Query 024519
Match_columns 266
No_of_seqs 144 out of 1333
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3137 Peptide deformylase [T 100.0 3.5E-65 7.7E-70 450.5 13.9 256 1-264 10-267 (267)
2 COG0242 Def N-formylmethionyl- 100.0 1.1E-56 2.4E-61 386.6 12.8 157 73-245 1-157 (168)
3 PRK12846 peptide deformylase; 100.0 5.8E-56 1.3E-60 381.4 15.8 156 73-246 1-156 (165)
4 PRK14595 peptide deformylase; 100.0 6.7E-56 1.5E-60 380.2 14.7 150 73-243 1-150 (162)
5 PRK00150 def peptide deformyla 100.0 1E-54 2.2E-59 373.6 15.8 156 73-247 1-157 (165)
6 PRK14597 peptide deformylase; 100.0 7.2E-55 1.6E-59 375.1 14.8 148 77-246 2-149 (166)
7 TIGR00079 pept_deformyl peptid 100.0 2.6E-54 5.6E-59 370.0 15.3 154 76-247 2-155 (161)
8 PF01327 Pep_deformylase: Poly 100.0 1E-54 2.2E-59 370.0 11.5 156 75-244 1-156 (156)
9 PRK14598 peptide deformylase; 100.0 3.7E-54 8E-59 376.9 15.3 157 75-247 2-158 (187)
10 PRK14596 peptide deformylase; 100.0 5E-53 1.1E-57 372.9 14.9 164 75-245 2-168 (199)
11 cd00487 Pep_deformylase Polype 100.0 2.7E-52 5.8E-57 350.1 14.7 141 78-235 1-141 (141)
12 PRK09218 peptide deformylase; 100.0 2.2E-48 4.8E-53 325.2 13.0 133 75-235 2-136 (136)
13 COG4740 Predicted metalloprote 97.0 0.00044 9.6E-09 59.1 2.2 72 160-233 74-160 (176)
14 smart00666 PB1 PB1 domain. Pho 33.8 49 0.0011 24.2 3.0 30 197-226 39-68 (81)
15 PF13670 PepSY_2: Peptidase pr 30.8 54 0.0012 24.5 2.9 28 199-226 56-83 (83)
16 KOG0400 40S ribosomal protein 28.5 19 0.00041 30.7 -0.0 31 102-132 25-55 (151)
17 PF04986 Y2_Tnp: Putative tran 25.8 1.1E+02 0.0023 26.7 4.2 31 196-226 129-162 (183)
18 cd06404 PB1_aPKC PB1 domain is 25.3 49 0.0011 25.9 1.8 39 178-216 14-58 (83)
19 cd04327 ZnMc_MMP_like_3 Zinc-d 20.9 92 0.002 27.1 2.9 50 181-236 58-109 (198)
20 cd06396 PB1_NBR1 The PB1 domai 20.2 1.2E+02 0.0027 23.5 3.1 25 198-222 39-63 (81)
No 1
>KOG3137 consensus Peptide deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-65 Score=450.54 Aligned_cols=256 Identities=36% Similarity=0.513 Sum_probs=232.4
Q ss_pred CccccccccccccccccccccccCCccccccccccCCCCCCC-CCccccccccchhhHHHhhhhhhccCCC-Cccccccc
Q 024519 1 MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSN-DVTFSPHRKARTTSAISKAGWLLGLGQN-KKAKLPEI 78 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~m~~~~I 78 (266)
|+.|.|.|+++||.+.+-.|.. .+.++|.+.+.. .|.+...-.|.+++.....+|.++++++ ++.+..+|
T Consensus 10 a~~l~risL~~L~~~a~~~~~~--------~~~~vs~~~s~~~~nr~~~~~~s~r~s~~r~~r~~l~lg~~~~~~~~~~i 81 (267)
T KOG3137|consen 10 APPLSRISLPVLSRRATTLSAG--------YGRLVSTVTSCSTVNRTSPLTSSVRASVKRVSRKDLKLGSATDVETPLKI 81 (267)
T ss_pred cchhhhhhhhhhhhhhcccccc--------ccceecccccccccCccCCCcchhhHHHHHHhhhhcccCCcccCCChHHh
Confidence 6889999999999999888855 455555554322 2333333337778888999999999996 44677899
Q ss_pred cccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhhcCCC
Q 024519 79 VQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRP 158 (266)
Q Consensus 79 v~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~~~~~ 158 (266)
+++|||+||.+|++|++.+|.++++|+|+++|+++|+..+||||||||||++.|++|++....++++-++++...+++++
T Consensus 82 v~~gDPVLr~ka~~Vdraqig~e~lq~lvd~m~~VMr~~~gVGLsAPQvGvp~q~~vle~~~alcrecP~~~ra~rqmep 161 (267)
T KOG3137|consen 82 VEYGDPVLRAKAKRVDRAQIGDENLQNLVDAMFDVMRKTDGVGLSAPQVGVPVQLMVLEPAGALCRECPEPGRAERQMEP 161 (267)
T ss_pred hccCCHhhhhccccCChhhcCCHHHHHHHHHHHHHHHhCCCccccCcccCCceEEEEecChHHHHhcCCChhhhHhhccC
Confidence 99999999999999999899999999999999999999999999999999999999999999999998888877888999
Q ss_pred CCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCceeeeec
Q 024519 159 FDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDK 238 (266)
Q Consensus 159 ~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiLfiDr 238 (266)
++..||+||++.++|+..+.+.||||||||++|.|+||..|.|+++|.+|+.+++.++||.|||||||||||+|.||+||
T Consensus 162 f~l~V~VNP~lk~~s~klv~F~EGClSv~Gf~A~V~R~q~V~i~g~D~~Ger~~~~aSgw~ARI~QHE~DHL~G~Lf~Dk 241 (267)
T KOG3137|consen 162 FKLIVLVNPKLKKYSDKLVPFDEGCLSVPGFYAEVVRPQSVKIDGRDITGERFSISASGWPARIFQHEYDHLEGVLFFDK 241 (267)
T ss_pred CCeEEEecchHhhhcccccccccccccccchhhcccccceEEEeeecCCCCEEEEecccchHHHHHhHhhhhcceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHhhhhccCCccccCCCCCCCC
Q 024519 239 MVPKTFRIVENLDLPLAEGCPKLGVH 264 (266)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~c~~~~~~ 264 (266)
|++++|+++.+++++++++||++|++
T Consensus 242 M~~rtf~~V~~~~~~l~~~~~~~~~~ 267 (267)
T KOG3137|consen 242 MTDRTFDSVREELEALEKKYEEKTGL 267 (267)
T ss_pred cccHhHhHHHHhhhhhhhccccccCC
Confidence 99999999999999999999999874
No 2
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-56 Score=386.61 Aligned_cols=157 Identities=41% Similarity=0.661 Sum_probs=142.1
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHh
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIK 152 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~ 152 (266)
|++++|+.+|||+||++|++|.. + +++++++++||++||++++||||||||||+++|+||++...+. +
T Consensus 1 m~i~~Iv~~~~p~Lr~~a~~V~~--~-d~~l~~li~dM~etm~~~~GVGLAApQIGi~kri~vi~~~~~~------~--- 68 (168)
T COG0242 1 MAIREIVKYPDPRLRQVAKPVEE--V-DDELRQLIDDMLETMYAAEGVGLAAPQIGISKRIFVIDVEEDG------R--- 68 (168)
T ss_pred CCcccceeCCCHHHhcccccccc--c-CHHHHHHHHHHHHHHHhCCCeeeeehhcCceeeEEEEEccCcc------C---
Confidence 78899999999999999999953 3 6999999999999999999999999999999999999965320 0
Q ss_pred hhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCc
Q 024519 153 AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232 (266)
Q Consensus 153 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~G 232 (266)
+...+.+||||+|++.|......+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||||
T Consensus 69 ----~~~~~~vlINP~I~~~~~~~~~~~EGCLSvP~~~~~V~R~~~I~V~~~D~~G~~~~~~a~G~lA~~iQHEiDHLnG 144 (168)
T COG0242 69 ----PKEPPLVLINPEIISKSEETLTGEEGCLSVPGVRGEVERPERITVKYLDRNGKPQELEAEGLLARCIQHEIDHLNG 144 (168)
T ss_pred ----cCcCceEEECCEEeecCCcccccCcceEeecCceeeeecccEEEEEEEcCCCCEEEEEEcCceeEEeEeeccccCc
Confidence 0113479999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCChhHHh
Q 024519 233 TLYVDKMVPKTFR 245 (266)
Q Consensus 233 iLfiDrl~~~~~~ 245 (266)
+||+||+++..++
T Consensus 145 vlf~D~l~~~k~~ 157 (168)
T COG0242 145 VLFIDRLSPLKRD 157 (168)
T ss_pred EEeeeecChhhhh
Confidence 9999999974433
No 3
>PRK12846 peptide deformylase; Reviewed
Probab=100.00 E-value=5.8e-56 Score=381.44 Aligned_cols=156 Identities=43% Similarity=0.722 Sum_probs=141.8
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHh
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIK 152 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~ 152 (266)
|++++|+++|||+||++|++|+. +++++++++++||++||++++|+||||||||+++|+||++....
T Consensus 1 m~~~~I~~~~dpvLr~~~~~V~~--~~~~~~~~li~dM~~tm~~~~gvGLAApQVG~~~ri~vi~~~~~----------- 67 (165)
T PRK12846 1 MAVRPILKMPDPRLRRPAEPVTA--FDTEELQALIDDMFETMRAADGVGLAAPQIGVSLRVVVIDLGDD----------- 67 (165)
T ss_pred CCcceeeeCCChHHhccCccCCc--CChHHHHHHHHHHHHHHHhCCCcEEeccccCCceeEEEEEccCC-----------
Confidence 56788999999999999999974 43489999999999999999999999999999999999985321
Q ss_pred hhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCc
Q 024519 153 AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232 (266)
Q Consensus 153 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~G 232 (266)
..++.++|||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|
T Consensus 68 -----~~~~~vliNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 142 (165)
T PRK12846 68 -----RVPPTVLINPEITELSPEEEVGWEGCLSVPGLRGEVERPARVRVRAQDRDGKPIEIEAEGFLARVLQHEIDHLDG 142 (165)
T ss_pred -----CCcceEEECCEEEcCCCCEeccCCCCCccCCcceeecCcceEEEEEECCCCCEEEEEEeCHHHhHHhHHhHhcCC
Confidence 012479999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCChhHHhh
Q 024519 233 TLYVDKMVPKTFRI 246 (266)
Q Consensus 233 iLfiDrl~~~~~~~ 246 (266)
+||+||+++...+.
T Consensus 143 ~lf~Drl~~~~~~~ 156 (165)
T PRK12846 143 ILYTDRLSRLKRER 156 (165)
T ss_pred EeehhhCCHHHhHH
Confidence 99999999876543
No 4
>PRK14595 peptide deformylase; Provisional
Probab=100.00 E-value=6.7e-56 Score=380.17 Aligned_cols=150 Identities=24% Similarity=0.413 Sum_probs=139.1
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHh
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIK 152 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~ 152 (266)
|++++|+++|||+||++|++|+. + +++++++++||++||++++|+||||||||+++||||++...
T Consensus 1 M~~~~I~~~~dpvLr~~a~~V~~--~-~~~l~~li~dM~~tm~~~~gvGLAApQVG~~~ri~vi~~~~------------ 65 (162)
T PRK14595 1 MAIKKLVPASHPILTKKAQAVKT--F-DDSLKRLLQDLEDTMYAQEAAALCAPQIGQSLQVAIIDMEM------------ 65 (162)
T ss_pred CCcceeeeCCChHHhccceecCc--C-CHHHHHHHHHHHHHHhhCCCcEEechhcCCceeEEEEEccC------------
Confidence 67789999999999999999984 3 68999999999999999999999999999999999998521
Q ss_pred hhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCc
Q 024519 153 AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232 (266)
Q Consensus 153 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~G 232 (266)
.++.++|||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||.|||+|||+|||+|
T Consensus 66 ------~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~g~~Ar~~QHEiDHL~G 139 (162)
T PRK14595 66 ------EGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGNKVELTAYDDVARMILHIIDQMNG 139 (162)
T ss_pred ------CCceEEECCeeecCCCCEeeCCcCCccCCCcceEecCCCEEEEEEECCCCCEEEEEEeCHHHHHHHHHhHccCC
Confidence 02478999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCChhH
Q 024519 233 TLYVDKMVPKT 243 (266)
Q Consensus 233 iLfiDrl~~~~ 243 (266)
+||+||+++..
T Consensus 140 ~lf~Drl~~~~ 150 (162)
T PRK14595 140 IPFTERADRIL 150 (162)
T ss_pred EEEeeecCccc
Confidence 99999997654
No 5
>PRK00150 def peptide deformylase; Reviewed
Probab=100.00 E-value=1e-54 Score=373.65 Aligned_cols=156 Identities=40% Similarity=0.711 Sum_probs=140.1
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHh
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIK 152 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~ 152 (266)
|++++|+++|||+||++|++|+. + +++++++++||++||++++|+||||||||+++|+||++....
T Consensus 1 m~~~~I~~~~~~~Lr~~~~~V~~--~-~~~~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~----------- 66 (165)
T PRK00150 1 MAILPILRYGDPVLRKVAKPVEE--V-DDELRKLIDDMFETMYAAPGVGLAAPQVGVSKRIIVIDVEDK----------- 66 (165)
T ss_pred CCcceeeeCCChHHhccCcccCC--C-CHHHHHHHHHHHHHHHhCCCcEEEhhhcCcceeEEEEEccCC-----------
Confidence 56788999999999999999974 3 589999999999999999999999999999999999985211
Q ss_pred hhcCCCCCeEEEEcCeeEecCCcee-cCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcC
Q 024519 153 AFDRRPFDLLMILNPKLKKKSDRTA-LFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLD 231 (266)
Q Consensus 153 ~~~~~~~~~~vlINP~I~~~s~~~~-~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~ 231 (266)
+ .++.++|||+|++.|+... ..+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+
T Consensus 67 --~---~~~~v~iNP~I~~~s~~~~~~~~EGCLS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHE~DHL~ 141 (165)
T PRK00150 67 --E---GEPLVLINPEIISESSEEYLTYEEGCLSVPGVYGEVPRPERVTVKALDRDGKPFELEADGLLARCIQHEIDHLN 141 (165)
T ss_pred --C---CceeEEECCEEecCCCCeeccCCCCCCccCCeeeEecCcceeEEEEECCCCCEEEEEEeCHhhhHHhHHhHhhC
Confidence 0 0247999999999886665 489999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCChhHHhhh
Q 024519 232 GTLYVDKMVPKTFRIV 247 (266)
Q Consensus 232 GiLfiDrl~~~~~~~~ 247 (266)
|+||+||+++.....+
T Consensus 142 G~l~~Drl~~~~~~~~ 157 (165)
T PRK00150 142 GVLFIDRLSPLKRFRI 157 (165)
T ss_pred CEEeeeecChhHHHHH
Confidence 9999999998765433
No 6
>PRK14597 peptide deformylase; Provisional
Probab=100.00 E-value=7.2e-55 Score=375.13 Aligned_cols=148 Identities=36% Similarity=0.612 Sum_probs=137.0
Q ss_pred cccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhhcC
Q 024519 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDR 156 (266)
Q Consensus 77 ~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~~~ 156 (266)
+|+++|||+||++|++|+. + +++++++++||++||++++|+||||||||+++|+||++...
T Consensus 2 ~Iv~~~dp~Lr~~~~~V~~--~-~~~l~~li~dM~~tm~~~~GvGLAApQIGv~~ri~vi~~~~---------------- 62 (166)
T PRK14597 2 RIRLFGDPVLRKKAKPVTK--F-DDNLKKTIEEMIETMYHYDGVGLAAPQVGISLRFFVMDDGS---------------- 62 (166)
T ss_pred cEEECCChHHhccCcccCc--C-CHHHHHHHHHHHHHHHhCCCcEEehhhcCCceeEEEEEcCC----------------
Confidence 4899999999999999974 4 68999999999999999999999999999999999998521
Q ss_pred CCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCceeee
Q 024519 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYV 236 (266)
Q Consensus 157 ~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiLfi 236 (266)
++.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||+|+||+
T Consensus 63 ---~~~v~INP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~lfi 139 (166)
T PRK14597 63 ---GPKVVINPEIIEKSEEKEIAEEGCLSFPEIFEDVERSKWVKVRYQDERGEVVEELLEGYAARIFQHEYDHLNGVLFI 139 (166)
T ss_pred ---CceEEECCeeccCCCCcccCCCCCCccCCCceEecCCCEEEEEEECCCCCEEEEEEeCHHHHHHHHHhHhhCCEeeh
Confidence 13699999999999988778999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChhHHhh
Q 024519 237 DKMVPKTFRI 246 (266)
Q Consensus 237 Drl~~~~~~~ 246 (266)
||+++..+..
T Consensus 140 Drl~~~~~~~ 149 (166)
T PRK14597 140 DRLPPAKRLL 149 (166)
T ss_pred hccChhHHHH
Confidence 9999875543
No 7
>TIGR00079 pept_deformyl peptide deformylase. Peptide deformylase (EC 3.5.1.88), also called polypeptide deformylase, is a metalloenzyme that uses water to release formate from the N-terminal formyl-L-methionine of bacterial and chloroplast peptides. This enzyme should not be confused with formylmethionine deformylase (EC 3.5.1.31) which is active on free N-formyl methionine and has been reported from rat intestine.
Probab=100.00 E-value=2.6e-54 Score=370.01 Aligned_cols=154 Identities=37% Similarity=0.638 Sum_probs=138.9
Q ss_pred ccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhhc
Q 024519 76 PEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFD 155 (266)
Q Consensus 76 ~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~~ 155 (266)
++|+++|||+||++|++|+. + +++++++++||++||++++|+||||||||+++||||++.... + .
T Consensus 2 ~~I~~~~dp~Lr~~~~~V~~--~-~~~~~~l~~dM~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~-------~-----~ 66 (161)
T TIGR00079 2 LEVVHYPDDVLRTIAKPVEK--V-DDKIRQQLDDMIETMYAEEGIGLAAPQVGIWKRMFVIHLEDD-------D-----K 66 (161)
T ss_pred CceEECCChHHhccccccCC--C-CHHHHHHHHHHHHHHHhCCCeEEehhhcCcceeEEEEEccCC-------c-----C
Confidence 46999999999999999974 3 689999999999999999999999999999999999985321 0 0
Q ss_pred CCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCceee
Q 024519 156 RRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235 (266)
Q Consensus 156 ~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiLf 235 (266)
..+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||+|+||
T Consensus 67 ---~~~~v~iNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~l~ 143 (161)
T TIGR00079 67 ---EDPLVLINPKIIETSGEKSGLEEGCLSVPGVYGYVPRPEKVKIRGFDRFGKPFTIEASGLLARCIQHEMDHLNGVLF 143 (161)
T ss_pred ---ccceEEECCeeccCCCcEeccCcCCCccCCccceecChhheEEEEECCCCCEEEEEEeCHHHhHHhHHhHhcCCEee
Confidence 12469999999999998877889999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHhhh
Q 024519 236 VDKMVPKTFRIV 247 (266)
Q Consensus 236 iDrl~~~~~~~~ 247 (266)
+||+++.....+
T Consensus 144 ~D~l~~~~~~~~ 155 (161)
T TIGR00079 144 VDRISPLKPEKE 155 (161)
T ss_pred eeecChhhhhHH
Confidence 999997655443
No 8
>PF01327 Pep_deformylase: Polypeptide deformylase; InterPro: IPR023635 Peptide deformylase (PDF) is an essential metalloenzyme required for the removal of the formyl group at the N terminus of nascent polypeptide chains in eubacteria: 3.5.1.88 from EC []. The enzyme acts as a monomer and binds a single zinc ion, catalysing the reaction:: N-formyl-L-methionine + H2O = formate + methionyl peptide Catalytic efficiency strongly depends on the identity of the bound metal []. The structure of these enzymes is known [, ]. PDF, a member of the zinc metalloproteases family, comprises an active core domain of 147 residues and a C-terminal tail of 21 residue. The 3D fold of the catalytic core has been determined by X-ray crystallography and NMR. Overall, the structure contains a series of anti-parallel beta- strands that surround two perpendicular alpha-helices. The C-terminal helix contains the characteristic HEXXH motif of metalloenzymes, which is crucial for activity. The helical arrangement, and the way the histidine residues bind the zinc ion, is reminiscent of other metalloproteases, such as thermolysin or metzincins. However, the arrangement of secondary and tertiary structures of PDF, and the positioning of its third zinc ligand (a cysteine residue), are quite different. These discrepancies, together with notable biochemical differences, suggest that PDF constitutes a new class of zinc-metalloproteases. [].; PDB: 2OS1_A 2OS0_A 1LME_B 3QU1_A 1N5N_B 1S17_B 1LRY_A 1IX1_A 1WS1_A 1WS0_A ....
Probab=100.00 E-value=1e-54 Score=370.03 Aligned_cols=156 Identities=46% Similarity=0.735 Sum_probs=132.6
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~ 154 (266)
+++|+++|||+||++|++|+ +++++++++++++|++||++++|+||||||||+++|+||++......
T Consensus 1 ~~~I~~~~dp~Lr~~a~~V~--~~~~~~~~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~----------- 67 (156)
T PF01327_consen 1 VRPIVQYGDPVLRQKAQPVD--DFDDEEIKQLIDDMFETMYAANGVGLAAPQIGIPKRIFVIDIPDEKP----------- 67 (156)
T ss_dssp GGGSE-TTSGGGGSB-BB-S--SSSHHHHHHHHHHHHHHHHHTTBSEEEGGGGTS-BSEEEEEEETTSS-----------
T ss_pred CCCEEECCChHHhccCeeCC--CCChHHHHHHHHHHHHHHHHhccceEehhhcCchheEEEEecCcccc-----------
Confidence 46899999999999999998 35556699999999999999999999999999999999998643210
Q ss_pred cCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCcee
Q 024519 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234 (266)
Q Consensus 155 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiL 234 (266)
.......+||||+|+..|+++...||||||+||+++.|+||.+|+|+|+|++|++++++++||.|||||||+|||+|+|
T Consensus 68 -~~~~~~~v~INP~I~~~s~~~~~~~EgClS~p~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l 146 (156)
T PF01327_consen 68 -EPSEPETVLINPKITSSSEETVEDWEGCLSVPGIRGKVERPKKITVRYYDLDGKPIELEAEGFLARCIQHEIDHLNGIL 146 (156)
T ss_dssp -SESEEEEEEEEEEEEESSEEEEEEEEEETTSTTEEEEEEEESEEEEEEEETTS-EEEEEEEHHHHHHHHHHHHHHTT--
T ss_pred -cCCccceEEECCEEecccCCcCccccCCCccCCccccCCCcceEEEEEECCCCeEEEEEEccccEEeeeehhhhhCCEe
Confidence 0000115999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCChhHH
Q 024519 235 YVDKMVPKTF 244 (266)
Q Consensus 235 fiDrl~~~~~ 244 (266)
|+|||++.++
T Consensus 147 ~~Dr~~~~~r 156 (156)
T PF01327_consen 147 FIDRLSPKKR 156 (156)
T ss_dssp GGGGSSHHHH
T ss_pred hhhccCccCC
Confidence 9999998753
No 9
>PRK14598 peptide deformylase; Provisional
Probab=100.00 E-value=3.7e-54 Score=376.93 Aligned_cols=157 Identities=34% Similarity=0.504 Sum_probs=138.3
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~ 154 (266)
+++|+++|||+||++|++|+. + +++++++++||++||++++|+||||||||+++||||++..... .
T Consensus 2 i~~Iv~~~dpvLr~~~~~V~~--~-~~~l~~li~dM~~tm~~~~GvGLAApQVG~~~Ri~vid~~~~~-------~---- 67 (187)
T PRK14598 2 ILPINTYSDEVLRQKAKPLKG--V-DAEIEELIASMFESMYNASGIGLAAPQVGRSLRLLVVDVSCMK-------E---- 67 (187)
T ss_pred CcceeeCCChHHhccCcccCC--C-CHHHHHHHHHHHHHHHhCCCeEEehhhcCCceeEEEEEccccc-------c----
Confidence 567999999999999999974 4 6899999999999999999999999999999999999863210 0
Q ss_pred cCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCcee
Q 024519 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234 (266)
Q Consensus 155 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiL 234 (266)
.....+.+||||+|++.|+. ...+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||+|+|
T Consensus 68 -~~~~~~~v~INP~I~~~s~~-~~~~EGCLSvPg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~L 145 (187)
T PRK14598 68 -YEDEKPMVVINPHILAVKGY-NAMEEGCLSVPGVQGDVVRPSSITLKYRDEHFEERTEEFSGMMARVLQHEIDHLDGTL 145 (187)
T ss_pred -cccccceEEECCeeccCCCc-ccCCCCCccCCCcceEEeccCEEEEEEECCCCCEEEEEEecHhhhHHhHhhhccCCEE
Confidence 00113479999999998875 4589999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCChhHHhhh
Q 024519 235 YVDKMVPKTFRIV 247 (266)
Q Consensus 235 fiDrl~~~~~~~~ 247 (266)
|+||+++.....+
T Consensus 146 fiDrl~~~~~~~~ 158 (187)
T PRK14598 146 FVDRMQKRDRRKI 158 (187)
T ss_pred EEEecChhhhHHH
Confidence 9999997765533
No 10
>PRK14596 peptide deformylase; Provisional
Probab=100.00 E-value=5e-53 Score=372.90 Aligned_cols=164 Identities=35% Similarity=0.536 Sum_probs=135.8
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEec-CchhhccchhHHHhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLED-TKEYISYQSKEEIKA 153 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~-~~~~~~~~~~e~~~~ 153 (266)
+++|+++|||+||++|++|+. + ++++++|++||++||++++||||||||||+++||||++. .... ........
T Consensus 2 i~~I~~~gdpvLr~~a~pV~~--~-~~~l~~li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~---~~~~~~~~ 75 (199)
T PRK14596 2 VYPIRLYGDPVLRRKARPVQD--F-DQGIRRLAEDMLETMFEARGVGLAAPQIGLSVRLFVAVEYADDE---EEEEGEEA 75 (199)
T ss_pred CccEeeCCChHHhCcCcccCC--C-CHHHHHHHHHHHHHHHhCCCcEEehhhcCCceeEEEEEeccCcc---cccccccc
Confidence 568999999999999999974 3 699999999999999999999999999999999999972 1110 00000000
Q ss_pred hcCCC-CCeEEEEcCeeEecCCceecCcccCCccCCCce-eeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcC
Q 024519 154 FDRRP-FDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA-VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLD 231 (266)
Q Consensus 154 ~~~~~-~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~-~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~ 231 (266)
..... ..+.+||||+|+..|+.. .++||||||||+++ .|+||.+|+|+|+|++|++++++++||+|||||||+|||+
T Consensus 76 ~~~~~~~~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~ 154 (199)
T PRK14596 76 PLRSRVLREYVMVNPVITYRKGDQ-SGQEGCLSIPGLYEEGVPRARQVRVEYQDLDGQKRTLEAEGYLARVFQHEIDHLD 154 (199)
T ss_pred ccccccccceEEECCEEecCCCcc-cCCcCcccccCccceeeeccCEEEEEEECCCCCEEEEEEeChhhhhhhhhhhhcC
Confidence 00000 124799999999977764 68999999999985 8999999999999999999999999999999999999999
Q ss_pred ceeeeecCChhHHh
Q 024519 232 GTLYVDKMVPKTFR 245 (266)
Q Consensus 232 GiLfiDrl~~~~~~ 245 (266)
|+||+||+++..+.
T Consensus 155 GiLfiDrl~~~~~~ 168 (199)
T PRK14596 155 GILFFDRLPKAKRE 168 (199)
T ss_pred CEeehhcCCHHHHH
Confidence 99999999976543
No 11
>cd00487 Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.
Probab=100.00 E-value=2.7e-52 Score=350.13 Aligned_cols=141 Identities=48% Similarity=0.766 Sum_probs=129.2
Q ss_pred ccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhhcCC
Q 024519 78 IVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRR 157 (266)
Q Consensus 78 Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~~~~ 157 (266)
|+++|||+||++|++|+. + +++++++++||++||++++|+||||||||+++||||++.... ..
T Consensus 1 iv~~~~p~Lr~~a~~v~~--~-~~~~~~li~dm~~tm~~~~gvGLAApQIG~~~ri~vv~~~~~--------------~~ 63 (141)
T cd00487 1 IVQYPDPVLRKKAKPVEE--F-DDELKQLIDDMFETMYAAPGVGLAAPQIGVSKRIFVIDVPDE--------------EN 63 (141)
T ss_pred CeECCChHHhccccccCC--C-CHHHHHHHHHHHHHHHhCCCcEEEhhhcCCceeEEEEEcccc--------------cc
Confidence 689999999999999974 3 489999999999999999999999999999999999986421 00
Q ss_pred CCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCceee
Q 024519 158 PFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLY 235 (266)
Q Consensus 158 ~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiLf 235 (266)
..++.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++.+++||.|||+|||+|||+|+||
T Consensus 64 ~~~~~v~INP~I~~~s~~~~~~~EgCLS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~l~ 141 (141)
T cd00487 64 KEPPLVLINPEIIESSGETEYGEEGCLSVPGYRGEVERPKKVTVRYLDEDGNPIELEAEGFLARCIQHEIDHLNGILF 141 (141)
T ss_pred cccceEEECCeEeccCCCEeeCCcCCcCcCCcceEecCcCEEEEEEECCCCCEEEEEEeCHhhhhHhHHhHhhCCEEC
Confidence 123579999999999999887899999999999999999999999999999999999999999999999999999997
No 12
>PRK09218 peptide deformylase; Validated
Probab=100.00 E-value=2.2e-48 Score=325.24 Aligned_cols=133 Identities=32% Similarity=0.457 Sum_probs=119.7
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhC--CceeEecccCCccceEEEEecCchhhccchhHHHh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSA--PGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIK 152 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~--~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~ 152 (266)
+++|+. |||+||++|++|+. + + .++++||++||+++ +|+||||||||+++|+||++...
T Consensus 2 ~~~i~~-~~~~Lr~~~~~V~~--~-~---~~li~dM~~tm~~~~~~gvGLAApQIGv~~ri~vi~~~~------------ 62 (136)
T PRK09218 2 IKPIVK-DQLFLSQKSQPATK--E-D---LQLAQDLQDTLLANRDECVGMAANMIGVQKRIIIFSLGF------------ 62 (136)
T ss_pred cceecc-CCHHHcCcCccCCh--h-H---HHHHHHHHHHHHhcCCCCEEEEHHHCCcCceEEEEECCC------------
Confidence 467889 99999999999974 2 2 39999999999998 58999999999999999998521
Q ss_pred hhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCc
Q 024519 153 AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232 (266)
Q Consensus 153 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~G 232 (266)
.+.+||||+|++.|+.. ..+|||||+||++ .|+||.+|+|+|+|++|++++.+++||+|||||||+|||||
T Consensus 63 -------~~~vlINP~I~~~s~~~-~~~EGCLS~P~~~-~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G 133 (136)
T PRK09218 63 -------VPVVMFNPVIVSKSGPY-ETEEGCLSLTGER-PTKRYEEITVKYLDRNWREQTQTFTGFTAQIIQHELDHCEG 133 (136)
T ss_pred -------CcEEEECCEEecCCCce-eCCccceecCCCc-cccCcceeEEEEECCCCCEEEEEEeChhhhhhhhHhhccCC
Confidence 13699999999988876 5789999999998 79999999999999999999999999999999999999999
Q ss_pred eee
Q 024519 233 TLY 235 (266)
Q Consensus 233 iLf 235 (266)
+|+
T Consensus 134 ~L~ 136 (136)
T PRK09218 134 ILI 136 (136)
T ss_pred EEC
Confidence 985
No 13
>COG4740 Predicted metalloprotease [General function prediction only]
Probab=96.95 E-value=0.00044 Score=59.14 Aligned_cols=72 Identities=32% Similarity=0.431 Sum_probs=55.8
Q ss_pred CeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEE-------C--------CCCCeEEEEEcchhhhHHh
Q 024519 160 DLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGL-------D--------RDGQPIKVDATGWQARILQ 224 (266)
Q Consensus 160 ~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~-------D--------~~G~~~~~~~~G~~AR~~Q 224 (266)
+.+.|+||+|++..+ +++-.|-|-+-- -+-.|.||.+|+|+.. | ..-++-++.++|..|--+-
T Consensus 74 ~~YLflNPeIi~~EG-t~~RlEKCG~r~-eRelv~RPyR~~vr~d~~l~a~vdPg~~~IRvreL~k~~lrl~G~pAy~~a 151 (176)
T COG4740 74 DLYLFLNPEIIRAEG-TLTRLEKCGRRR-ERELVKRPYRLEVRHDGGLIARVDPGRRRIRVRELDKGTLRLEGIPAYNLA 151 (176)
T ss_pred heeeeeChhheeccc-eEEehhhhcchH-HHHHhcCCeEEEEecCceEEEEECCccceEEEEecCCCeEEEecCccchhH
Confidence 357899999999877 456789998753 4557889999888753 2 1233456789999999999
Q ss_pred hhhhhcCce
Q 024519 225 HECDHLDGT 233 (266)
Q Consensus 225 HEiDHL~Gi 233 (266)
||+.||+|-
T Consensus 152 HEleHLeg~ 160 (176)
T COG4740 152 HELEHLEGD 160 (176)
T ss_pred HHHHHhhcC
Confidence 999999983
No 14
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=33.84 E-value=49 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=25.3
Q ss_pred cceEEEEECCCCCeEEEEEcchhhhHHhhh
Q 024519 197 LDIEVTGLDRDGQPIKVDATGWQARILQHE 226 (266)
Q Consensus 197 ~~I~V~y~D~~G~~~~~~~~G~~AR~~QHE 226 (266)
..+.++|.|.+|..+.+.-+.-+..++++=
T Consensus 39 ~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~ 68 (81)
T smart00666 39 QSFTLKYQDEDGDLVSLTSDEDLEEAIEEY 68 (81)
T ss_pred CCeEEEEECCCCCEEEecCHHHHHHHHHHH
Confidence 578999999999999998888777777763
No 15
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=30.85 E-value=54 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=23.6
Q ss_pred eEEEEECCCCCeEEEEEcchhhhHHhhh
Q 024519 199 IEVTGLDRDGQPIKVDATGWQARILQHE 226 (266)
Q Consensus 199 I~V~y~D~~G~~~~~~~~G~~AR~~QHE 226 (266)
.+|+..|.+|+.+++.++.-..+|++.|
T Consensus 56 yev~~~~~dG~~~ev~vD~~tG~V~~~k 83 (83)
T PF13670_consen 56 YEVEARDKDGKKVEVYVDPATGEVVKEK 83 (83)
T ss_pred EEEEEEECCCCEEEEEEcCCCCeEeecC
Confidence 6788999999999999988877776654
No 16
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=28.54 E-value=19 Score=30.73 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhCCceeEecccCCccce
Q 024519 102 RIQNIIDDMVKVMRSAPGVGLAAPQIGVPLR 132 (266)
Q Consensus 102 el~~li~dM~~tM~~~~GvGLAAPQIGv~~r 132 (266)
-++...|||.+.+....--||.++|||+-.|
T Consensus 25 WlK~~~ddvkeqI~K~akKGltpsqIGviLR 55 (151)
T KOG0400|consen 25 WLKLTADDVKEQIYKLAKKGLTPSQIGVILR 55 (151)
T ss_pred HHhcCHHHHHHHHHHHHHcCCChhHceeeee
Confidence 3555678888888877778999999998665
No 17
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=25.81 E-value=1.1e+02 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=21.6
Q ss_pred ccceEEEEECCC-CCeEEE--EEcchhhhHHhhh
Q 024519 196 YLDIEVTGLDRD-GQPIKV--DATGWQARILQHE 226 (266)
Q Consensus 196 ~~~I~V~y~D~~-G~~~~~--~~~G~~AR~~QHE 226 (266)
-..|+.+|.|.. ++...+ ....|.+|++||=
T Consensus 129 ~~~V~f~y~d~~~~~~~~~~l~~~efi~r~l~Hv 162 (183)
T PF04986_consen 129 DGTVTFRYKDHRTKKTKTLTLSAEEFIRRLLQHV 162 (183)
T ss_pred cceeEEEEEcCCCCcEEEEEechHHHHHHHHhhc
Confidence 455688888863 444444 5566999999994
No 18
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.26 E-value=49 Score=25.89 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=26.9
Q ss_pred cCcccCCccCCCceee------ccccceEEEEECCCCCeEEEEEc
Q 024519 178 LFFEGCLSVNGYRAVV------ERYLDIEVTGLDRDGQPIKVDAT 216 (266)
Q Consensus 178 ~~~EGCLSvPg~~~~V------~R~~~I~V~y~D~~G~~~~~~~~ 216 (266)
...+.++|+..+...| .+....+++|.|++|.++++.-+
T Consensus 14 t~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~ 58 (83)
T cd06404 14 TSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQ 58 (83)
T ss_pred EEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCH
Confidence 3445566665544333 35678899999999999988654
No 19
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=20.91 E-value=92 Score=27.09 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=28.1
Q ss_pred ccCCccCCCceeeccccceEEEE--ECCCCCeEEEEEcchhhhHHhhhhhhcCceeee
Q 024519 181 EGCLSVNGYRAVVERYLDIEVTG--LDRDGQPIKVDATGWQARILQHECDHLDGTLYV 236 (266)
Q Consensus 181 EGCLSvPg~~~~V~R~~~I~V~y--~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiLfi 236 (266)
.||-|.-|..+...+....++.. ....+ .....-.+++||+-|.-|...-
T Consensus 58 ~Gc~S~vG~~~~~~~~~~~t~~l~~~~~~~------~~~~~~~~i~HElgHaLG~~HE 109 (198)
T cd04327 58 DGYWSYVGTDALLIGADAPTMNLGWFTDDT------PDPEFSRVVLHEFGHALGFIHE 109 (198)
T ss_pred CCCCCCcCCcccccCCCCceeeeeeecCCC------chhhHHHHHHHHHHHHhcCccc
Confidence 48999888754322333333322 11111 0112335999999999998653
No 20
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=20.18 E-value=1.2e+02 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCeEEEEEcchhhhH
Q 024519 198 DIEVTGLDRDGQPIKVDATGWQARI 222 (266)
Q Consensus 198 ~I~V~y~D~~G~~~~~~~~G~~AR~ 222 (266)
.+.++|.|.+|+++.+.-+.-+--|
T Consensus 39 ~f~lKYlDde~e~v~lssd~eLeE~ 63 (81)
T cd06396 39 DIQIKYVDEENEEVSVNSQGEYEEA 63 (81)
T ss_pred cceeEEEcCCCCEEEEEchhhHHHH
Confidence 7899999999999999876655433
Done!