BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024519
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FUZ0|DEF1A_SOLLC Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum
GN=PDF1A PE=2 SV=1
Length = 277
Score = 337 bits (864), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 159/213 (74%), Positives = 189/213 (88%)
Query: 51 KARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDM 110
K +SA ++AGW LGLG+ KK +P+IV+AGDPVLHEP++++ EIGSERIQ II++M
Sbjct: 64 KKNYSSATARAGWFLGLGEKKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEM 123
Query: 111 VKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLK 170
VKVMR+APGVGLAAPQIG+PL+IIVLEDT EYISY K+E KA DRRPF LL+I+NPKLK
Sbjct: 124 VKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLK 183
Query: 171 KKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHL 230
KK ++TALFFEGCLSV+G+RAVVER+L++EVTGLDR+G+ IKVDA+GWQARILQHE DHL
Sbjct: 184 KKGNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHL 243
Query: 231 DGTLYVDKMVPKTFRIVENLDLPLAEGCPKLGV 263
DGTLYVDKM P+TFR VENLDLPLA GCPKLGV
Sbjct: 244 DGTLYVDKMAPRTFRTVENLDLPLAAGCPKLGV 276
>sp|Q9FV53|DEF1A_ARATH Peptide deformylase 1A, chloroplastic OS=Arabidopsis thaliana
GN=PDF1A PE=1 SV=3
Length = 269
Score = 335 bits (858), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 207/265 (78%), Gaps = 11/265 (4%)
Query: 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHR--KARTTSAI 58
ME + R S+ LP+ SA + R VS P S+ + + + ++S
Sbjct: 11 METLFRVSLRLLPV--------SAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLS 62
Query: 59 SKAGWLLGLGQNKK-AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSA 117
+KAGWLLGLG+ KK LPEIV +GDPVLHE AREVDPGEIGSERIQ IIDDM+KVMR A
Sbjct: 63 TKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLA 122
Query: 118 PGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA 177
PGVGLAAPQIGVPLRIIVLEDTKEYISY KEEI A +RR FDL++++NP LK++S++ A
Sbjct: 123 PGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKA 182
Query: 178 LFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
LFFEGCLSV+G+RA VERYL++ VTG DR G+ I+V+A+GWQARILQHECDHLDG LYVD
Sbjct: 183 LFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVD 242
Query: 238 KMVPKTFRIVENLDLPLAEGCPKLG 262
KMVP+TFR V+NLDLPLAEGCPKLG
Sbjct: 243 KMVPRTFRTVDNLDLPLAEGCPKLG 267
>sp|B6RGY0|DEF1A_ORYSJ Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp.
japonica GN=PDF1A PE=2 SV=1
Length = 260
Score = 304 bits (778), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 142/187 (75%), Positives = 169/187 (90%)
Query: 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIV 135
P V+AGDPVLHEPA++V PG+I SE++Q +ID MV VMR APGVGLAAPQIGVPL+IIV
Sbjct: 72 PGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIV 131
Query: 136 LEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
LEDT+EYISY K++I+A DRRPFDLL+I+NPKLK S RTALFFEGCLSV+GYRA+VER
Sbjct: 132 LEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVER 191
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLA 255
+LD+EV+GLDR+G+PIKV+A+GWQARILQHECDHL+GTLYVD MVP+TFRIV+NLDLPL
Sbjct: 192 HLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLP 251
Query: 256 EGCPKLG 262
GCP +G
Sbjct: 252 VGCPPIG 258
>sp|Q7NJV3|DEF1_GLOVI Peptide deformylase 1 OS=Gloeobacter violaceus (strain PCC 7421)
GN=def1 PE=3 SV=1
Length = 227
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 114/175 (65%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EIV+ GDPVL A+ ++ EI SE IQ +I M + MR APGVGLAAPQ+GV ++++V+
Sbjct: 47 EIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVI 106
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
ED EYI S E + +R P +++NP L + + +A+FFEGCLS+ GY+ +V R
Sbjct: 107 EDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARA 166
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
+ V LD P+ + A GW ARILQHE DHL+G L VD+M +TF +EN D
Sbjct: 167 RVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLENYD 221
>sp|Q825U9|DEF3_STRAW Peptide deformylase 3 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=def3 PE=3 SV=1
Length = 224
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++G + ++ + M +APGVGLAAPQ+GV LRI V+E
Sbjct: 35 IVAAGDPVLRRGAEPYD-GQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 93
Query: 138 DTKEYISYQSKEEIKAF-DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D EE+ A R P +++NP + A FFEGCLSV G++AVV R
Sbjct: 94 DPAPV-----PEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARP 148
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAE 256
+ +T LD G+ + + TGW ARI+QHE DHLDG LY+D+ ++ E + L ++
Sbjct: 149 ARVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAELRSLSSNEAMALRWSQ 208
Query: 257 GCPK 260
P+
Sbjct: 209 PTPE 212
>sp|Q8G534|DEF1_BIFLO Peptide deformylase 1 OS=Bifidobacterium longum (strain NCC 2705)
GN=def1 PE=3 SV=1
Length = 217
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K KL IVQAG+PVL + + G++ + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEKLLPIVQAGEPVLRQRTVAYN-GQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED + +E + F +I+NP K SD+TA F+EGCLS +GY+A
Sbjct: 84 ALAVVED------HVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQA 137
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG+ GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 138 VRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDRAEIRSLTTNENLE 197
>sp|Q9HBH1|DEFM_HUMAN Peptide deformylase, mitochondrial OS=Homo sapiens GN=PDF PE=1 SV=1
Length = 243
Score = 130 bits (328), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+ Q GDPVL A V+ ++G +Q + +V+VMR VGL+APQ+GVP +++ LE
Sbjct: 67 VCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALE 126
Query: 138 DTKEYISYQSKEEIKAFDR-RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
E + + +A + PF L + +NP L+ R F EGC SV G+ A V R+
Sbjct: 127 -LPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTF 244
++++GLD +G+ + A+GW ARI+QHE DHL G L++DKM +TF
Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 233
>sp|Q9RD27|DEF1_STRCO Peptide deformylase 1 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=def1 PE=3 SV=1
Length = 218
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
IV AGDPVL A D G++ + ++ + M +APGVGLAAPQ+GV LR+ V+E
Sbjct: 26 IVAAGDPVLRRAAEPYD-GQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVIE 84
Query: 138 DTKEYISYQSKEEIK-AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D +E++ A R P +++NP + A FFEGCLSV G++AVV R+
Sbjct: 85 DPAPV-----PDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARH 139
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238
++ + D G+ + GW ARI+QHE DHLDGTLY+D+
Sbjct: 140 AEVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181
>sp|A1A2Z1|DEF_BIFAA Peptide deformylase OS=Bifidobacterium adolescentis (strain ATCC
15703 / DSM 20083 / NCTC 11814 / E194a) GN=def PE=3 SV=1
Length = 218
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Query: 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPL 131
K K+ IVQAG+PVL + D G++ + + +ID M M APGVGLAA QIG+ L
Sbjct: 25 KEKIMPIVQAGEPVLRQQTIAYD-GQLSRKTLDKLIDTMRTTMLEAPGVGLAATQIGLGL 83
Query: 132 RIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA 191
+ V+ED ++ + + PF I+NP + T F+EGCLS +GY+A
Sbjct: 84 ALAVVED---HVCEGDDGDPREAAEFPFH--AIINPSYEPIGTETRSFYEGCLSFDGYQA 138
Query: 192 VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLD 251
V +R+LDI D DG + GW ARI QHE DHL G LY+D+ ++ ENL+
Sbjct: 139 VRKRWLDITARWQDEDGNKHEEHLHGWPARIFQHETDHLSGELYIDQAEIRSLTTNENLE 198
>sp|Q826Q0|DEF2_STRAW Peptide deformylase 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=def2 PE=3 SV=1
Length = 186
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 17/158 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH P EV + G E + +++DM M +A GVGLAA QIGVPLR+ V + +
Sbjct: 20 GDPVLHAPCEEVT--DHGPE-LARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDD 76
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
E+++ ++NP+L + EGCLS+ G A ERY V
Sbjct: 77 -------EDVRHVGH-------VVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
G DG+P++V TGW AR LQHECDHLDG +YVD++
Sbjct: 123 EGFTTDGEPVRVLGTGWFARCLQHECDHLDGGVYVDRV 160
>sp|Q93LE9|DEF_LEPIN Peptide deformylase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=def
PE=1 SV=1
Length = 178
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPDVPE-----------RIILNPVITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 114 RPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 171
>sp|Q72S74|DEF_LEPIC Peptide deformylase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=def PE=3 SV=1
Length = 178
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GDP+L + + V EI ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPGTPDVPE-----------RIILNPVITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F E LD
Sbjct: 114 RPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD 171
>sp|B3CTU1|DEF_ORITI Peptide deformylase OS=Orientia tsutsugamushi (strain Ikeda) GN=def
PE=3 SV=1
Length = 181
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 8/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
++ A DP+L + A VD ++ I+ ++DDM++ M GVGLAAPQ+ V RIIVL+
Sbjct: 6 LITAPDPILKKVASPVDTV---NDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIVLD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+K I KE+ + L M+ NP +K S++TA EGCLS+ V RY
Sbjct: 63 LSKVDI----KEDNITNSEYKYPLFMV-NPIVKAISNQTATAKEGCLSLPKQAIEVSRYH 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+I+VT LD + ++A GW AR +QHE DHLDG L VD +
Sbjct: 118 EIQVTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYL 159
>sp|Q92SH6|DEF_RHIME Peptide deformylase OS=Rhizobium meliloti (strain 1021) GN=def PE=3
SV=2
Length = 174
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + + P E I+ + DDM++ M APG+GLAA QIGVP R++VL+ TKE
Sbjct: 11 DPVLRQVS---TPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLVLDVTKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
+++P L+ +NPK+ + S+ +++ EGCLS+ Y A VER I V
Sbjct: 67 ----------GEEKQP---LVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVE 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD 237
+DR+G+ V+A G A LQHE DHL+G L++D
Sbjct: 114 YVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFID 148
>sp|Q83GH8|DEF_TROWT Peptide deformylase OS=Tropheryma whipplei (strain Twist) GN=def
PE=3 SV=1
Length = 228
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
K+ I G VLH PA+ V IQ I+ DM M +APGVGLA PQIG+ LR
Sbjct: 34 GKILPIYITGHAVLHAPAKPV----TDFSGIQEIVRDMFATMFAAPGVGLAGPQIGLGLR 89
Query: 133 IIVLEDTKEYISYQS---KEEI---KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
I V T+ +Q ++ K +R + N + DR EGCLS
Sbjct: 90 IFVYSYTEGDTLHQGVAINPDLLIPKGVPKRQTNKQQANNSTSCDEPDR-----EGCLSF 144
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
GY+ +ER + ++ D + +P V ATGW ARI QHE DHL GTLYVD++ K
Sbjct: 145 PGYQFPLERAPQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQK 200
>sp|B5YIL7|DEF_THEYD Peptide deformylase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=def PE=3 SV=1
Length = 165
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 18/165 (10%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
EI + D VL + A + EI + +Q +ID+M++ M +A G+GLAAPQ+GV R+IV+
Sbjct: 5 EIKKYPDEVLKKKAETI--SEINGD-LQKLIDNMIETMYNANGIGLAAPQVGVLKRLIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
DT QS L++++NP++ S+ L EGCLS+ G+ ++R
Sbjct: 62 -DTSPREQNQS-------------LIVLINPEITD-SEGEILSEEGCLSLPGFTTRLKRK 106
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
+ V GLDR+G+ I+++ATG AR LQHE DHLDG L +DK+ P
Sbjct: 107 ERVIVKGLDRNGKEIEIEATGLLARALQHEIDHLDGILLIDKISP 151
>sp|Q83HQ3|DEF_TROW8 Peptide deformylase OS=Tropheryma whipplei (strain TW08/27) GN=def
PE=3 SV=1
Length = 201
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
K+ I G VLH PA+ V IQ I+ DM M +APGVGLA PQIG+ LR
Sbjct: 7 GKILPIYITGHAVLHAPAKPV----TDFSGIQEIVRDMFATMFAAPGVGLAGPQIGLGLR 62
Query: 133 IIVLEDTKEYISYQS---KEEI---KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSV 186
I V T+ +Q ++ K +R N + DR EGCLS
Sbjct: 63 IFVYSYTEGDTLHQGVAINPDLLIPKGVPKRQTHKQQANNSTSCDEPDR-----EGCLSF 117
Query: 187 NGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPK 242
GY+ +ER + ++ D + +P V ATGW ARI QHE DHL GTLYVD++ K
Sbjct: 118 PGYQFPLERAPQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRLAQK 173
>sp|Q88EA7|DEF2_PSEPK Peptide deformylase 2 OS=Pseudomonas putida (strain KT2440) GN=def2
PE=3 SV=1
Length = 178
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD L A V +GS +Q +IDDM + MR GVGLAAPQ+G+ L++++
Sbjct: 4 DILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQLVIF 63
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
++ E + P +L LNP + S +EGCLSV G R VV R+
Sbjct: 64 -------GFERSERYPDAEAVPQTIL--LNPVITPTSSEVEDGWEGCLSVPGLRGVVPRF 114
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
I G+D G PI A G+ AR++QHECDHL G LY ++
Sbjct: 115 KHICYQGIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRI 157
>sp|Q886I1|DEF2_PSESM Peptide deformylase 2 OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=def2 PE=3 SV=1
Length = 179
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GD L A V GS ++ +I DM + M S GVGLAAPQIG+ L++++
Sbjct: 5 ILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLVIF- 63
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ E + P +L LNP + +EGCLSV G R +V+RY
Sbjct: 64 ------GFERSERYPQAEAVPQTIL--LNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQ 115
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
I G D DGQPI+ A G+ AR++QHECDHL G LY ++
Sbjct: 116 SIRYEGFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRIT 158
>sp|A5CF65|DEF_ORITB Peptide deformylase OS=Orientia tsutsugamushi (strain Boryong)
GN=def PE=3 SV=1
Length = 181
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 8/162 (4%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
+V A DP+L + + VD ++ I+ +IDDM++ M GVGLAAPQ+ V RIIVL+
Sbjct: 6 LVTAPDPILKKVSSPVDTV---NDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIVLD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+K I +E+ + L M+ NP +K S++T EGCLS+ V RY
Sbjct: 63 LSKVDI----EEDNITNSEYKYPLFMV-NPIVKAISNQTVTAKEGCLSLPKQAIEVSRYH 117
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+I+VT LD + ++A GW AR +QHE DHLDG L VD +
Sbjct: 118 EIQVTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYL 159
>sp|A4XNB3|DEF_PSEMY Peptide deformylase OS=Pseudomonas mendocina (strain ymp) GN=def
PE=3 SV=1
Length = 168
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + + I+ ++DDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVD---VVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + +D + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFESLTDEMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+++ LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVKIKALDRDGQPFELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>sp|Q051Q7|DEF_LEPBL Peptide deformylase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=def PE=3 SV=1
Length = 178
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD +L + + V E+ ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y + E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPDTPNVPE-----------RVILNPIITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 114 RPNKIRMQWMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 171
>sp|Q04RW4|DEF_LEPBJ Peptide deformylase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=def PE=3 SV=1
Length = 178
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ GD +L + + V E+ ++ + +I DM MR A GVGLAAPQIG+ +I+V+
Sbjct: 5 KILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVV 64
Query: 137 --EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
ED + Y + E +ILNP + + T+ F+EGCLSV G R VE
Sbjct: 65 GSEDNERYPDTPNVPE-----------RVILNPIITPLTKDTSGFWEGCLSVPGMRGYVE 113
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV-PKTFRIVENLD 251
R I + +D G G++A + QHECDHL G LYVD++ K F + LD
Sbjct: 114 RPNKIRMQWMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRLKDTKLFGFNDTLD 171
>sp|Q3Z8F6|DEF_DEHE1 Peptide deformylase OS=Dehalococcoides ethenogenes (strain 195)
GN=def PE=3 SV=1
Length = 167
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 25/159 (15%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE--DTK 140
+P+L + A++V P GS IQ +IDDM++ M+SA G GLAAPQ+GV LR+IV D K
Sbjct: 11 EPILRKKAKKV-PSIDGS--IQTLIDDMIETMKSADGAGLAAPQVGVSLRLIVFREPDAK 67
Query: 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIE 200
E +++NP++ KK + + EGCLS+ GY + R +
Sbjct: 68 EAT-------------------VLINPEIVKKEGQRQVT-EGCLSIPGYFGELTRAETVT 107
Query: 201 VTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
GLDR G+ ++ TG A++L+HE +HLDG LY+D +
Sbjct: 108 AKGLDRHGKAFRIKGTGVVAQLLEHETEHLDGILYIDHL 146
>sp|Q3ZXA9|DEF_DEHSC Peptide deformylase OS=Dehalococcoides sp. (strain CBDB1) GN=def
PE=3 SV=1
Length = 167
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 25/164 (15%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + +PVL + A++V P GS IQ +IDDM++ M SA G GLAAPQ+GV LR++V
Sbjct: 6 ICELPEPVLRKKAKKV-PSIDGS--IQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFR 62
Query: 138 --DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
DTKE +++NP++ KK + + EGCLS+ GY + R
Sbjct: 63 EPDTKEAT-------------------VLINPEIVKKEGQRQVT-EGCLSIPGYFGELTR 102
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ GLDR G+ ++ TG A++L+HE +HLDG LY+D +
Sbjct: 103 AETVTAKGLDRHGKACRIKGTGIVAQLLEHETEHLDGILYIDHL 146
>sp|A5FRA7|DEF_DEHSB Peptide deformylase OS=Dehalococcoides sp. (strain BAV1) GN=def
PE=3 SV=1
Length = 167
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 25/164 (15%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I + +PVL + A++V P GS IQ +IDDM++ M SA G GLAAPQ+GV LR++V
Sbjct: 6 ICELPEPVLRKKAKKV-PSIDGS--IQTLIDDMIETMNSADGAGLAAPQVGVSLRLVVFR 62
Query: 138 --DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVER 195
DTKE +++NP++ KK + + EGCLS+ GY + R
Sbjct: 63 EPDTKEAT-------------------VLINPEIIKKEGQRQVT-EGCLSIPGYFGELTR 102
Query: 196 YLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ GLDR G+ ++ TG A++L+HE +HLDG LY+D +
Sbjct: 103 AETVTAKGLDRHGKACRIKGTGIVAQLLEHETEHLDGILYIDHL 146
>sp|B0SQM2|DEF_LEPBP Peptide deformylase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=def PE=3 SV=1
Length = 179
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ G+P+L + + +V EI ++ + +I DM + MR A GVGLAAPQIGV +++V+
Sbjct: 5 KILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKKLVVV 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ Y E+ +ILNP++ S F+EGCLSV G R VER
Sbjct: 65 GQEDDNERYPGTPEVPN--------QIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERP 116
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENLD 251
I + D + G++A +LQHECDHL G LYVD++ K F E++D
Sbjct: 117 NKIRMKWRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTKLFGYNEDID 172
>sp|B0SHH1|DEF_LEPBA Peptide deformylase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=def PE=3 SV=1
Length = 179
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I++ G+P+L + + +V EI ++ + +I DM + MR A GVGLAAPQIGV +++V+
Sbjct: 5 KILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKKLVVV 64
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
+ Y E+ +ILNP++ S F+EGCLSV G R VER
Sbjct: 65 GQEDDNERYPGTPEVPN--------QIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERP 116
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM-VPKTFRIVENLD 251
I + D + G++A +LQHECDHL G LYVD++ K F E++D
Sbjct: 117 NKIRMKWRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTKLFGYNEDID 172
>sp|Q7VS88|DEF2_BORPE Peptide deformylase 2 OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=def2 PE=3 SV=1
Length = 170
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 19/165 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I++ DP LH+ A+ P + +RI+ ++ DM M APGVGLAA Q+ V R++
Sbjct: 3 LLSILRYPDPRLHKTAK---PVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ ++E DL +++NP++ KSD + EGCLSV G VE
Sbjct: 60 VIDVSEE----------------GNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVE 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I LD+ GQP + +A G A +QHE DHLDG ++V+ +
Sbjct: 104 RAARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYL 148
>sp|Q7W1V3|DEF1_BORPA Peptide deformylase 1 OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=def1 PE=3 SV=1
Length = 170
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 19/165 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I++ DP LH+ A+ P + +RI+ ++ DM M APGVGLAA Q+ V R++
Sbjct: 3 LLSILRYPDPRLHKTAK---PVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ ++E DL +++NP++ KSD + EGCLSV G VE
Sbjct: 60 VIDVSEE----------------GNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVE 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I LD+ GQP + +A G A +QHE DHLDG ++V+ +
Sbjct: 104 RAARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYL 148
>sp|Q7WQS9|DEF1_BORBR Peptide deformylase 1 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=def1 PE=3 SV=1
Length = 170
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 91/165 (55%), Gaps = 19/165 (11%)
Query: 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRII 134
L I++ DP LH+ A+ P + +RI+ ++ DM M APGVGLAA Q+ V R++
Sbjct: 3 LLSILRYPDPRLHKTAK---PVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVV 59
Query: 135 VLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVE 194
V++ ++E DL +++NP++ KSD + EGCLSV G VE
Sbjct: 60 VIDVSEE----------------GNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVE 103
Query: 195 RYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R I LD+ GQP + +A G A +QHE DHLDG ++V+ +
Sbjct: 104 RAARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYL 148
>sp|B8CWS6|DEF_HALOH Peptide deformylase OS=Halothermothrix orenii (strain H 168 / OCM
544 / DSM 9562) GN=def PE=3 SV=1
Length = 154
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 21/164 (12%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+I + GDPVL A+ V EI +++ ++ID+MV+ M A GVGLAAPQ+GV RIIV+
Sbjct: 5 QIRKIGDPVLRSKAKPVT--EI-TKKTLSLIDNMVETMYQAEGVGLAAPQVGVSKRIIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
DT E L+ ++NP++ + + + EGCLSV G V R
Sbjct: 62 -DTGE----------------GQGLIELINPEIIETEGKD-IMEEGCLSVPGQTGKVIRA 103
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMV 240
+ V GL+R G+ +++ A G+ AR QHE DHL+G L++DK+V
Sbjct: 104 SKVTVKGLNRGGKEVRIRAEGFLARAFQHEIDHLNGILFIDKVV 147
>sp|Q67PR5|DEF_SYMTH Peptide deformylase OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=def PE=3 SV=1
Length = 217
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 80/140 (57%), Gaps = 25/140 (17%)
Query: 103 IQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFD-- 160
I+ ++DDM + M +APGVGLAAPQ+GV R+IV++ P D
Sbjct: 28 IRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIVVD--------------------PQDGS 67
Query: 161 --LLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGW 218
L ++NP++ K ++ EGCLS+ G V RY ++V LDR G+ + +DA G+
Sbjct: 68 GQLYQLINPEIVK-AEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGKKVWIDAEGY 126
Query: 219 QARILQHECDHLDGTLYVDK 238
ARI QHE DHLDG LY DK
Sbjct: 127 LARIFQHEIDHLDGILYTDK 146
>sp|C1DFV8|DEF_AZOVD Peptide deformylase OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=def PE=3 SV=1
Length = 168
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E + I+ +IDDM + M +APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAK---PIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KNEPRVF----------INPEFEALTEELEPYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDGQP ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIRALDRDGQPFELVAEGLLAVCIQHECDHLNGKLFVDYL 148
>sp|Q8PG20|DEF2_XANAC Peptide deformylase 2 OS=Xanthomonas axonopodis pv. citri (strain
306) GN=def2 PE=3 SV=1
Length = 170
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S+ Q ++DDM M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ + E K + F +NP++ K L+ EGCLSV G A
Sbjct: 61 FMVIDISDE------KNLPQVF----------VNPEIVSKQGEQ-LYQEGCLSVPGIYAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQP ++ A G A +QHE DHLDG L+VD + P
Sbjct: 104 VSRADAITVRYLDRQGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSP 152
>sp|A4VFH8|DEF_PSEU5 Peptide deformylase OS=Pseudomonas stutzeri (strain A1501) GN=def
PE=3 SV=1
Length = 168
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 94/162 (58%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ VD + G I+ ++DDM + M APG+GLAA Q+ V R++V++
Sbjct: 6 ILEFPDPRLRTIAKPVDVVDDG---IRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ + E + F +NP+ + +D+ + EGCLSV G+ V+R
Sbjct: 63 LSED------RSEPRVF----------INPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYL 148
>sp|A5D1C0|DEF_PELTS Peptide deformylase OS=Pelotomaculum thermopropionicum (strain DSM
13744 / JCM 10971 / SI) GN=def PE=3 SV=1
Length = 155
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 95/172 (55%), Gaps = 29/172 (16%)
Query: 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL 136
+IV+ GD +L E A+EV ++ I ++D+M + M A GVGLAAPQIGV R+IV+
Sbjct: 5 KIVELGDRILKERAKEVPKI---NQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIVV 61
Query: 137 EDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERY 196
D E LL ++NP + + EGCLS+ G V R
Sbjct: 62 -DVGE------------------GLLEMINPVITSCAGHET-DSEGCLSIPGIVGDVTRA 101
Query: 197 LDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD------KMVPK 242
IEV GLDR G+P++V A G+ AR LQHE DHLDG L+++ K+VPK
Sbjct: 102 SVIEVKGLDRRGKPLEVKAKGYLARALQHEIDHLDGILFIEKAKNIRKLVPK 153
>sp|P63914|DEF_BRUSU Peptide deformylase OS=Brucella suis biovar 1 (strain 1330) GN=def
PE=3 SV=1
Length = 175
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E ++++ DM M APG+GLAA Q+G P+R++V++ KE
Sbjct: 11 DPVLRQVSK---PVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP + + SD+ + + EGCLS+ Y A VER ++V
Sbjct: 67 -------------GEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
D DG+P ++A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFK 163
>sp|P63913|DEF_BRUME Peptide deformylase OS=Brucella melitensis biotype 1 (strain 16M /
ATCC 23456 / NCTC 10094) GN=def PE=3 SV=1
Length = 175
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 24/170 (14%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ P E ++++ DM M APG+GLAA Q+G P+R++V++ KE
Sbjct: 11 DPVLRQVSK---PVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
P + +NP + + SD+ + + EGCLS+ Y A VER ++V
Sbjct: 67 -------------GEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVN 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVD-------KMVPKTFR 245
D DG+P ++A G A LQHE DHL+G L++D MV K F+
Sbjct: 114 YFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFK 163
>sp|Q7W4K0|DEF2_BORPA Peptide deformylase 2 OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=def2 PE=3 SV=1
Length = 176
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + ++ +IDDM + M A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + P +L NP ++ SD +EGCLSV G R +V RY
Sbjct: 62 ------GFERNDRYPDAPAVPRTIL--CNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I +G D GQ I+ +A G+ AR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLY 151
>sp|Q7W0Q0|DEF1_BORPE Peptide deformylase 1 OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=def1 PE=3 SV=1
Length = 176
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + ++ +IDDM + M A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + P +L NP ++ SD +EGCLSV G R +V RY
Sbjct: 62 ------GFERNDRYPDAPAVPRTIL--CNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I +G D GQ I+ +A G+ AR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLY 151
>sp|B9L0C1|DEF_THERP Peptide deformylase OS=Thermomicrobium roseum (strain ATCC 27502 /
DSM 5159 / P-2) GN=def PE=3 SV=1
Length = 176
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 14/162 (8%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I+ GDP L + A + + E ++ + D+ +R+A G+GLAAPQIGV RIIV+
Sbjct: 6 IITEGDPRLRQKAIRI---RVVDEEVRQLARDLWDTVRAARGLGLAAPQIGVLRRIIVVA 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+Y+ P L ++NP++ + S R + EGCLS+ G+ V R +
Sbjct: 63 IPPDYVEEGD----------PGVELTLINPEIVRASGRQ-VGLEGCLSIPGWYGEVPRSM 111
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ V LD DG+ ++V +G AR+LQHE DHL+G L+VD++
Sbjct: 112 HVTVKALDLDGREVRVKGSGLLARVLQHEIDHLEGILFVDRI 153
>sp|Q98D52|DEF_RHILO Peptide deformylase OS=Rhizobium loti (strain MAFF303099) GN=def
PE=3 SV=1
Length = 176
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DP+L + ++ P E ++ + DDM+ M APG+GLAA QIG PLR++V++ KE
Sbjct: 11 DPILRQVSK---PVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLVIDLAKE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
D P + I NP++ + ++ +++ EGCLS+ Y A VER + V
Sbjct: 67 ------------DETPAPHVFI-NPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVK 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
LDRDG+ +++A G A LQHE DHL+G L++D +
Sbjct: 114 YLDRDGKLQEMEAEGLMATCLQHEIDHLNGVLFIDHI 150
>sp|Q9I7A8|DEF_PSEAE Peptide deformylase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=def PE=1 SV=1
Length = 168
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 19/162 (11%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ DP L A+ P E+ + ++ +IDDM + M APG+GLAA Q+ V RI+V++
Sbjct: 6 ILEFPDPRLRTIAK---PVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
+++ K E + F +NP+ + ++ + EGCLSV G+ V+R
Sbjct: 63 LSED------KSEPRVF----------INPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQ 106
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ + LDRDG P + A G A +QHECDHL+G L+VD +
Sbjct: 107 KVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYL 148
>sp|Q88B43|DEF1_PSESM Peptide deformylase 1 OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=def1 PE=3 SV=1
Length = 168
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 22/154 (14%)
Query: 86 LHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISY 145
L +P VD G I+ ++DDM + M APG+GLAA Q+ V R++V++ +++ +
Sbjct: 17 LAKPVAMVDDG------IRQLVDDMFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSA- 69
Query: 146 QSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLD 205
P ++ +NP+++K +D + EGCLSV G+ V+R + V LD
Sbjct: 70 ------------P---MVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALD 114
Query: 206 RDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
RDG+P ++ A G A +QHECDHL+G L+VD +
Sbjct: 115 RDGKPYELVAEGLLAICIQHECDHLNGKLFVDYL 148
>sp|Q8UID1|DEF_AGRT5 Peptide deformylase OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=def PE=3 SV=1
Length = 170
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 17/157 (10%)
Query: 83 DPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEY 142
DPVL + ++ ++ ++ +E + + DDM++ M APG+GLAA QIGVP R++V++ +E
Sbjct: 11 DPVLRQQSKLIE--QVDAE-VLRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVARE- 66
Query: 143 ISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVT 202
++ P ++ +NP++ K SD + + EGCLS+ Y A VER + V
Sbjct: 67 ----------GEEKTP---VVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQ 113
Query: 203 GLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
+ RDG+ V+A G A LQHE DHL+G L++D +
Sbjct: 114 YVGRDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHI 150
>sp|Q9FCA2|DEF2_STRCO Peptide deformylase 2 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=def2 PE=3 SV=2
Length = 179
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 86/164 (52%), Gaps = 17/164 (10%)
Query: 82 GDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKE 141
GDPVLH EV + G E + +++D+ M +A GVGLAA Q+G +R+ V
Sbjct: 20 GDPVLHARCAEVT--DFGPE-LAALVEDLFATMYAAHGVGLAANQVGEAVRVFV------ 70
Query: 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEV 201
Y + D L ++NP+L + EGCLS+ G A ERY + V
Sbjct: 71 ---YDCPD-----DEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVV 122
Query: 202 TGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFR 245
TG G+P+ V TG+ AR LQHECDHL+G +Y D++ + R
Sbjct: 123 TGFTVAGEPVTVRGTGFFARCLQHECDHLEGRVYADRLTGRRHR 166
>sp|Q2S316|DEF_SALRD Peptide deformylase OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=def PE=3 SV=1
Length = 195
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 93/154 (60%), Gaps = 6/154 (3%)
Query: 87 HEPAR-EVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISY 145
HE R E DP + +E +Q +ID+M++ M +A G+GLAAPQ+G R+ V++ ++
Sbjct: 10 HEALRNETDPVQENTEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVVD-----LTP 64
Query: 146 QSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLD 205
+ E +A + P ++ +NP++ ++S+ TA EGCLS+ R V R I + D
Sbjct: 65 MADEIAEAGEPLPPQPMVFINPEIVEESEDTAEMEEGCLSIPEVREAVARPERIRMRYRD 124
Query: 206 RDGQPIKVDATGWQARILQHECDHLDGTLYVDKM 239
R+ + +++A G +R+LQHE DHLDG L+ D +
Sbjct: 125 REFEEQELEAGGMLSRVLQHERDHLDGVLFTDYL 158
>sp|Q7WG25|DEF2_BORBR Peptide deformylase 2 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=def2 PE=3 SV=1
Length = 176
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 11/158 (6%)
Query: 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLE 137
I++ GDP L A V+ + ++ +IDDM + M A GVGLAAPQIGV L++++
Sbjct: 5 ILKMGDPRLLRVAAPVE--RYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIF- 61
Query: 138 DTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYL 197
++ + P +L NP ++ S +EGCLSV G R +V RY
Sbjct: 62 ------GFERNDRYPDAPAVPRTIL--CNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYR 113
Query: 198 DIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235
I +G D GQ I+ +A G+ AR++QHECDHL G LY
Sbjct: 114 HIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLY 151
>sp|Q8P4F9|DEF2_XANCP Peptide deformylase 2 OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=def2 PE=3
SV=1
Length = 170
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132
A LP I++ DP L A VD E+ S Q ++DDM + M APG+GLAA Q+ V R
Sbjct: 2 ALLP-ILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 133 IIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAV 192
+V++ ++E + Q + +NP++ + ++ EGCLSV G A
Sbjct: 61 FMVIDVSEEKDAPQ----------------VFINPEIVTRQGEQ-VYQEGCLSVPGIFAD 103
Query: 193 VERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVP 241
V R I V LDR GQP ++ G A +QHE DHLDG L+VD + P
Sbjct: 104 VSRADAITVRYLDRQGQPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSP 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,373,285
Number of Sequences: 539616
Number of extensions: 4447311
Number of successful extensions: 11918
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 10931
Number of HSP's gapped (non-prelim): 493
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)