELAE-----IIADMYDTMDAANGVGLAANQVGLPLRLFV---- 97
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF------FEGCLSVNGYRAVV 193
Y + KA RR ++NP L+ S+R EGCLSV G +
Sbjct: 98 --YDCPDVDGDGKALRRRG----CVVNPVLET-SERPETMPDPDDDVEGCLSVPGEQFPT 150
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLP 253
R +VTG D DG ++++ G+ AR+LQHE HLDG LYVD +V + R +
Sbjct: 151 GRAEWAKVTGTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 210
Query: 254 LAEGCPKL 261
G P L
Sbjct: 211 AGWGVPGL 218
>gi|331699449|ref|YP_004335688.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
gi|326954138|gb|AEA27835.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
Length = 190
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 21/185 (11%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P R V + + ++ ++DDM + M +A GVGLAA QIGV LR+ V
Sbjct: 10 GDPVLHAPTRPVVEFD---DALRELVDDMFETMAAAHGVGLAANQIGVDLRVFV------ 60
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVERY 196
Y +E+ R +++NP L+ + EGCLSV G + R
Sbjct: 61 ---YDCPDEVTKTMARG----VVVNPVLETSEIPETMPDPEEDEEGCLSVPGEQFPTGRA 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
VTG+D DGQP++ + G+ AR QHE DHLDG LYV+++ + R + +
Sbjct: 114 DWARVTGVDVDGQPVEAEGRGFLARCFQHEVDHLDGHLYVERLTGRHLRASKKMLKAAGW 173
Query: 257 GCPKL 261
G P L
Sbjct: 174 GVPGL 178
>gi|358465683|ref|ZP_09175588.1| peptide deformylase [Fusobacterium sp. oral taxon 370 str. F0437]
gi|357069814|gb|EHI79687.1| peptide deformylase [Fusobacterium sp. oral taxon 370 str. F0437]
Length = 174
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + GD VL + A+EV+ EI E + +DDMV+ M G+GLAAPQ+GV R+ V
Sbjct: 4 EIRKYGDDVLKQIAKEVELSEINDE-FRKFLDDMVETMYETDGIGLAAPQVGVSKRVFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D +I ++NP ++ ++ T F EGCLSV G VER
Sbjct: 63 DDGNGHIR------------------KVINPIIEPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ +G+ ++ A A ++QHE DHL+G L+V+K+ P R++
Sbjct: 105 KKVMLKYLNENGEAVEEIAEDLLAVVVQHENDHLNGILFVEKISPMAKRLI 155
>gi|254477024|ref|ZP_05090410.1| peptide deformylase [Ruegeria sp. R11]
gi|214031267|gb|EEB72102.1| peptide deformylase [Ruegeria sp. R11]
Length = 189
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 13/142 (9%)
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
++ ++ + DDM++ M +APGVGLAAPQIGV R+IVL+ KE EE RP
Sbjct: 41 TDAMRTLADDMLETMYAAPGVGLAAPQIGVLDRLIVLDCAKE------DEE----SPRP- 89
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
L++ NPK+ SD T ++ EGCLS+ A V R +EV ++RDG + G
Sbjct: 90 --LVMFNPKIVSASDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMNRDGNAARETFDGLW 147
Query: 220 ARILQHECDHLDGTLYVDKMVP 241
A +QHE DHLDG L++D + P
Sbjct: 148 ATCVQHEIDHLDGKLFIDYLKP 169
>gi|407981976|ref|ZP_11162663.1| peptide deformylase [Mycobacterium hassiacum DSM 44199]
gi|407376444|gb|EKF25373.1| peptide deformylase [Mycobacterium hassiacum DSM 44199]
Length = 197
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 19/166 (11%)
Query: 82 GDPVLHEPAREVDPGEIGS--ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
GDPVLH P V E GS + I+ +I+DM + M +A GVGLAA QIGV RI V
Sbjct: 10 GDPVLHTPTEPVTLNEDGSVPDDIRELINDMFETMDAANGVGLAANQIGVSKRIFV---- 65
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVE 194
Y E+ + RR ++NP L+ + EGCLSV G +
Sbjct: 66 -----YDCAEDRGSASRR---RGAVINPVLETSEIPETMPDPDADEEGCLSVPGEQFPTG 117
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
R VTG+D +G+P+ ++ TG AR+LQHE HLDG LY+D+++
Sbjct: 118 RAKWARVTGVDEEGKPVTLEGTGLFARMLQHETGHLDGYLYLDRLI 163
>gi|421849493|ref|ZP_16282472.1| peptide deformylase [Acetobacter pasteurianus NBRC 101655]
gi|371459680|dbj|GAB27675.1| peptide deformylase [Acetobacter pasteurianus NBRC 101655]
Length = 174
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 78 IVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
I + G PVL +PA+EV DP + IQ +I DM + + + GVGLAAPQ+ V R+ +
Sbjct: 6 IARMGHPVLRQPAQEVPDPT---APDIQRLIADMRETLEESGGVGLAAPQVFVSQRLFI- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y ++ E + D P + ++NP LK D L EGCLS+ R V RY
Sbjct: 62 -----YSVPLARSEGE--DDPPLPVQALINPVLKPVDDEKLLRTEGCLSLPELRGEVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D GQ ++ ATG++A ++QHE DHLDG LY +M
Sbjct: 115 KRIWYAGFDPHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMT 158
>gi|311104085|ref|YP_003976938.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
gi|310758774|gb|ADP14223.1| peptide deformylase 1 [Achromobacter xylosoxidans A8]
Length = 177
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + + +IDDM + M +A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E P +L NP + SD +EGCLSV G R +V RY
Sbjct: 62 ------GFDRNERYPDAPAVPQTIL--CNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I +G D GQ I+ +A G+ AR++QHECDHL G LY ++
Sbjct: 114 RIRYSGRDPYGQLIEREADGFHARVVQHECDHLIGRLYPSRI 155
>gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118]
gi|346726574|ref|YP_004853243.1| peptide deformylase [Xanthomonas axonopodis pv. citrumelo F1]
gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118]
gi|346651321|gb|AEO43945.1| peptide deformylase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 170
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S+ Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ + E K + F +NP++ K L+ EGCLSV G A
Sbjct: 61 FMVIDISDE------KNLPQVF----------VNPEIVSKQGEQ-LYQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQ ++ A G A +QHE DHLDG L+VD + P
Sbjct: 104 VSRADAITVRYLDRQGQAQELQADGLLAVCIQHEMDHLDGKLFVDYLSP 152
>gi|411119899|ref|ZP_11392275.1| peptide deformylase [Oscillatoriales cyanobacterium JSC-12]
gi|410710055|gb|EKQ67566.1| peptide deformylase [Oscillatoriales cyanobacterium JSC-12]
Length = 179
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L P++ V ++ S+ +Q +ID ++ ++ + GVG+AAPQ+G +R+ ++
Sbjct: 4 QILELGDPELRLPSQPV--ADVMSDCVQRLIDRLLVAVKESNGVGIAAPQMGERVRLFIV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
S+ + D + ++NP++ S+ TA +EGCLSV G R +V RY
Sbjct: 62 A---------SRPNPRYPDAPKMEPTPMINPRIVSHSNETAKGWEGCLSVPGLRGLVSRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
IEV + RDG + T + ARI QHE DHLDG +++D++
Sbjct: 113 TAIEVEYIGRDGILHRQTLTDFVARIFQHELDHLDGKVFLDRV 155
>gi|260219440|emb|CBA26285.1| Peptide deformylase 2 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 179
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L A+ V E S+ + ++ DM+ MR+A G GLAAPQIGV L++++
Sbjct: 5 DILKMGDPRLLRVAQPVT--EFDSDALHLLVTDMLDTMRAANGAGLAAPQIGVDLQLVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ Y + + ++ NP + D +EGCLSV G R VV R+
Sbjct: 63 GGNERNPRYPDRPIVPP--------TVLCNPVITPLGDEEENDWEGCLSVPGLRGVVPRW 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I TG D+ G I G+ AR++QHECDH+ G LY
Sbjct: 115 SRIRYTGFDQYGDAIDRTVDGFHARVVQHECDHVWGKLY 153
>gi|82701784|ref|YP_411350.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
gi|82409849|gb|ABB73958.1| Peptide deformylase [Nitrosospira multiformis ATCC 25196]
Length = 177
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GDP L E AR+V+ + ++ DM M + G GLAAPQIG+ L++++
Sbjct: 6 VLKMGDPRLLEVARKVE--NFSTPEFGALLRDMHDTMEALEGAGLAAPQIGIDLQVVIF- 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
K + Y EE+ P+ +L +NP L ++ +EGCLSV G R +V RY
Sbjct: 63 GVKRNLRYPDAEEV------PYTVL--VNPVLTPLTEYMEQDWEGCLSVPGMRGMVPRYA 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D+ G I G+ AR++QHECDHL G LY
Sbjct: 115 RIRYEGSDQYGNRIDRTVEGFHARVVQHECDHLQGILY 152
>gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2]
gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2]
Length = 175
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + + P E ++++ DM M APG+GLAA Q+G P+R++V++ KE
Sbjct: 11 DPVLRQVSA---PVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP + + SD+ + + EGCLS+ Y A VER ++V
Sbjct: 67 -------------GEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
D DG+P ++A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFK 163
>gi|317121756|ref|YP_004101759.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM
12885]
gi|315591736|gb|ADU51032.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM
12885]
Length = 550
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 22/164 (13%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
LP + A +PVL PA+ V ++ E ++ ++D M M +A G+GLAAPQ+GV RI+
Sbjct: 23 LPIVKGADEPVLRTPAQPV--AKVNRE-VRQLLDRMAATMYAADGIGLAAPQVGVSKRIV 79
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ L+ ++NP++ ++ + T +EGCLS+ A VE
Sbjct: 80 VVDVGD-------------------GLIELINPEIVRRGEETETAYEGCLSLPRLLAEVE 120
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
R ++VT LDR G+ I ++ G AR LQHE DHLDG L D+
Sbjct: 121 RPATVQVTALDRHGRRIWIEGEGLLARCLQHEIDHLDGVLITDR 164
>gi|443629279|ref|ZP_21113610.1| putative Peptide deformylase 1 [Streptomyces viridochromogenes
Tue57]
gi|443337186|gb|ELS51497.1| putative Peptide deformylase 1 [Streptomyces viridochromogenes
Tue57]
Length = 184
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 17/159 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL P EV + G E + +++D+ M +A GVGLAA Q+G LR+ V + +
Sbjct: 20 GDPVLRAPCEEVT--DFGPE-LATLVEDLFATMYAARGVGLAANQVGASLRVFVYDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ L ++NP+L + EGCLS+ G A ERY V
Sbjct: 77 -------EDVR-------HLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
G G+P+ V TG+ AR LQHECDHL GT+Y D++
Sbjct: 123 EGFTMTGEPVTVHGTGFFARCLQHECDHLAGTVYADRVT 161
>gi|429748597|ref|ZP_19281779.1| peptide deformylase [Capnocytophaga sp. oral taxon 332 str. F0381]
gi|429170484|gb|EKY12156.1| peptide deformylase [Capnocytophaga sp. oral taxon 332 str. F0381]
Length = 202
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 14/177 (7%)
Query: 67 LGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQ 126
+ +N LP I+ GDPVL + ++ P ++++I +M M +A GVGLAAPQ
Sbjct: 1 MKKNNTMILP-IIAYGDPVLRKVGTDITPA---YPDLKSLIANMYDTMNNANGVGLAAPQ 56
Query: 127 IGVPLRIIVLEDT----KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEG 182
+G+ +R+ V++ E ++ + ++ + F + + +N K+ +++ + LF EG
Sbjct: 57 VGLAIRLFVVDTAPFADDEDLTAEEQKFLLGFKK------VFINAKITEETGKKWLFNEG 110
Query: 183 CLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
CLS+ G R V R I + LD + P K+ G AR++QHE DH++G L+ DK+
Sbjct: 111 CLSIPGVREDVSRNEQITIEFLDENFNPQKLTLNGLAARVVQHEYDHIEGILFTDKI 167
>gi|374704487|ref|ZP_09711357.1| peptide deformylase [Pseudomonas sp. S9]
Length = 168
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 94/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + ++ +IDDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDDLRQLIDDMFETMYEAPGIGLAATQVNVHKRLVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + ++ + EGCLSV G+ ++R
Sbjct: 63 LSED------RSEPRVF----------INPEFESLTEEMDQYQEGCLSVPGFYENIDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++V LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKVKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|422643832|ref|ZP_16706971.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|422672606|ref|ZP_16731969.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
gi|63253997|gb|AAY35093.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
Length = 168
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 22/152 (14%)
Query: 88 EPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQS 147
+P VD G I+ ++DDM + M APG+GLAA Q+ V R++V++ ++
Sbjct: 19 KPVAMVDDG------IRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE------- 65
Query: 148 KEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRD 207
DR + ++ +NP+++K +D + EGCLSV G+ V+R + V LDRD
Sbjct: 66 -------DRS--EPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRD 116
Query: 208 GQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 117 GKPYELVAEGLLAICIQHECDHLNGKLFVDYL 148
>gi|421858975|ref|ZP_16291224.1| N-formylmethionyl-tRNA deformylase [Paenibacillus popilliae ATCC
14706]
gi|410831494|dbj|GAC41661.1| N-formylmethionyl-tRNA deformylase [Paenibacillus popilliae ATCC
14706]
Length = 160
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 21/160 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV DPVLH+ A+EV + I +++DM M A GVGLAAPQIG+ R+I+++
Sbjct: 6 IVHEPDPVLHQMAKEVTKL---TPNIHKLLNDMADTMYHADGVGLAAPQIGILKRVIIVD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
E+ L+ ++NP + K ++ L EGCLS+ G V RY
Sbjct: 63 VGDEH-----------------GLIEMINPIILK-AEGEQLGTEGCLSIPGLNGDVRRYE 104
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
I V GLDR G+ V+A+ + AR QHE DHL+G L+ +
Sbjct: 105 HITVQGLDRHGKTFTVEASDFLARAFQHEIDHLNGILFTE 144
>gi|340752594|ref|ZP_08689393.1| peptide deformylase [Fusobacterium sp. 2_1_31]
gi|229422396|gb|EEO37443.1| peptide deformylase [Fusobacterium sp. 2_1_31]
Length = 174
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + GD VL + A+EV+ EI E + +DDMV+ M G+GLAAPQ+GV R+ V
Sbjct: 4 EIRKYGDDVLKQIAKEVELSEINDE-FRKFLDDMVETMYKTDGIGLAAPQVGVSKRVFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED I ++NP ++ ++ T F EGCLSV G VER
Sbjct: 63 EDGTGKIRK------------------LINPVIEPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ +G+ ++ A A ++QHE DHL+G L+V+K+ P R++
Sbjct: 105 KKVMLKYLNENGEAVEEIAEELLAVVVQHENDHLNGILFVEKISPMAKRLI 155
>gi|78066802|ref|YP_369571.1| peptide deformylase [Burkholderia sp. 383]
gi|77967547|gb|ABB08927.1| Peptide deformylase [Burkholderia sp. 383]
Length = 177
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L E A+ V+ + + I+ DM + M A G GLAAPQIG+ L++I+
Sbjct: 4 EILKMGDPRLLEVAKPVE--RFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII- 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + D P +++NPK++ +EGCLSV G R VV RY
Sbjct: 61 --------FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ +G D+ G+ I A G+ AR++QHE DHL G LY
Sbjct: 113 AKVRYSGFDQYGEKIDRVADGFHARVVQHEYDHLIGKLY 151
>gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
Length = 170
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 14/137 (10%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLL 162
++ IID+M++ M GVGLAAPQ+GV R+IV++ + + DL
Sbjct: 27 LKEIIDNMIETMYEDDGVGLAAPQVGVQKRLIVID--------------PSGPKERTDLQ 72
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
+I+NP++ +KS + E CLS G++ V++R+ + VTG D +G ++++A + A +
Sbjct: 73 VIINPEIVEKSSQKVDSEEACLSCPGFKCVIKRHETVTVTGTDPEGNDVRIEADDFLAIV 132
Query: 223 LQHECDHLDGTLYVDKM 239
LQHE DHLDGTL VD++
Sbjct: 133 LQHEIDHLDGTLIVDRV 149
>gi|358456719|ref|ZP_09166941.1| Peptide deformylase [Frankia sp. CN3]
gi|357080040|gb|EHI89477.1| Peptide deformylase [Frankia sp. CN3]
Length = 217
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 18/168 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+L PA DP +R++ ++DD+++ M +APGVGLAAPQ+GV LR+ V DT
Sbjct: 10 GDPILRTPA---DPVTDFDDRLRRLVDDLIETMYAAPGVGLAAPQVGVGLRLFVF-DTDW 65
Query: 142 YISYQSKEEIKAFDRRPFDLLMIL-----NPKLK----KKSDRTALFFEGCLSVNGYRAV 192
+ + E NP L+ +++D+ EGCLSV G+
Sbjct: 66 QPNRPDRHEDDDAADDADRPRRRRPRVVANPVLELGPGEQTDQ-----EGCLSVPGHHYA 120
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
R V G+D G+P++ TG AR LQHE DHL G+LY+D++
Sbjct: 121 TTRAASATVRGVDARGEPVEYSGTGLLARCLQHESDHLAGSLYLDRLT 168
>gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farcinica IFM 10152]
gi|54018783|dbj|BAD60153.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
Length = 196
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 90/173 (52%), Gaps = 18/173 (10%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV GDPVLH P V E + +I DM + M +A GVGLAA Q+GVPLR+ V
Sbjct: 6 IVIVGDPVLHNPTERV---TQTPEELAGLIADMYETMDAANGVGLAANQVGVPLRLFV-- 60
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
Y + + + RR ++NP L+ + EGCLSV G +
Sbjct: 61 ----YDCPDAGPDGQPVRRR----GAVINPVLETSEIPETMPDPDDDEEGCLSVPGEQFP 112
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
R VTG+D +G P+ ++ G+ AR+LQHE HLDG LYVDK+V + R
Sbjct: 113 TGRAEWARVTGIDENGGPVDIEGKGFFARMLQHEVGHLDGYLYVDKLVGRHAR 165
>gi|389871012|ref|YP_006378431.1| peptide deformylase [Advenella kashmirensis WT001]
gi|388536261|gb|AFK61449.1| peptide deformylase [Advenella kashmirensis WT001]
Length = 170
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 20/169 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I+Q DP LH A+ P +RI+ ++ DM + M +APGVGLAA Q+ V R
Sbjct: 2 ALLP-ILQFPDPRLHTVAK---PVAQVDDRIRQLVRDMAETMYAAPGVGLAATQVNVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ ++E DLL ++NP++ KSD ++ EGCLSV G
Sbjct: 58 VVVIDVSEE----------------GDDLLTLINPEIIWKSDDKQVYEEGCLSVPGVYDK 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
VER I V L+ G+ + DA G A +QHE DHL G ++V+ + P
Sbjct: 102 VERSASIRVRALNEQGETYEFDAEGLLAVCVQHELDHLLGKVFVEYLSP 150
>gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa]
Length = 258
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ DP+L + +D + + ++ ++D+M VM G+GL+APQ+G+ ++++V
Sbjct: 68 KIVEYPDPILRAKNKRIDSFD---DNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 124
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E+ D ++++NP++ K S +T LF EGCLS G A V+R
Sbjct: 125 NPADEHGEG--------------DEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRP 170
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+++ D +G V+ +G AR+ QHE DHL G L+ D+M
Sbjct: 171 ESVKIDARDINGARFTVNLSGLPARVFQHEFDHLQGILFFDRMT 214
>gi|184201105|ref|YP_001855312.1| peptide deformylase [Kocuria rhizophila DC2201]
gi|183581335|dbj|BAG29806.1| peptide deformylase [Kocuria rhizophila DC2201]
Length = 189
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV +G PVLH PA V + ++ ++ D+ + M ++ GVGLAAPQIGV LRI
Sbjct: 6 IVISGHPVLHRPAARVTEFDAA---LRTLVADLHETMDASHGVGLAAPQIGVGLRIF--- 59
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+Y + E R ++ K+ + EGCLSV G ++R
Sbjct: 60 ------TYLYENEDGVPPRGTLVNPVLTTGKISEVVPDPDEESEGCLSVPGQAWPLKRAD 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
+ + G D +G P+ +A GW AR++QHE DHLDG LYVD++ PK R
Sbjct: 114 WVRIAGQDENGDPVAFEANGWFARVMQHEYDHLDGKLYVDRLNPKWSR 161
>gi|426404650|ref|YP_007023621.1| polypeptide deformylase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425861318|gb|AFY02354.1| polypeptide deformylase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 201
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 14/163 (8%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL------ 136
DP L E ++ V+ G E I + +DMV+ M A G+GLAAPQ+G +R++V+
Sbjct: 10 DPKLREVSQPVES--FGPE-IAKLAEDMVETMYHANGIGLAAPQVGELVRMVVIDTRPKD 66
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + Y Y+ E++A ++P L+++NP++ K +T F EGCLS+ GY V+R+
Sbjct: 67 EKGRRY-KYEEMTELEAAVKQP---LILINPEIVKGEGKTT-FDEGCLSIPGYYETVQRF 121
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
IE+ D +G+ V G A +QHE DHL+GTL++D +
Sbjct: 122 NYIEMKAFDVNGKEYIVKTDGLLAICMQHEMDHLEGTLFIDHL 164
>gi|427402206|ref|ZP_18893278.1| peptide deformylase 2 [Massilia timonae CCUG 45783]
gi|425718979|gb|EKU81920.1| peptide deformylase 2 [Massilia timonae CCUG 45783]
Length = 178
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ V E + + +I DM + M +A G GLAAPQIGV L++++
Sbjct: 5 EILRMGDPRLLRVAQPVT--EFDTPGLHALIADMFETMHAANGAGLAAPQIGVDLQLVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S + D P +++NP L SD EGCLSV G R V RY
Sbjct: 63 -------GFGSNQRYP--DAPPVPETVLINPVLTPLSDEMEEGVEGCLSVPGLRGSVPRY 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D+ G+ I DA G+ AR++QHE DHL G LY
Sbjct: 114 TRLRYEGFDQFGKRIVRDAEGFHARVVQHEVDHLLGILY 152
>gi|84622632|ref|YP_450004.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188578324|ref|YP_001915253.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|242556373|pdb|3DLD|A Chain A, Crystal Structure Of Peptide Deformylase, Xoo1075, From
Xanthomonas Oryzae Pv. Oryzae Kacc10331
gi|84366572|dbj|BAE67730.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188522776|gb|ACD60721.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 171
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A +V +GS + ++ DM + M +A GVGLAAPQI V L+++V
Sbjct: 4 DIIRMGDKRLLRVAPQVT--NLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E P L + N +++ SD +EGCLS+ G RAV+ RY
Sbjct: 62 -------GFEASERYPEAPAVP--LTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
I G DG PI+ +A G+ AR++QHE DHL G LY + +EN D
Sbjct: 113 RYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSR--------IENFD 159
>gi|374324701|ref|YP_005077830.1| peptide deformylase [Paenibacillus terrae HPL-003]
gi|357203710|gb|AET61607.1| peptide deformylase [Paenibacillus terrae HPL-003]
Length = 165
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 85/160 (53%), Gaps = 21/160 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV D VLH+ A+EV + +Q ++DDM M A GVGLAAPQ+G+ R+IV++
Sbjct: 6 IVLEPDDVLHKVAKEVTKI---TPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
E+ L+ ++NP++ + EGCLS+ G V R
Sbjct: 63 AGDEH-----------------GLIKMINPEIVSEEGEQ-FGAEGCLSIPGLNGDVRRAE 104
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V GLDRDG+ I V ATG +R QHE DHL+G L+ D
Sbjct: 105 KVTVKGLDRDGKAITVTATGLLSRAFQHEIDHLNGVLFTD 144
>gi|119509174|ref|ZP_01628325.1| polypeptide deformylase [Nodularia spumigena CCY9414]
gi|119466340|gb|EAW47226.1| polypeptide deformylase [Nodularia spumigena CCY9414]
Length = 177
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 14/168 (8%)
Query: 75 LPE---IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
+PE I+Q GDPVL + A V+ + + IQ +IDD+ + A GVG+AAPQ+
Sbjct: 1 MPEFIPIIQLGDPVLRQKAAWVENTQ--DKYIQKLIDDLTVTVAQANGVGIAAPQVAASY 58
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
R+ ++ S+ ++ + + ++NP++ S +EGCLSV G R
Sbjct: 59 RLFIVA---------SRPNLRYPNAPVMEPTAMINPRIIDHSTEIVKGWEGCLSVPGIRG 109
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+V RY + + DR+G+ K + T + ARI QHE DHLDG ++VD++
Sbjct: 110 LVPRYKHLTIAYTDRNGKFKKQELTDFVARIFQHEYDHLDGVVFVDRV 157
>gi|456393103|gb|EMF58446.1| def2 protein [Streptomyces bottropensis ATCC 25435]
Length = 164
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 86/158 (54%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL P EV E G E + +++DM M A GVGLAA Q+G LR+ V + +
Sbjct: 5 GDPVLQAPCEEVT--EFGPE-LARLVEDMFATMYDARGVGLAANQVGRSLRVFVYDCPDD 61
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ L ++NP+L EGCLS+ G A VERY + V
Sbjct: 62 -------EDVR-------HLGHVVNPRLVSTEGIVLRGPEGCLSLPGLEAGVERYDEAAV 107
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G DG ++V +G+ AR LQHECDHL+G +YVD++
Sbjct: 108 EGFTVDGDRVRVWGSGFFARCLQHECDHLEGRVYVDRL 145
>gi|398837167|ref|ZP_10594477.1| peptide deformylase [Herbaspirillum sp. YR522]
gi|398209158|gb|EJM95839.1| peptide deformylase [Herbaspirillum sp. YR522]
Length = 172
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 20/169 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP LH+ A+ P + ERI+ ++ DM + M APGVGLAA QI V R
Sbjct: 2 ALLP-ILRYPDPRLHKIAK---PVTVFDERIKTLVADMAETMYDAPGVGLAATQIDVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+IV++ +S + K+ L + +NP++ SD ++ EGCLSV G
Sbjct: 58 VIVID-----VSDEGKQ-----------LQVFINPEVLWASDEKRVYDEGCLSVPGIYDG 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
VER ++V D DGQP +V+A A +QHE DHL+G ++V+ + P
Sbjct: 102 VERPARVKVRAQDADGQPFEVEADDLLAVCIQHEMDHLEGKVFVEYLSP 150
>gi|126660127|ref|ZP_01731246.1| polypeptide deformylase [Cyanothece sp. CCY0110]
gi|126618570|gb|EAZ89320.1| polypeptide deformylase [Cyanothece sp. CCY0110]
Length = 169
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 90/163 (55%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI Q G+P+L + A+ V +I E++Q +ID ++ A GVG+AAPQ+ R+ ++
Sbjct: 7 EIAQVGNPILRQQAQYVT--DITDEKLQQLIDTLLTTAIDAKGVGIAAPQVSQSYRLFIV 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
S + D + +++NP L S+ +EGCLSV G R +V RY
Sbjct: 65 ---------CSHPNSRYPDAPSMEPTVMINPCLVSHSEEMVKGWEGCLSVPGVRGLVSRY 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I V LDR G+ + + T + ARI QHE DHL+G L++D++
Sbjct: 116 QKITVEYLDRYGKLHQQEFTDFVARIFQHELDHLNGILFIDRV 158
>gi|395650510|ref|ZP_10438360.1| peptide deformylase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 168
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 85/145 (58%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + ++++ ++DDM + M APG+GLAA Q+ V R++V++ + + + E + F
Sbjct: 20 PVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHQRVVVMDLS------EDRSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + ++ + EGCLSV + VER L +++ LDRDG+P ++
Sbjct: 74 ----------INPEFEPLTEEMGEYQEGCLSVPEFYENVERPLRVKINALDRDGKPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416013325|ref|ZP_11561485.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|416022744|ref|ZP_11567837.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 168
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 86/145 (59%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + E I+ ++DDM + M APG+GLAA Q+ V R++V++ ++
Sbjct: 20 PVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSE-------------- 65
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
DR + ++ +NP+++K +D + EGCLSV G+ V+R + V LDR+G+P ++
Sbjct: 66 DRS--EPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGKPYELV 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAICIQHECDHLNGKLFVDYL 148
>gi|383644850|ref|ZP_09957256.1| polypeptide deformylase [Streptomyces chartreusis NRRL 12338]
Length = 179
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 84/158 (53%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+LH P EV + G E + +++D+ M +A GVGLAA QIG PLR+ V + +
Sbjct: 20 GDPLLHAPCAEVT--DFGPE-LARLVEDLFATMYAAQGVGLAANQIGEPLRVFVYDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ L ++NP+L + EGCLS+ G A ERY V
Sbjct: 77 -------EDVR-------HLGHVVNPRLVEADGVVIRGPEGCLSLPGLEAATERYDHAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G G P+ V TG+ AR LQHE DHLDG +Y D +
Sbjct: 123 EGFTVTGDPVTVHGTGFFARCLQHEYDHLDGRIYADHL 160
>gi|418294659|ref|ZP_12906547.1| peptide deformylase, partial [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379066030|gb|EHY78773.1| peptide deformylase, partial [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 145
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 16/137 (11%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLL 162
I+ +IDDM + M APG+GLAA Q+ V R++V++ +++ + E + F
Sbjct: 5 IRQLIDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSED------RSEPRVF-------- 50
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
+NP+L+ +D + EGCLSV G+ V+R + + LDRDG+P ++ A G A
Sbjct: 51 --INPELESLTDEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGKPYEMVAEGLLAVC 108
Query: 223 LQHECDHLDGTLYVDKM 239
+QHECDHL+G L+VD +
Sbjct: 109 IQHECDHLNGKLFVDYL 125
>gi|402566194|ref|YP_006615539.1| peptide deformylase [Burkholderia cepacia GG4]
gi|402247391|gb|AFQ47845.1| peptide deformylase [Burkholderia cepacia GG4]
Length = 177
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L E A+ V+ + + I+ DM + M A G GLAAPQIG+ L+II+
Sbjct: 4 EILKMGDPRLLEVAKPVE--RFDTPELHEIVADMFETMHHANGAGLAAPQIGLGLQIIIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S + P +++NPKL+ +EGCLSV G R VV RY
Sbjct: 62 -------GFGSNNRYP--EAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ +G D+ G I A G+ AR++QHE DHL G LY
Sbjct: 113 AKVRYSGFDQFGAKIDRVAEGFHARVVQHEYDHLIGKLY 151
>gi|343511282|ref|ZP_08748456.1| peptide deformylase [Vibrio scophthalmi LMG 19158]
gi|342798615|gb|EGU34214.1| peptide deformylase [Vibrio scophthalmi LMG 19158]
Length = 167
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 22/166 (13%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP-GVGLAAPQIGVPLRIIV 135
+I+ A DP L PA +V E +Q +IDDM+ + + G+GLA+ Q+G II+
Sbjct: 5 DILTAPDPRLKIPATKVS----DIESVQTLIDDMLDTLYATDNGIGLASTQVGSKEAIII 60
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
++ ++E D L+++NP++ SD+ A+ EGCLSV Y A VER
Sbjct: 61 IDLSEER----------------NDPLILINPEIVSGSDK-AMGQEGCLSVPEYYADVER 103
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
Y + VTGLDR G P+ ++ + A LQHE DHL G L++D + P
Sbjct: 104 YTSVVVTGLDRQGNPVTIENDEFLAIALQHEIDHLAGNLFIDYLSP 149
>gi|453077083|ref|ZP_21979844.1| peptide deformylase [Rhodococcus triatomae BKS 15-14]
gi|452759947|gb|EME18291.1| peptide deformylase [Rhodococcus triatomae BKS 15-14]
Length = 197
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 104/194 (53%), Gaps = 18/194 (9%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP IV GDPVLH+P + V + SE I ++ DM M +A GVGLAA Q+GVPLR
Sbjct: 2 AILP-IVIVGDPVLHQPTQPVT--QPLSE-IAELVGDMYDTMDAANGVGLAANQVGVPLR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVN 187
+ V D +Y + K RR + ++NP L+ + EGCLSV
Sbjct: 58 LFVY-DCPDY-----DADPKNGTRRRGE---VINPVLETSEIPETMPDPDDDEEGCLSVP 108
Query: 188 GYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
G + R +VTG+D DG+P+ ++ TG+ AR+LQHE HLDG LY D ++ + R
Sbjct: 109 GEQFPTGRANWAKVTGVDLDGEPVSIEGTGFFARMLQHEVGHLDGFLYTDMLIGRHKRAA 168
Query: 248 ENLDLPLAEGCPKL 261
+ + G P L
Sbjct: 169 KKVVKRAGWGVPGL 182
>gi|410584641|ref|ZP_11321743.1| peptide deformylase/methionyl-tRNA formyltransferase
[Thermaerobacter subterraneus DSM 13965]
gi|410504227|gb|EKP93739.1| peptide deformylase/methionyl-tRNA formyltransferase
[Thermaerobacter subterraneus DSM 13965]
Length = 540
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 22/164 (13%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
LP + A +PVL PA+ V + E I+ ++D M M +A G+GLAAPQ+GV R+I
Sbjct: 24 LPIVKGADEPVLRTPAQPV--ARVTRE-IRQLLDRMAATMYAADGIGLAAPQVGVSKRVI 80
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ L+ ++NP++ ++ + +EGCLS+ A VE
Sbjct: 81 VVDVGD-------------------GLIELINPEIVRRGEEVEAAYEGCLSLPRLLAEVE 121
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
R ++VTGLDR G+ I ++ G AR LQHE DHLDG L D+
Sbjct: 122 RPTSVQVTGLDRRGRRIWIEGEGVLARCLQHEIDHLDGVLITDR 165
>gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13]
gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653]
gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13]
gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653]
Length = 175
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + + P E ++++ DM M APG+GLAA Q+G P+R++V++ KE
Sbjct: 11 DPVLRQVSA---PVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP + + SD + + EGCLS+ Y A VER ++V
Sbjct: 67 -------------GEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
D DG+P ++A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFK 163
>gi|344201668|ref|YP_004786811.1| peptide deformylase [Muricauda ruestringensis DSM 13258]
gi|343953590|gb|AEM69389.1| Peptide deformylase [Muricauda ruestringensis DSM 13258]
Length = 196
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 99/166 (59%), Gaps = 13/166 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV GDPVL + A+++ P ++ +I +M + M +A GVGLAAPQ+G+P+R+ +++
Sbjct: 5 IVAYGDPVLRKMAKDITPE---YPKLDELITNMWETMYNAHGVGLAAPQVGIPIRMFMVD 61
Query: 138 DT----KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
T + ++ + +E++ F + + +N K+++++ + F EGCLS+ R V
Sbjct: 62 TTPFAEDDGLTKEEQEQLDGFKK------VFINAKIEEENGKEWDFNEGCLSIPDIREDV 115
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+R +I +T LD D + G AR++QHE DH++G L+ DK+
Sbjct: 116 KRKPEITITYLDEDFKEHTETYDGLLARVIQHEYDHIEGILFTDKL 161
>gi|288923166|ref|ZP_06417311.1| peptide deformylase [Frankia sp. EUN1f]
gi|288345479|gb|EFC79863.1| peptide deformylase [Frankia sp. EUN1f]
Length = 185
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 14/159 (8%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL PA V + ++ ++D+M++ M +APGVGLAAPQ+GV L++ V +
Sbjct: 7 GDPVLRTPAEAV---TVFDAALRRLVDNMIETMYAAPGVGLAAPQVGVSLQVFVFD---- 59
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
Y ++ A RRP L+++NP L+ EGCLSV G+ R V
Sbjct: 60 -TEYDPRD--VAVPRRP---LVVVNPVLETGPGEQH-DDEGCLSVPGHAYPTTRAATATV 112
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
G+D G ++ +A G AR QHE DHL G LY+D++
Sbjct: 113 RGVDATGAAVRYEADGLLARCFQHETDHLHGRLYIDRLT 151
>gi|15887717|ref|NP_353398.1| polypeptide deformylase [Agrobacterium fabrum str. C58]
gi|335033098|ref|ZP_08526470.1| peptide deformylase [Agrobacterium sp. ATCC 31749]
gi|23396541|sp|Q8UID1.1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium fabrum str. C58]
gi|333795774|gb|EGL67099.1| peptide deformylase [Agrobacterium sp. ATCC 31749]
Length = 170
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ ++ ++ +E + + DDM++ M APG+GLAA QIGVP R++V++ +E
Sbjct: 11 DPVLRQQSKLIE--QVDAE-VLRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVARE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ P ++ +NP++ K SD + + EGCLS+ Y A VER + V
Sbjct: 67 ----------GEEKTP---VVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQ 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ RDG+ V+A G A LQHE DHL+G L++D +
Sbjct: 114 YVGRDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHI 150
>gi|359799911|ref|ZP_09302463.1| peptide deformylase [Achromobacter arsenitoxydans SY8]
gi|359362023|gb|EHK63768.1| peptide deformylase [Achromobacter arsenitoxydans SY8]
Length = 170
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 97/167 (58%), Gaps = 20/167 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP LH+ A+ V E+ +RI+ ++ DM + M APGVGLAA Q+ V R
Sbjct: 2 ALLP-ILRYPDPRLHKKAKPV--AEV-DDRIRQLVRDMAETMYDAPGVGLAATQVDVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ +S +S + LL ++NP++ +SD ++ EGCLSV G
Sbjct: 58 VVVID-----VSEESNQ-----------LLTLINPEITWRSDDYKIYEEGCLSVPGVYDE 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
VER I LD DG+P + +A G A +QHE DHL+G ++V+ +
Sbjct: 102 VERASRIRCKALDIDGKPFEFEADGLLAVCVQHELDHLEGKVFVEYL 148
>gi|398947746|ref|ZP_10672382.1| peptide deformylase [Pseudomonas sp. GM33]
gi|426406931|ref|YP_007027030.1| peptide deformylase [Pseudomonas sp. UW4]
gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida]
gi|398161658|gb|EJM49885.1| peptide deformylase [Pseudomonas sp. GM33]
gi|426265148|gb|AFY17225.1| peptide deformylase [Pseudomonas sp. UW4]
Length = 168
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+L+ +D + EGCLSV G+ V+R
Sbjct: 63 LSED------RTEPRVF----------INPELEPLTDDMGQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
++V LDRDG+P ++ A A +QHECDHL+G L+VD +
Sbjct: 107 RVKVKALDRDGKPYELIAEDLLAVCIQHECDHLNGKLFVDYL 148
>gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
Length = 172
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 13/142 (9%)
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
S++I++ DDM++ M +APG+GLAAPQ+GV R+IVL+ KE + +P
Sbjct: 24 SDKIRSFADDMLETMYTAPGIGLAAPQVGVLERMIVLDCVKEDGA------------KPE 71
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
L+M+ NP++ SD T ++ EGCLS+ A V R ++ V LD DG K D G
Sbjct: 72 PLVMV-NPRVIAASDETNVYDEGCLSIPDQYADVTRPKEVRVEWLDLDGNLQKRDMDGLW 130
Query: 220 ARILQHECDHLDGTLYVDKMVP 241
A +QHE DHL+G L++D + P
Sbjct: 131 ATCVQHEIDHLEGKLFIDYLKP 152
>gi|421742910|ref|ZP_16181008.1| peptide deformylase [Streptomyces sp. SM8]
gi|406688681|gb|EKC92604.1| peptide deformylase [Streptomyces sp. SM8]
Length = 221
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 25/181 (13%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
+ ++ + I G+ +LH P REV G++ + ++DDM ++A G GLAA Q+G
Sbjct: 30 EAERGAVRRITVVGEEILHRPCREVAEDAFGTDGLAALVDDMFATNQAAEGAGLAANQVG 89
Query: 129 VPLRIIVLEDTKEY-------ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFE 181
V LR+ V + T E+ ++ +++ A DRR ++ P E
Sbjct: 90 VDLRLFVWDITDEWGVRHVGHLANPVLDDVPATDRR-----LVEEP-------------E 131
Query: 182 GCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
GCLSV G VV R V G D+DG+P+ ++ G+ AR LQHE DHL G LY+D++
Sbjct: 132 GCLSVPGPYRVVPRLDRAVVRGRDKDGRPLVIEGRGYFARCLQHETDHLRGHLYLDRLAR 191
Query: 242 K 242
+
Sbjct: 192 R 192
>gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
Length = 170
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 20/167 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP LH+ A+ V E+ +RI+ ++ DM + M APGVGLAA Q+ V R
Sbjct: 2 ALLP-ILRYPDPRLHKKAKPV--AEV-DDRIRQLVRDMAETMYDAPGVGLAATQVDVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ +S S E LL ++NP++ +SD ++ EGCLSV G
Sbjct: 58 VVVID-----VSEDSNE-----------LLALINPEITWRSDDHKIYEEGCLSVPGIYDE 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
VER I LD DG+P + +A G A +QHE DHL+G ++V+ +
Sbjct: 102 VERASRIRCKALDIDGKPFEFEADGLLAVCVQHELDHLEGKVFVEYL 148
>gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus jostii RHA1]
gi|110818699|gb|ABG93983.1| peptide deformylase [Rhodococcus jostii RHA1]
Length = 196
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 94/188 (50%), Gaps = 24/188 (12%)
Query: 82 GDPVLHEPAREVD--PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
GDPVLHEP V P E+ II DM M +A GVGLAA Q+G+PLR+ V
Sbjct: 10 GDPVLHEPTEAVSQSPAEL-----AEIIADMYDTMDAANGVGLAANQVGLPLRLFV---- 60
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF------FEGCLSVNGYRAVV 193
Y + KA RR ++NP L+ S+R EGCLSV G +
Sbjct: 61 --YDCPDVDGDGKALRRRG----CVVNPVLET-SERPETMPDPDDDVEGCLSVPGEQFPT 113
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLP 253
R +VTG D DG ++++ G+ AR+LQHE HLDG LYVD +V + R +
Sbjct: 114 GRAEWAKVTGTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173
Query: 254 LAEGCPKL 261
G P L
Sbjct: 174 AGWGVPGL 181
>gi|254393357|ref|ZP_05008503.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
gi|294811339|ref|ZP_06769982.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064]
gi|326439928|ref|ZP_08214662.1| polypeptide deformylase [Streptomyces clavuligerus ATCC 27064]
gi|197706990|gb|EDY52802.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
gi|294323938|gb|EFG05581.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064]
Length = 186
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
G+PVLH P V + G + +++D+ M + GVGLAA Q+GV LR+ V + +
Sbjct: 20 GNPVLHTPCETVT--DFGPA-LGKLVEDLFATMYARNGVGLAANQMGVGLRVFVYDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+E++ L I+NP+L EGCLS+ G A VERY V
Sbjct: 77 -------DEVR-------HLGHIVNPRLVAADGVEVRGPEGCLSLPGLEAPVERYDRAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G D DG P++V+ TG+ AR LQHE DHLDG++Y D++
Sbjct: 123 EGQDSDGGPVRVEGTGFFARCLQHETDHLDGSVYADRL 160
>gi|73541574|ref|YP_296094.1| peptide deformylase [Ralstonia eutropha JMP134]
gi|72118987|gb|AAZ61250.1| Formylmethionine deformylase [Ralstonia eutropha JMP134]
Length = 177
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 86/166 (51%), Gaps = 25/166 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L + AR V+ + ++ +I+DM M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDARLLQQARPVE--RFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
FDR P +++NP L+ SD +EGCLSV G
Sbjct: 62 ----------------GFDRNPRYPDAPKVPKTVLINPMLEMLSDDLEDGWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R VV R+ + +G D G I A G+ AR++QHECDHL G LY
Sbjct: 106 RGVVPRHTRLRYSGYDLMGGSIDRVAEGFHARVVQHECDHLQGILY 151
>gi|91762408|ref|ZP_01264373.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718210|gb|EAS84860.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
Length = 172
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 18/158 (11%)
Query: 84 PVLHEPAREV----DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
P+L EP + + P E + + ++DDM+ M +APG+GLAA QIGVP RIIV++ +
Sbjct: 5 PILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIVMDIS 64
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
++ + K+E + F +NP +K K+D T+ + EGCLSV A +ER +
Sbjct: 65 RD----EDKKEPRYF----------VNPLIKNKNDITSKYEEGCLSVPDQFAEIERPNEC 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
EV LD +G+ + A G A +QHE DHL+G L++D
Sbjct: 111 EVEYLDYNGKKQLLKADGLLATCIQHEMDHLEGVLFID 148
>gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498]
Length = 176
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 97/166 (58%), Gaps = 24/166 (14%)
Query: 83 DPVLHEPAR---EVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
DP+L E ++ +DP IQ + DDM++ M +A G+GLAA Q+GVPLR++V
Sbjct: 11 DPILREVSKLVERIDPI------IQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV---- 60
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
+ SK+ P + L+I+NP++ SD +++ EGCLS+ Y A VER +
Sbjct: 61 ---VDIHSKDA-------PKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCL 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
+ DR+G+ ++++A A LQHE DHL+G L++D + KT R
Sbjct: 111 RMCYRDREGKQVEIEANDLLATCLQHEIDHLNGCLFIDH-ISKTKR 155
>gi|253575776|ref|ZP_04853111.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844819|gb|EES72832.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 160
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 84/160 (52%), Gaps = 21/160 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+ D VLH+ A+EV + IQ ++ DM M A GVGLAAPQIG+ R+IV++
Sbjct: 6 IVKEPDEVLHQVAKEVKKI---TPNIQKLLTDMADTMYDAEGVGLAAPQIGILKRVIVVD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
E+ L+ ++NP++ K EGCLS+ GYR V R +
Sbjct: 63 VGDEH-----------------GLIELINPEIVSKEGEQ-FGPEGCLSIPGYRGDVRRAM 104
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V GLDR+G + + AR QHE DHL+G LY D
Sbjct: 105 TVTVKGLDRNGNEVTYTGSELLARAFQHEIDHLNGVLYTD 144
>gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
Length = 170
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 92/157 (58%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E ++++ + DDM++ M APG+GLAA QIG PLR++V++
Sbjct: 11 DPVLRQTSK---PVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMVID----- 62
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
SKEE + R + LNP++ SD +++ EGCLS+ Y A VER ++ V
Sbjct: 63 ---VSKEEEENAPR------IFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVR 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
L DG+ + A G A +QHE DHL+G L++D +
Sbjct: 114 YLGLDGKMHEETADGILATCVQHELDHLNGVLFIDHI 150
>gi|343516477|ref|ZP_08753512.1| peptide deformylase [Vibrio sp. N418]
gi|342796062|gb|EGU31757.1| peptide deformylase [Vibrio sp. N418]
Length = 167
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 22/166 (13%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP-GVGLAAPQIGVPLRIIV 135
+I+ A DP L PA +V E +Q +IDDM+ + + G+GLA+ Q+G II+
Sbjct: 5 DILTAPDPRLKIPATKVS----DIESVQTLIDDMLDTLYATDNGIGLASTQVGSKEAIII 60
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
++ ++E D L+++NP++ SD+ A+ EGCLSV Y A VER
Sbjct: 61 IDLSEER----------------NDPLILINPEVVSGSDK-AMGQEGCLSVPEYYADVER 103
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
Y + VTGLDR G P+ ++ + A LQHE DHL G L++D + P
Sbjct: 104 YTSVVVTGLDRQGNPVTIENDEFLAIALQHEIDHLAGNLFIDYLSP 149
>gi|21219721|ref|NP_625500.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
gi|289773087|ref|ZP_06532465.1| polypeptide deformylase [Streptomyces lividans TK24]
gi|9716195|emb|CAC01493.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)]
gi|289703286|gb|EFD70715.1| polypeptide deformylase [Streptomyces lividans TK24]
Length = 217
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 17/164 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH EV + G E + +++D+ M +A GVGLAA Q+G +R+ V
Sbjct: 58 GDPVLHARCAEVT--DFGPE-LAALVEDLFATMYAAHGVGLAANQVGEAVRVFV------ 108
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
Y ++E L ++NP+L + EGCLS+ G A ERY + V
Sbjct: 109 YDCPDDEDERH--------LGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVV 160
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
TG G+P+ V TG+ AR LQHECDHL+G +Y D++ + R
Sbjct: 161 TGFTVAGEPVTVRGTGFFARCLQHECDHLEGRVYADRLTGRRHR 204
>gi|23396573|sp|Q9FCA2.2|DEF2_STRCO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
Length = 179
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 86/164 (52%), Gaps = 17/164 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH EV + G E + +++D+ M +A GVGLAA Q+G +R+ V
Sbjct: 20 GDPVLHARCAEVT--DFGPE-LAALVEDLFATMYAAHGVGLAANQVGEAVRVFV------ 70
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
Y + D L ++NP+L + EGCLS+ G A ERY + V
Sbjct: 71 ---YDCPD-----DEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
TG G+P+ V TG+ AR LQHECDHL+G +Y D++ + R
Sbjct: 123 TGFTVAGEPVTVRGTGFFARCLQHECDHLEGRVYADRLTGRRHR 166
>gi|406986998|gb|EKE07463.1| hypothetical protein ACD_18C00081G0006 [uncultured bacterium]
Length = 165
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 8/162 (4%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+V + L + + EVD + E Q + M+K M G+GLAAPQ+G +R+ V+
Sbjct: 4 EVVTIPNENLRKRSLEVDLDFVHDEENQKFFEAMIKTMYEDDGIGLAAPQVGKNIRVCVI 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
K+ + Q K A + L+++NP +K + +T + EGCLSV V+RY
Sbjct: 64 --GKDALK-QDKNNTLAIED-----LVLINPTWQKINKKTQVDLEGCLSVPKTYGKVKRY 115
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
++ V LDR G+ ++ +A + AR++QHE DHL+G L++DK
Sbjct: 116 KNVYVEALDRHGEKMEFEANNFFARVVQHEVDHLNGVLFIDK 157
>gi|384083011|ref|ZP_09994186.1| peptide deformylase [gamma proteobacterium HIMB30]
Length = 170
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 19/165 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I++ DP L A+ P E + I+ +IDDM + M A G+GLAA QI V LR++
Sbjct: 3 LRKILEFPDPRLRTIAK---PVETVDDSIRTLIDDMFETMYEAQGIGLAATQIDVHLRVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ ++ P L+++NP+ + EGCLSV G VV+
Sbjct: 60 VID-------------LQDDQNEP---LVMINPEFDTLTKEIDEMQEGCLSVPGIHEVVK 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I + LDRDG +++ATG A +QHECDHL+G L+VD +
Sbjct: 104 RPEHIRLKALDRDGNSYELEATGLFAVCIQHECDHLNGKLFVDHL 148
>gi|241764867|ref|ZP_04762871.1| peptide deformylase [Acidovorax delafieldii 2AN]
gi|241365616|gb|EER60346.1| peptide deformylase [Acidovorax delafieldii 2AN]
Length = 197
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 12/160 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
I++ GDP L A+ V + + + +I DM++ MR+A G GLAAPQIGV L++++
Sbjct: 23 SILKMGDPRLLRIAQPVQ--KFDTPELHQLIRDMLETMRAAQGAGLAAPQIGVDLQVVI- 79
Query: 137 EDTKEYISYQSKEEIKAFDRRPF-DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ S E + + RP +++NP + + +EGCLSV G R V R
Sbjct: 80 --------FGSNEPNRRYPDRPLVPPTVLVNPVITPLGEDEEEDWEGCLSVPGLRGKVPR 131
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+L I +G D G PI A G+ AR++QHECDHL G LY
Sbjct: 132 WLHIRYSGFDAHGSPIDRVAEGFHARVVQHECDHLMGKLY 171
>gi|254422211|ref|ZP_05035929.1| peptide deformylase [Synechococcus sp. PCC 7335]
gi|196189700|gb|EDX84664.1| peptide deformylase [Synechococcus sp. PCC 7335]
Length = 176
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 11/167 (6%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
K+ +I + GDPVL PA +V ++ + +Q +ID ++ + GVG+AAPQ+ L+
Sbjct: 2 TKILKIAELGDPVLRSPADKV--CDVHTPAVQTLIDQLISLTLERNGVGIAAPQVSHSLQ 59
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ ++ S+ ++ D ++NP++ SD +EGCLSV G R +
Sbjct: 60 LFIVA---------SRPNLRYLHAPKMDPTAMINPQILHYSDAVTAGWEGCLSVPGMRGL 110
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V+R +IEV+ DR GQ + T + ARI+QHE DH++G +++D++
Sbjct: 111 VKRSKEIEVSYTDRYGQQQQQIFTDFVARIIQHEYDHINGKVFLDRI 157
>gi|398989735|ref|ZP_10692968.1| peptide deformylase [Pseudomonas sp. GM24]
gi|399012774|ref|ZP_10715092.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398115018|gb|EJM04813.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398146961|gb|EJM35685.1| peptide deformylase [Pseudomonas sp. GM24]
Length = 168
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + + E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LS------EDRTEPRVF----------INPEFESLTEEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|83816785|ref|YP_445415.1| peptide deformylase [Salinibacter ruber DSM 13855]
gi|294507298|ref|YP_003571356.1| peptide deformylase [Salinibacter ruber M8]
gi|123739741|sp|Q2S316.1|DEF_SALRD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|83758179|gb|ABC46292.1| peptide deformylase [Salinibacter ruber DSM 13855]
gi|294343626|emb|CBH24404.1| Peptide deformylase [Salinibacter ruber M8]
Length = 195
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 93/154 (60%), Gaps = 6/154 (3%)
Query: 87 HEPAR-EVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISY 145
HE R E DP + +E +Q +ID+M++ M +A G+GLAAPQ+G R+ V++ ++
Sbjct: 10 HEALRNETDPVQENTEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVVD-----LTP 64
Query: 146 QSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLD 205
+ E +A + P ++ +NP++ ++S+ TA EGCLS+ R V R I + D
Sbjct: 65 MADEIAEAGEPLPPQPMVFINPEIVEESEDTAEMEEGCLSIPEVREAVARPERIRMRYRD 124
Query: 206 RDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R+ + +++A G +R+LQHE DHLDG L+ D +
Sbjct: 125 REFEEQELEAGGMLSRVLQHERDHLDGVLFTDYL 158
>gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB
702]
gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB
4381]
Length = 170
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ + E K + F +NP++ K L+ EGCLSV G A
Sbjct: 61 FMVIDVSDE------KNLPQVF----------VNPEIVSKQGEQ-LYQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQP ++ G A +QHE DHLDG L+VD + P
Sbjct: 104 VSRADAITVRYLDRQGQPQELHTDGLLAVCIQHEMDHLDGKLFVDYLSP 152
>gi|427721303|ref|YP_007069297.1| peptide deformylase [Calothrix sp. PCC 7507]
gi|427353739|gb|AFY36463.1| Peptide deformylase [Calothrix sp. PCC 7507]
Length = 177
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 11/167 (6%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
++L I+Q G+P L E + V+ I E IQ +I++++ + A GVG+AAPQ+ R
Sbjct: 2 SELVPIIQLGNPQLREKSALVE--NIQDEEIQRLIENLITTVAQANGVGIAAPQVAAKKR 59
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ ++ ++ Y + E++ ++NPK+ S +EGCLSV G R +
Sbjct: 60 LFIVA-SRPNARYPNAPEMEP--------TAMINPKIIAHSTEVVKGWEGCLSVPGVRGL 110
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ RY IE+ DR+G+ + + T + ARI QHE DHLDG ++VD++
Sbjct: 111 IPRYQAIEIEYTDRNGKLQQQELTDFVARIFQHEYDHLDGIVFVDRL 157
>gi|440694499|ref|ZP_20877114.1| peptide deformylase [Streptomyces turgidiscabies Car8]
gi|440283497|gb|ELP70756.1| peptide deformylase [Streptomyces turgidiscabies Car8]
Length = 192
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 25/175 (14%)
Query: 70 NKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
+ ++ + GDPVLH P EV + + +++DM M +A GVGLAA QIG
Sbjct: 16 GTRGRVRPLTLLGDPVLHSPCVEVTHFD---AELAALVEDMFATMYAAQGVGLAANQIGR 72
Query: 130 PLRIIVLE----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLS 185
PLR+ V + D ++ + ++NP+L + + EGCLS
Sbjct: 73 PLRVFVYDCPDDDDVRHVGH------------------VVNPRLVEATGLVLRGPEGCLS 114
Query: 186 VNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+ G A ER+ + V G G P++V+ TG+ AR LQHE DHL G YVD++
Sbjct: 115 LPGLEAGTERHDETTVEGFTATGDPVRVEGTGFFARCLQHELDHLAGDTYVDRLT 169
>gi|297538577|ref|YP_003674346.1| peptide deformylase [Methylotenera versatilis 301]
gi|297257924|gb|ADI29769.1| peptide deformylase [Methylotenera versatilis 301]
Length = 182
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 6/158 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ G+P L A V+ + + + ++I D+ M++ G G+AAPQIG LR+++
Sbjct: 6 VLRMGEPCLLLKAAPVE--KFDTPELHSLIQDLEDTMQAMNGAGIAAPQIGESLRVVIFG 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
S + + D +++NP + D +EGCLSV G R +V RYL
Sbjct: 64 QK----SSDENKNPRYPDADAVPYTVLINPVITPIGDDVEDGWEGCLSVPGMRGIVPRYL 119
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D+ G PI +G+ AR++QHECDHLDG LY
Sbjct: 120 RLHYAGFDQYGNPIDRLVSGFHARVVQHECDHLDGVLY 157
>gi|374299878|ref|YP_005051517.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
gi|332552814|gb|EGJ49858.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
Length = 182
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 18/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ D VL + E+ GEI E ++ + DM + M + G+GLAAPQ+G R++V++
Sbjct: 5 ILKYPDAVLARKSLEI--GEITDE-LRQLAKDMAETMYTNEGIGLAAPQVGECCRLVVID 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
I D+R DL +++NPK+ + + EGCLSV+GYR+ V R
Sbjct: 62 -------------ITGPDKRE-DLRVLVNPKITAAEGKV-VSEEGCLSVSGYRSDVARSE 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V D DG+P+ ++A G A LQHE DHLDG L++D++
Sbjct: 107 KVTVEATDLDGKPLSIEADGLLAVCLQHELDHLDGVLFIDRI 148
>gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
Length = 172
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 13/142 (9%)
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
S+ ++ + DDM++ M APG+GLAAPQIGV R+IVL+ KE + RP
Sbjct: 24 SDELRALADDMLETMYDAPGIGLAAPQIGVLERLIVLDCVKE----------EGATPRP- 72
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
L++ NP++ SD T+++ EGCLS+ A V R ++EV +D++G+ + G
Sbjct: 73 --LVMFNPEIISASDETSVYEEGCLSIPDQFAEVTRPAEVEVAWMDQNGKAQRETFDGLW 130
Query: 220 ARILQHECDHLDGTLYVDKMVP 241
A +QHE DHL+G L++D + P
Sbjct: 131 ATCVQHEIDHLNGKLFIDYLKP 152
>gi|187928362|ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J]
gi|187725252|gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J]
Length = 177
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A+ V+ + + +I+DM M +A G GLAAPQIGV L++++
Sbjct: 5 ILKMGDSRLLRVAKPVE--RFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62
Query: 138 DTKEYISYQSKEEIKAFDRRP----FDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
+ DR P +++NP ++ SD +EGCLSV G R VV
Sbjct: 63 FDRN-------------DRYPDAPAVPKTVLINPTIEPLSDEMEEGWEGCLSVPGLRGVV 109
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
RY + TG D+ G I A G+ AR++QHECDHL G LY
Sbjct: 110 PRYTRLRYTGFDQHGHAIDRIAEGFHARVVQHECDHLQGVLY 151
>gi|434400919|ref|YP_007134923.1| Peptide deformylase [Stanieria cyanosphaera PCC 7437]
gi|428272016|gb|AFZ37957.1| Peptide deformylase [Stanieria cyanosphaera PCC 7437]
Length = 173
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI Q G+P+L + AR ++ + +ID +++ + SA GVG+AAPQ+ R+ V+
Sbjct: 5 EIAQLGNPILRQKARLIE--NFNDPNLSALIDSLLQTVASANGVGIAAPQVSQSYRVFVI 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
S+ I+ +++NP++ S+ +EGCLS+ G R ++ RY
Sbjct: 63 A---------SRPNIRYPHAPMMQPTVMINPQIIAYSEEKVQDWEGCLSIPGLRGLIRRY 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
IEV +R+GQ + T + ARI QHE DHLDG +++D++
Sbjct: 114 QTIEVEYYNREGQKQRQILTDFVARIFQHELDHLDGLVFLDRL 156
>gi|403527608|ref|YP_006662495.1| peptide deformylase Def [Arthrobacter sp. Rue61a]
gi|403230035|gb|AFR29457.1| peptide deformylase Def [Arthrobacter sp. Rue61a]
Length = 190
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 22/166 (13%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
G+PVLH A EV E+ + ++ +I DM + +A GVGLAAPQIGV R+ V +
Sbjct: 10 GEPVLHRRASEV---EVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFVYK---- 62
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVERY 196
Y + +++ + +++NP L AL EGCLS G ++R
Sbjct: 63 ---YANDDDVP-------EQGVVVNPVLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRA 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
V G D +G + +ATGW ARILQHE DHLDG LYV+++V +
Sbjct: 113 EWTRVQGFDGNGNALDFEATGWFARILQHEFDHLDGKLYVNRLVDR 158
>gi|395764939|ref|ZP_10445559.1| peptide deformylase [Bartonella sp. DB5-6]
gi|395413756|gb|EJF80218.1| peptide deformylase [Bartonella sp. DB5-6]
Length = 176
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L E ++ P E +Q + DDM+ +M A GVGLAA QIGVPLR++V++ + +
Sbjct: 11 DPILREVSK---PVEHVDSTLQKLADDMLDIMYEAQGVGLAAIQIGVPLRMLVIDVSGDD 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
I + P L+I+NPK+ SD ++ EGCLS+ Y A VER + V
Sbjct: 68 IQ-----------KNP---LVIINPKILWLSDERNIYKEGCLSIPEYYAEVERPKRLCVR 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
DR G+ +++A A LQHE DHL+G L++D
Sbjct: 114 YQDRQGKQTEIEADDLLATCLQHEIDHLNGCLFID 148
>gi|338999392|ref|ZP_08638039.1| peptide deformylase [Halomonas sp. TD01]
gi|338763721|gb|EGP18706.1| peptide deformylase [Halomonas sp. TD01]
Length = 170
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 20/169 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKLP I++ D L A P E + ++ ++DDM++ M A G+GLAA Q+ V R
Sbjct: 2 AKLP-ILEFPDERLRTKAA---PVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHSR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ + + +P L+++NP+ + D EGCLS+ Y A
Sbjct: 58 VVVMD-------------VSDDNSQP---LVLINPRYEPIGDEKEPLSEGCLSIPEYYAE 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V RYL + + LDR G+P +++A G A +QHE DHL+G L+VD + P
Sbjct: 102 VPRYLKVTLNALDRSGEPYELEADGLLAHCIQHEYDHLEGVLFVDYLSP 150
>gi|254456015|ref|ZP_05069444.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
gi|207083017|gb|EDZ60443.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
Length = 172
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 17/160 (10%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+ +P+L + ++ VD ++G E Q ++DDM++ M APG+GLAA Q+GVP RIIV++
Sbjct: 6 IITEPNPLLRQVSKPVD--QVGKEE-QILMDDMLETMYDAPGIGLAAIQVGVPKRIIVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+KE + K+E + F +NP +K K + + EGCLSV A ++R
Sbjct: 63 ISKE----EGKKEPRYF----------VNPVIKNKDSIKSTYEEGCLSVPNQFAEIDRPS 108
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
EV LD G+ + A G A +QHE DHL+G L++D
Sbjct: 109 KCEVEYLDYHGKKQLLKADGLLATCIQHEMDHLEGVLFID 148
>gi|390568903|ref|ZP_10249195.1| peptide deformylase [Burkholderia terrae BS001]
gi|420256246|ref|ZP_14759100.1| peptide deformylase [Burkholderia sp. BT03]
gi|389939252|gb|EIN01089.1| peptide deformylase [Burkholderia terrae BS001]
gi|398043607|gb|EJL36499.1| peptide deformylase [Burkholderia sp. BT03]
Length = 177
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ VD + + ++ DM + M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIAKPVD--HFDTPELHELVRDMFETMHDANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ E P +L +NP + S T +EGCLSV G R V R
Sbjct: 62 -------GFGHNERYPDAPSVPETVL--INPTITPVSLDTEEGWEGCLSVPGLRGAVSRL 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D+ G+PI A G+ AR++QHECDHL G LY
Sbjct: 113 SMIRYHGFDQFGKPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|309782141|ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
gi|404377835|ref|ZP_10982935.1| peptide deformylase 2 [Ralstonia sp. 5_2_56FAA]
gi|308919207|gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
gi|348612981|gb|EGY62584.1| peptide deformylase 2 [Ralstonia sp. 5_2_56FAA]
Length = 177
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A+ V+ + + +I+DM M +A G GLAAPQIGV L++++
Sbjct: 5 ILKMGDSRLLRVAKPVE--RFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFG 62
Query: 138 DTKEYISYQSKEEIKAFDRRP----FDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
+ DR P +++NP ++ SD +EGCLSV G R VV
Sbjct: 63 FDRN-------------DRYPDAPAVPKTVLINPTVEPLSDEMEEGWEGCLSVPGLRGVV 109
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
RY + TG D+ G I A G+ AR++QHECDHL G LY
Sbjct: 110 PRYTRLRYTGFDQHGHAIDRIAEGFHARVVQHECDHLQGVLY 151
>gi|398828003|ref|ZP_10586205.1| peptide deformylase [Phyllobacterium sp. YR531]
gi|398218721|gb|EJN05223.1| peptide deformylase [Phyllobacterium sp. YR531]
Length = 176
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E ++ DM+ M APG+GLAA QIG PL+++V++ KE
Sbjct: 11 DPLLRQISK---PVESFDADLRKFSADMLDTMYDAPGIGLAAIQIGTPLQMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+E KA + +NPK+ SD ++ EGCLS+ Y A VER + V+
Sbjct: 67 ------DEPKAPQ-------VYINPKVLWSSDERNVYEEGCLSIPDYYAEVERPKQVRVS 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
LD DG+ +VDA G A LQHE DHL+G L++D +MV K F+
Sbjct: 114 YLDIDGKAQEVDADGLLATCLQHEIDHLNGVLFIDYISRLKREMVVKKFK 163
>gi|329114617|ref|ZP_08243376.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
gi|326696097|gb|EGE47779.1| Peptide deformylase 1 [Acetobacter pomorum DM001]
Length = 174
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 78 IVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
I + G PVL + A+EV DP + IQ +I DM + + + GVGLAAPQ+ V R+ +
Sbjct: 6 IARMGHPVLRQSAQEVPDPT---APDIQRLIADMRETLEESGGVGLAAPQVFVSQRLFI- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y ++ E + D P + ++NP L D T L EGCLS+ R V RY
Sbjct: 62 -----YSVPLARSEGE--DDPPLPVQALINPILTPVDDETQLRAEGCLSLPDLRGEVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D+ GQ ++ ATG++A ++QHE DHLDG LY +M
Sbjct: 115 KRIWYAGFDQHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMT 158
>gi|119964524|ref|YP_948136.1| peptide deformylase [Arthrobacter aurescens TC1]
gi|119951383|gb|ABM10294.1| peptide deformylase [Arthrobacter aurescens TC1]
Length = 190
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 22/166 (13%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
G+PVLH A EV E+ + ++ +I DM + +A GVGLAAPQIGV R+ V +
Sbjct: 10 GEPVLHRRASEV---EVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFVYK---- 62
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVERY 196
Y + +++ + +++NP L AL EGCLS G ++R
Sbjct: 63 ---YANDDDVP-------EQGVVVNPVLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRA 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
V G D +G + +ATGW ARILQHE DHLDG LYV+++V +
Sbjct: 113 EWTRVQGFDGNGNALDFEATGWFARILQHEFDHLDGILYVNRLVDR 158
>gi|406975169|gb|EKD98015.1| hypothetical protein ACD_23C00625G0007 [uncultured bacterium]
Length = 179
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A+ V ++ + ++ DM + M+S G GLAAPQIGV L++++
Sbjct: 6 ILKMGDPRLLRTAQLVQ--SFDTDELHLLVRDMFETMQSVHGAGLAAPQIGVDLQVVIFG 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
Y + + +++NP + ++ +EGCLSV G R V R+L
Sbjct: 64 SGTPNPRYPERPLVPP--------TVLVNPVITPLGEQEEEDWEGCLSVPGLRGKVPRWL 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I TG D G PI A G+ AR++QHECDHL G LY
Sbjct: 116 RIRYTGFDPYGDPIDRTAEGFHARVVQHECDHLIGKLY 153
>gi|417368583|ref|ZP_12140072.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353586245|gb|EHC45878.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
Length = 164
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 22/159 (13%)
Query: 97 EIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDR 156
E+ +E IQ I+DDM + M + G+GLAA Q+ + LRIIV++ +S E
Sbjct: 18 EVNAE-IQRIVDDMFETMYAEEGIGLAATQVDIHLRIIVID-----VSENRDER------ 65
Query: 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDAT 216
L+++NP+L +KS T + EGCLS+ RA+V R +++ LDRDG P +++A
Sbjct: 66 -----LVLINPELLEKSGETGIE-EGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEAD 119
Query: 217 GWQARILQHECDHLDGTLYVDKMVP-KTFRI---VENLD 251
G A +QHE DHL G L++D + P K RI VE LD
Sbjct: 120 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLD 158
>gi|332285819|ref|YP_004417730.1| peptide deformylase [Pusillimonas sp. T7-7]
gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7]
Length = 170
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 100/178 (56%), Gaps = 27/178 (15%)
Query: 73 AKLPEIVQAGDPVLHE---PAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
A LP I++ DP LH+ P +EVD +RI+ ++ DM + M APGVGLAA Q+ V
Sbjct: 2 ALLP-ILRYPDPRLHKVAKPVQEVD------DRIRQLVRDMAETMYDAPGVGLAATQVDV 54
Query: 130 PLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
R++V++ +++ DL++++NP++ KSD ++ EGCLSV G
Sbjct: 55 HERVVVIDVSED----------------GNDLIVLINPEILWKSDEVQVYEEGCLSVPGV 98
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRI 246
VER I V L+ G+P + DA G A +QHE DHL G ++V+ + V K RI
Sbjct: 99 YDEVERSARIRVRALNEQGEPYEFDAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRI 156
>gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881]
gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881]
Length = 168
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 20/165 (12%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKL EI++ DP L A+ P E + ++ +IDDM++ M A G+GLAA Q+ V R
Sbjct: 2 AKL-EILEFPDPRLRTVAK---PVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ ++E + E K + +NP++ +D A + EGCLSV G+
Sbjct: 58 LLVMDLSEE------RNEPKVY----------INPQITPLTDELAPYEEGCLSVPGFYEK 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
V+R + + LDRDG +V+A A +QHE DHLDG L+VD
Sbjct: 102 VKRAARVRINALDRDGNAFEVEADELLATCIQHEIDHLDGKLFVD 146
>gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
Length = 273
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ DP+L + +D I E ++N++D M VM G+GL+APQ+G+ ++++V
Sbjct: 82 KIVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF 138
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + KE ++++NPK+KK SD+ F EGCLS G A V R
Sbjct: 139 NPAGE--PGEGKE------------IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRP 184
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+++ D G+ + + ARI QHE DHL+G L+ D+M
Sbjct: 185 QSVKIDARDITGERFSISLSSLPARIFQHEYDHLEGVLFFDRMT 228
>gi|381179529|ref|ZP_09888380.1| peptide deformylase [Treponema saccharophilum DSM 2985]
gi|380768578|gb|EIC02566.1| peptide deformylase [Treponema saccharophilum DSM 2985]
Length = 193
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 19/165 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I + G+ VL + V+P EI + ++ + +DM + M A GVGLAAPQ+G+ R V+
Sbjct: 4 KIYKLGEEVLRKKCAAVEPSEI-DDTMRALFEDMFETMIEANGVGLAAPQVGISKRFFVV 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
S +++K R F +NP++ S + EGCLS+ G+ + R
Sbjct: 63 ---------MSDDDVK----RVF-----INPQIVSTSAEMCDYEEGCLSLPGFNENIRRP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
+ V LD G+P ++A G ARI+QHE DHLDG +Y+D+ P
Sbjct: 105 AKVTVQALDEKGKPFTLEAEGLLARIIQHENDHLDGIVYIDRGDP 149
>gi|344171473|emb|CCA84085.1| peptide deformylase [Ralstonia syzygii R24]
Length = 170
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLL 162
+ +I+DM M +A G GLAAPQIGV L++++ + E P +L
Sbjct: 21 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF-------GFDRSERYPDAPAVPKTVL 73
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
+NP ++ SD +EGCLSV G R VV RY + TG D+ GQ I A G+ AR+
Sbjct: 74 --INPTIEPLSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGQAIDRIAEGFHARV 131
Query: 223 LQHECDHLDGTLY 235
+QHECDHL G LY
Sbjct: 132 VQHECDHLQGILY 144
>gi|374263599|ref|ZP_09622147.1| hypothetical protein LDG_8600 [Legionella drancourtii LLAP12]
gi|363536189|gb|EHL29635.1| hypothetical protein LDG_8600 [Legionella drancourtii LLAP12]
Length = 179
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 16/163 (9%)
Query: 78 IVQAGDPVL---HEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
+V+ G+ L EP + DP + +I +M M + GVG+AAPQIG R+I
Sbjct: 6 VVKMGNKQLGIPSEPVVDFDPAIRSYPELTELIQNMKDTMDAKGGVGIAAPQIGYNKRVI 65
Query: 135 VL--EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ E K Y + +P +++NP + SD +EGCLSV G R +
Sbjct: 66 MFGFEKNKRYP-----------NEKPVPFTILINPIYQIMSDELVEEWEGCLSVPGLRGL 114
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
V RY IE +G D +G+ I A + ARI+QHECDHLDG L+
Sbjct: 115 VPRYKKIEYSGYDPEGKLITRVAADFHARIIQHECDHLDGVLF 157
>gi|359146619|ref|ZP_09180097.1| peptide deformylase [Streptomyces sp. S4]
Length = 206
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 95/181 (52%), Gaps = 25/181 (13%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
+ ++ + I G+ +LH P REV G++ + ++DDM ++A G GLAA Q+G
Sbjct: 15 EAERGAVRRITVVGEEILHRPCREVTEDAFGTDGLAALVDDMFATNQAAEGAGLAANQVG 74
Query: 129 VPLRIIVLEDTKEY-------ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFE 181
V LR+ V + T ++ ++ +++ A DRR ++ P E
Sbjct: 75 VDLRLFVWDITDDWGVRHVGHLANPVLDDVPATDRR-----LVEEP-------------E 116
Query: 182 GCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
GCLSV G VV R V G D+DG+P+ ++ G+ AR LQHE DHL G LY+D++
Sbjct: 117 GCLSVPGPYRVVPRLDRAVVRGRDKDGRPLVIEGRGYFARCLQHETDHLRGHLYLDRLAR 176
Query: 242 K 242
+
Sbjct: 177 R 177
>gi|332876937|ref|ZP_08444690.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332685045|gb|EGJ57889.1| peptide deformylase [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 192
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+ GDPVL + A ++ P + +I +M M A GVGLAAPQIG+P+R+ V+
Sbjct: 5 IIAYGDPVLRKVATDISPD---YPNLNTLIANMYDTMNYAYGVGLAAPQIGLPIRLFVV- 60
Query: 138 DTKEY-----ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
DT + ++ + + + F + +N K+ +++ LF EGCLS+ G R
Sbjct: 61 DTAPFADDDDLTEEERTFLSNFKK------TFINAKITEETGDKWLFNEGCLSIPGVRED 114
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V R I + +D P ++ TG AR++QHE DH++G L+ DK+
Sbjct: 115 VSRQKQITIEFVDEQFTPQRLTLTGLAARVVQHEYDHIEGILFTDKL 161
>gi|398841293|ref|ZP_10598516.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398862313|ref|ZP_10617923.1| peptide deformylase [Pseudomonas sp. GM79]
gi|398108801|gb|EJL98750.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398230960|gb|EJN16964.1| peptide deformylase [Pseudomonas sp. GM79]
Length = 168
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + + ++ ++DDM + M APG+GLAA Q+ V RI+V++ +++ + E + F
Sbjct: 20 PVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED------RSEPRVF 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP+ + +D + EGCLSV G+ V+R +++ DRDGQP ++
Sbjct: 74 ----------INPEFEVLTDEVDQYQEGCLSVPGFYENVDRPQKVKIKAQDRDGQPYELI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|348617591|ref|ZP_08884128.1| Peptide deformylase (PDF) [Candidatus Glomeribacter gigasporarum
BEG34]
gi|347817068|emb|CCD28735.1| Peptide deformylase (PDF) [Candidatus Glomeribacter gigasporarum
BEG34]
Length = 167
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 25/160 (15%)
Query: 83 DPVLH---EPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
DP LH +P EVD RI+ +I DM + M +APG+GLAA Q+ V R++V++ +
Sbjct: 11 DPRLHTVAQPVAEVDA------RIRQLIRDMAETMYAAPGIGLAATQVNVHQRVMVIDVS 64
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
++++++AF +NP+L + S +T EGCLSV G VER I
Sbjct: 65 ------DTRDQLQAF----------INPELTETSAQTKPGEEGCLSVPGIYDTVERSERI 108
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ L+ +G+ +++DA G A +QHE DHL+G ++VD +
Sbjct: 109 RLRALNEEGKAVEIDANGLLAVCIQHEVDHLNGKVFVDYL 148
>gi|33603069|ref|NP_890629.1| peptide deformylase [Bordetella bronchiseptica RB50]
gi|39931041|sp|Q7WG25.1|DEF2_BORBR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|33568700|emb|CAE34458.1| peptide deformylase [Bordetella bronchiseptica RB50]
Length = 176
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + ++ +IDDM + M A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + P +L NP ++ S +EGCLSV G R +V RY
Sbjct: 62 ------GFERNDRYPDAPAVPRTIL--CNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I +G D GQ I+ +A G+ AR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLY 151
>gi|383767493|ref|YP_005446475.1| peptide deformylase [Phycisphaera mikurensis NBRC 102666]
gi|381387762|dbj|BAM04578.1| peptide deformylase [Phycisphaera mikurensis NBRC 102666]
Length = 172
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 19/158 (12%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL E R VD E + + M+++M +APGVGLAAPQ+G+P R+ +
Sbjct: 15 DPVLRERCRPVDAA---GEEARAVARRMIELMHAAPGVGLAAPQVGLPWRL--------F 63
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ S +E D + NP L S TA EGCLS+ + V R ++ +
Sbjct: 64 VANWSGDE--------GDDHVFFNPVLSDASAATAAKEEGCLSLPEVQVEVTRPREVTIR 115
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+ DG+ + A+G+ AR+ QHECDHLDG + +DKM
Sbjct: 116 AVGLDGEAFQRTASGFPARVWQHECDHLDGVMILDKMT 153
>gi|186476100|ref|YP_001857570.1| peptide deformylase [Burkholderia phymatum STM815]
gi|184192559|gb|ACC70524.1| peptide deformylase [Burkholderia phymatum STM815]
Length = 177
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ VD + + ++ DM + M A G GLAAPQIGV L++++
Sbjct: 4 EILKMGDPRLLRIAKPVD--HFDTPELHELVRDMFETMHDANGAGLAAPQIGVDLQVVIF 61
Query: 137 E--DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+ Y S E +++NP + S T +EGCLSV G R V
Sbjct: 62 GFGHNERYPDAPSVPET-----------VLINPTITPVSLDTEEGWEGCLSVPGLRGAVS 110
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R I G D+ G+PI A G+ AR++QHECDHL G LY
Sbjct: 111 RLSMIRYHGFDQFGKPIDRVAEGFHARVVQHECDHLIGKLY 151
>gi|407776883|ref|ZP_11124155.1| peptide deformylase [Nitratireductor pacificus pht-3B]
gi|407301579|gb|EKF20699.1| peptide deformylase [Nitratireductor pacificus pht-3B]
Length = 176
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 92/170 (54%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L E ++ P E + ++ DDM++ M APG+GLAA Q+G PLR++V
Sbjct: 11 DPILREASK---PVERIDDALRAFADDMLETMYDAPGIGLAAIQVGEPLRMLV------- 60
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
I K+E A L+++NP++ +S + EGCLS+ Y A VER + V
Sbjct: 61 IDVADKDEEPA-------PLVVINPEIVARSTALNVHEEGCLSIPDYYAEVERPAAVTVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
DRDG+ ++A G A LQHE DHL+G L++D MV + FR
Sbjct: 114 FTDRDGKQQTIEADGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFR 163
>gi|423136631|ref|ZP_17124274.1| peptide deformylase [Fusobacterium nucleatum subsp. animalis F0419]
gi|371961785|gb|EHO79409.1| peptide deformylase [Fusobacterium nucleatum subsp. animalis F0419]
Length = 174
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + G+ VL + A+EV+ EI E + +DDMV+ M GVGLAAPQ+GV R+ V
Sbjct: 4 EIKRYGEEVLKQIAKEVELNEINDE-FRKFLDDMVETMYETDGVGLAAPQVGVSKRVFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D + ++NP + ++ T F EGCLSV G VER
Sbjct: 63 DDGNGVVR------------------KVINPIVVPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ +G+ ++ A + A ++QHE DHLDG L+V+K+ P R++
Sbjct: 105 KRVLLKYLNENGEEVEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLI 155
>gi|114327146|ref|YP_744303.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
gi|114315320|gb|ABI61380.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
Length = 209
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Query: 59 SKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSA 117
++A W + + + + +I + G PVL A V DP + IQ + DM++ M A
Sbjct: 15 NQARWQWQIRERRAMSILKIARMGHPVLLRRADPVPDPT---APEIQRLALDMIETMIDA 71
Query: 118 PGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA 177
PGVGLAAPQ+ LR+ V + EE+ +++NP+L+ D
Sbjct: 72 PGVGLAAPQVYQSLRMFVFRVPVS----RGGEEVSP--------TVLINPELEWVGDEIQ 119
Query: 178 LFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ +EGCLS+ G+R V R + + G+ DG I+ +A+G+ A ++QHE DHLDG LY
Sbjct: 120 MCWEGCLSIPGFRGEVPRAMRVRYRGIGLDGAVIEREASGFHANVIQHEYDHLDGILYPM 179
Query: 238 KM 239
+M
Sbjct: 180 RM 181
>gi|422338104|ref|ZP_16419064.1| peptide deformylase [Fusobacterium nucleatum subsp. polymorphum
F0401]
gi|355372742|gb|EHG20081.1| peptide deformylase [Fusobacterium nucleatum subsp. polymorphum
F0401]
Length = 174
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + G+ VL + A+EV+ EI E + +DDMV+ M GVGLAAPQIGV RI V
Sbjct: 4 EIKKYGEDVLKQIAKEVELNEINDE-FRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D + ++NP + ++ T F EGCLSV G VER
Sbjct: 63 DDGNGVVR------------------KVINPIIVPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ G+ I+ A + A ++QHE DHLDG L+V+K+ P R++
Sbjct: 105 KRVLLKYLNEYGEEIEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLI 155
>gi|254302996|ref|ZP_04970354.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323188|gb|EDK88438.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 174
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + G+ VL + A+EV+ EI E + +DDMV+ M GVGLAAPQIGV RI V
Sbjct: 4 EIKKYGEDVLKQIAKEVEINEINDE-FRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D + ++NP + ++ T F EGCLSV G VER
Sbjct: 63 DDGNGVVR------------------KVINPIIVPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ G+ I+ A + A ++QHE DHLDG L+V+K+ P R++
Sbjct: 105 KRVLLKYLNEYGEEIEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLI 155
>gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
Length = 145
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 23/158 (14%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL A+ VD E+ +E+ + +I +M M A GVGLAAPQIG+ R+IV++
Sbjct: 10 GDPVLRTEAKPVD--EV-TEKTEGLIKNMQDTMYDASGVGLAAPQIGISKRVIVVD---- 62
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
P L ++NP++ + S + + EGCLS+ VER + V
Sbjct: 63 ------------VGEGP---LALINPEIVESSG-SEIDEEGCLSIPNENGNVERAARVVV 106
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LD DG+ ++++A G AR+LQHE DHL+G L+VDK+
Sbjct: 107 DALDSDGREVEIEAEGLLARVLQHEIDHLEGILFVDKV 144
>gi|300691609|ref|YP_003752604.1| peptide deformylase [Ralstonia solanacearum PSI07]
gi|299078669|emb|CBJ51327.1| Peptide deformylase [Ralstonia solanacearum PSI07]
gi|344169919|emb|CCA82288.1| peptide deformylase [blood disease bacterium R229]
Length = 170
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLL 162
+ +I+DM M +A G GLAAPQIGV L++++ + E P +L
Sbjct: 21 LTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF-------GFDRSERYPDAPAVPKTVL 73
Query: 163 MILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARI 222
+NP ++ SD +EGCLSV G R VV RY + TG D+ GQ I A G+ AR+
Sbjct: 74 --INPTIEPLSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGQAIDRIAEGFHARV 131
Query: 223 LQHECDHLDGTLY 235
+QHECDHL G LY
Sbjct: 132 VQHECDHLQGILY 144
>gi|237744608|ref|ZP_04575089.1| polypeptide deformylase [Fusobacterium sp. 7_1]
gi|260494468|ref|ZP_05814598.1| peptide deformylase [Fusobacterium sp. 3_1_33]
gi|289765343|ref|ZP_06524721.1| polypeptide deformylase [Fusobacterium sp. D11]
gi|336400863|ref|ZP_08581636.1| peptide deformylase [Fusobacterium sp. 21_1A]
gi|229431837|gb|EEO42049.1| polypeptide deformylase [Fusobacterium sp. 7_1]
gi|260197630|gb|EEW95147.1| peptide deformylase [Fusobacterium sp. 3_1_33]
gi|289716898|gb|EFD80910.1| polypeptide deformylase [Fusobacterium sp. D11]
gi|336161888|gb|EGN64879.1| peptide deformylase [Fusobacterium sp. 21_1A]
Length = 174
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + G+ VL + A+EV+ EI E + +DDMV+ M GVGLAAPQ+GV R+ V
Sbjct: 4 EIKRYGEEVLKQIAKEVEFNEINDE-FRKFLDDMVETMYETDGVGLAAPQVGVSKRVFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D + ++NP + ++ T F EGCLSV G VER
Sbjct: 63 DDGNGVVR------------------KVINPIVVPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ +G+ ++ A + A ++QHE DHLDG L+V+K+ P R++
Sbjct: 105 KRVLLKYLNENGEEVEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLI 155
>gi|407893274|ref|ZP_11152304.1| polypeptide deformylase [Diplorickettsia massiliensis 20B]
Length = 169
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 87/167 (52%), Gaps = 20/167 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I+ DP L +P V + +Q +IDDM + M S G+GLAAPQI V ++
Sbjct: 3 LRTIIHLPDPRLRQPTESV---TVFDAELQALIDDMFETMYSVKGIGLAAPQIAVSKKLA 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
+ I D R L +I NP L +K AL EGCLS+ G V
Sbjct: 60 I---------------IDVSDDRSTTLCLI-NPTLVEKQGE-ALLKEGCLSIPGVYDEVP 102
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
R L ++++ DRDGQP +++A G A +QHE DHL+G L+VD + P
Sbjct: 103 RALWVKLSAQDRDGQPYELEAEGLLAHCIQHEIDHLNGRLFVDYLSP 149
>gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
Length = 167
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 92/167 (55%), Gaps = 19/167 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I+ D LH+ A+ VD + +RI+ ++DDM + M +APG+GLAA Q+ V R+I
Sbjct: 3 LLNILHYPDKRLHKVAKPVD---VVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVI 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V+ DT E K ++ F +NP++ SD ++ EGCLSV G VE
Sbjct: 60 VI-DTSE-----DKNALQVF----------INPEIVWSSDGKQVYEEGCLSVPGVYDEVE 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
R + V L RDGQP +++ G A +QHE DHL G ++V + P
Sbjct: 104 RPDHVRVRALGRDGQPFELECEGLLAVCIQHEMDHLMGRVFVQYLSP 150
>gi|300704236|ref|YP_003745839.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
gi|299071900|emb|CBJ43229.1| Peptide deformylase [Ralstonia solanacearum CFBP2957]
Length = 177
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A+ V + + +I+DM M +A G GLAAPQIGV L++++
Sbjct: 5 ILKMGDSRLLRVAQPVQ--RFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E P +L +NP ++ SD +EGCLSV G R VV RY
Sbjct: 62 ------GFDRNERYPDAPAVPKTVL--INPTIEALSDEMEDGWEGCLSVPGLRGVVPRYT 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ TG D+ G I A G+ AR++QHECDHL G LY
Sbjct: 114 RLRYTGFDQHGHAIDRIAEGFHARVVQHECDHLQGILY 151
>gi|399991312|ref|YP_006571552.1| peptide deformylase Def [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|400755849|ref|YP_006564217.1| peptide deformylase Def [Phaeobacter gallaeciensis 2.10]
gi|398655002|gb|AFO88972.1| peptide deformylase Def [Phaeobacter gallaeciensis 2.10]
gi|398655867|gb|AFO89833.1| peptide deformylase Def [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 172
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 13/142 (9%)
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
S+ ++ + DDM++ M +APG+GLAAPQIGV R+IVL+ KE + P
Sbjct: 24 SDALRTLADDMLETMYAAPGIGLAAPQIGVLDRLIVLDCVKE-------------EDGPA 70
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
L++ NP++ SD T ++ EGCLS+ A V R +EV +DRDG + G
Sbjct: 71 RPLVMFNPEVVASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRDGNAQRETFDGLW 130
Query: 220 ARILQHECDHLDGTLYVDKMVP 241
A +QHE DHL+G L++D + P
Sbjct: 131 ATCVQHEIDHLNGKLFIDYLKP 152
>gi|302549859|ref|ZP_07302201.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
gi|302467477|gb|EFL30570.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
Length = 199
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P EV + G E + +++D+ M +A GVGLAA QIG PLR+ V + +
Sbjct: 38 GDPVLHTPCAEVT--DFGPE-LARLVEDLFATMYAAQGVGLAANQIGEPLRVFVFDCPDD 94
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ L ++NP+L + EGCLS+ G A ERY V
Sbjct: 95 -------EDVR-------HLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVV 140
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G G+P+ + TG+ AR LQHE DHL+G +Y D +
Sbjct: 141 EGFTMTGEPVTLHGTGFFARCLQHEYDHLEGRIYADHL 178
>gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1]
gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1]
Length = 168
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 20/169 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP +++ DP L A+EV E + IQ IDDM+ M G+GLAA Q+ + LR
Sbjct: 2 AVLP-VLEYPDPKLRTVAKEV---EQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
I+V++ ++E + E F +NP+ D F EGCLSV GY
Sbjct: 58 IVVMDHSEE------RNEPMVF----------INPEFVVLDDEPNEFQEGCLSVPGYYEH 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
+ R ++V LDRDG+P +++ A +QHE DHLDG L+VD + P
Sbjct: 102 IYRAAKVKVKALDRDGKPFEMEVDELMAVCVQHEIDHLDGKLFVDYISP 150
>gi|389862359|ref|YP_006364599.1| peptide deformylase 1 [Modestobacter marinus]
gi|388484562|emb|CCH86100.1| Peptide deformylase 1 [Modestobacter marinus]
Length = 185
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 68 GQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQI 127
G+ P + DPVLH P V + +++++ DM M +A GVGLAA QI
Sbjct: 5 GRYDGVARPIVTYGTDPVLHRPCAPVTEFD---RALRHLLLDMFASMEAADGVGLAANQI 61
Query: 128 GVPLRIIVLE----DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGC 183
GV R+ V++ D ++ I Y +L +L+P + + + EGC
Sbjct: 62 GVDARVFVMDCPDADGEDVIGYVVNP-----------VLTVLDPVGDEPA--VEVTEEGC 108
Query: 184 LSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LSV G A +ER V G+D G P ++ATG AR LQHE DHLDGT+YVD++
Sbjct: 109 LSVPGPYAELERAFRARVDGVDAHGAPTSIEATGMAARCLQHEVDHLDGTVYVDRL 164
>gi|407801721|ref|ZP_11148564.1| peptide deformylase [Alcanivorax sp. W11-5]
gi|407024038|gb|EKE35782.1| peptide deformylase [Alcanivorax sp. W11-5]
Length = 168
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 19/163 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ DP L A+ P E + ++ +IDDM++ M A G+GLAA Q+ V R++VL
Sbjct: 5 DILEFPDPRLRTVAK---PVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLVL 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ ++E +P L+ +NP++ +D T + EGCLSV G+ VER
Sbjct: 62 DVSEER-------------DQP---LVFINPEITPLTDDTKTYDEGCLSVPGFYETVERP 105
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V L+RDG ++D G A LQHE DHLDG L+VD +
Sbjct: 106 DRVRVKALNRDGDVFEMDCDGLLAVCLQHEIDHLDGKLFVDHI 148
>gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
Length = 154
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 21/159 (13%)
Query: 81 AGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK 140
GDPVL E A+EV EI + +++ +++DMV+ M A G+GLAAPQ+G+ RIIV++
Sbjct: 9 TGDPVLREKAKEVP--EI-TPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIVIDVQD 65
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
E +L ++NP++ + EGCLS G VER +
Sbjct: 66 ET-----------------GVLKLINPEIISGEGKET-SVEGCLSFPGVAGEVERDESVT 107
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V D DG +++ A+G AR QHE DHLDG L+VDK+
Sbjct: 108 VRAQDPDGNTVEICASGLLARAFQHEIDHLDGILFVDKV 146
>gi|410664993|ref|YP_006917364.1| peptide deformylase [Simiduia agarivorans SA1 = DSM 21679]
gi|409027350|gb|AFU99634.1| peptide deformylase [Simiduia agarivorans SA1 = DSM 21679]
Length = 167
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 19/163 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ DP L A+ V E+ ++ ++ +IDDM + M PG+GLAA QI V +IIV+
Sbjct: 4 EILEFPDPRLRTKAKPV--AEV-TDAVRELIDDMFETMYDCPGIGLAATQINVHEQIIVI 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ ++E +P ++ +NP+++ T + EGCLSV G+ VER
Sbjct: 61 DISEEQ-------------NQP---MVFINPEIEVLDQETGTYDEGCLSVPGFSETVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ I V LDRDG+ ++ G A +QHE DHL+G L+VD +
Sbjct: 105 IHIRVRALDRDGKAFEIQPDGLLATCIQHEIDHLNGKLFVDHI 147
>gi|305664803|ref|YP_003861090.1| peptide deformylase [Maribacter sp. HTCC2170]
gi|88707925|gb|EAR00164.1| peptide deformylase [Maribacter sp. HTCC2170]
Length = 196
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 9/164 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV GDPVL + +E+ E ++ +I++M + M +A GVGLAAPQIG+P+R+ +++
Sbjct: 5 IVAYGDPVLRKVGKEI---EKNLPKLDELIENMWETMYNASGVGLAAPQIGLPVRLFLVD 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLL--MILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
T + +E+ +R+ D + +N K+++++ +F EGCLS+ R V R
Sbjct: 62 AT----PFAEDDELSEKERKDLDGFKKVFINAKMQEETGEDWVFNEGCLSIPEIREDVTR 117
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I +T D + + + G ARI+QHE DH++G L+ DK+
Sbjct: 118 KDTITITYFDENFKKQTENFDGILARIIQHEYDHIEGILFTDKL 161
>gi|440730993|ref|ZP_20911043.1| peptide deformylase [Xanthomonas translucens DAR61454]
gi|440375617|gb|ELQ12320.1| peptide deformylase [Xanthomonas translucens DAR61454]
Length = 170
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A +VDP ++ + Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKALQVDPADVIAPAFQRLLDDMFETMYEAPGIGLAASQVDVHQR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ ++E + Q + +NP++ ++ D + EGCLSV G A
Sbjct: 61 FMVIDVSEEKNAPQ----------------VFINPQIVQR-DGEQVHQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR G P ++ A G A +QHE DHLDG L+VD + P
Sbjct: 104 VTRAEAIVVRYLDRHGWPQELSADGLLAVCVQHEMDHLDGKLFVDYLSP 152
>gi|421483689|ref|ZP_15931262.1| peptide deformylase [Achromobacter piechaudii HLE]
gi|400197972|gb|EJO30935.1| peptide deformylase [Achromobacter piechaudii HLE]
Length = 170
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 20/167 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP LH+ A+ V E+ +RI+ ++ DM + M APGVGLAA Q+ V R
Sbjct: 2 ALLP-ILRYPDPRLHKKAKPV--AEV-DDRIRQLVRDMAETMYDAPGVGLAATQVDVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ +S S + LL ++NP++ +SD ++ EGCLSV G
Sbjct: 58 VVVID-----VSEDSNQ-----------LLTLINPEITWRSDDHKIYEEGCLSVPGVYDE 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
VER I LD DG+P + +A G A +QHE DHL+G ++V+ +
Sbjct: 102 VERASRIRCKALDIDGKPFEFEADGLLAVCVQHELDHLEGKVFVEYL 148
>gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b)
gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b)
gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
gi|335892336|pdb|3O3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 6b
gi|335892375|pdb|3PN2|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) (Crystallized In Peg-550-Mme)
gi|335892376|pdb|3PN3|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 21
gi|335892377|pdb|3PN3|B Chain B, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 21
gi|335892378|pdb|3PN4|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
(Crystallized In Peg-550-Mme)
Length = 193
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV+ DP+L + +D I E ++N++D M VM G+GL+APQ+G+ ++++V
Sbjct: 2 EIVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF 58
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + KE ++++NPK+KK SD+ F EGCLS G A V R
Sbjct: 59 NPAGE--PGEGKE------------IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+++ D G+ + + ARI QHE DHL+G L+ D+M
Sbjct: 105 QSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMT 148
>gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
8004]
gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
B100]
gi|39931165|sp|Q8P4F9.1|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
8004]
gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
Length = 170
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ ++E + Q + +NP++ + ++ EGCLSV G A
Sbjct: 61 FMVIDVSEEKDAPQ----------------VFINPEIVTRQGEQ-VYQEGCLSVPGIFAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQP ++ G A +QHE DHLDG L+VD + P
Sbjct: 104 VSRADAITVRYLDRQGQPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSP 152
>gi|30249715|ref|NP_841785.1| peptide deformylase [Nitrosomonas europaea ATCC 19718]
gi|39931084|sp|Q82TW4.1|DEF1_NITEU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|30180752|emb|CAD85666.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
Length = 176
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GDP L +PAR VD + G+ ++ ++ DM M + G GLAAPQIGV L++++
Sbjct: 5 VLKMGDPCLLQPARRVD--QFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ Y E + PF +L +NP L +++ +EGCLS+ G R +V RY
Sbjct: 62 GVEHSPRYPDAESV------PFTVL--INPVLTPLTEQMEEDWEGCLSIPGMRGLVPRYT 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G+D G I TG+ AR++QHECDHL+G LY
Sbjct: 114 RLRYQGVDAAGASIDRTVTGFHARVVQHECDHLNGILY 151
>gi|421897341|ref|ZP_16327709.1| probable polypeptide deformylase (partial sequence) protein,
partial [Ralstonia solanacearum MolK2]
gi|206588547|emb|CAQ35510.1| probable polypeptide deformylase (partial sequence) protein,
partial [Ralstonia solanacearum MolK2]
Length = 181
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A+ V + + +I+DM M +A G GLAAPQIGV L++++
Sbjct: 9 ILKMGDSRLLRVAQSVQ--RFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF- 65
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E P +L +NP ++ SD +EGCLSV G R VV RY
Sbjct: 66 ------GFDRNERYPDAPAVPKTVL--INPTIEALSDEMEDGWEGCLSVPGLRGVVPRYT 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ TG D+ G I A G+ AR++QHECDHL G LY
Sbjct: 118 RLRYTGYDQHGHAIDRVAEGFHARVVQHECDHLQGILY 155
>gi|421888324|ref|ZP_16319422.1| Peptide deformylase [Ralstonia solanacearum K60-1]
gi|378966273|emb|CCF96170.1| Peptide deformylase [Ralstonia solanacearum K60-1]
Length = 177
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A+ V + + +I+DM M +A G GLAAPQIGV L++++
Sbjct: 5 ILKMGDSRLLRVAQPVQ--RFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E P +L +NP ++ SD +EGCLSV G R VV RY
Sbjct: 62 ------GFDRNERYPDAPAVPKTVL--INPTIEALSDEMEDGWEGCLSVPGLRGVVPRYT 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ TG D+ G I A G+ AR++QHECDHL G LY
Sbjct: 114 RLRYTGFDQHGHAIDRIAEGFHARVVQHECDHLQGILY 151
>gi|375309206|ref|ZP_09774487.1| peptide deformylase [Paenibacillus sp. Aloe-11]
gi|375078515|gb|EHS56742.1| peptide deformylase [Paenibacillus sp. Aloe-11]
Length = 165
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 86/160 (53%), Gaps = 21/160 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV D VLH+ A+EV + +Q ++DDM M A GVGLAAPQ+G+ R+IV++
Sbjct: 6 IVLEPDDVLHKVAKEVTKV---TPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
E+ L+ ++NP++ + L EGCLS+ G V R
Sbjct: 63 AGDEH-----------------GLIKMINPEIVAEEGEQ-LGPEGCLSIPGLNGDVRRAE 104
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V GLDR+G+ I V ATG +R QHE DHL+G L+ D
Sbjct: 105 KVTVKGLDREGKAITVTATGLLSRAFQHEIDHLNGVLFTD 144
>gi|295696040|ref|YP_003589278.1| peptide deformylase [Kyrpidia tusciae DSM 2912]
gi|295411642|gb|ADG06134.1| peptide deformylase [Kyrpidia tusciae DSM 2912]
Length = 155
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 26/170 (15%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+L E A+ V + IQ +IDDM M +A G+GLAAPQ+G+ R+IV D E
Sbjct: 10 GDPILREKAKPVSKV---TPNIQRLIDDMADTMYNADGIGLAAPQVGILKRVIV-ADIGE 65
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLK-KKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
LL ++NP++ ++ ++T EGCLS+ G +A V R +
Sbjct: 66 ------------------GLLGLVNPEVVLEEGEQTG--PEGCLSIPGIQADVTRAHHVI 105
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVEN 249
V DR+G+P+ VDA G AR L HE DHLDG L++D++ P++ R VE
Sbjct: 106 VRAQDRNGEPLVVDAEGLLARCLLHEIDHLDGILFLDRVTDPRSIRRVET 155
>gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 185
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 18/163 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV DP+L E A VD + G I+ ++DDM + M +A GVGLAAPQI V R+IV+
Sbjct: 4 EIVIWPDPILKEVAHPVDRVDDG---IRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
DT Q+ L+ ++NP++ + + EGCLS+ G V+R+
Sbjct: 61 -DTSPRQEGQT-------------LIHLVNPEIVRGEGELT-YTEGCLSIPGEAEDVDRF 105
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V LD G+P +++A G A LQHE DHL+GT++VD +
Sbjct: 106 ARVWVRALDYHGKPFELEAEGLLAVALQHETDHLNGTVFVDHL 148
>gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcus opacus B4]
gi|254767598|sp|C1B0D9.1|DEF_RHOOB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|226239791|dbj|BAH50139.1| peptide deformylase [Rhodococcus opacus B4]
Length = 196
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 82 GDPVLHEPAREVD--PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
GDPVLHEP V P E+ +I DM M +A GVGLAA Q+G+PLR+ V
Sbjct: 10 GDPVLHEPTETVSESPAEL-----SELIADMYDTMDAANGVGLAANQVGIPLRLFV---- 60
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF------FEGCLSVNGYRAVV 193
Y E K F RR ++NP L+ S+R EGCLSV G +
Sbjct: 61 --YDCPDVDETGKPFRRRG----CVVNPVLET-SERPETMPDPDDDVEGCLSVPGEQFPT 113
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLP 253
R +VTG D DG ++++ + AR+LQHE HLDG LYVD +V + R +
Sbjct: 114 GRAEWAKVTGTDADGNAVEIEGRDFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173
Query: 254 LAEGCPKL 261
G P L
Sbjct: 174 AGWGVPGL 181
>gi|350552659|ref|ZP_08921855.1| Peptide deformylase [Thiorhodospira sibirica ATCC 700588]
gi|349793334|gb|EGZ47170.1| Peptide deformylase [Thiorhodospira sibirica ATCC 700588]
Length = 180
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 18/163 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI+ DP L + A+ P ++ IQ ++ DM + M +A G+GLAA QI VPL++IV+
Sbjct: 5 EILHFPDPRLRQKAK---PVQVVDAEIQQLVADMFETMYAAKGIGLAAVQINVPLQVIVM 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
KE + RP + +NP++ + + T + EGCLSV G+ V+R
Sbjct: 62 HLNKE-----------GEENRP---ICFINPEIIHR-EGTMPWEEGCLSVPGFYENVQRA 106
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I V LDR+G P +++A G +QHE DHL+G L+VD +
Sbjct: 107 ERIRVRALDREGNPFELNADGLLGVCIQHEMDHLNGKLFVDHL 149
>gi|261880357|ref|ZP_06006784.1| peptide deformylase [Prevotella bergensis DSM 17361]
gi|270332901|gb|EFA43687.1| peptide deformylase [Prevotella bergensis DSM 17361]
Length = 187
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 97/181 (53%), Gaps = 28/181 (15%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL- 136
I G PVL + A+++ G + +IDDM + M ++ GVGLAAPQIG +R++V+
Sbjct: 5 IYTYGHPVLRKVAQDIPTDYPG---LSQLIDDMFETMDASSGVGLAAPQIGKSVRVVVIN 61
Query: 137 -----EDTKEYISYQSKEEIKAFDRRPFDLLMILNP---KLKKKSDRTALFFEGCLSVNG 188
ED EY ++ +NP ++ KKS++ ++ EGCLSV G
Sbjct: 62 LDVLKEDYPEYADFRHA---------------YINPHIIEVDKKSEKVSME-EGCLSVPG 105
Query: 189 YRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVE 248
V RY I V LD + QP G+ AR++QHE DHL+G +YVD++ P +++
Sbjct: 106 LSEKVVRYSRIRVQYLDEELQPHDEWVEGYLARVMQHEFDHLEGVMYVDRITPLRKQLIR 165
Query: 249 N 249
N
Sbjct: 166 N 166
>gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583]
gi|421761366|ref|ZP_16198169.1| peptide deformylase [Bartonella bacilliformis INS]
gi|158513863|sp|A1UUB4.1|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583]
gi|411173150|gb|EKS43198.1| peptide deformylase [Bartonella bacilliformis INS]
Length = 182
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 11/157 (7%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L E ++ P E IQ + DDM++ M +A G+GLAA Q+G+PLR++V+ D +
Sbjct: 11 DPILREISK---PVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLVV-DVSIF 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
S + P D ++++NP++ SD + EGCLS+ GY A VER + +
Sbjct: 67 TSIFEPDA-------PQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIR 119
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+R+G+ +++A A LQHE DHL+G L++D +
Sbjct: 120 YRNREGEQKEIEADNILATCLQHEIDHLNGCLFIDHL 156
>gi|429753279|ref|ZP_19286088.1| peptide deformylase [Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429173945|gb|EKY15450.1| peptide deformylase [Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 193
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+ GDPVL + ++ P ++ +I +M MR A GVGLAAPQ+G+ +R+ V++
Sbjct: 5 IIGYGDPVLRKVGEDITPD---YPELKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVVD 61
Query: 138 DT----KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVV 193
+ + ++ + + +K F + +N K+ +++ F EGCLS+ G R V
Sbjct: 62 ASPFAEDDDLTPEEQAFLKTFQK------TFINAKITEETGDKWNFNEGCLSIPGVREDV 115
Query: 194 ERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
RY I + LD D +P + G ARI+QHE DH++G L+ DK+
Sbjct: 116 NRYKQITIEYLDEDFKPQTLTLDGLAARIVQHEYDHIEGILFTDKL 161
>gi|186686636|ref|YP_001869832.1| peptide deformylase [Nostoc punctiforme PCC 73102]
gi|186469088|gb|ACC84889.1| peptide deformylase [Nostoc punctiforme PCC 73102]
Length = 190
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 11/167 (6%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
+L I+Q G+P L + A V+ I + IQ +I+D++ + A GVG+AAPQ+ R
Sbjct: 16 TELAPIIQLGNPTLRQKAVWVE--NIQDKHIQKLIEDLIATVAKANGVGIAAPQVAQSYR 73
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ ++ ++ Y + E++ ++NPK+ S +EGCLSV G R +
Sbjct: 74 LFIVA-SRPNARYPNAPEMEP--------TAMINPKIIAHSTEVVKDWEGCLSVPGIRGL 124
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V RY IEV D G K + T + ARI QHE DHLDG ++VD++
Sbjct: 125 VPRYKSIEVEYTDCQGNLQKQELTDFIARIFQHEYDHLDGIVFVDRL 171
>gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2]
gi|122959726|sp|Q0VTE1.1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2]
Length = 168
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 20/165 (12%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKL EI++ DP L A+ P E + ++ +IDDM + M +APG+GLAA Q+ V ++
Sbjct: 2 AKL-EILEFPDPRLRTVAK---PVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQ 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+IV++ ++++ +P ++ +NP++ ++ A + EGCLSV G+
Sbjct: 58 LIVMDLSEDH-------------NKP---MVFINPQITPLTEEQAPYEEGCLSVPGFYEK 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
V R + + LDRDG +V+A A +QHE DHLDG L+VD
Sbjct: 102 VTRPARVRINALDRDGNAFEVEADELLATCIQHEMDHLDGKLFVD 146
>gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC]
gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC]
Length = 171
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 89/159 (55%), Gaps = 19/159 (11%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP LH+ A+ P ER++ I+DDM+ M A G+GLAA Q+ V RI+V++ ++E
Sbjct: 11 DPRLHKVAK---PVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVVIDVSEER 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+P L+++NP++ S T + EGCLSV G VER L +
Sbjct: 68 -------------DQP---LVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHAR 111
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
LDRDGQP ++A G A +QHE DHL G ++V+ + P
Sbjct: 112 ALDRDGQPRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSP 150
>gi|428772759|ref|YP_007164547.1| peptide deformylase [Cyanobacterium stanieri PCC 7202]
gi|428687038|gb|AFZ46898.1| peptide deformylase [Cyanobacterium stanieri PCC 7202]
Length = 163
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI+Q G+P+L E A V I S +Q ++D M+ ++ GVGLAAPQIG R+IV+
Sbjct: 3 EILQIGNPILREIASPVQ--NIDSPDVQELVDLMLGIVFERNGVGLAAPQIGYSSRVIVV 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + Y +K + ++NP + S EGCLSV G RA V RY
Sbjct: 61 A-SHPNVRYPHAPLMKPME--------MINPLIVSHSQDVEEGEEGCLSVRGKRAGVLRY 111
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
I +T +R GQ + G+ ARI+QHE DHL+G L+VD V +T +IV
Sbjct: 112 SAIALTYHNRHGQKQTREFDGFIARIVQHEIDHLNGILFVDH-VKETLKIV 161
>gi|452966644|gb|EME71653.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum sp. SO-1]
Length = 170
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 18/167 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I+ A DPVL ++ P +RI+ ++ DM++ M APG+GLAAPQIGV R
Sbjct: 2 AVLP-ILTAPDPVLKSKSK---PVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+IV++ + KEE DR P + ++NP++ SD + EGCLSV + +
Sbjct: 58 VIVMDIGR-------KEE----DRDP---IRMVNPEIVWASDEDNTYEEGCLSVPEHYSN 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V R ++V LD G+ ++ A G A ++QHE DHLDG L++D +
Sbjct: 104 VVRPAAVKVRYLDETGEKKEIHADGLLATVVQHEMDHLDGILFIDHL 150
>gi|407693961|ref|YP_006818749.1| peptide deformylase 1 [Alcanivorax dieselolei B5]
gi|407251299|gb|AFT68406.1| Peptide deformylase 1 [Alcanivorax dieselolei B5]
Length = 168
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 20/165 (12%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKL EI++ DP L A+ P E + ++ +IDDM++ M A G+GLAA Q+ V R
Sbjct: 2 AKL-EILEFPDPRLRTVAK---PVEQVDDALRKLIDDMIETMYEASGIGLAATQVNVHQR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ ++E +P L+ +NP++ + A + EGCLSV G+
Sbjct: 58 LLVIDVSEER-------------DQP---LVFINPEITPLTGDLAPYEEGCLSVPGFYEQ 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
VER + + LDRDG P +++A G A +QHE DHLDG L+VD
Sbjct: 102 VERPARVMIKALDRDGNPFEMEADGLLATCIQHEIDHLDGKLFVD 146
>gi|406917422|gb|EKD56220.1| Peptide deformylase [uncultured bacterium]
Length = 165
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
++ +Q++I +MV+ + + GVGLAAPQIG +++IV+E + + Y +KEE+ +P
Sbjct: 24 NKDLQDLILNMVETLHANKGVGLAAPQIGKNIKLIVIEF--DPVKYYNKEELTKKSNKPI 81
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
L +++NPK+ S+ EGCLS V R I++ D G+ IK+ A+ +
Sbjct: 82 PLTILVNPKIISYSNDKTTEIEGCLSCPEVEVEVIRSKKIKIISQDISGKRIKIKASDFY 141
Query: 220 ARILQHECDHLDGTLYVDKMVPK 242
AR+LQHE DHL+G L D + K
Sbjct: 142 ARVLQHEIDHLNGILITDNIKTK 164
>gi|392412437|ref|YP_006449044.1| peptide deformylase [Desulfomonile tiedjei DSM 6799]
gi|390625573|gb|AFM26780.1| peptide deformylase [Desulfomonile tiedjei DSM 6799]
Length = 174
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 83/141 (58%), Gaps = 10/141 (7%)
Query: 101 ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFD 160
ER+ + DM + M APG+GLAA Q+G LR+IV++ Y EE K + P
Sbjct: 26 ERVICLAQDMAETMYKAPGIGLAANQLGELLRLIVVDVIYPY------EESKNKKKNP-- 77
Query: 161 LLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQA 220
++ILNP++ KK +T + EGCLSV +ER I+V G+D G+P++ DA G A
Sbjct: 78 -IIILNPEIIKKEGKT-VNEEGCLSVPELGVEIERAEFIQVQGVDISGKPLRFDAEGLFA 135
Query: 221 RILQHECDHLDGTLYVDKMVP 241
R LQHE DHL+GT +D P
Sbjct: 136 RALQHEIDHLNGTTILDHASP 156
>gi|333918225|ref|YP_004491806.1| peptide deformylase [Amycolicicoccus subflavus DQS3-9A1]
gi|333480446|gb|AEF39006.1| Peptide deformylase [Amycolicicoccus subflavus DQS3-9A1]
Length = 196
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P R V E + + +++ DM M +A GVGLAA QIGV LR+ V +
Sbjct: 10 GDPVLHAPTRIV---EQPPQELADLVQDMYDTMAAAHGVGLAANQIGVDLRVFVYD---- 62
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVERY 196
++E RR + ++NP L+ + EGCLSV G + R
Sbjct: 63 ---CPDRDEDGTVVRRTGE---VINPVLETSEIPETMPDPEDDLEGCLSVPGEQFPTGRA 116
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
VTG+D G P+ V+ TG AR LQHE HLDG LYVD+++ + R +
Sbjct: 117 AWARVTGVDVQGNPVDVEGTGLFARCLQHEVGHLDGFLYVDRLIGRNARAAKKTIKKNGW 176
Query: 257 GCPKL 261
G P L
Sbjct: 177 GVPGL 181
>gi|206901011|ref|YP_002251154.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
gi|238058219|sp|B5YF46.1|DEF_DICT6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|206740114|gb|ACI19172.1| peptide deformylase [Dictyoglomus thermophilum H-6-12]
Length = 153
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 23/173 (13%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + GDP+L A++V+ + E+++ + DM++ M+ GVGLAAPQ+G LRIIV+
Sbjct: 4 EIRKVGDPILKTKAKKVEKID---EKVKELARDMIETMKFCNGVGLAAPQVGESLRIIVV 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ ++ P ++++NP++ + S L +EGCLSV G V+R
Sbjct: 61 D----------------YEDNP---IVLINPEIIEMSGEE-LDYEGCLSVPGVEVPVKRA 100
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVEN 249
I D DG+ K A G AR++QHE DHLDG L +D+ V +T + E
Sbjct: 101 ERIVFKAQDLDGRTKKYRAKGLLARVVQHEVDHLDGMLILDRAVEETLKTEEK 153
>gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C]
Length = 176
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 24/166 (14%)
Query: 83 DPVLHE---PAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
DP+L E P +DP IQ + DDM++ M +A G+GLAA Q+GVPLR++V++
Sbjct: 11 DPILREVSKPVERIDPI------IQKLADDMLETMYNAQGIGLAAVQVGVPLRMLVVD-- 62
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
I D P + L+I+NP++ SD +++ EGCLS+ Y A VER +
Sbjct: 63 -----------IHPKDA-PKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCL 110
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
+ DR+G+ ++++A A LQHE DHL+G L++D + KT R
Sbjct: 111 CMCYRDREGKQVEIEANDLLATCLQHEIDHLNGCLFIDH-ISKTKR 155
>gi|384420674|ref|YP_005630034.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463587|gb|AEQ97866.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 171
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A +V +GS + ++ DM + M +A GVGLAAPQI V L+++V
Sbjct: 4 DIIRMGDKRLLRVAPQVT--NLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+++ E P L + N +++ S+ +EGCLS+ G RAV+ RY
Sbjct: 62 -------GFEASERYPEAPAVP--LTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
I G DG PI+ +A G+ AR++QHE DHL G LY + +EN D
Sbjct: 113 RYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSR--------IENFD 159
>gi|423014486|ref|ZP_17005207.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
gi|338782489|gb|EGP46862.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
Length = 170
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 20/167 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP LH+ A+ V E+ +RI+ ++ DM M APGVGLAA Q+ V R
Sbjct: 2 ALLP-ILRYPDPRLHKKAKPV--AEV-DDRIRQLVRDMADTMYDAPGVGLAATQVDVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ +S +S + LL+++NP++ SD ++ EGCLSV G
Sbjct: 58 VVVID-----VSEESNQ-----------LLVLINPEITWHSDDYKIYEEGCLSVPGIYDE 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
VER I LD DG+P + +A G A +QHE DHL+G ++V+ +
Sbjct: 102 VERASRIRCKALDIDGKPFEFEADGLLAVCVQHELDHLEGKVFVEYL 148
>gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233]
gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233]
Length = 190
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 88/171 (51%), Gaps = 22/171 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV G+PVLH P R V E G+ + +I DM + +A G GLAA QIG R+ +
Sbjct: 6 IVICGEPVLHRPTRPVT--EFGTPELNTLIQDMFETNEAAHGAGLAANQIGDDRRLFI-- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
Y ++ RR + I+NP ++ T + EGCLSV G
Sbjct: 62 -------YDCPDQ--GSRRRGY----IINPTIETSPIPTNMPDPDDDSEGCLSVPGENFP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKT 243
R V G D DG+PI+V+ TG+ AR LQHE DHLDG LY+D+++ K
Sbjct: 109 TGRADWARVKGFDSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRLIGKN 159
>gi|347539375|ref|YP_004846800.1| peptide deformylase [Pseudogulbenkiania sp. NH8B]
gi|345642553|dbj|BAK76386.1| peptide deformylase [Pseudogulbenkiania sp. NH8B]
Length = 170
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 97 EIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDR 156
E + + ++ DM + GVGLAAPQIGVPLR+IV +Y E
Sbjct: 22 EFDTPELHELVQDMFDTQYAGNGVGLAAPQIGVPLRVIVF-------AYGGGERDPGAPA 74
Query: 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDAT 216
P +L +NP++ ++R +EGC SV G R V R+ I D G+ ++ A
Sbjct: 75 IPPTVL--INPEIHPDTERVEEDWEGCFSVPGQRGRVPRWQAIRYRAQDIQGRLVEGRAE 132
Query: 217 GWQARILQHECDHLDGTLYVDKMVP 241
G+ ARI+QHE DHL+GTL++D + P
Sbjct: 133 GFHARIIQHEVDHLNGTLFIDHLPP 157
>gi|406998745|gb|EKE16631.1| hypothetical protein ACD_10C00885G0004 [uncultured bacterium]
Length = 375
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 106 IIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMIL 165
+I D+ M A GVGLAAPQIGV L+I++ ++ E + P +L +
Sbjct: 1 MIQDLFDTMTDAGGVGLAAPQIGVGLQIVIF-------GFEKSERYPEAESVPPTIL--I 51
Query: 166 NPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQH 225
NP + D AL +EGCLS+ G R V R+ I G D GQ I G+ AR++QH
Sbjct: 52 NPHITPLGDTEALDWEGCLSLPGLRGEVPRFTRIRYQGFDPSGQVIDRTVDGFHARVVQH 111
Query: 226 ECDHLDGTLYVDKM 239
ECDHL GTLY +M
Sbjct: 112 ECDHLLGTLYPMRM 125
>gi|395783639|ref|ZP_10463488.1| peptide deformylase [Bartonella melophagi K-2C]
gi|395425761|gb|EJF91921.1| peptide deformylase [Bartonella melophagi K-2C]
Length = 174
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 94/163 (57%), Gaps = 17/163 (10%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
+ +V DP+L + ++ ++ ++ IQ + DDM++ M A G+GLAA Q+GVPLR++
Sbjct: 1 MKSLVTLPDPILRKVSKPIEHIDLA---IQKLADDMLETMYHAQGIGLAAIQVGVPLRML 57
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ A + P + L+++NP++ SD ++ EGCLS+ Y A VE
Sbjct: 58 VID--------------IAENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVE 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
R + V DR+G+ +++A A LQHE DHL+G L++D
Sbjct: 104 RPKRLRVRYSDREGKQTEIEADDLLATCLQHEIDHLNGCLFID 146
>gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
gi|444311604|ref|ZP_21147209.1| peptide deformylase [Ochrobactrum intermedium M86]
gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
gi|443485034|gb|ELT47831.1| peptide deformylase [Ochrobactrum intermedium M86]
Length = 175
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 24/178 (13%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E ++++ DM M APG+GLAA Q+G P+R++V++ KE
Sbjct: 11 DPVLRQVSK---PVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP++ +D + + EGCLS+ Y A VER I+V
Sbjct: 67 -------------GEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFRIVENLDLP 253
D DG+P ++A G A LQHE DHL+G L++D MV K F+ + + P
Sbjct: 114 YFDADGKPHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQSAP 171
>gi|323141161|ref|ZP_08076062.1| peptide deformylase [Phascolarctobacterium succinatutens YIT 12067]
gi|322414304|gb|EFY05122.1| peptide deformylase [Phascolarctobacterium succinatutens YIT 12067]
Length = 160
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 93/166 (56%), Gaps = 24/166 (14%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKL +IV AG PVL E A+ P E +++Q ++ DM + M SA GVGLAAPQ+GV R
Sbjct: 2 AKL-KIVIAGAPVLREVAQ---PVERIDKKLQRLLRDMAETMYSADGVGLAAPQVGVSKR 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V+ D E L ++NP++ K+ + L EGCLSV Y
Sbjct: 58 VVVI-DVGE------------------GLYELINPEIVKREGKV-LGSEGCLSVPDYEGE 97
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
VER +E D+ GQ + + A+G A +QHE DHLDG L++DK
Sbjct: 98 VERSEYVECEFTDKTGQRMLLSASGLLAICIQHELDHLDGILFIDK 143
>gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
Length = 165
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 20/160 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+ DPVL E A+EV + + +++DM M A GVGLAAPQIG+ R+IV++
Sbjct: 6 IVKEPDPVLREVAKEVTKF---TPNLHKLLNDMADTMYDAEGVGLAAPQIGISKRVIVVD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+E L+ ++NP + S+ EGCLS+ V R
Sbjct: 63 IGEEESG----------------LIEVVNPVIVL-SEGEQFGPEGCLSIPNLNGDVSRAD 105
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
++V G DR+G PI+VDA+G+ AR QHE DHL+G L+ D
Sbjct: 106 RVKVAGQDRNGNPIEVDASGFLARAFQHEIDHLNGILFTD 145
>gi|345011155|ref|YP_004813509.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
gi|344037504|gb|AEM83229.1| Peptide deformylase [Streptomyces violaceusniger Tu 4113]
Length = 185
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 83/158 (52%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP L P EV + + +I+DM M +A GVGLAA QIGV LR+ V + +
Sbjct: 20 GDPGLRAPCAEVTAFD---AELALLIEDMYATMYAAHGVGLAANQIGVGLRVFVFDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
D R L ++NP+L EGCLS+ G A RY +
Sbjct: 77 E------------DHR--HLGHVVNPRLAAADGVNVHGPEGCLSLPGIEAGTSRYDRAVI 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G+ G+P++++ TG+ AR LQHECDHLDG L++D++
Sbjct: 123 EGVTMTGEPVRIEGTGFFARCLQHECDHLDGGLFLDRL 160
>gi|340757101|ref|ZP_08693704.1| polypeptide deformylase [Fusobacterium varium ATCC 27725]
gi|251834368|gb|EES62931.1| polypeptide deformylase [Fusobacterium varium ATCC 27725]
Length = 173
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + GDPVL E EV E + I+ I+ +MV+ M GVGLAAPQ+G+ R++VL
Sbjct: 4 EIKKYGDPVLREKTVEV---ETVDDNIREILQNMVETMYDKKGVGLAAPQVGISKRMLVL 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ T E EE++ ++NP + ++ + EGCLS+ G VER
Sbjct: 61 DWTGE------GEELRK----------VINPVITPLTEEKIDWEEGCLSIPGIYKKVERV 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
I+V L+ G+ I + G+ A ++QHE DHL+ L+VD++ P R+V
Sbjct: 105 AKIKVDYLNEKGEKITEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMV 155
>gi|357059535|ref|ZP_09120377.1| polypeptide deformylase [Selenomonas infelix ATCC 43532]
gi|355371612|gb|EHG18956.1| polypeptide deformylase [Selenomonas infelix ATCC 43532]
Length = 156
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 90/161 (55%), Gaps = 21/161 (13%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI +AGDPVL + A +P E ++R + ++DDM + M SA GVGLAAPQ+G LRI+V+
Sbjct: 5 EIKKAGDPVLKQVA---EPIERLTKRHRQLLDDMAETMYSADGVGLAAPQVGKSLRIVVI 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ E+ LL ++NP + + + + + EGCLSV VER
Sbjct: 62 DVQDEH-----------------GLLELVNPVITMR-EGSVVDSEGCLSVPQVYGDVERA 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V DR + + A G AR +QHECDHLDG L++D
Sbjct: 104 ERVTVEYTDRRSRRRTLTAEGLLARCIQHECDHLDGRLFID 144
>gi|399908757|ref|ZP_10777309.1| peptide deformylase [Halomonas sp. KM-1]
Length = 169
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 16/147 (10%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P E + ++ ++DDM++ M A G+GLAA Q+ V R+IV+ D E S+
Sbjct: 20 PVEAVDDEVRRLVDDMLETMYDASGIGLAATQVDVHRRVIVM-DVSEERSHP-------- 70
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
L+++NP+ + L EGCLS+ Y A V R L + + LDRDG+P +++
Sbjct: 71 -------LVLINPEYTPIGEERELMSEGCLSIPEYYAEVPRALKVRLKALDRDGKPYELE 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKMVP 241
A G A +QHE DHL+G L+VD + P
Sbjct: 124 ADGLLAHCIQHEYDHLEGVLFVDYLSP 150
>gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
Length = 170
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 20/167 (11%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP LH+ A+ V E+ +RI+ ++ DM + M APGVGLAA Q+ V R
Sbjct: 2 ALLP-ILRYPDPRLHKKAKPV--AEV-DDRIRQLVRDMAETMYDAPGVGLAATQVDVHER 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ +S S + LL+++NP++ SD ++ EGCLSV G
Sbjct: 58 VVVID-----VSEDSNQ-----------LLVLINPEITWHSDDYKIYEEGCLSVPGVYDD 101
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
VER I LD DG+P + +A G A +QHE DHL+G ++V+ +
Sbjct: 102 VERASRIRCKALDVDGKPFEFEADGLLAVCVQHELDHLEGKVFVEYL 148
>gi|424789820|ref|ZP_18216441.1| Peptide deformylase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422798367|gb|EKU26473.1| Peptide deformylase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 171
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A+ V G GS + ++ DM + M +A GVGLAAPQI V L+++V
Sbjct: 4 DIIRMGDQRLLRLAQPV--GNFGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV- 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + D P + N +++ SD +EGCLS+ G RAV+ RY
Sbjct: 61 --------FGFDSNARYPDAPPVPRTALANVQIEPLSDELEDGWEGCLSIPGLRAVIPRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I GLD DG + +A G+ AR++QHE DHL G LY
Sbjct: 113 RQIRYRGLDPDGTAVVCEAEGFHARVVQHEHDHLIGRLY 151
>gi|402699296|ref|ZP_10847275.1| peptide deformylase [Pseudomonas fragi A22]
Length = 179
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A+ V + + ++DDM++ M A GVGLAAPQIGV L++++
Sbjct: 4 EILKMGDERLLRVAQPVPAEMFDTPELWQLLDDMLQTMEHAGGVGLAAPQIGVDLQMVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L +NP + +EGCLSV G R VER+
Sbjct: 64 -------GFEHSERYPDAEAVPQTIL--INPLITPLGPALEEDWEGCLSVPGLRGAVERF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G G+PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 QKIRYEGFTPKGEPIVRVAEGFHARVVQHECDHLIGRLYPSRI 157
>gi|337285623|ref|YP_004625096.1| peptide deformylase [Thermodesulfatator indicus DSM 15286]
gi|335358451|gb|AEH44132.1| peptide deformylase [Thermodesulfatator indicus DSM 15286]
Length = 167
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 18/160 (11%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL E A+ V EI E +Q++IDDM + M A G+GLAA Q+G R+ VL+
Sbjct: 10 GDPVLRETAKPVS--EIDGE-LQSLIDDMAETMYEAKGLGLAANQVGELKRLFVLD---- 62
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+K + P +LL+ +NP++ + CLS+ GY A V+R + V
Sbjct: 63 ---------LKQREGSP-ELLVFINPEIVEAEGEIVEEEG-CLSIPGYSAKVKRKAKVLV 111
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
LDR+G P +++ G A+ +QHE DHL+G LY+D + P
Sbjct: 112 KALDREGNPFEMELEGLGAKAIQHELDHLNGRLYIDYLSP 151
>gi|87303617|ref|ZP_01086396.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
gi|87281841|gb|EAQ73805.1| Formylmethionine deformylase [Synechococcus sp. WH 5701]
Length = 232
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+++ GDP L + +R V G+ + +I D+ M + G GLAAPQI VPLR+++
Sbjct: 15 VLRLGDPRLRQVSRPVT--RFGTPELLALITDLRDTMAARDGAGLAAPQIAVPLRVVIFG 72
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
T ++ P +++NP++ +EGCLSV G R V R+
Sbjct: 73 ITVNPRYPEAP---------PIPETVLINPEITPIDQACDSGWEGCLSVPGLRGQVSRWR 123
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G D +G I G+ AR++QHECDHLDG L+ D++
Sbjct: 124 RIHYRGFDAEGHLIARSVAGFHARVVQHECDHLDGVLFPDRL 165
>gi|374369436|ref|ZP_09627466.1| peptide deformylase [Cupriavidus basilensis OR16]
gi|373099004|gb|EHP40095.1| peptide deformylase [Cupriavidus basilensis OR16]
Length = 177
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 25/166 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP L + AR V + ++ ++DDM M A G GLAAPQIGV L++++
Sbjct: 4 DILKMGDPRLLQVARPV--TRFNTPELRVLVDDMFDTMDHANGAGLAAPQIGVDLQVVIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRP-------FDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
FDR P +++NP+L + +EGCLSV G
Sbjct: 62 ----------------GFDRNPRYPDAPTVPKTVLINPELTPLGEEQDEAWEGCLSVPGL 105
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
R VV R+ ++ TG D G I+ A + AR++QHECDHL G LY
Sbjct: 106 RGVVPRFTRLKYTGFDVMGARIERVAEDFHARVVQHECDHLQGILY 151
>gi|291613763|ref|YP_003523920.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
gi|291583875|gb|ADE11533.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
Length = 177
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
E+++ GD L A EV + + ++ DM + M + GVGLAAPQIGV LR+++
Sbjct: 5 EVLRMGDVRLLRKAGEVRL--FDTPELHALLKDMRETMLAMDGVGLAAPQIGVDLRVVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + Y E + +++NP L SD +EGCLSV G R +V RY
Sbjct: 63 E-VNQNPRYPDAETVPQ--------TVLINPVLTPLSDVMEEGWEGCLSVPGMRGLVPRY 113
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ G D G I +G+ AR++QHECDHLDG LY
Sbjct: 114 THLRYQGRDEYGALIDRTVSGFHARVVQHECDHLDGILY 152
>gi|53719772|ref|YP_108758.1| peptide deformylase [Burkholderia pseudomallei K96243]
gi|53723743|ref|YP_103199.1| peptide deformylase [Burkholderia mallei ATCC 23344]
gi|76809016|ref|YP_333979.1| peptide deformylase [Burkholderia pseudomallei 1710b]
gi|121601445|ref|YP_993377.1| peptide deformylase [Burkholderia mallei SAVP1]
gi|126440852|ref|YP_001059473.1| peptide deformylase [Burkholderia pseudomallei 668]
gi|126452569|ref|YP_001066757.1| peptide deformylase [Burkholderia pseudomallei 1106a]
gi|134277462|ref|ZP_01764177.1| peptide deformylase [Burkholderia pseudomallei 305]
gi|167004075|ref|ZP_02269849.1| peptide deformylase [Burkholderia mallei PRL-20]
gi|167720172|ref|ZP_02403408.1| peptide deformylase [Burkholderia pseudomallei DM98]
gi|167739177|ref|ZP_02411951.1| peptide deformylase [Burkholderia pseudomallei 14]
gi|167816388|ref|ZP_02448068.1| peptide deformylase [Burkholderia pseudomallei 91]
gi|167824767|ref|ZP_02456238.1| peptide deformylase [Burkholderia pseudomallei 9]
gi|167846298|ref|ZP_02471806.1| peptide deformylase [Burkholderia pseudomallei B7210]
gi|167894880|ref|ZP_02482282.1| peptide deformylase [Burkholderia pseudomallei 7894]
gi|167903269|ref|ZP_02490474.1| peptide deformylase [Burkholderia pseudomallei NCTC 13177]
gi|167911509|ref|ZP_02498600.1| peptide deformylase [Burkholderia pseudomallei 112]
gi|167919519|ref|ZP_02506610.1| peptide deformylase [Burkholderia pseudomallei BCC215]
gi|217421605|ref|ZP_03453109.1| peptide deformylase [Burkholderia pseudomallei 576]
gi|237812813|ref|YP_002897264.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
gi|238563756|ref|ZP_00438343.2| peptide deformylase [Burkholderia mallei GB8 horse 4]
gi|242316254|ref|ZP_04815270.1| peptide deformylase [Burkholderia pseudomallei 1106b]
gi|254178715|ref|ZP_04885370.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
gi|254179317|ref|ZP_04885916.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
gi|254189297|ref|ZP_04895808.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
gi|254197856|ref|ZP_04904278.1| polypeptide deformylase [Burkholderia pseudomallei S13]
gi|254200152|ref|ZP_04906518.1| peptide deformylase [Burkholderia mallei FMH]
gi|254206490|ref|ZP_04912842.1| peptide deformylase [Burkholderia mallei JHU]
gi|254258903|ref|ZP_04949957.1| peptide deformylase [Burkholderia pseudomallei 1710a]
gi|254297203|ref|ZP_04964656.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
gi|386861324|ref|YP_006274273.1| peptide deformylase [Burkholderia pseudomallei 1026b]
gi|403519186|ref|YP_006653320.1| peptide deformylase [Burkholderia pseudomallei BPC006]
gi|418382733|ref|ZP_12966667.1| peptide deformylase [Burkholderia pseudomallei 354a]
gi|418538482|ref|ZP_13104091.1| peptide deformylase [Burkholderia pseudomallei 1026a]
gi|418544855|ref|ZP_13110125.1| peptide deformylase [Burkholderia pseudomallei 1258a]
gi|418551657|ref|ZP_13116565.1| peptide deformylase [Burkholderia pseudomallei 1258b]
gi|418557701|ref|ZP_13122289.1| peptide deformylase [Burkholderia pseudomallei 354e]
gi|52210186|emb|CAH36165.1| putative deformylase [Burkholderia pseudomallei K96243]
gi|52427166|gb|AAU47759.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
gi|76578469|gb|ABA47944.1| polypeptide deformylase [Burkholderia pseudomallei 1710b]
gi|121230255|gb|ABM52773.1| polypeptide deformylase [Burkholderia mallei SAVP1]
gi|126220345|gb|ABN83851.1| peptide deformylase [Burkholderia pseudomallei 668]
gi|126226211|gb|ABN89751.1| peptide deformylase [Burkholderia pseudomallei 1106a]
gi|134251112|gb|EBA51191.1| peptide deformylase [Burkholderia pseudomallei 305]
gi|147749748|gb|EDK56822.1| peptide deformylase [Burkholderia mallei FMH]
gi|147753933|gb|EDK60998.1| peptide deformylase [Burkholderia mallei JHU]
gi|157806966|gb|EDO84136.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
gi|157936976|gb|EDO92646.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
gi|160699754|gb|EDP89724.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
gi|169654597|gb|EDS87290.1| polypeptide deformylase [Burkholderia pseudomallei S13]
gi|184209857|gb|EDU06900.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
gi|217395347|gb|EEC35365.1| peptide deformylase [Burkholderia pseudomallei 576]
gi|237504956|gb|ACQ97274.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
gi|238520038|gb|EEP83502.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
gi|242139493|gb|EES25895.1| peptide deformylase [Burkholderia pseudomallei 1106b]
gi|243060514|gb|EES42700.1| peptide deformylase [Burkholderia mallei PRL-20]
gi|254217592|gb|EET06976.1| peptide deformylase [Burkholderia pseudomallei 1710a]
gi|385347210|gb|EIF53873.1| peptide deformylase [Burkholderia pseudomallei 1258b]
gi|385347768|gb|EIF54418.1| peptide deformylase [Burkholderia pseudomallei 1026a]
gi|385347883|gb|EIF54529.1| peptide deformylase [Burkholderia pseudomallei 1258a]
gi|385364358|gb|EIF70075.1| peptide deformylase [Burkholderia pseudomallei 354e]
gi|385377075|gb|EIF81695.1| peptide deformylase [Burkholderia pseudomallei 354a]
gi|385658452|gb|AFI65875.1| peptide deformylase [Burkholderia pseudomallei 1026b]
gi|403074829|gb|AFR16409.1| peptide deformylase [Burkholderia pseudomallei BPC006]
Length = 177
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L E AR V+ + + ++ DM + M A G GLAAPQIGV L++I+
Sbjct: 4 EILKMGDPRLLEVARPVE--AFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E + P +++NP ++ +EGCLSV G R VV RY
Sbjct: 62 -------GFGSSERYP--EAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ +G D+ G ++ A G+ AR++QHE DHL G LY
Sbjct: 113 RRVRYSGFDQYGAKLERIAEGFHARVVQHEYDHLIGKLY 151
>gi|389580158|ref|ZP_10170185.1| peptide deformylase [Desulfobacter postgatei 2ac9]
gi|389401793|gb|EIM64015.1| peptide deformylase [Desulfobacter postgatei 2ac9]
Length = 176
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 10/146 (6%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P E E ++ ++DM + M GVGLAAPQ+GV R+IV Y + + E+
Sbjct: 20 PVETIDEELKTFVEDMGETMFHDSGVGLAAPQVGVNRRVIV------YDPHAADEQKDPE 73
Query: 155 DRRPFDLLMILNPKLKKKSDRTALF-FEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKV 213
D+ + ++NP++ KS T + EGCLSV YRA V R+ + V ++ DG+ I+
Sbjct: 74 DKT---FIALINPEILSKSKETFISEQEGCLSVVDYRADVRRHASVTVRAMNIDGETIEF 130
Query: 214 DATGWQARILQHECDHLDGTLYVDKM 239
+A G + I+QHE DHLDG L++D++
Sbjct: 131 EAHGLMSVIMQHEIDHLDGILFIDRI 156
>gi|291449876|ref|ZP_06589266.1| polypetide deformylase [Streptomyces albus J1074]
gi|291352825|gb|EFE79727.1| polypetide deformylase [Streptomyces albus J1074]
Length = 206
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 25/181 (13%)
Query: 69 QNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIG 128
+ ++ + I G+ +LH P REV G+ + ++DDM ++A G GLAA Q+G
Sbjct: 15 EAERGAVRRITVVGEEILHRPCREVTEDAFGTAGLAALVDDMFATNQAAEGAGLAANQVG 74
Query: 129 VPLRIIVLEDTKEY-------ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFE 181
V LR+ V + T ++ ++ +++ A DRR ++ P E
Sbjct: 75 VDLRLFVWDITDDWGVRHVGHLANPVLDDVPATDRR-----LVEEP-------------E 116
Query: 182 GCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
GCLSV G VV R V G D+DG+P+ ++ G+ AR LQHE DHL G LY+D++
Sbjct: 117 GCLSVPGPYRVVPRLDRAVVRGRDKDGRPLVIEGRGYFARCLQHETDHLRGHLYLDRLAR 176
Query: 242 K 242
+
Sbjct: 177 R 177
>gi|333978751|ref|YP_004516696.1| peptide deformylase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822232|gb|AEG14895.1| Peptide deformylase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 154
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 25/165 (15%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV GD VL E AR P + I ++D++ M A GVGLAAPQIGV R+IV+
Sbjct: 5 KIVLYGDEVLREKAR---PVAKITPNIHKLLDNLRDTMYHARGVGLAAPQIGVSKRVIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKL-KKKSDRTALFFEGCLSVNGYRAVVER 195
DT E L+ ++NP++ + + + T EGCLS+ V R
Sbjct: 62 -DTGE------------------GLIELINPEVVEARGEETDT--EGCLSLPNVVGEVTR 100
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
++ V GLDR G P++ A G+QAR LQHE DHLDG L++D+ V
Sbjct: 101 AAEVRVKGLDRYGNPVEHHARGFQARALQHEIDHLDGILFIDRAV 145
>gi|254414456|ref|ZP_05028222.1| peptide deformylase [Coleofasciculus chthonoplastes PCC 7420]
gi|196178686|gb|EDX73684.1| peptide deformylase [Coleofasciculus chthonoplastes PCC 7420]
Length = 177
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI Q G+P+L + A+ +D + E IQ +I+ + +A GVG+AAPQI R+ ++
Sbjct: 6 EIAQLGNPILRQLAQPID--NVQDESIQKLIEALKAKAVAANGVGIAAPQISQSCRLFIV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
S+ + + + ++NP++ SD+ +EGCLS+ G R +V RY
Sbjct: 64 A---------SRPNPRYPNAPTMEPTAMINPQIVAHSDQVVKGWEGCLSIPGIRGLVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
IEV +++G+P + T + ARI+QHE DHL+G ++VD++
Sbjct: 115 QAIEVEYTNQEGKPQRQQLTDFVARIVQHEYDHLNGIVFVDRV 157
>gi|418296812|ref|ZP_12908655.1| peptide deformylase [Agrobacterium tumefaciens CCNWGS0286]
gi|355538987|gb|EHH08229.1| peptide deformylase [Agrobacterium tumefaciens CCNWGS0286]
Length = 170
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E + + DDM++ M APG+GLAA QIGV R++V++ +E
Sbjct: 11 DPVLRQQSK---PIEKVDAEVLRLADDMLETMYDAPGIGLAAIQIGVARRMLVIDVARE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ P ++ +NP++ K SD + + EGCLS+ Y A VER + V
Sbjct: 67 ----------GEEKTP---IVFINPEILKVSDDVSTYEEGCLSIPDYYAEVERPASLTVQ 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ RDG+ V+A G A LQHE DHL+G L++D +
Sbjct: 114 YVGRDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHI 150
>gi|395780427|ref|ZP_10460889.1| peptide deformylase [Bartonella washoensis 085-0475]
gi|423711978|ref|ZP_17686283.1| peptide deformylase [Bartonella washoensis Sb944nv]
gi|395412826|gb|EJF79306.1| peptide deformylase [Bartonella washoensis Sb944nv]
gi|395418773|gb|EJF85090.1| peptide deformylase [Bartonella washoensis 085-0475]
Length = 178
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 17/162 (10%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V DP+L E +R P E +Q + DDM++ M +A GVGLAA Q+G+PLR++V++
Sbjct: 6 LVTLPDPILREVSR---PVEHVDSTLQKLADDMLETMYNAQGVGLAAIQVGLPLRMLVID 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + P + L+I+NP++ SD + EGCLS+ Y A VER
Sbjct: 63 VSR--------------NDAPKNPLVIINPEVLWLSDERNVHKEGCLSIPEYFAEVERPK 108
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V DR+G+ I+++A A LQHE DHL+G L++D +
Sbjct: 109 RLCVRYSDREGKHIEIEADDLLATCLQHEIDHLNGRLFIDHI 150
>gi|418774075|ref|ZP_13330046.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418802082|ref|ZP_13357713.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|392751577|gb|EJA08525.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392778585|gb|EJA35257.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 169
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 22/159 (13%)
Query: 97 EIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDR 156
E+ +E IQ I+DDM + M + G+GLAA Q+ + RIIV++ ++ D
Sbjct: 23 EVNAE-IQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENR------------DE 69
Query: 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDAT 216
R L+++NP+L++KS T + EGCLS+ RA+V R +++ LDRDG P +++A
Sbjct: 70 R----LVLINPELQEKSGETGIE-EGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEAD 124
Query: 217 GWQARILQHECDHLDGTLYVDKMVP-KTFRI---VENLD 251
G A +QHE DHL G L++D + P K RI VE LD
Sbjct: 125 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLD 163
>gi|330445859|ref|ZP_08309511.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490050|dbj|GAA04008.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 173
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 20/166 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVM-RSAPGVGLAAPQIGVPLRIIV 135
EI+ +P L A EV ++ +E IQ +IDDM++ M + G+GLAAPQ+G IIV
Sbjct: 5 EILTEPNPKLRVQAEEV--TDVKAEHIQTLIDDMLQTMYETGNGIGLAAPQVGRKESIIV 62
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
++ ++E + E + F +NPK+ + + + EGCLSV Y A VER
Sbjct: 63 IDLSEE------RNEPQVF----------VNPKIVR-GENPVVGQEGCLSVPDYYADVER 105
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
+ IE+T LDRDG I ++ + A LQHE DHL G L++D + P
Sbjct: 106 FEKIELTALDRDGNDIHLERDDFLAIALQHEIDHLKGILFIDYLSP 151
>gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
gi|158513291|sp|A5ESQ7.1|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
Length = 175
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 10/145 (6%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P E + I+ ++DDM + M APG+GLAA Q+ PLR+I ++ K ++K E + F
Sbjct: 20 PVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVITMDLAKPDAGGETKREPRVF 79
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP++ KSD +++ EGCLS+ Y VER + V D DG + D
Sbjct: 80 ----------INPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTDLDGVLREED 129
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHE DHL+G L++D +
Sbjct: 130 AEGLYATCIQHEIDHLNGVLFIDYL 154
>gi|83719851|ref|YP_442547.1| peptide deformylase [Burkholderia thailandensis E264]
gi|167581474|ref|ZP_02374348.1| peptide deformylase [Burkholderia thailandensis TXDOH]
gi|167619583|ref|ZP_02388214.1| peptide deformylase [Burkholderia thailandensis Bt4]
gi|257138756|ref|ZP_05587018.1| peptide deformylase [Burkholderia thailandensis E264]
gi|83653676|gb|ABC37739.1| polypeptide deformylase [Burkholderia thailandensis E264]
Length = 177
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L E AR V+ + + ++ DM + M A G GLAAPQIGV L++I+
Sbjct: 4 EILKMGDPRLLEVARPVE--SFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVIIF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E + P +++NP ++ +EGCLSV G R VV RY
Sbjct: 62 -------GFGSSERYP--EAPPVPETVLVNPSVEYLPPDMEDGWEGCLSVPGLRGVVSRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ +G D+ G ++ A G+ AR++QHE DHL G LY
Sbjct: 113 RRVRYSGFDQYGAKLERIAEGFHARVVQHEYDHLIGKLY 151
>gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
Length = 172
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 13/142 (9%)
Query: 100 SERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPF 159
S+ ++ + DDM++ M APG+GLAAPQIGV R+IVL+ KE + P
Sbjct: 24 SDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVLDCVKE-------------ESAPA 70
Query: 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQ 219
L++ NP++ SD T ++ EGCLS+ A V R ++V +DRDG+ G
Sbjct: 71 RPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGKLQSETFDGLW 130
Query: 220 ARILQHECDHLDGTLYVDKMVP 241
A +QHE DHLDG L++D + P
Sbjct: 131 ATCVQHEIDHLDGKLFIDYLKP 152
>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
Length = 273
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ DP+L + +D I E ++N++D M VM G+GL+APQ+G+ ++++V
Sbjct: 82 KIVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF 138
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + KE ++++NPK+KK SD+ F EGCLS G A V R
Sbjct: 139 NPAGE--PGEGKE------------IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRP 184
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+++ D G+ + + ARI QHE DHL+G L+ D+M
Sbjct: 185 QSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMT 228
>gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
Length = 170
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 88/168 (52%), Gaps = 25/168 (14%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL--EDT 139
GDPVL +E P E ++ I+ IID MV+ M A GVGLAAPQIGV RI V+ ED
Sbjct: 9 GDPVLR---KEALPVEDVNDEIREIIDSMVESMHEAGGVGLAAPQIGVSKRIFVIDIEDG 65
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDI 199
K + ++NP+ + S EGCLSV G V+R +
Sbjct: 66 K--------------------IRKVINPEFLEFSKEIVEHEEGCLSVPGVYKKVKRPARV 105
Query: 200 EVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
++ + +G+ + +A G +R QHE DHLD TL+VDK+ P R+V
Sbjct: 106 KIKYTNENGEKVIEEAEGLLSRAFQHEADHLDATLFVDKLSPVAKRMV 153
>gi|207743249|ref|YP_002259641.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
[Ralstonia solanacearum IPO1609]
gi|206594646|emb|CAQ61573.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein
[Ralstonia solanacearum IPO1609]
Length = 177
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A+ V + + +I+DM M +A G GLAAPQIGV L++++
Sbjct: 5 ILKMGDSRLLRVAQPVQ--RFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E P +L +NP ++ SD +EGCLSV G R VV RY
Sbjct: 62 ------GFDRNERYPDAPAVPKTVL--INPTIEALSDEMEDGWEGCLSVPGLRGVVPRYT 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ TG D+ G I A G+ AR++QHECDHL G LY
Sbjct: 114 RLRYTGYDQHGHAIDRIAEGFHARVVQHECDHLQGILY 151
>gi|423126056|ref|ZP_17113735.1| peptide deformylase [Klebsiella oxytoca 10-5250]
gi|376397628|gb|EHT10258.1| peptide deformylase [Klebsiella oxytoca 10-5250]
Length = 169
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 22/159 (13%)
Query: 97 EIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDR 156
E+ +E IQ I+DDM + M + G+GLAA Q+ + RIIV++ +S +E+
Sbjct: 23 EVNTE-IQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID-----VSENREEQ------ 70
Query: 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDAT 216
L+++NP+L +KS T + EGCLS+ RA+V R +++ LDRDG+P +++A
Sbjct: 71 -----LVLINPELLEKSGETGIE-EGCLSIPEQRALVPRAEKVKIRALDRDGKPYELEAD 124
Query: 217 GWQARILQHECDHLDGTLYVDKMVP-KTFRI---VENLD 251
G A +QHE DHL G L++D + P K RI VE LD
Sbjct: 125 GLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLD 163
>gi|421852924|ref|ZP_16285607.1| peptide deformylase [Acetobacter pasteurianus subsp. pasteurianus
LMG 1262 = NBRC 106471]
gi|371478923|dbj|GAB30810.1| peptide deformylase [Acetobacter pasteurianus subsp. pasteurianus
LMG 1262 = NBRC 106471]
Length = 174
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 78 IVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
I + G PVL +PA+EV DP + IQ +I DM + + + GVGLAAPQ+ V R+ +
Sbjct: 6 IARMGHPVLRQPAQEVPDPT---APDIQRLIADMRETLEKSGGVGLAAPQVFVSQRLFL- 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y ++ E + D + ++NP LK D L EGCLS+ R V RY
Sbjct: 62 -----YSVPLARSEGE--DDPSLPVQALINPVLKPVDDEKLLRTEGCLSLPDLRGEVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D+ GQ ++ ATG++A ++QHE DHLDG LY +M
Sbjct: 115 KRIWYAGFDQHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMT 158
>gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614]
gi|118437801|gb|EAV44437.1| peptide deformylase [Labrenzia aggregata IAM 12614]
Length = 202
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 23/165 (13%)
Query: 78 IVQAGDPVLHE---PAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
I+ DPVL E P VD + ++ + DDM++ M APG+GLAA QIG+ RI
Sbjct: 36 IITIPDPVLREVCAPVATVD------DDVRKLADDMLETMYDAPGIGLAASQIGLLQRIF 89
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
VL+ K D P + ++ +NPK+ SD +++ EGCLS+ Y VE
Sbjct: 90 VLDVAK--------------DDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVE 135
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R ++ V L+R+G ++ A G A +QHE DHL+G L++D +
Sbjct: 136 RPAEVTVQFLNREGAEQEIKADGLLATCIQHELDHLNGKLFIDYL 180
>gi|436838528|ref|YP_007323744.1| peptide deformylase [Fibrella aestuarina BUZ 2]
gi|384069941|emb|CCH03151.1| peptide deformylase [Fibrella aestuarina BUZ 2]
Length = 192
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 16/170 (9%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV GDPVL + A+E++ G++ ++ + D+M + M +A GVGLAAPQ+G LR+ V++
Sbjct: 5 IVAYGDPVLRKRAKEIEKGQVD---VKTLADNMFETMYAASGVGLAAPQVGQSLRLFVVD 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMI------LNPKLKKKSDRTALFFEGCLSVNGYRA 191
T E + D FD ++ +NP++ ++ F EGCLS+ G R
Sbjct: 62 GT-------PMNEDETPDDDEFDPSLVGFKKVFINPEILEEDGDEWAFEEGCLSIPGIRN 114
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I++ +D D + G ARI+QHE DHLDG L+ D M P
Sbjct: 115 DVYRPEFIKIRYVDLDWNEHVEEYDGIAARIIQHEYDHLDGKLFTDYMSP 164
>gi|427732643|ref|YP_007078880.1| peptide deformylase [Nostoc sp. PCC 7524]
gi|427368562|gb|AFY51283.1| peptide deformylase [Nostoc sp. PCC 7524]
Length = 177
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 12/167 (7%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I+ G+P L A V+ +I + Q +IDD++ A GVG+AAPQ+ R
Sbjct: 3 ASLP-IIHVGNPTLRHQAAVVE--DIHAPAFQQLIDDLIATAMQANGVGIAAPQVAQSYR 59
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+ ++ ++ Y + E+K ++NPK+ S +EGCLSV G R +
Sbjct: 60 LFIVA-SRPNPRYPNAPEMKP--------TAMINPKIVAHSKEVVKGWEGCLSVPGMRGL 110
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V RY I V +R GQ + + T + ARI QHE DHL+G L++D++
Sbjct: 111 VPRYQAIAVEYTNRHGQLQQQELTDFVARIFQHEFDHLNGVLFIDRI 157
>gi|15241461|ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|30684999|ref|NP_850821.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|39932734|sp|Q9FUZ2.2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2;
Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
deformylase; Flags: Precursor
gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana]
Length = 273
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 17/164 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ DP+L + +D I E ++N++D M VM G+GL+APQ+G+ ++++V
Sbjct: 82 KIVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVF 138
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + KE ++++NPK+KK SD+ F EGCLS G A V R
Sbjct: 139 NPAGE--PGEGKE------------IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRP 184
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+++ D G+ + + ARI QHE DHL+G L+ D+M
Sbjct: 185 QSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMT 228
>gi|395782233|ref|ZP_10462637.1| peptide deformylase [Bartonella rattimassiliensis 15908]
gi|395419172|gb|EJF85473.1| peptide deformylase [Bartonella rattimassiliensis 15908]
Length = 178
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 97/162 (59%), Gaps = 15/162 (9%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V DP+L E ++ P E ++ + DDM++ M +A GVGLAA QIG+PLR++V++
Sbjct: 6 LVTLPDPILREVSK---PVEQFDSALKELADDMLRTMYNAKGVGLAAIQIGIPLRMLVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+S S++ K +P L+I+NP++ SD ++ EGCLS+ Y A VER
Sbjct: 63 -----VSGNSEDNQK----KP---LVIINPEILWLSDERNIYQEGCLSIPDYFAEVERPK 110
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + DR+G+ +++A A LQHE DHL+G L++D +
Sbjct: 111 RLCIRYQDREGKHTEIEADDLLATCLQHEIDHLNGHLFIDYL 152
>gi|395495802|ref|ZP_10427381.1| peptide deformylase [Pseudomonas sp. PAMC 25886]
Length = 168
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 84/145 (57%), Gaps = 16/145 (11%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P + +++ ++DDM + M APG+GLAA Q+ V R++V++ ++
Sbjct: 20 PVAVVDAKVRQLVDDMFETMYEAPGIGLAATQVNVHQRVVVMDLSE-------------- 65
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
DR + L+ +NP+ + +D + EGCLSV + V+R +++ LDRDG+P ++
Sbjct: 66 DRS--EPLVFINPEFETLTDEMGQYQEGCLSVPDFYENVDRPQRVKIKALDRDGKPFEMI 123
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHECDHL+G L+VD +
Sbjct: 124 AEGLLAVCIQHECDHLNGKLFVDYL 148
>gi|313894829|ref|ZP_07828389.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
gi|402303054|ref|ZP_10822152.1| peptide deformylase [Selenomonas sp. FOBRC9]
gi|312976510|gb|EFR41965.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430]
gi|400379284|gb|EJP32128.1| peptide deformylase [Selenomonas sp. FOBRC9]
Length = 156
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 89/161 (55%), Gaps = 21/161 (13%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI +AGDPVL + A +D ++R + ++DDM + M SA GVGLAAPQIG +R++V+
Sbjct: 5 EIKKAGDPVLKQVAEPIDRL---TKRHRQLLDDMAETMYSANGVGLAAPQIGKSIRMVVI 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ E+ LL ++NP + + + T + EGCLSV VER
Sbjct: 62 DVEDEH-----------------GLLELINPVITMR-EGTVVGSEGCLSVPKMFGDVERA 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V DR + + A G AR +QHECDHLDG L++D
Sbjct: 104 ARVTVEYTDRRSRRRSLTAEGLLARCIQHECDHLDGRLFID 144
>gi|386838739|ref|YP_006243797.1| polypeptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374099040|gb|AEY87924.1| polypeptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451792031|gb|AGF62080.1| polypeptide deformylase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 194
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 23/162 (14%)
Query: 82 GDPVLHEPAREV---DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLED 138
GD VL EP R+V PG + +++D+ M +A GVGLAA QIGV LR+ V +
Sbjct: 30 GDAVLREPCRDVTDFGPG------LAALVEDLFATMYAAQGVGLAANQIGVGLRVFVYDC 83
Query: 139 TKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLD 198
+ E+++ L ++NP+L + EGCLS+ G A ERY
Sbjct: 84 PDD-------EDVR-------HLGHVVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDH 129
Query: 199 IEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
V GL G P+ + TG+ AR LQHECDHL+G +Y D++
Sbjct: 130 AVVEGLTLTGDPVTLHGTGFFARCLQHECDHLEGRVYADRLT 171
>gi|421856361|ref|ZP_16288728.1| peptide deformylase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|403188300|dbj|GAB74929.1| peptide deformylase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 159
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 9/162 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q G+ VL A EV E +E ++ + M M GVG+AAPQ+ + RII++
Sbjct: 7 VAQRGEKVLTLKAAEVSENEFNTEWLRQLAQAMHTTMLEQNGVGIAAPQVYISKRIIIV- 65
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
S+ ++ D + ++++NP++ + S T + EGCLSV R VER
Sbjct: 66 --------ASRSNLRYSDAPEMEAVVMVNPEILEFSRETCMGEEGCLSVPDVRGTVERAE 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ L +G+P++ G+ ARI+QHE DHL+G L+V+++
Sbjct: 118 TVKLRYLTLEGEPVETIYKGFPARIIQHEIDHLNGILFVERL 159
>gi|282881719|ref|ZP_06290382.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1]
gi|281304478|gb|EFA96575.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1]
Length = 187
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
G PVL + A+++ P E +Q +I DM + M ++ GVGLAAPQIG +R++V++
Sbjct: 9 GQPVLRKVAQDITPA---YENLQQLIADMFETMDASDGVGLAAPQIGKSIRVVVID---- 61
Query: 142 YISYQSKE--EIKAFDRRPFDLLMILNPKLKKKSDRT--ALFFEGCLSVNGYRAVVERYL 197
++ S E E K F RR + +NP + + + + + EGCLS+ G V R+
Sbjct: 62 -LNVLSDELPEYKDF-RRAY-----INPHIIEIDEDSPVSTMEEGCLSIPGIHESVTRHT 114
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEG 257
I V +D D QP G+ AR++QHE DHL+G ++VD++ P ++++N + +G
Sbjct: 115 RIRVQYMDSDFQPHDEWVEGYLARVMQHEFDHLEGKMFVDRVSPFRKQLIKNKLKAMTQG 174
>gi|374607063|ref|ZP_09679869.1| peptide deformylase [Paenibacillus dendritiformis C454]
gi|374387335|gb|EHQ58851.1| peptide deformylase [Paenibacillus dendritiformis C454]
Length = 160
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 86/160 (53%), Gaps = 21/160 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV DPVLH+ A+EV + I +++DM M A GVGLAAPQIG+ R+IV++
Sbjct: 6 IVHEPDPVLHQVAKEVTKL---TPNIHKLLNDMADTMYHAEGVGLAAPQIGILKRVIVVD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
E+ L+ ++NP + K ++ L EGCLS+ G V R+
Sbjct: 63 VGDEH-----------------GLIEMINPVILK-AEGEQLGPEGCLSIPGLNGDVRRHQ 104
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
I V GLDR G V+A+ + AR QHE DHL+G L+ +
Sbjct: 105 HITVQGLDRHGNTFTVEASDFLARAFQHEIDHLNGILFTE 144
>gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586]
gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586]
Length = 169
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 19/156 (12%)
Query: 97 EIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDR 156
E+ +E IQ I+DDM M G+GLAA Q+ + RIIV++ ++E D+
Sbjct: 23 EVNAE-IQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIVIDVSEER------------DQ 69
Query: 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDAT 216
R L+++NP+L +KS T + EGCLS+ RA+V R ++V LDR+G+P ++DA
Sbjct: 70 R----LVLINPELLEKSGDTGIE-EGCLSIPETRALVPRAEHVKVRALDREGKPFELDAD 124
Query: 217 GWQARILQHECDHLDGTLYVDKMVP-KTFRIVENLD 251
G A +QHE DHL G L+VD + P K RI + L+
Sbjct: 125 GLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLE 160
>gi|189461816|ref|ZP_03010601.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136]
gi|189431410|gb|EDV00395.1| peptide deformylase [Bacteroides coprocola DSM 17136]
Length = 184
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 12/162 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G PVL + A ++ P ++ +I +M + M A GVGLAAPQ+G+P+R++V+
Sbjct: 5 IYVYGQPVLRQEAEDITPD---YPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVIN 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ + E K F RR + +NP + + + EGCLS+ G V+R
Sbjct: 62 LD---VLSEDMPEFKDF-RRAY-----INPHILETGEELVSMEEGCLSLPGIHEAVKRPD 112
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I VT LD D P G+ AR++QHE DHLDGT+++D +
Sbjct: 113 KIHVTYLDEDMNPHDEWVEGYLARVMQHEFDHLDGTMFIDHL 154
>gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002]
gi|238689048|sp|B1XJP0.1|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002]
Length = 187
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 92/158 (58%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GD VL + A+ + + + I+ + +M++ M S+ G+GLAAPQ+GV R+IV++ E
Sbjct: 23 GDKVLRQKAKRIAKVD---DEIRTLAKEMLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPE 79
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+ L+++NP++KK + F EGCLS+ G V R +IEV
Sbjct: 80 NPANAP--------------LVLINPEIKKFGQQLCPFEEGCLSIPGVHLDVIRPDEIEV 125
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ D G+P ++ A+G +R++QHE DHLDG ++VD++
Sbjct: 126 SYRDEQGKPKRIKASGLLSRVIQHEIDHLDGVMFVDRV 163
>gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254777164|ref|ZP_05218680.1| peptide deformylase [Mycobacterium avium subsp. avium ATCC 25291]
gi|417748113|ref|ZP_12396562.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
S397]
gi|440779384|ref|ZP_20958106.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
S5]
gi|81700308|sp|Q73T03.1|DEF_MYCPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|41398849|gb|AAS06468.1| Def [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336460340|gb|EGO39240.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
S397]
gi|436720177|gb|ELP44475.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis
S5]
Length = 197
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 89/171 (52%), Gaps = 19/171 (11%)
Query: 82 GDPVLHEPAREVDPGEIGS--ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
GDPVLH P + V G+ GS + +I DM M +A GVGLAA QIGV LR+ V
Sbjct: 10 GDPVLHTPTQPVPVGDDGSLPADLGKLIADMYDTMDAAHGVGLAANQIGVGLRVFV---- 65
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVE 194
Y ++ +RR +++NP L+ + EGCLSV G
Sbjct: 66 -----YDCADDRGLTERR---RGVVVNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTG 117
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
R VTGLD DG P+ ++ G AR+LQHE HLDG LY+D+++ + R
Sbjct: 118 RASWARVTGLDADGNPVSIEGHGLFARMLQHETGHLDGFLYLDRLIGRYAR 168
>gi|392952183|ref|ZP_10317738.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
gi|391861145|gb|EIT71673.1| peptide deformylase [Hydrocarboniphaga effusa AP103]
Length = 168
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 22/176 (12%)
Query: 77 EIVQAGDPVLHEPAREV-DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
EI+ DP L AR V D G +Q +IDDM + M +APGVGLAA Q+G+ RI V
Sbjct: 5 EILHHPDPRLRIKARPVVDFGP----SLQKLIDDMFETMYAAPGVGLAATQVGIDQRIAV 60
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
++ E +P D +++NP + + SD+ + EGCLSV V+R
Sbjct: 61 MDAGAE--------------GKP-DPQVLINPVIVEASDKQEME-EGCLSVPDVADKVQR 104
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP-KTFRIVENL 250
Y +++ DR+G P +V+ G +A+ +QHE DHLDG LY+D + K RI++ L
Sbjct: 105 YNKLKLKAFDRNGSPYEVEVEGLRAQAIQHEIDHLDGKLYIDYLSSLKRERILKKL 160
>gi|359777560|ref|ZP_09280840.1| peptide deformylase [Arthrobacter globiformis NBRC 12137]
gi|359305100|dbj|GAB14669.1| peptide deformylase [Arthrobacter globiformis NBRC 12137]
Length = 190
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 93/173 (53%), Gaps = 22/173 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH A EV+ + G ++ +I DM + A GVGLAAPQIGV RI V
Sbjct: 6 ITIWGEPVLHRRAAEVEEFDDG---LRQLIADMFETNDMANGVGLAAPQIGVGKRIFV-- 60
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAV 192
Y+ + E D P +++NP L AL EGCLS G +
Sbjct: 61 -------YKFENE----DGAP-PAGVVVNPVLTLSKVSGALPDPDEEVEGCLSFPGGQYP 108
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
++R + V G D G+P+ +ATGW ARI+QHE DHLDG LYV++++ + R
Sbjct: 109 LKRAEWVRVQGFDGHGKPVDFEATGWFARIIQHEYDHLDGKLYVNRLIDRYAR 161
>gi|406941069|gb|EKD73653.1| hypothetical protein ACD_45C00233G0004 [uncultured bacterium]
Length = 175
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 9/162 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ + G P+L + A EV +I + +Q ++D ++ + G GLAAPQ+ R++V
Sbjct: 5 VARMGHPILQQRAEEVK--DIAAPDVQAFLNDFIETFHALDGAGLAAPQVFKAWRMVVFH 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
E + + D PF +L +NP+++ +D T + +EGC S+ G V R
Sbjct: 63 LPFERATLRGHP-----DEIPFTVL--INPEIEFLTDETEIGWEGCFSLPGLMGQVSRCK 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I +G+ +G I A G+ ARI+QHECDHLDG LY +M
Sbjct: 116 AIRYSGITPEGHRIDRQAEGYHARIVQHECDHLDGVLYPMRM 157
>gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9]
gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9]
Length = 167
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 97/177 (54%), Gaps = 21/177 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I+ D LH AR VD + + ++ +IDDM + M +A G+GLAA QI R++
Sbjct: 3 LLNILHYPDERLHTVARPVD---VVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ ++E+ LL+++NP + +K+ T ++ EGCLSV G V
Sbjct: 60 VIDLSEEHDG----------------LLVLINPVITRKAGET-VYEEGCLSVPGIYDKVT 102
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP-KTFRIVENL 250
R + V LDR+GQP +DA G A +QHE DHLDG ++V+ + K RI + L
Sbjct: 103 RAETVTVEALDRNGQPFSLDAEGLLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKL 159
>gi|295100691|emb|CBK98236.1| peptide deformylase [Faecalibacterium prausnitzii L2-6]
Length = 178
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 10/155 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+ GDP+L++ R P +R+ ++DDM + M +A GVGLA PQ+G+ R+ V+
Sbjct: 6 IVKEGDPILNKVCR---PVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRVFVVW 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
DT + + EEI + + + +NP++ S+ +EGCLS G+ V R +
Sbjct: 63 DTTD-----APEEIP--ENYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPV 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232
++V DR+G+ +++A G AR +QHE DHLDG
Sbjct: 116 AVKVRAQDRNGEWFELEAEGLLARCIQHENDHLDG 150
>gi|255319189|ref|ZP_05360406.1| peptide deformylase [Acinetobacter radioresistens SK82]
gi|262379692|ref|ZP_06072848.1| polypeptide deformylase [Acinetobacter radioresistens SH164]
gi|255303582|gb|EET82782.1| peptide deformylase [Acinetobacter radioresistens SK82]
gi|262299149|gb|EEY87062.1| polypeptide deformylase [Acinetobacter radioresistens SH164]
Length = 159
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 91/162 (56%), Gaps = 9/162 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q G+ VL A EV E +E ++ + M M GVG+AAPQ+ + RII++
Sbjct: 7 VAQRGEKVLTLKAAEVSENEFNTEWLRQLAQAMHTTMLEQNGVGIAAPQVYISKRIIIV- 65
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
S+ + D + ++++NP++ + S T+L EGCLSV+ R VER
Sbjct: 66 --------ASRSNPRYPDAPEMEAVVMVNPEILEFSRETSLGEEGCLSVSDVRGTVERAE 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ L +G+P++ G+ ARI+QHE DHL+G L+V+++
Sbjct: 118 TVKLCYLTLEGEPVETIYKGFPARIIQHEIDHLNGILFVERL 159
>gi|258515528|ref|YP_003191750.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
gi|257779233|gb|ACV63127.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771]
Length = 164
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 23/161 (14%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+ GDPVL + A +P + + I ++ +M M A GVGLAAPQIG+ R++V+
Sbjct: 6 IVEVGDPVLRQKA---NPVKNINSSIHKLLKNMADTMYDAKGVGLAAPQIGISKRVVVV- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D E LL ++NP++ K S + EGCLS+ G V R
Sbjct: 62 DIGE------------------GLLELINPRIIKASGQET-DTEGCLSIPGTLGQVPRAS 102
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
I+V L+R+G+ ++ G+ AR +QHE DHLDG L++DK
Sbjct: 103 KIQVQALNRNGEQVEYHVKGFMARAVQHELDHLDGILFIDK 143
>gi|33862657|ref|NP_894217.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
gi|39931000|sp|Q7V8G6.1|DEF1_PROMM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|33634573|emb|CAE20559.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT
9313]
Length = 192
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 87/164 (53%), Gaps = 10/164 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ G+P L + + VD + E I ++I D+ +++ G GLAAPQIGVPLR+++
Sbjct: 5 EILRMGNPQLRKVSNVVD--DASDELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRVVLF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y I +++NP L +EGCLSV G R V R+
Sbjct: 63 GGGGPNPRYPEAPSIPQ--------TLLINPVLTPIGSDLEDGWEGCLSVPGLRGKVSRW 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I L+ DG ++ G+ AR++QHECDHLDG L+ D++V
Sbjct: 115 SRIHYRALNEDGFEVEHCLEGFPARVIQHECDHLDGVLFPDRLV 158
>gi|432836235|ref|ZP_20069767.1| peptide deformylase [Escherichia coli KTE136]
gi|431382336|gb|ELG66674.1| peptide deformylase [Escherichia coli KTE136]
Length = 169
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 25/175 (14%)
Query: 85 VLHEPAREV----DPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTK 140
VLH P + P E + IQ I+DDM + M + G+GLAA Q+ + RIIV++ +K
Sbjct: 6 VLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSK 65
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
D R L+++NP+L +KS T + EGCLS+ RA+V R ++
Sbjct: 66 NR------------DER----LVLINPELLEKSGETGIE-EGCLSIPEQRALVPRAEKVK 108
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP-KTFRI---VENLD 251
+ LDRDG+P +++A G A +QHE DHL G L++D + P K RI VE LD
Sbjct: 109 IRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLD 163
>gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
AMB-1]
gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
AMB-1]
Length = 190
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 95/167 (56%), Gaps = 18/167 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I+ A DPVL ++ P +RI+ ++ DM+ M APG+GLAAPQIGV R
Sbjct: 22 AVLP-ILTAPDPVLKSKSK---PVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLER 77
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+IV++ + KEE DR P + ++NP++ SD + EGCLSV + +
Sbjct: 78 VIVMDIGR-------KEE----DRAP---IRMVNPEIVWASDEDNTYEEGCLSVPEHYSN 123
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V R ++V LD G ++ A G A ++QHE DHLDG L++D +
Sbjct: 124 VVRPASVKVRYLDETGAKQEILADGLLATVVQHEMDHLDGILFIDHL 170
>gi|334128611|ref|ZP_08502494.1| peptide deformylase [Centipeda periodontii DSM 2778]
gi|333386702|gb|EGK57912.1| peptide deformylase [Centipeda periodontii DSM 2778]
Length = 156
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 21/161 (13%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI +AGDPVL + A +D ++R + ++DDM + M SA GVGLAAPQ+G LRI+V+
Sbjct: 5 EIKKAGDPVLKQIAAPIDRL---TKRHRQLLDDMAETMYSADGVGLAAPQVGKSLRIVVI 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ E+ LL ++NP + + T + EGCLSV VER
Sbjct: 62 DVQDEH-----------------GLLELVNPVITTREG-TVVDSEGCLSVPQVYGDVERA 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V DR + + A G AR +QHECDHLDG L++D
Sbjct: 104 ERVTVEYTDRRSRRRSLTAEGLLARCIQHECDHLDGRLFID 144
>gi|365846736|ref|ZP_09387236.1| peptide deformylase [Yokenella regensburgei ATCC 43003]
gi|364573466|gb|EHM50962.1| peptide deformylase [Yokenella regensburgei ATCC 43003]
Length = 169
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 27/168 (16%)
Query: 88 EPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQS 147
EP +EV+ IQ I+DDM M + G+GLAA Q+ + RIIV++ +S
Sbjct: 19 EPVKEVNAD------IQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVID-----VSENR 67
Query: 148 KEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRD 207
E L+++NP L +KS T + EGCLS+ RA+V R ++++ LDRD
Sbjct: 68 DER-----------LVLINPTLLEKSGETGIE-EGCLSIPEQRALVPRAETVKISALDRD 115
Query: 208 GQPIKVDATGWQARILQHECDHLDGTLYVDKMVP-KTFRI---VENLD 251
G+P +++A G A +QHE DHL G L++D + P K RI VE LD
Sbjct: 116 GKPFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLD 163
>gi|428308167|ref|YP_007144992.1| peptide deformylase [Crinalium epipsammum PCC 9333]
gi|428249702|gb|AFZ15482.1| Peptide deformylase [Crinalium epipsammum PCC 9333]
Length = 174
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 11/163 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI Q G+ +L + A+ ++ I E IQ +IDD++ ++ GVG+AAPQ R+ ++
Sbjct: 6 EISQLGNSILRQQAQPIE--NIHDEHIQKLIDDLIATAIASNGVGIAAPQTAQSYRLFIV 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ Y S +++ ++NPK+ S +EGCLS+ G R +V RY
Sbjct: 64 A-SRPNPRYPSAPKMEP--------TAMINPKIISHSSDVVKGWEGCLSIPGIRGLVPRY 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
IEV RDG+ + + T + ARI QHE DHLDG L++D++
Sbjct: 115 QTIEVEYTSRDGKLHRQELTDFVARIFQHEYDHLDGILFIDRV 157
>gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa subsp. sandyi
Ann-1]
Length = 170
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A V E+ S Q ++DDM + M +APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ ++E P ++ +NP++ K + +F EGCLSV G A
Sbjct: 61 FMVIDVSEE-------------KNVP---MVFINPEIVTK-EGDQVFQEGCLSVPGIHAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R L I V LDR G ++ A G A +QHE DHLDG L++D + P
Sbjct: 104 VTRALSIVVRFLDRHGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSP 152
>gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1]
gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1]
gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1]
gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1]
Length = 175
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E ++++ DM M A G+GLAA Q+G P+R++V++ KE
Sbjct: 11 DPVLRQVSK---PVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP + + SD+ + + EGCLS+ Y A VER ++V
Sbjct: 67 -------------GEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
D DG+P ++A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFK 163
>gi|440733512|ref|ZP_20913227.1| peptide deformylase [Xanthomonas translucens DAR61454]
gi|440360991|gb|ELP98240.1| peptide deformylase [Xanthomonas translucens DAR61454]
Length = 171
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A+ VD GS + ++ DM + M +A GVGLAAPQI V L+++V
Sbjct: 4 DIIRMGDQRLLRLAQPVD--TFGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV- 60
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + D P + N +++ SD +EGCLS+ G RAV+ RY
Sbjct: 61 --------FGFDSNARYPDAPPVPRTALANVQIEPLSDELEDGWEGCLSIPGLRAVIPRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I GLD DG + +A G+ AR++QHE DHL G LY
Sbjct: 113 RQIRYRGLDPDGTAVVCEAEGFHARVVQHEHDHLIGRLY 151
>gi|395789111|ref|ZP_10468641.1| peptide deformylase [Bartonella taylorii 8TBB]
gi|395431245|gb|EJF97272.1| peptide deformylase [Bartonella taylorii 8TBB]
Length = 176
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L E ++ P E +Q + DDM+ M +A GVGLAA QIG+PLR++V++ +++
Sbjct: 11 DPILREVSK---PVEHIDSALQKLADDMLDTMYNAQGVGLAAIQIGIPLRMLVIDVSRDD 67
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
IS + P L+++NP++ SD + EGCLS+ Y A VER + V
Sbjct: 68 IS-----------KNP---LVVINPEILWLSDERNTYKEGCLSIPEYYAEVERPKRLCVR 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
DR G+ +++A A LQHE DHL+G L++D
Sbjct: 114 YQDRQGKQTEIEADDLLATCLQHEIDHLNGCLFID 148
>gi|78049192|ref|YP_365367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325926668|ref|ZP_08187982.1| peptide deformylase [Xanthomonas perforans 91-118]
gi|346726281|ref|YP_004852950.1| N-formylmethionyl-tRNA deformylase [Xanthomonas axonopodis pv.
citrumelo F1]
gi|78037622|emb|CAJ25367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325543020|gb|EGD14469.1| peptide deformylase [Xanthomonas perforans 91-118]
gi|346651028|gb|AEO43652.1| N-formylmethionyl-tRNA deformylase [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 171
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V +GS + ++ DM + M +A GVGLAAPQI V L+++V
Sbjct: 4 EIIRMGDKRLLRVAPPVS--NLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMVF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + + E A R + N +++ S+ +EGCLS+ G RAV+ RY
Sbjct: 62 G----FDASERYPEAPAVPR-----TALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
I G DG PI+ DA G+ AR++QHE DHL G LY + +EN D
Sbjct: 113 RFIRYRGFAPDGTPIERDAEGFHARVVQHEYDHLVGRLYPSR--------IENFD 159
>gi|354582477|ref|ZP_09001379.1| peptide deformylase [Paenibacillus lactis 154]
gi|353199876|gb|EHB65338.1| peptide deformylase [Paenibacillus lactis 154]
Length = 164
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 21/160 (13%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV+ D VLH+ A+E+ + +Q ++DDM M A GVGLAAPQ+G+ R+IV++
Sbjct: 6 IVKEPDEVLHKRAKEITKI---TPNVQKLLDDMADTMYDADGVGLAAPQVGILKRLIVVD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
E+ L+ ++NP++ + S+ EGCLS+ G+ V R
Sbjct: 63 AGDEH-----------------GLIKMINPEIIE-SEGEQFGPEGCLSIPGWNGDVRRAE 104
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+ V GLDR+G + V TG AR QHE DHL+G L+ D
Sbjct: 105 KVTVKGLDREGNELVVTGTGLLARAFQHEIDHLNGVLFTD 144
>gi|293603522|ref|ZP_06685943.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
gi|292817958|gb|EFF77018.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
Length = 177
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 87/162 (53%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + + + +I DM + M +A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAPPVE--QFDTPELHALIADMFETMAAAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E P +L NP + SD +EGCLSV G R V RY
Sbjct: 62 ------GFDRNERYPDAPAVPQTIL--CNPVITPLSDEMEDGWEGCLSVPGLRGQVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I +G D G+ I+ +A G+ AR++QHECDHL G LY ++
Sbjct: 114 HIRYSGFDPYGKLIEREAEGFHARVVQHECDHLIGRLYPSRI 155
>gi|390951441|ref|YP_006415200.1| peptide deformylase [Thiocystis violascens DSM 198]
gi|390428010|gb|AFL75075.1| peptide deformylase [Thiocystis violascens DSM 198]
Length = 178
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 21/167 (12%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
AKL +I+ DP L AR P E IQ ++DDM++ M +APG+GLAA Q+ VPL+
Sbjct: 2 AKL-DILTFPDPRLRHKAR---PVEHVDAAIQRLVDDMLETMYAAPGIGLAATQVDVPLQ 57
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
++V++ ++ + + L ++NP++ + T EGCLSV G+
Sbjct: 58 VLVIDTSERHDTP----------------LCLINPRILS-LEGTEQMDEGCLSVPGFYET 100
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
V R + V LDR G+P +DA G A +QHE DHL G L+VD +
Sbjct: 101 VTRAERVSVQALDRAGEPFTLDADGLLAVCIQHEIDHLAGKLFVDHI 147
>gi|224369791|ref|YP_002603955.1| hypothetical protein HRM2_26990 [Desulfobacterium autotrophicum
HRM2]
gi|259645178|sp|C0QI55.1|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2]
Length = 174
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 12/165 (7%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L EI Q VL + A +V E + + +++DM + M APGVGLAAPQ+G RII
Sbjct: 3 LLEIYQYPAAVLLKKALQV---ETIDDTVIKLVNDMGETMFEAPGVGLAAPQVGQSRRII 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V + S + E+ K F ++NP++ S E CLSV Y V+
Sbjct: 60 VY--NPQAGSSNANEDTKEFK-------ALINPEIIASSGSIVSENEACLSVPDYSCNVK 110
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R+ + V GL+ +G+ ++ DA G A I+QHE DHLDG LY+D++
Sbjct: 111 RFETVTVRGLNLEGKKLEFDAQGLLAVIMQHEIDHLDGILYIDRI 155
>gi|71083162|ref|YP_265881.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
gi|123748062|sp|Q4FNG1.1|DEF_PELUB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|71062275|gb|AAZ21278.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
Length = 172
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 15/140 (10%)
Query: 98 IGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRR 157
+G E + ++DDM+ M +APG+GLAA QIGVP RIIV++ +++ + K+E + F
Sbjct: 24 VGDEE-RRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIVMDISRD----EDKKEPRYF--- 75
Query: 158 PFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATG 217
+NP +K K+D T+ + EGCLSV A +ER + EV LD +G+ + A G
Sbjct: 76 -------VNPVIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGKKQLLKADG 128
Query: 218 WQARILQHECDHLDGTLYVD 237
A +QHE DHL+G L++D
Sbjct: 129 LLATCIQHEMDHLEGVLFID 148
>gi|294624946|ref|ZP_06703599.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|294665783|ref|ZP_06731054.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292600746|gb|EFF44830.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292604435|gb|EFF47815.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 171
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GD L A V +GS + ++ DM + M +A GVGLAAPQI V L+++V
Sbjct: 4 EIIRMGDKRLLRVAPPVT--NLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMVF 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ + + E A R + N +++ S+ +EGCLS+ G RAV+ RY
Sbjct: 62 G----FDASERYPEAPAVPR-----TALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRY 112
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
I G DG PI+ DA G+ AR++QHE DHL G LY + +EN D
Sbjct: 113 RFIRYRGFAPDGSPIERDAEGFHARVVQHEYDHLVGRLYPSR--------IENFD 159
>gi|351729838|ref|ZP_08947529.1| peptide deformylase [Acidovorax radicis N35]
Length = 179
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A+ V E ++ + ++ DM M+S G GLAAPQIGV L++++
Sbjct: 6 ILKMGDPRLLRIAQPVT--EFDTDALHLLVRDMFDTMQSVNGAGLAAPQIGVNLQLVI-- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPF-DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ S E + RP ++LNP + D +EGCLSV G R V R+
Sbjct: 62 -------FGSGERNPRYPDRPVVPRTVLLNPVIMPLGDEEDEDWEGCLSVPGLRGKVPRW 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I TG D G PI G+ AR++QHECDHL G LY
Sbjct: 115 SRIRYTGFDPYGDPIDRTVEGFHARVVQHECDHLIGKLY 153
>gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 177
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 11/159 (6%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVL A VD E+ + + ++ DM++ M SA GVGLAA Q+GV R+ V + +
Sbjct: 9 GDPVLVSEAEPVD--EV-TASTKTLVSDMLETMDSAGGVGLAANQVGVLQRVFVYDCPVD 65
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E K I+NP + + L EGCLS+ A ERY+++ V
Sbjct: 66 DSDPNPDREYKRG--------AIINPVWEPVGEEMQLGQEGCLSIPDVYADTERYMNVHV 117
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
TGLD +G + +ATG AR +QHE DHLDG L++ ++
Sbjct: 118 TGLDENGDNVDFEATGLLARCIQHETDHLDGVLFIKRLT 156
>gi|398806832|ref|ZP_10565731.1| peptide deformylase [Polaromonas sp. CF318]
gi|398087197|gb|EJL77794.1| peptide deformylase [Polaromonas sp. CF318]
Length = 179
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI++ GDP L A+ V ++ + ++ DM MR+ G GLAAPQIGV L++++
Sbjct: 5 EILKMGDPRLLRVAQPVT--AFDTDELHQLVSDMFDTMRAVNGAGLAAPQIGVDLQLVIF 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
Y + ++LNP ++ +EGCLSV G R VV R+
Sbjct: 63 GTDAVNPRYPDAPLVPR--------TVLLNPVIRPLGPEEEEGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I G D+ G PI+ G+ AR++QHECDHL GTLY
Sbjct: 115 SRIHYAGFDQYGDPIERTVEGFHARVVQHECDHLIGTLY 153
>gi|383818812|ref|ZP_09974091.1| peptide deformylase [Mycobacterium phlei RIVM601174]
gi|383337608|gb|EID15983.1| peptide deformylase [Mycobacterium phlei RIVM601174]
Length = 198
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 90/171 (52%), Gaps = 18/171 (10%)
Query: 82 GDPVLHEPAREVDPGEIGS--ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
GDPVLH P V G+ G E + ++I DM M +A GVGLAA QIGV R+ V +
Sbjct: 10 GDPVLHTPTEPVPVGDDGKLPEDLADLIQDMFDTMDAANGVGLAANQIGVSKRLFVYDCA 69
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVE 194
+E S+ RR +++NP L+ + EGCLSV G +
Sbjct: 70 EERGKPHSR-------RRG----VVINPVLETSEIPETMPDPDEDEEGCLSVPGEQFPTG 118
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
R VTGLD +G P+ ++ T AR+LQHE HLDG LY+DK++ + R
Sbjct: 119 RATWARVTGLDAEGNPVTLEGTDLFARMLQHETGHLDGFLYIDKLIGRHAR 169
>gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 183
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 85/164 (51%), Gaps = 17/164 (10%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A VD E+ S+ Q ++DDM + M APG+GLAA Q+ V R +V++
Sbjct: 19 ILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKRFMVID 78
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+ E Q + +NP++ K L EGCLSV G A V R
Sbjct: 79 VSDEKNLPQ----------------VFVNPEIVSKQGEQ-LCQEGCLSVPGIYADVSRAD 121
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
I V LDR GQ ++ A G A +QHE DHLDG L+VD + P
Sbjct: 122 AITVRYLDRQGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSP 165
>gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2]
Length = 200
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV G+PVLH+ A ++ + E + +I DM + + ++ GVGLAAPQIGV RI V
Sbjct: 15 IVIYGEPVLHQRAEKITDFD---EELATLIADMHETLDASNGVGLAAPQIGVGKRIFVFN 71
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
EE R F +++ K+ EGCLSV ++R
Sbjct: 72 --------AEDEEAGVRRRGTFINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRAD 123
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V GLD GQ + + A GW ARI+QHE DHL GTLYVD++
Sbjct: 124 RVTVNGLDETGQSVSLTAEGWFARIMQHEYDHLQGTLYVDRL 165
>gi|365901513|ref|ZP_09439351.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. STM 3843]
gi|365417706|emb|CCE11893.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. STM 3843]
Length = 175
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P E + I+ ++DDM + M APG+GLAA Q+ P+R+I ++ K + + K E + F
Sbjct: 20 PVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPVRVITMDLAKRDENGEGKAEPRVF 79
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP++ KSD +++ EGCLS+ Y VER + V D DG+ + D
Sbjct: 80 ----------INPEILSKSDELSVYQEGCLSIPEYYEEVERPARVRVRFTDLDGKVHEED 129
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHE DHL+G L++D +
Sbjct: 130 AEGLYATCIQHEIDHLNGVLFIDYL 154
>gi|357021482|ref|ZP_09083713.1| peptide deformylase [Mycobacterium thermoresistibile ATCC 19527]
gi|356479230|gb|EHI12367.1| peptide deformylase [Mycobacterium thermoresistibile ATCC 19527]
Length = 197
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 82 GDPVLHEPAREVDPGEIGS--ERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDT 139
GDPVLH P V G+ GS + + ++I DM M +A GVGLAA QIGV LR+ V +
Sbjct: 10 GDPVLHSPTSPVPVGDDGSLPDDLPDLITDMFDTMDAANGVGLAANQIGVSLRVFVYDCA 69
Query: 140 KEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTAL-----FFEGCLSVNGYRAVVE 194
+ + + ++NP L+ + EGCLSV G +
Sbjct: 70 ETRGRSTRRRGV------------VINPVLETSEIPETMPDPDTDEEGCLSVPGEQFPTG 117
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
R VTGLD +G PI ++ T AR+LQHE HLDG LY+D++V + R + +
Sbjct: 118 RADWARVTGLDAEGNPITLEGTDLFARMLQHEVGHLDGYLYLDRLVGRYARAAKRMVKAR 177
Query: 255 AEGCPKL 261
G P L
Sbjct: 178 GWGVPGL 184
>gi|379709690|ref|YP_005264895.1| peptide deformylase [Nocardia cyriacigeorgica GUH-2]
gi|374847189|emb|CCF64259.1| peptide deformylase [Nocardia cyriacigeorgica GUH-2]
Length = 180
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 83/160 (51%), Gaps = 22/160 (13%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDP+L A EV E E ++ ++ D+ + M GVG+AAPQIGV LR+ V DT +
Sbjct: 10 GDPILRARAAEVT--EFDRE-LRQLVTDLTETMHDDGGVGMAAPQIGVGLRVFVY-DTGD 65
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
+ ++NP D + EGCLS+ G R R L +
Sbjct: 66 AAGH------------------LVNPSWTVLGDEEQIGPEGCLSIPGLRYDTRRALRVRA 107
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
TG+D G P++ +A G AR +QHE DHLDG L++D++ P
Sbjct: 108 TGVDMTGAPVEFEAEGLLARCVQHETDHLDGVLFIDRLEP 147
>gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573]
gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603]
gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223]
gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451]
gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603]
gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573]
gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451]
gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223]
Length = 168
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 22/166 (13%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAP-GVGLAAPQIGVPLRIIV 135
EI+ A DP L +++V ++ S +Q +IDD++ + + G+GLAAPQ+G I+V
Sbjct: 5 EILTAPDPRLRVQSKQV--TDVAS--VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVV 60
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
I D R +++I NPK+ S++ + EGCLSV Y A VER
Sbjct: 61 ---------------IDLSDNRDEPMVLI-NPKVVSGSNKE-MGQEGCLSVPDYYADVER 103
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
Y + V LDRDG+P+K++++ + A ++QHE DHL G L++D + P
Sbjct: 104 YTSVVVEALDRDGKPLKIESSDFLAIVMQHEIDHLSGNLFIDYLSP 149
>gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
Length = 178
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 19/164 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP LH+ A+ P + ERI+ ++ DM + M APGVGLAA Q+ V ++IV+
Sbjct: 6 ILRYPDPRLHKVAK---PVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIVI- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
DT E + E++A+ +NP++ S ++ EGCLSV G VER+
Sbjct: 62 DTSE-----THTELRAY----------INPEIIWASPEMQVYDEGCLSVPGVYDGVERHA 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
++V D DG+ +++A G A +QHE DHL G ++V+ + P
Sbjct: 107 KVKVRAFDADGKQFELEADGLLAVCIQHEMDHLKGKVFVEYLSP 150
>gi|407767854|ref|ZP_11115233.1| peptide deformylase 1 [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288567|gb|EKF14044.1| peptide deformylase 1 [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 172
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 17/165 (10%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L +I+ DP L + EV ++ E I+ ++DDM++ M +APG+GLAAPQIGV R++
Sbjct: 3 LRDILIVPDPRLKQECEEV--AQVNDE-IRELLDDMLETMYAAPGIGLAAPQIGVMKRVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ + D+ L ++NP++ +S+ T+++ EGCLS+ A VE
Sbjct: 60 VMDVSD--------------DKEKPQPLKLVNPEIIWESEDTSVYQEGCLSIPEQYADVE 105
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R ++ + LD +G+ +++A G A +QHE DHLDG L+ D +
Sbjct: 106 RPAEVGLRYLDENGKEHEIEADGLLATCIQHELDHLDGILFTDYL 150
>gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B]
gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B]
Length = 168
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 26/172 (15%)
Query: 73 AKLPEIVQAGDPVLH---EPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGV 129
A LP I++ DP L +P EVD +RI+ +IDDM++ M APG+GLAA Q+ V
Sbjct: 2 AILP-ILEFPDPRLRTRAKPVTEVD------QRIRRLIDDMLETMYDAPGIGLAASQVDV 54
Query: 130 PLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGY 189
R+IV++ + ++++E + F +NP++ + EGCLSV G+
Sbjct: 55 HERVIVIDVS------ENRDEPRVF----------INPEVTVIDKTLGSYDEGCLSVPGF 98
Query: 190 RAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R IEVT LDR+G + G A LQHE DHL+G L+VD + P
Sbjct: 99 FETVNRPSSIEVTALDREGDTFAEELDGLLAICLQHEIDHLEGKLFVDYLSP 150
>gi|295836587|ref|ZP_06823520.1| peptide deformylase [Streptomyces sp. SPB74]
gi|197697279|gb|EDY44212.1| peptide deformylase [Streptomyces sp. SPB74]
Length = 210
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 97/186 (52%), Gaps = 23/186 (12%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I G+PVLH+ +V + G E + ++DDM R+A GVGLAA Q+GV L++ V
Sbjct: 38 ITVVGNPVLHKECADVT--DFGPE-LAKLVDDMFASQRAAEGVGLAANQVGVSLKVFV-- 92
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALF---FEGCLSVNGYRAVVE 194
Y ++ D+ + ++ NPKL+ EGCLSV G A
Sbjct: 93 -------YDCQD-----DQGERHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATP 140
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPL 254
R EVTG D G IKV TG+ AR LQHE DHL G+LY+D++ + R ++ +
Sbjct: 141 RTEYAEVTGQDEHGNAIKVRGTGYFARCLQHETDHLYGSLYLDRL---SKRDRKDALKQM 197
Query: 255 AEGCPK 260
AEG P+
Sbjct: 198 AEGTPR 203
>gi|421526471|ref|ZP_15973079.1| polypeptide deformylase [Fusobacterium nucleatum ChDC F128]
gi|402257549|gb|EJU08023.1| polypeptide deformylase [Fusobacterium nucleatum ChDC F128]
Length = 174
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + G+ VL + A+EV+ EI E + +DDMV+ M GVGLAAPQIGV RI V
Sbjct: 4 EIKKYGEDVLKQIAKEVELNEINDE-FRKFLDDMVETMYETDGVGLAAPQIGVSKRIFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ + I ++NP + ++ T F EGCLSV G VER
Sbjct: 63 DNGEGVIR------------------KVINPVIVPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ G+ I+ A + A ++QHE DHLDG L+V+K+ P R++
Sbjct: 105 KRVLLKYLNEYGKEIEEIAEDFLAVVVQHENDHLDGILFVEKISPMAKRLI 155
>gi|334345185|ref|YP_004553737.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
gi|334101807|gb|AEG49231.1| Peptide deformylase [Sphingobium chlorophenolicum L-1]
Length = 176
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 10/162 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++A DP L + P E +Q +IDDM++ M APG+GLAA Q+GVP R++V+
Sbjct: 6 ILEAPDPRLRTIS---SPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLVI- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
D +E +S EE ++P ++ +NP++ + S+ +++ EGCLSV A VER
Sbjct: 62 DLQEP---ESDEEDAPPVKKP---MVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPA 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I + +DRDG+ + G A LQHE DHL G L++D +
Sbjct: 116 SIRASWMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHL 157
>gi|296328150|ref|ZP_06870681.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154662|gb|EFG95448.1| formylmethionine deformylase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 174
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 19/171 (11%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + G+ VL + A+EV+ EI E + +DDMV+ M GVGLAAPQIGV RI V
Sbjct: 4 EIKKYGEDVLKQIAKEVELSEINDE-FRQFLDDMVETMYETDGVGLAAPQIGVSKRIFVC 62
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+D L ++NP + ++ T F EGCLSV G VER
Sbjct: 63 DDGNGV------------------LRKVINPIIVPLTEETQEFEEGCLSVPGIYKKVERP 104
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIV 247
+ + L+ G+ ++ A + A ++QHE DHLDG L+++K+ P R++
Sbjct: 105 KRVLLKYLNEYGKEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLI 155
>gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS 278]
gi|158514293|sp|A4YLB9.1|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
sp. ORS 278]
Length = 175
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 10/145 (6%)
Query: 95 PGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154
P E + I+ ++DDM + M APG+GLAA Q+ PLR+I ++ K ++K E + F
Sbjct: 20 PVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVITMDLAKPDSGGETKREPRVF 79
Query: 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVD 214
+NP++ KSD +++ EGCLS+ Y VER + V D DG + D
Sbjct: 80 ----------INPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTDLDGVVREED 129
Query: 215 ATGWQARILQHECDHLDGTLYVDKM 239
A G A +QHE DHL+G L++D +
Sbjct: 130 AEGLYATCIQHEIDHLNGVLFIDYL 154
>gi|120611762|ref|YP_971440.1| peptide deformylase [Acidovorax citrulli AAC00-1]
gi|120590226|gb|ABM33666.1| peptide deformylase [Acidovorax citrulli AAC00-1]
Length = 200
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L AR V E G+ + ++ DM MR+ G GLAAPQIGV L++++
Sbjct: 26 DILKMGDERLLRTARPV--AEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVVI- 82
Query: 137 EDTKEYISYQSKEEIKAFDRRPF-DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
+ S+E + RP +++NP++ +EGCLSV G R VV R
Sbjct: 83 --------FGSEERNPRYPDRPLVPPTVLVNPRITPLGGEEEEDWEGCLSVPGLRGVVPR 134
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
+ I G D G PI G+ AR++QHECDHL G LY
Sbjct: 135 WSRIHYRGFDEHGAPIDRTVEGFHARVVQHECDHLVGKLY 174
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,320,619,595
Number of Sequences: 23463169
Number of extensions: 184008349
Number of successful extensions: 411523
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4999
Number of HSP's successfully gapped in prelim test: 700
Number of HSP's that attempted gapping in prelim test: 400267
Number of HSP's gapped (non-prelim): 5869
length of query: 266
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 126
effective length of database: 9,074,351,707
effective search space: 1143368315082
effective search space used: 1143368315082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)