Query 024519
Match_columns 266
No_of_seqs 144 out of 1333
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxz_A PDF, peptide deformylas 100.0 1.2E-63 4E-68 438.7 14.0 193 73-265 1-193 (197)
2 3g5k_A Peptide deformylase, mi 100.0 5.9E-60 2E-64 410.9 13.3 176 72-247 1-176 (183)
3 3u04_A Peptide deformylase 1; 100.0 1.2E-57 4.1E-62 398.5 15.6 172 73-247 3-177 (190)
4 3dld_A Peptide deformylase; ba 100.0 8.1E-58 2.8E-62 393.8 12.7 161 75-246 2-162 (171)
5 4dr9_A Peptide deformylase; hy 100.0 1.6E-57 5.4E-62 398.2 14.0 166 72-254 15-180 (192)
6 1ws0_A Peptide deformylase 1; 100.0 1.6E-57 5.6E-62 386.8 12.5 152 73-245 1-152 (156)
7 1n5n_A Peptide deformylase; me 100.0 7E-57 2.4E-61 390.7 16.5 158 71-247 11-168 (180)
8 3uwb_A RIIA-RIIB membrane-asso 100.0 2.9E-57 9.9E-62 384.6 12.9 152 75-243 2-153 (154)
9 1y6h_A Peptide deformylase; op 100.0 2.1E-57 7.2E-62 393.1 11.9 162 75-245 2-163 (177)
10 1xeo_A Peptide deformylase; co 100.0 1.8E-56 6.1E-61 384.5 16.0 153 75-247 2-154 (168)
11 3qu1_A Peptide deformylase 2; 100.0 1.1E-56 3.9E-61 386.7 13.9 155 72-247 3-158 (171)
12 3e3u_A Peptide deformylase; me 100.0 3E-56 1E-60 391.6 15.5 162 73-247 1-170 (197)
13 1rl4_A Formylmethionine deform 100.0 2.7E-56 9.4E-61 389.3 14.6 158 74-247 7-164 (188)
14 1lme_A PDF, peptide deformylas 100.0 3.6E-56 1.2E-60 384.9 14.3 152 74-247 12-163 (176)
15 3pn3_A Peptide deformylase 1B, 100.0 9.1E-56 3.1E-60 387.2 16.0 155 77-248 2-156 (193)
16 2w3t_A Peptide deformylase; pr 100.0 1E-55 3.4E-60 385.6 15.9 152 75-246 2-153 (188)
17 2ew5_A Peptide deformylase; in 100.0 8.1E-56 2.8E-60 384.4 14.7 158 75-247 2-159 (181)
18 1v3y_A Peptide deformylase; pr 100.0 3.4E-55 1.2E-59 383.6 14.8 164 75-247 2-167 (192)
19 2okl_A Peptide deformylase 2; 100.0 7E-55 2.4E-59 379.6 13.6 156 73-244 3-173 (185)
20 2os0_A Peptide deformylase; PD 100.0 1.5E-54 5.1E-59 378.4 14.2 159 73-244 2-176 (188)
21 3svj_P Peptide deformylase 3; 100.0 1.5E-54 5.2E-59 382.4 13.4 165 73-245 14-193 (203)
22 1lm4_A Peptide deformylase PDF 100.0 8.9E-54 3E-58 375.2 14.7 156 74-244 14-184 (194)
23 3l87_A Peptide deformylase; hy 100.0 8.1E-54 2.8E-58 385.1 13.2 166 73-245 48-228 (238)
24 2kvz_A ISPE; structural genomi 27.0 41 0.0014 25.1 2.7 41 195-235 5-47 (85)
25 2bkf_A Zinc-finger protein NBR 21.4 67 0.0023 24.3 2.9 21 197-217 44-64 (87)
No 1
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=100.00 E-value=1.2e-63 Score=438.66 Aligned_cols=193 Identities=78% Similarity=1.280 Sum_probs=170.0
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHh
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIK 152 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~ 152 (266)
|++++|+++|||+||++|++|+..++.++++++|++||++||++++||||||||||+++|||||+...++.++.+++..+
T Consensus 1 M~~~~I~~~gdpvLr~~a~~V~~~~~~~~~l~~Li~dM~eTM~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~ 80 (197)
T 1zxz_A 1 MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEIL 80 (197)
T ss_dssp -CCCCCCCTTSGGGTSCCBCCCTTTTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHH
T ss_pred CCccCcccCCCHHHhcCceeCCcccCCCHHHHHHHHHHHHHHHhCCCcEEEccccCcceEEEEEEcCccccccccccccc
Confidence 78899999999999999999986556679999999999999999999999999999999999998653322222222222
Q ss_pred hhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCc
Q 024519 153 AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232 (266)
Q Consensus 153 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~G 232 (266)
..+..+.++.+||||+|+..|+++...+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|
T Consensus 81 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~G 160 (197)
T 1zxz_A 81 AQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDG 160 (197)
T ss_dssp HTTCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCceEEECCEEEecCCCEEeeeeCCcccCCeeeeEecccEEEEEEECCCCCEEEEEEeChhhhHHHHHHHHhCC
Confidence 22233334689999999999998878899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCChhHHhhhhccCCccccCCCCCCCCC
Q 024519 233 TLYVDKMVPKTFRIVENLDLPLAEGCPKLGVHE 265 (266)
Q Consensus 233 iLfiDrl~~~~~~~~~~~~~~~~~~c~~~~~~~ 265 (266)
+||+||+++++++.+++++.+++..||++|.|.
T Consensus 161 iLfiDrl~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (197)
T 1zxz_A 161 NLYVDKMVPRTFRTVDNLDLPLAEGCPKLGSHH 193 (197)
T ss_dssp CCGGGTBCTTCCEEGGGTTSCCCTTCCCSEECC
T ss_pred EeeeeecCHHHHHHHHHHhhccccCCCcccccc
Confidence 999999999999999999999999999999874
No 2
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal-bindi mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Probab=100.00 E-value=5.9e-60 Score=410.85 Aligned_cols=176 Identities=38% Similarity=0.664 Sum_probs=150.8
Q ss_pred ccccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHH
Q 024519 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI 151 (266)
Q Consensus 72 ~m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~ 151 (266)
+|++++|+++|||+||++|++|+..++.++++++|++||++||++++||||||||||+++||||++.........+.+..
T Consensus 1 ~M~~~~I~~~gdpvLr~~a~~V~~~~~~~~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~ 80 (183)
T 3g5k_A 1 HMSFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQR 80 (183)
T ss_dssp CCCCCCCCCTTCGGGTSCCBCCCGGGTTCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHTSCHHHH
T ss_pred CCcccceeecCChHHhcCCeeCCcccCCCHHHHHHHHHHHHHHHHcCCeEEeccccCCceeEEEEEcCcccccccccccc
Confidence 48999999999999999999998645557999999999999999999999999999999999999865321100001111
Q ss_pred hhhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcC
Q 024519 152 KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLD 231 (266)
Q Consensus 152 ~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~ 231 (266)
...+..+.++.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+
T Consensus 81 ~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~ 160 (183)
T 3g5k_A 81 ALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQ 160 (183)
T ss_dssp HHHTCCCEEEEEEEEEEEEEEEEEEEEEEECCTTSTTEEEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHT
T ss_pred ccccccccCceEEECCeEEecCCCEEecccCccCcCCccEEeeCcceeEEEEECCCCCEEEEEEeChhheehhhHHHHhC
Confidence 11112233467999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCChhHHhhh
Q 024519 232 GTLYVDKMVPKTFRIV 247 (266)
Q Consensus 232 GiLfiDrl~~~~~~~~ 247 (266)
|+||+|||+++++..+
T Consensus 161 GiLfiDrl~~~s~~~~ 176 (183)
T 3g5k_A 161 GCLFIDKMDSRTFTNV 176 (183)
T ss_dssp TCCGGGTSCGGGCEET
T ss_pred CEeEEEEeCHHHhCcc
Confidence 9999999999988765
No 3
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=100.00 E-value=1.2e-57 Score=398.49 Aligned_cols=172 Identities=33% Similarity=0.487 Sum_probs=145.4
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHh
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIK 152 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~ 152 (266)
|++++|+++|||+||++|++|+. + ++++++|++||++||++++||||||||||+++||||++...........+..+
T Consensus 3 M~i~~I~~~gdpvLr~~a~pV~~--~-d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~ 79 (190)
T 3u04_A 3 MSVLSIVTVPDKRLSLCSEEVEK--V-DQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPEEFEDSEDIENVE 79 (190)
T ss_dssp CCCCCCCCTTCGGGGSCCBCCSC--C-CHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECCC-----------
T ss_pred CcccchhhCCCHHHhccceeCCC--C-CHHHHHHHHHHHHHHHHcCCeEEehhhcCCceeEEEEEcCccccccccccccc
Confidence 88999999999999999999984 4 69999999999999999999999999999999999998653210000000000
Q ss_pred ---hhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhh
Q 024519 153 ---AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDH 229 (266)
Q Consensus 153 ---~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDH 229 (266)
........+.+||||+|+..|++...++|||||+||+++.|+||.+|+|+|+|++|++++++++||+||||||||||
T Consensus 80 ~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDH 159 (190)
T 3u04_A 80 DKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDH 159 (190)
T ss_dssp --CTTCBSSEEEEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHH
T ss_pred cccccccccCCCEEEECCEEEecCCCEeeccCCCCCcCCcceeeccchheEEEEECCCCCEEEEEEEChhhhhhhhHHHh
Confidence 00000124689999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeecCChhHHhhh
Q 024519 230 LDGTLYVDKMVPKTFRIV 247 (266)
Q Consensus 230 L~GiLfiDrl~~~~~~~~ 247 (266)
|+|+||+||+++..++.+
T Consensus 160 L~GiLfiDrl~~~~r~~~ 177 (190)
T 3u04_A 160 LNGTVFLKYLSKFKRDFA 177 (190)
T ss_dssp HTTCCGGGGSCHHHHHHH
T ss_pred cCCEeeeeecCHHHHHHH
Confidence 999999999998876544
No 4
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} SCOP: d.167.1.0
Probab=100.00 E-value=8.1e-58 Score=393.83 Aligned_cols=161 Identities=37% Similarity=0.588 Sum_probs=142.9
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~ 154 (266)
+++|+++|||+||++|++|+ +++++++++|++||++||++++||||||||||+++|+||++..... .+ .
T Consensus 2 i~~I~~~gdpvLr~~a~~V~--~~~~~~l~~li~dM~eTm~~~~GvGLAApQIGv~~ri~vid~~~~~-~~--------~ 70 (171)
T 3dld_A 2 IRDIIRMGDKRLLRVAPQVT--NLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASE-RY--------P 70 (171)
T ss_dssp CCCCCCTTCGGGGSCCCCCC--CTTCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCSSEEEEEESSCS-SS--------C
T ss_pred CcchhhCCChHHhccCeeCC--CCCCHHHHHHHHHHHHHHHHcCCEEEEccccCCceeEEEEEccccc-cc--------c
Confidence 56899999999999999997 3556999999999999999999999999999999999999864310 00 0
Q ss_pred cCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCcee
Q 024519 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234 (266)
Q Consensus 155 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiL 234 (266)
+....++.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+|
T Consensus 71 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiL 150 (171)
T 3dld_A 71 EAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRL 150 (171)
T ss_dssp SCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCC
T ss_pred cccccCCEEEECCEEEEcCCceeecCCCccccCCceEeeeCChhcEEEEECCCCCEEEEEEeChhhhhhhhHhHhcCCEe
Confidence 11123468999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCChhHHhh
Q 024519 235 YVDKMVPKTFRI 246 (266)
Q Consensus 235 fiDrl~~~~~~~ 246 (266)
|+||+++..+..
T Consensus 151 fiDrl~~~kr~~ 162 (171)
T 3dld_A 151 YPSRIENFDTFG 162 (171)
T ss_dssp GGGGCSCGGGCE
T ss_pred ehhcCCHHHhhh
Confidence 999999876553
No 5
>4dr9_A Peptide deformylase; hydrolase-hydrolase inhibitor complex; HET: BB2; 1.90A {Synechococcus elongatus}
Probab=100.00 E-value=1.6e-57 Score=398.24 Aligned_cols=166 Identities=34% Similarity=0.518 Sum_probs=147.7
Q ss_pred ccccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHH
Q 024519 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEI 151 (266)
Q Consensus 72 ~m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~ 151 (266)
++.+++|+++|||+||++|++|+. + ++++++|++||++||++++|+||||||||+++|+||++...+ +
T Consensus 15 ~~~i~~I~~~gdpvLr~~a~~V~~--~-d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~-------~-- 82 (192)
T 4dr9_A 15 AKPPLDLHYLGDRVLRQPAKRVSR--I-DDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELE-------D-- 82 (192)
T ss_dssp SSCSSCCCCTTCGGGGSCCCCCCC--C-CHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCSSEEEECCCC-----------
T ss_pred cccCceeEeCCCHHHhhCcccCCC--C-CHHHHHHHHHHHHHHHHcCCeEEechhcCCceeEEEEEcCcc-------c--
Confidence 346789999999999999999984 4 699999999999999999999999999999999999986431 0
Q ss_pred hhhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcC
Q 024519 152 KAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLD 231 (266)
Q Consensus 152 ~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~ 231 (266)
...++.+||||+|+..|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+
T Consensus 83 -----~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~ 157 (192)
T 4dr9_A 83 -----EQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLN 157 (192)
T ss_dssp --------CCEEEEEEEEEEEEEEEEEEEECCTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHT
T ss_pred -----cCcccEEEECCEEEECCCCEeeccCCCCCcCCeeeEecccceEEEEEECCCCCEEEEEEEChhhhhhhhHhHhhC
Confidence 012357999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCChhHHhhhhccCCcc
Q 024519 232 GTLYVDKMVPKTFRIVENLDLPL 254 (266)
Q Consensus 232 GiLfiDrl~~~~~~~~~~~~~~~ 254 (266)
|+||+||+++..+...+...-.|
T Consensus 158 GiLfiDrl~~~~~~~~~~~~~~~ 180 (192)
T 4dr9_A 158 GVLFVDRVENRLELNEALDKKGF 180 (192)
T ss_dssp TCCGGGGCCCHHHHHHHHHHTTC
T ss_pred CEeeEEEeCcHHHHHHHHHHhcc
Confidence 99999999999887666444333
No 6
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A*
Probab=100.00 E-value=1.6e-57 Score=386.81 Aligned_cols=152 Identities=34% Similarity=0.535 Sum_probs=139.3
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHh
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIK 152 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~ 152 (266)
|++++|+++|||+||++|++|+. + +++++++++||++||++++||||||||||+++|+||++....
T Consensus 1 M~i~~I~~~gdp~Lr~~a~~V~~--~-d~~l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~----------- 66 (156)
T 1ws0_A 1 MAVLEIIKHPNEVLETPCERVIN--F-DKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAVVDVDDD----------- 66 (156)
T ss_dssp CCCCCCCCSSCGGGGSCCBCCCC--C-CHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCTT-----------
T ss_pred CCccccccCCChHHhhccccCCC--C-CHHHHHHHHHHHHHHHHCCCEEEEhHHcCcceeEEEEEccCC-----------
Confidence 67889999999999999999984 4 689999999999999999999999999999999999986421
Q ss_pred hhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCc
Q 024519 153 AFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232 (266)
Q Consensus 153 ~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~G 232 (266)
. ...+||||+|++.|++. ..+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|
T Consensus 67 ---~---~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~G 139 (156)
T 1ws0_A 67 ---T---GKIELINPSILEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHG 139 (156)
T ss_dssp ---T---CEEEEEEEEEEEEEEEE-EEEECCTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred ---c---CcEEEECCEEEccCCCE-EeccCCcccCCeeeEeecccEEEEEEECCCCCEEEEEEeCceEEEeEehhHhhCC
Confidence 0 13799999999999887 6899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCChhHHh
Q 024519 233 TLYVDKMVPKTFR 245 (266)
Q Consensus 233 iLfiDrl~~~~~~ 245 (266)
+||+||+++..++
T Consensus 140 iLfiDrl~~~~r~ 152 (156)
T 1ws0_A 140 VLFTSKVTRYYEE 152 (156)
T ss_dssp CCGGGTEEEECC-
T ss_pred EeeeeEcCHHHHH
Confidence 9999999875443
No 7
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=100.00 E-value=7e-57 Score=390.68 Aligned_cols=158 Identities=34% Similarity=0.620 Sum_probs=144.2
Q ss_pred CccccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHH
Q 024519 71 KKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEE 150 (266)
Q Consensus 71 ~~m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~ 150 (266)
..|++++|+++|||+||++|++|+. + ++++++|++||++||++++||||||||||+++|+||++...+
T Consensus 11 ~~~~~~~I~~~~dpvLr~~a~~V~~--~-d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~--------- 78 (180)
T 1n5n_A 11 HHMAILNILEFPDPRLRTIAKPVEV--V-DDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSED--------- 78 (180)
T ss_dssp --CCCCCCCCTTCGGGGCBCBCCSC--C-CHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECSTT---------
T ss_pred ccccccceeeCCChHHhcccccCCC--C-CHHHHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEEccCC---------
Confidence 3599999999999999999999984 4 689999999999999999999999999999999999986421
Q ss_pred HhhhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhc
Q 024519 151 IKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHL 230 (266)
Q Consensus 151 ~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL 230 (266)
...+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||
T Consensus 79 -------~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL 151 (180)
T 1n5n_A 79 -------KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHL 151 (180)
T ss_dssp -------SCCEEEEEEEEEEESCSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHH
T ss_pred -------CCccEEEECCEEecCCCCEEecccCCcCcCCcceEEeccCEEEEEEECCCCCEEEEEEcCCeEEeeeehhHhh
Confidence 0135899999999999987778999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCChhHHhhh
Q 024519 231 DGTLYVDKMVPKTFRIV 247 (266)
Q Consensus 231 ~GiLfiDrl~~~~~~~~ 247 (266)
+|+||+||+++..++.+
T Consensus 152 ~GiLfiDrl~~~~r~~~ 168 (180)
T 1n5n_A 152 NGKLFVDYLSTLKRDRI 168 (180)
T ss_dssp BTCCGGGGSCHHHHHHH
T ss_pred CCEeEeeecCHHHHHHH
Confidence 99999999999766544
No 8
>3uwb_A RIIA-RIIB membrane-associated protein; actinonin, probable peptide deformylase hydrolase-antibiotic complex; HET: BB2; 1.70A {Synechococcus phage s-ssm7} PDB: 3uwa_A*
Probab=100.00 E-value=2.9e-57 Score=384.58 Aligned_cols=152 Identities=38% Similarity=0.575 Sum_probs=137.1
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~ 154 (266)
+++|+++|||+||++|++|+. + ++++++|++||++||++++|+||||||||+++|+||++.... +
T Consensus 2 ~~~I~~~gdpvLr~~a~~V~~--~-d~~l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vi~~~~~-------~----- 66 (154)
T 3uwb_A 2 SLKIKTIGDRCLRQKSEEVEF--D-KKEMSELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTE-------E----- 66 (154)
T ss_dssp CCCCCCTTCGGGTSCCBCCCC--C-HHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCBT-------T-----
T ss_pred CccEEECCCHHHhccceeCCc--C-CHHHHHHHHHHHHHHHHCCCcEEEccccCccEEEEEEEcccc-------c-----
Confidence 357999999999999999984 4 589999999999999999999999999999999999986431 0
Q ss_pred cCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCcee
Q 024519 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234 (266)
Q Consensus 155 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiL 234 (266)
... .+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+|
T Consensus 67 -~~~-~~~v~INP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiL 144 (154)
T 3uwb_A 67 -HGK-YAHLMVNPKITWKSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGIL 144 (154)
T ss_dssp -TBS-CEEEEEEEEEEEECSCEEEEEEEETTEEEEEEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred -cCc-ccEEEECCEEEECCCcEEecccCccCcCCcceeccCcceeEEEEECCCCCEEEEEEEChhhhhhhhHHHhhCCEe
Confidence 011 468999999999999988799999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCChhH
Q 024519 235 YVDKMVPKT 243 (266)
Q Consensus 235 fiDrl~~~~ 243 (266)
|+||+++++
T Consensus 145 fiDrl~~~e 153 (154)
T 3uwb_A 145 FVDYFNDKE 153 (154)
T ss_dssp GGGGCC---
T ss_pred eeEEeCCcC
Confidence 999999763
No 9
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB: 1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Probab=100.00 E-value=2.1e-57 Score=393.08 Aligned_cols=162 Identities=38% Similarity=0.637 Sum_probs=142.8
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~ 154 (266)
+++|+++|||+||++|++|+..++.++++++|++||++||++++||||||||||+++|+||++..... .+ .
T Consensus 2 i~~I~~~gdpvLr~~a~~V~~~~~~~~~l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~-~~--------~ 72 (177)
T 1y6h_A 2 VRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNE-RY--------P 72 (177)
T ss_dssp CCCCCCTTCGGGGSCCBCCCGGGTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCT-TS--------T
T ss_pred CcCceeCCChHHhcCcccccccCCCCHHHHHHHHHHHHHHHHCCCeEEEehhcCCceeEEEEEccCcc-cc--------c
Confidence 56899999999999999998533557999999999999999999999999999999999999864210 00 0
Q ss_pred cCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCcee
Q 024519 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234 (266)
Q Consensus 155 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiL 234 (266)
+....++.+||||+|+..|+++...+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+|
T Consensus 73 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiL 152 (177)
T 1y6h_A 73 GTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGIL 152 (177)
T ss_dssp TSCCCCCEEEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCC
T ss_pred cccccCcEEEECCEEEEcCCCEEecccCCcccCCeeeeeeccceEEEEEECCCCCEEEEEEeCceeEehhhhHHHhCCEe
Confidence 11223468999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCChhHHh
Q 024519 235 YVDKMVPKTFR 245 (266)
Q Consensus 235 fiDrl~~~~~~ 245 (266)
|+||+++....
T Consensus 153 fiDrl~~~~~~ 163 (177)
T 1y6h_A 153 YVDRLKDTKLF 163 (177)
T ss_dssp GGGGBSCTTSE
T ss_pred eeeecChhhhH
Confidence 99999986544
No 10
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=100.00 E-value=1.8e-56 Score=384.49 Aligned_cols=153 Identities=37% Similarity=0.624 Sum_probs=140.1
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~ 154 (266)
+++|+++|||+||++|++|+. + ++++++|++||++||++++||||||||||+++|+||++...+
T Consensus 2 i~~I~~~gdp~Lr~~a~~V~~--~-d~~l~~li~dM~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~------------- 65 (168)
T 1xeo_A 2 VLQVLHIPDERLRKVAKPVEE--V-NAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN------------- 65 (168)
T ss_dssp CCCCCCTTCGGGGCCCBCCSC--C-CHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTT-------------
T ss_pred CcceeeCCChHHhhccccCCC--C-CHHHHHHHHHHHHHHHHCCCEEEEhHhCCcceEEEEEEccCC-------------
Confidence 568999999999999999984 4 699999999999999999999999999999999999986421
Q ss_pred cCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCcee
Q 024519 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234 (266)
Q Consensus 155 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiL 234 (266)
...+.+||||+|+..|++.. .+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+|
T Consensus 66 ---~~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiL 141 (168)
T 1xeo_A 66 ---RDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKL 141 (168)
T ss_dssp ---SCCCEEEEEEEEEEEECCBC-CEECCTTSTTCCEECCBCSEEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred ---cCccEEEECCEEeccCCCEE-EecCccCcCCEEEEeEcccEEEEEEECCCCCEEEEEEeCCeEEeeeehhHHhCCEE
Confidence 01257999999999999876 89999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCChhHHhhh
Q 024519 235 YVDKMVPKTFRIV 247 (266)
Q Consensus 235 fiDrl~~~~~~~~ 247 (266)
|+||+++..++.+
T Consensus 142 fiDrl~~~~~~~~ 154 (168)
T 1xeo_A 142 FMDYLSPLKQQRI 154 (168)
T ss_dssp GGGGSCHHHHHHH
T ss_pred EeeeCCHHHHHHH
Confidence 9999999765544
No 11
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=100.00 E-value=1.1e-56 Score=386.68 Aligned_cols=155 Identities=35% Similarity=0.649 Sum_probs=140.7
Q ss_pred ccccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-CCceeEecccCCccceEEEEecCchhhccchhHH
Q 024519 72 KAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRS-APGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEE 150 (266)
Q Consensus 72 ~m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~-~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~ 150 (266)
.|++++|+++|||+||++|++|+. + ++ +++|++||++||++ ++||||||||||+++|+||++...+
T Consensus 3 ~M~i~~I~~~gdp~Lr~~a~pV~~--~-d~-l~~li~dM~eTm~~~~~GvGLAApQIGv~~ri~vid~~~~--------- 69 (171)
T 3qu1_A 3 AMAVLEILTAPDPRLRVQSKQVTD--V-AS-VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSDN--------- 69 (171)
T ss_dssp -CCCCCCCCSSCGGGGSCCBCCSC--G-GG-GHHHHHHHHHHHHHSSSCCEEEGGGGTCCBCEEEECCCSS---------
T ss_pred CCcccceeeCCChHHhccceeCCC--c-hH-HHHHHHHHHHHHHhcCCcEEEEccccCcceEEEEEEccCC---------
Confidence 389999999999999999999984 4 46 99999999999999 9999999999999999999986421
Q ss_pred HhhhcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhc
Q 024519 151 IKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHL 230 (266)
Q Consensus 151 ~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL 230 (266)
..++.+||||+|+. |++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||
T Consensus 70 -------~~~~~vlINP~I~~-~~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL 141 (171)
T 3qu1_A 70 -------RDQPLVLINPKVVS-GSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHL 141 (171)
T ss_dssp -------SCCCEEEEEEEEEE-EEEEEEEEECCTTSTTCCEEEEEEEEEEEEEECTTSCEEEEEECSTHHHHHHHHHHHH
T ss_pred -------CCccEEEECCEEEe-CCCeEEcccCccCcCCccccccCchhhEEEEECCCCCEEEEEEECHHHHHHhHHHHhh
Confidence 01357999999997 7777789999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCChhHHhhh
Q 024519 231 DGTLYVDKMVPKTFRIV 247 (266)
Q Consensus 231 ~GiLfiDrl~~~~~~~~ 247 (266)
+|+||+||+++..+..+
T Consensus 142 ~GiLfiDrl~~~~r~~~ 158 (171)
T 3qu1_A 142 SGNLFIDYLSPLKQQMA 158 (171)
T ss_dssp TTCCGGGGSCHHHHHHH
T ss_pred CCEehhhhCCHHHHHHH
Confidence 99999999999876544
No 12
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3e-56 Score=391.64 Aligned_cols=162 Identities=36% Similarity=0.527 Sum_probs=141.0
Q ss_pred cccccccccCcccccccccccCCC---CCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhH
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPG---EIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKE 149 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~---~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e 149 (266)
|++++|+++|||+||++|++|+.. .+ ++++++|++||++||++++||||||||||+++|||||+...+.
T Consensus 1 M~i~~I~~~gdpvLr~~a~~V~~~~~~~~-~~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~------- 72 (197)
T 3e3u_A 1 MAVVPIRIVGDPVLHTATTPVTVAADGSL-PADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADR------- 72 (197)
T ss_dssp -CCCCEECTTCGGGSSCCBCCCCCTTSCC-CTTHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTB-------
T ss_pred CCcceeecCCCHHHhcCceeCcccccCCC-CHHHHHHHHHHHHHHHHCCCeEEEccccCcceEEEEEEcCccc-------
Confidence 788999999999999999999821 23 5799999999999999999999999999999999999864310
Q ss_pred HHhhhcCCCCCeEEEEcCeeEecCCce-----ecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHh
Q 024519 150 EIKAFDRRPFDLLMILNPKLKKKSDRT-----ALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQ 224 (266)
Q Consensus 150 ~~~~~~~~~~~~~vlINP~I~~~s~~~-----~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~Q 224 (266)
......+.+||||+|+..++.. ...+|||||+||+++.|.||.+|+|+|+|++|++++++++||+|||||
T Consensus 73 -----~~~~~~~~vlINP~I~~~~~~~~~~e~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQ 147 (197)
T 3e3u_A 73 -----AMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQ 147 (197)
T ss_dssp -----CTTSCSEEEEEEEEEEESCCCCSCCCTTTCEEECTTSTTCEEECCCCSEEEEEEECTTSCEEEEEEEHHHHHHHH
T ss_pred -----ccccccceEEEcCEEEccCcceeccccccccCCCCCcCCCceeccCCCeEEEEEECCCCCEEEEEEEChhhhhhh
Confidence 0011246899999999754432 368999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCceeeeecCChhHHhhh
Q 024519 225 HECDHLDGTLYVDKMVPKTFRIV 247 (266)
Q Consensus 225 HEiDHL~GiLfiDrl~~~~~~~~ 247 (266)
||||||+|+||+||+++..++.+
T Consensus 148 HEiDHL~GiLfiDrl~~~~r~~~ 170 (197)
T 3e3u_A 148 HETGHLDGFLYLDRLIGRYARNA 170 (197)
T ss_dssp HHHHHHTTCCGGGGCCHHHHHHH
T ss_pred hhhHhhCCEeeheecCHHHHHHH
Confidence 99999999999999999876644
No 13
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=100.00 E-value=2.7e-56 Score=389.34 Aligned_cols=158 Identities=32% Similarity=0.508 Sum_probs=137.5
Q ss_pred ccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhh
Q 024519 74 KLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKA 153 (266)
Q Consensus 74 ~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~ 153 (266)
++++|+++|||+||++|++|+. + ++++++|++||++||++++||||||||||+++|+|||+.... +.
T Consensus 7 ~i~~I~~~gdpvLr~~a~~V~~--~-d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~-------~~--- 73 (188)
T 1rl4_A 7 DEIKIVKYPDPILRRRSEEVTN--F-DDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYE-------KR--- 73 (188)
T ss_dssp ---CCCCTTCGGGGSCCBCCCC--C-SHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEC----------------
T ss_pred ccCCeeeCCChHHhcccccCCC--C-CHHHHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEEcccc-------cc---
Confidence 5678999999999999999984 4 689999999999999999999999999999999999985310 00
Q ss_pred hcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCce
Q 024519 154 FDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGT 233 (266)
Q Consensus 154 ~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~Gi 233 (266)
...++.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+
T Consensus 74 ---~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~Gi 150 (188)
T 1rl4_A 74 ---KEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGT 150 (188)
T ss_dssp --------CEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTC
T ss_pred ---CcccceEEECCEEEecCCcEEeccccccccCCccEEEecccEEEEEEECCCCCEEEEEEeCCeEEEeEehhHhhCCE
Confidence 00124799999999999988778999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCChhHHhhh
Q 024519 234 LYVDKMVPKTFRIV 247 (266)
Q Consensus 234 LfiDrl~~~~~~~~ 247 (266)
||+||+++..++.+
T Consensus 151 LfiDrl~~~~r~~~ 164 (188)
T 1rl4_A 151 LFIDKMTQVDKKKV 164 (188)
T ss_dssp CGGGGBCHHHHHHH
T ss_pred EEEeecCHHHHHHH
Confidence 99999999765544
No 14
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=100.00 E-value=3.6e-56 Score=384.93 Aligned_cols=152 Identities=32% Similarity=0.558 Sum_probs=137.5
Q ss_pred ccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhh
Q 024519 74 KLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKA 153 (266)
Q Consensus 74 ~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~ 153 (266)
-+++|+.+|||+||++|++|+. + ++++++|++||++||++++||||||||||+++|+||++...
T Consensus 12 ~~~~I~~~gdpvLr~~a~~V~~--~-d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~vid~~~------------- 75 (176)
T 1lme_A 12 HMYRIRVFGDPVLRKRAKPVTK--F-DENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN------------- 75 (176)
T ss_dssp SSCCCCCTTCGGGTSCCBCCCB--C-SHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSS-------------
T ss_pred ccccceECCCHHHhcCcccCCc--C-CHHHHHHHHHHHHHHHHCCCeEEEehhcCcceEEEEEEcCC-------------
Confidence 4678999999999999999984 4 68999999999999999999999999999999999998532
Q ss_pred hcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCce
Q 024519 154 FDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGT 233 (266)
Q Consensus 154 ~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~Gi 233 (266)
.+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+
T Consensus 76 ------~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~Gi 149 (176)
T 1lme_A 76 ------GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGV 149 (176)
T ss_dssp ------CCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTC
T ss_pred ------ceEEEECCEEEccCCcEEeccCCccCcCCcceEEecCCEEEEEEECCCCCEEEEEEeCCeEEEeeehhHhhCCE
Confidence 14799999999999988778999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCChhHHhhh
Q 024519 234 LYVDKMVPKTFRIV 247 (266)
Q Consensus 234 LfiDrl~~~~~~~~ 247 (266)
||+||+++..++.+
T Consensus 150 LfiDrl~~~~r~~~ 163 (176)
T 1lme_A 150 LIIDRISPAKRLLL 163 (176)
T ss_dssp CGGGGBCC------
T ss_pred eeeeeCCHHHHHHH
Confidence 99999999766554
No 15
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=100.00 E-value=9.1e-56 Score=387.21 Aligned_cols=155 Identities=35% Similarity=0.621 Sum_probs=141.1
Q ss_pred cccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhhcC
Q 024519 77 EIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDR 156 (266)
Q Consensus 77 ~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~~~ 156 (266)
+|+++|||+||++|++|+. + ++++++|++||++||++++||||||||||+++|+||++.... .
T Consensus 2 ~I~~~gdpvLr~~a~~V~~--~-d~~l~~Li~dM~eTM~~a~GvGLAApQIGv~~Ri~Vid~~~~--------------~ 64 (193)
T 3pn3_A 2 EIVEYPDPILRAKNKRIDI--F-DENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGE--------------P 64 (193)
T ss_dssp CCCCTTCGGGTSCCBCCCC--C-SHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECTTCS--------------T
T ss_pred cEEECCCHHHHhcCccCCC--C-CHHHHHHHHHHHHHHHHCCCeEEEccccCcceEEEEEECCCC--------------c
Confidence 6999999999999999984 4 699999999999999999999999999999999999986421 0
Q ss_pred CCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCceeee
Q 024519 157 RPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYV 236 (266)
Q Consensus 157 ~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiLfi 236 (266)
....+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+||+
T Consensus 65 ~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfi 144 (193)
T 3pn3_A 65 GEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFF 144 (193)
T ss_dssp TSSCCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGG
T ss_pred CCcccEEEECCEEEecCCcEEEeecccccCCCCCCcCcCCCEEEEEEEcCCCCEEEEEEEChhhhhhhHHHHHhCCEeee
Confidence 11235799999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChhHHhhhh
Q 024519 237 DKMVPKTFRIVE 248 (266)
Q Consensus 237 Drl~~~~~~~~~ 248 (266)
||+++..++.+.
T Consensus 145 Drl~~~kr~~~~ 156 (193)
T 3pn3_A 145 DRMTDQVLDSIR 156 (193)
T ss_dssp GGSCHHHHHTTH
T ss_pred eecCHHHHHHHH
Confidence 999998766443
No 16
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=100.00 E-value=1e-55 Score=385.64 Aligned_cols=152 Identities=38% Similarity=0.633 Sum_probs=139.5
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~ 154 (266)
+++|+++|||+||++|++|+. + ++++++|++||++||++++||||||||||+++|+|||+....
T Consensus 2 i~~I~~~gdpvLr~~a~pV~~--~-d~~l~~Li~dM~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~------------- 65 (188)
T 2w3t_A 2 VLQVLHIPDERLRKVAKPVEE--V-NAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN------------- 65 (188)
T ss_dssp CCCCCCTTCGGGGCCCBCCSC--C-CHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTT-------------
T ss_pred CccceeCCChHHhhcCccCCC--C-CHHHHHHHHHHHHHHHhCCCEEEEhHHcCcceEEEEEEccCC-------------
Confidence 568999999999999999984 4 689999999999999999999999999999999999986421
Q ss_pred cCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCcee
Q 024519 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234 (266)
Q Consensus 155 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiL 234 (266)
. ..+.+||||+|+..|++.. .+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+|
T Consensus 66 -~--~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiL 141 (188)
T 2w3t_A 66 -R--DERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKL 141 (188)
T ss_dssp -S--CCCEEEEEEEEEEEESCEE-EEECCTTSTTCCEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCC
T ss_pred -c--CceEEEECCEEEecCCCEE-eecCccCcCCEEEEEEcccEEEEEEECCCCCEEEEEEECCeEEeeeehHHHhCCEe
Confidence 0 1257999999999999877 89999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCChhHHhh
Q 024519 235 YVDKMVPKTFRI 246 (266)
Q Consensus 235 fiDrl~~~~~~~ 246 (266)
|+||+++..++.
T Consensus 142 fiDrl~~~~r~~ 153 (188)
T 2w3t_A 142 FMDYLSPLKQQR 153 (188)
T ss_dssp GGGGSCHHHHHH
T ss_pred EeeecCHHHHHH
Confidence 999999876543
No 17
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Probab=100.00 E-value=8.1e-56 Score=384.41 Aligned_cols=158 Identities=32% Similarity=0.536 Sum_probs=139.9
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEEecCchhhccchhHHHhhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAF 154 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv~~~~~~~~~~~~e~~~~~ 154 (266)
+++|+++|||+||++|++|+. + ++++++|++||++||++++||||||||||+++|+|||+..... +
T Consensus 2 i~~I~~~gdpvLr~~a~~V~~--~-d~~l~~Li~dM~eTm~~~~GvGLAApQIGv~~Ri~Vid~~~~~----~------- 67 (181)
T 2ew5_A 2 LLEIIHYPSKILRTISKEVVS--F-DAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQED----G------- 67 (181)
T ss_dssp CCCCCCTTCGGGGCCCBCCCC--C-SHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCCTT----S-------
T ss_pred CcchhcCCChHHhccccccCc--C-CHHHHHHHHHHHHHHHHCCCeEEEhhhcCcceEEEEEECCCcc----c-------
Confidence 568999999999999999984 4 6899999999999999999999999999999999999864310 0
Q ss_pred cCCCCCeEEEEcCeeEecCCceecCcccCCccCCCceeeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCcee
Q 024519 155 DRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTL 234 (266)
Q Consensus 155 ~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~GiL 234 (266)
+....++.+||||+|+ .|+++...+|||||+||+++.|+||.+|+|+|+|++|++++++++||+|||||||||||+|+|
T Consensus 68 ~~~~~~~~vlINP~I~-~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiL 146 (181)
T 2ew5_A 68 VQHKEDCLEIINPKFI-ETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVL 146 (181)
T ss_dssp CCCGGGCEEEEEEEEE-EEECCEEEEECCTTSTTCCEEEEECSEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCC
T ss_pred ccccCccEEEECCEEE-EcCCEEEcccCCcccCCCcceeccccEEEEEEECCCCCEEEEEEeCceEEeeeehhHHhCCEe
Confidence 0001122799999999 888866789999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCChhHHhhh
Q 024519 235 YVDKMVPKTFRIV 247 (266)
Q Consensus 235 fiDrl~~~~~~~~ 247 (266)
|+||+++..++.+
T Consensus 147 fiDrl~~~~r~~~ 159 (181)
T 2ew5_A 147 FVDKLSILKRKKF 159 (181)
T ss_dssp GGGGCCHHHHHHH
T ss_pred EeeeCCHHHHHHH
Confidence 9999999765544
No 18
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=100.00 E-value=3.4e-55 Score=383.57 Aligned_cols=164 Identities=34% Similarity=0.515 Sum_probs=137.8
Q ss_pred cccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhCCceeEecccCCccceEEEE-ecCchhhccchhHHHhh
Q 024519 75 LPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVL-EDTKEYISYQSKEEIKA 153 (266)
Q Consensus 75 ~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~~GvGLAAPQIGv~~rifVv-~~~~~~~~~~~~e~~~~ 153 (266)
+++|+++|||+||++|++|+. + +++++|++||++||++++||||||||||+++||||| +..... +.. +. ..
T Consensus 2 i~~I~~~gdpvLr~~a~~V~~--~--~~l~~li~dM~eTM~~~~GvGLAApQIGv~~ri~Vi~d~~~~~-~~~--~~-~~ 73 (192)
T 1v3y_A 2 VYPIRLYGDPVLRRKARPVED--F--SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEP-EGE--EE-RP 73 (192)
T ss_dssp CCCCCCTTCGGGGSCCBCCCC--C--TTHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEC----------------
T ss_pred ccCceeCCChHHhccCccCCC--c--HHHHHHHHHHHHHHHhCCCcEEEecccCcceEEEEEEccCccc-ccc--cc-cc
Confidence 468999999999999999984 3 479999999999999999999999999999999999 643210 000 00 00
Q ss_pred hcCCCCCeEEEEcCeeEecCCceecCcccCCccCCCce-eeccccceEEEEECCCCCeEEEEEcchhhhHHhhhhhhcCc
Q 024519 154 FDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRA-VVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDG 232 (266)
Q Consensus 154 ~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~-~V~R~~~I~V~y~D~~G~~~~~~~~G~~AR~~QHEiDHL~G 232 (266)
......++.+||||+|+..|++.. .+|||||+||+++ .|+||.+|+|+|+|++|++++++++||+|||||||||||+|
T Consensus 74 ~~~~~~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~G 152 (192)
T 1v3y_A 74 LRELVRRVYVVANPVITYREGLVE-GTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDG 152 (192)
T ss_dssp CTTTCSCEEEEEEEEEEEEECCEE-EEECCTTSTTCCEEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred ccccccCceEEECCEEEEcCCcEE-EeCCCCCcCCEecccccccCEEEEEEECCCCCEEEEEEeccEEEEeehhhHhhCC
Confidence 001123468999999999999876 8999999999999 99999999999999999999999999999999999999999
Q ss_pred eeeeecCChhHHhhh
Q 024519 233 TLYVDKMVPKTFRIV 247 (266)
Q Consensus 233 iLfiDrl~~~~~~~~ 247 (266)
+||+||+++..+..+
T Consensus 153 iLfiDrl~~~~r~~~ 167 (192)
T 1v3y_A 153 ILFFERLPKPKREAF 167 (192)
T ss_dssp CCGGGGSCHHHHHHH
T ss_pred EeEEEecCHhHhHHH
Confidence 999999998765543
No 19
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus} PDB: 1lqy_A*
Probab=100.00 E-value=7e-55 Score=379.63 Aligned_cols=156 Identities=32% Similarity=0.544 Sum_probs=138.9
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHh------------CCceeEecccCCccceEEEEecCc
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRS------------APGVGLAAPQIGVPLRIIVLEDTK 140 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~------------~~GvGLAAPQIGv~~rifVv~~~~ 140 (266)
|++++|+++|||+||++|++|+. . .++++++|++||++||++ ++||||||||||+++|+||++...
T Consensus 3 ~~~~~I~~~gdpvLr~~a~~V~~-~-~~~~l~~li~dM~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~ 80 (185)
T 2okl_A 3 LTMKDVIREGDPILRNVAEEVSL-P-ASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTD 80 (185)
T ss_dssp CCGGGCCCTTCGGGGSCCBCCCS-S-CCHHHHHHHHHHHHHHHHHTSHHHHHHTTCCCCSEEEGGGGTCCBSEEEEEEEC
T ss_pred cccCcceeCCChHHhcCceeCCC-C-CCHHHHHHHHHHHHHHHhhhhcchhccccCCCeEEEEhhhcCcCeeEEEEEccC
Confidence 78899999999999999999983 1 379999999999999964 689999999999999999998632
Q ss_pred hhhccchhHHHhhhcCCCCCeEEEEcCeeEecCCcee--cCcccCCccCC-CceeeccccceEEEEECCCCCeEEEEEcc
Q 024519 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA--LFFEGCLSVNG-YRAVVERYLDIEVTGLDRDGQPIKVDATG 217 (266)
Q Consensus 141 ~~~~~~~~e~~~~~~~~~~~~~vlINP~I~~~s~~~~--~~~EGCLSvPg-~~~~V~R~~~I~V~y~D~~G~~~~~~~~G 217 (266)
+ + ....+.+||||+|++.|++.. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++|
T Consensus 81 ~-------~-------~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G 146 (185)
T 2okl_A 81 A-------D-------GTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKG 146 (185)
T ss_dssp T-------T-------CCEEEEEEEEEEEEEECSSEEECTTCCCCTTCCSCCCSCCCEESEEEEEEEETTSCEEEEEEEH
T ss_pred c-------c-------CCccceEEECCEEEccCCcCccCCCCccCccccCeeeEEeecccEEEEEEECCCCCEEEEEEeC
Confidence 1 0 011257999999999999875 46999999997 99999999999999999999999999999
Q ss_pred hhhhHHhhhhhhcCceeeeecCChhHH
Q 024519 218 WQARILQHECDHLDGTLYVDKMVPKTF 244 (266)
Q Consensus 218 ~~AR~~QHEiDHL~GiLfiDrl~~~~~ 244 (266)
|+|||||||||||+|+||+||+++...
T Consensus 147 ~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 173 (185)
T 2okl_A 147 LPAIVFQHEIDHLNGVMFYDHINKENP 173 (185)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGSCSSCT
T ss_pred ceEEehhhhHHHhCCEeeeeecCccCC
Confidence 999999999999999999999998754
No 20
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=100.00 E-value=1.5e-54 Score=378.35 Aligned_cols=159 Identities=30% Similarity=0.464 Sum_probs=138.5
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHh------------CCceeEecccCCccceEEEEecCc
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRS------------APGVGLAAPQIGVPLRIIVLEDTK 140 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~------------~~GvGLAAPQIGv~~rifVv~~~~ 140 (266)
|++++|+++|||+||++|++|+. .+ ++++++|++||++||++ ++||||||||||+++|+||++...
T Consensus 2 ~~~~~I~~~gdpvLr~~a~~V~~-~~-~~~l~~li~dM~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~ 79 (188)
T 2os0_A 2 ITMKDIIREGNPTLRAVAEEVPV-PI-TEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRIIAVHVPS 79 (188)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCS-SC-CHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC
T ss_pred CccCcceeCCChHHhcCceeCCC-CC-CHHHHHHHHHHHHHHHhhhhcchhcccccCCcEEEEhhhcCcceeEEEEECCC
Confidence 67889999999999999999983 13 79999999999999964 689999999999999999998642
Q ss_pred -hhhccchhHHHhhhcCCCCCeEEEEcCeeEecCCcee--cCcccCCccCC-CceeeccccceEEEEECCCCCeEEEEEc
Q 024519 141 -EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA--LFFEGCLSVNG-YRAVVERYLDIEVTGLDRDGQPIKVDAT 216 (266)
Q Consensus 141 -~~~~~~~~e~~~~~~~~~~~~~vlINP~I~~~s~~~~--~~~EGCLSvPg-~~~~V~R~~~I~V~y~D~~G~~~~~~~~ 216 (266)
.. ++ .....+.+||||+|+..|++.. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++
T Consensus 80 ~~~-----~~------~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~ 148 (188)
T 2os0_A 80 NDP-----EN------ETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVPGYVVRHNKITVSYFDMAGEKHKVRLK 148 (188)
T ss_dssp --------------------EEEEEEEEEEEEECSCEEEETTCCCCTTCCSCCCSCCCEESEEEEEEECTTSCEEEEEEE
T ss_pred ccc-----cc------ccccccEEEEcCEEEecCCcEecCCCCcCcceECCCeEEEeecccEEEEEEECCCCCEEEEEEe
Confidence 10 00 0011257999999999999865 56999999997 9999999999999999999999999999
Q ss_pred chhhhHHhhhhhhcCceeeeecCChhHH
Q 024519 217 GWQARILQHECDHLDGTLYVDKMVPKTF 244 (266)
Q Consensus 217 G~~AR~~QHEiDHL~GiLfiDrl~~~~~ 244 (266)
||+|||||||||||+|+||+||+++...
T Consensus 149 G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 176 (188)
T 2os0_A 149 NYEAIVVQHEIDHINGIMFYDHINKENP 176 (188)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGGSCSSST
T ss_pred CceeEhhhhHHHHhCCEeeeEEcCCcCC
Confidence 9999999999999999999999998754
No 21
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR hydrolase inhibitor complex; HET: 4LI; 1.55A {Streptococcus pneumoniae} SCOP: d.167.1.1 PDB: 3str_P* 3sw8_P* 4eox_P* 1lm6_A 2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Probab=100.00 E-value=1.5e-54 Score=382.38 Aligned_cols=165 Identities=29% Similarity=0.419 Sum_probs=139.4
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHhC------------CceeEecccCCccceEEEEecCc
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSA------------PGVGLAAPQIGVPLRIIVLEDTK 140 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~~------------~GvGLAAPQIGv~~rifVv~~~~ 140 (266)
|++++|+++|||+||++|++|+.. .++++++|++||++||+++ +||||||||||+++|+|||+...
T Consensus 14 ~~~~~Iv~~gdpvLr~~a~~V~~~--~~~~l~~Li~dM~eTM~~~~d~~~~~~~~~~~GVGLAApQIGv~~Ri~Vid~~~ 91 (203)
T 3svj_P 14 IDMNDIIREGNPTLRTVAEEVTFP--LSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPN 91 (203)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSS--CCHHHHHHHHHHHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEEC
T ss_pred ceecCeeeCCCHHHhhCceeCCCC--CCHHHHHHHHHHHHHHHHhccchhhhccccCCcEEEeccccCCceeEEEEEcCc
Confidence 578899999999999999999731 3799999999999999973 69999999999999999998643
Q ss_pred hhhccchhHHHhhhcCCCCCeEEEEcCeeEecCCcee--cCcccCCccC-CCceeeccccceEEEEECCCCCeEEEEEcc
Q 024519 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA--LFFEGCLSVN-GYRAVVERYLDIEVTGLDRDGQPIKVDATG 217 (266)
Q Consensus 141 ~~~~~~~~e~~~~~~~~~~~~~vlINP~I~~~s~~~~--~~~EGCLSvP-g~~~~V~R~~~I~V~y~D~~G~~~~~~~~G 217 (266)
.. ++....+..+..+.+||||+|+..|++.. ..+|||||+| |+++.|+||.+|+|+|+|++|++++++++|
T Consensus 92 ~~------~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G 165 (203)
T 3svj_P 92 IV------EEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKG 165 (203)
T ss_dssp C---------------CEEEEEEEEEEEEEEECSSEEEETTCCCCTTCCSCCCSCBCEESSEEEEEECTTSCEEEEEECH
T ss_pred cc------cccccccccCcccEEEECCEEEecCCceeccccccCccCcCCCcEEEecCcceeEEEEECCCCCEEEEEEEC
Confidence 10 00000011112358999999999998764 5789999999 699999999999999999999999999999
Q ss_pred hhhhHHhhhhhhcCceeeeecCChhHHh
Q 024519 218 WQARILQHECDHLDGTLYVDKMVPKTFR 245 (266)
Q Consensus 218 ~~AR~~QHEiDHL~GiLfiDrl~~~~~~ 245 (266)
|+|||||||||||+|+||+||++++..-
T Consensus 166 ~~Ar~iQHEiDHL~GiLfiDrl~~~~~~ 193 (203)
T 3svj_P 166 YNSIVVQHEIDHINGIMFYDRINEKDPF 193 (203)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGBCSSCTT
T ss_pred hhhhhhhhHhHhcCCEeeeeEcCCcCcc
Confidence 9999999999999999999999987653
No 22
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A*
Probab=100.00 E-value=8.9e-54 Score=375.16 Aligned_cols=156 Identities=29% Similarity=0.471 Sum_probs=138.4
Q ss_pred ccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHh------------CCceeEecccCCccceEEEEecCch
Q 024519 74 KLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRS------------APGVGLAAPQIGVPLRIIVLEDTKE 141 (266)
Q Consensus 74 ~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~------------~~GvGLAAPQIGv~~rifVv~~~~~ 141 (266)
++++|+++|||+||++|++|+. . .++++++|++||++||++ ++||||||||||+++|+|||+....
T Consensus 14 ~~~~I~~~gdpvLr~~a~~V~~-~-~~~~l~~li~dM~eTM~~~~~~~~~~~y~~~~GVGLAApQIGv~~Ri~vid~~~~ 91 (194)
T 1lm4_A 14 TMKDIIRDGHPTLRQKAAELEL-P-LTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDD 91 (194)
T ss_dssp CGGGSCCTTCGGGGSCCBCCCS-S-CCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCC
T ss_pred cccCeEeCCCHHHhcEeeeCCC-C-CCHHHHHHHHHHHHHHHhhhhcchhhhcccCCceEEEecccCcceeEEEEEcCCc
Confidence 6789999999999999999983 1 379999999999999963 6899999999999999999986421
Q ss_pred hhccchhHHHhhhcCCCCCeEEEEcCeeEecCCcee--cCcccCCccCC-CceeeccccceEEEEECCCCCeEEEEEcch
Q 024519 142 YISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA--LFFEGCLSVNG-YRAVVERYLDIEVTGLDRDGQPIKVDATGW 218 (266)
Q Consensus 142 ~~~~~~~e~~~~~~~~~~~~~vlINP~I~~~s~~~~--~~~EGCLSvPg-~~~~V~R~~~I~V~y~D~~G~~~~~~~~G~ 218 (266)
.+ ....+.+||||+|++.|++.. ..+|||||+|| +++.|+||.+|+|+|+|++|++++++++||
T Consensus 92 -----~~--------~~~~~~vlINP~Ii~~s~e~~~~~~~EGCLSvPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~ 158 (194)
T 1lm4_A 92 -----GS--------GKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGY 158 (194)
T ss_dssp -----SS--------SCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSSCCCSCCCEESEEEEEEECTTSCEEEEEEEHH
T ss_pred -----cc--------cccccEEEECCEEEecCCcEecCCCCcCCceECCceeEEeccccEEEEEEECCCCCEEEEEEeCc
Confidence 00 012357999999999999865 56999999997 999999999999999999999999999999
Q ss_pred hhhHHhhhhhhcCceeeeecCChhHH
Q 024519 219 QARILQHECDHLDGTLYVDKMVPKTF 244 (266)
Q Consensus 219 ~AR~~QHEiDHL~GiLfiDrl~~~~~ 244 (266)
+|||||||||||+|+||+||+++...
T Consensus 159 ~Ar~iQHEiDHL~GiLfiDrl~~~~~ 184 (194)
T 1lm4_A 159 PAIVFQHEIDHLNGVMFYDHIDKNHP 184 (194)
T ss_dssp HHHHHHHHHHHHTTCCGGGGCCSSST
T ss_pred eeEhhhhHHHHhCCEeeeeecCcccC
Confidence 99999999999999999999998766
No 23
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR biosynthesis; 2.00A {Streptococcus mutans}
Probab=100.00 E-value=8.1e-54 Score=385.15 Aligned_cols=166 Identities=26% Similarity=0.367 Sum_probs=139.7
Q ss_pred cccccccccCcccccccccccCCCCCCCHHHHHHHHHHHHHHHh------------CCceeEecccCCccceEEEEecCc
Q 024519 73 AKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRS------------APGVGLAAPQIGVPLRIIVLEDTK 140 (266)
Q Consensus 73 m~~~~Iv~~gdPvLr~~a~~V~~~~i~~~el~~li~dM~~tM~~------------~~GvGLAAPQIGv~~rifVv~~~~ 140 (266)
|++++|+++|||+||++|++|+.. .++++++|++||++||++ ++||||||||||+++|||||+...
T Consensus 48 ~~~~~Iv~~gdPvLR~~a~pV~~~--~d~el~~Li~DM~eTM~~a~d~~~~~~~~~a~GVGLAAPQIGv~kRi~Vid~~~ 125 (238)
T 3l87_A 48 IDMNDIIREGHPTLRAVAQDVTFP--LNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRIIAVLIPN 125 (238)
T ss_dssp CCTTSSCCTTCGGGTSCCBCCCSS--CCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEEC
T ss_pred ccccCeeeCCCHHHhhccccCCCC--CCHHHHHHHHHHHHHHHHhccchhhhhcccCCceEEeccccCCceeEEEEEcCc
Confidence 468899999999999999999731 379999999999999997 479999999999999999998642
Q ss_pred hhhccchhHHHhhhcCCCCCeEEEEcCeeEecCCcee--cCcccCCccC-CCceeeccccceEEEEECCCCCeEEEEEcc
Q 024519 141 EYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTA--LFFEGCLSVN-GYRAVVERYLDIEVTGLDRDGQPIKVDATG 217 (266)
Q Consensus 141 ~~~~~~~~e~~~~~~~~~~~~~vlINP~I~~~s~~~~--~~~EGCLSvP-g~~~~V~R~~~I~V~y~D~~G~~~~~~~~G 217 (266)
.. .++..+.+..+..+.+||||+|+..|++.. ..+||||||| |+++.|+||.+|+|+|+|++|++++++++|
T Consensus 126 ~~-----~~~~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G 200 (238)
T 3l87_A 126 PE-----DKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKG 200 (238)
T ss_dssp CC-----C----CCSSSEEEEEEEEEEEEEEECSSEEEETTCCCCTTCCSCCCSCBCEESCEEEEEECTTCCEEEEEECH
T ss_pred cc-----ccccccccccCcccEEEECCEEEeccCceecccccCCCcccCCCccEEecChhheEEEEECCCCCEEEEEEeC
Confidence 10 000000011112358999999999998764 5789999999 699999999999999999999999999999
Q ss_pred hhhhHHhhhhhhcCceeeeecCChhHHh
Q 024519 218 WQARILQHECDHLDGTLYVDKMVPKTFR 245 (266)
Q Consensus 218 ~~AR~~QHEiDHL~GiLfiDrl~~~~~~ 245 (266)
|+|||||||||||+|+||+||++++..-
T Consensus 201 ~lAr~iQHEiDHLdGiLfiDrls~~~~~ 228 (238)
T 3l87_A 201 YQSIVVQHEIDHTNGIMFFDRINEKNPF 228 (238)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGBCSSCTT
T ss_pred hhhhHHhHHhHhcCCEeeeeecCCCCCc
Confidence 9999999999999999999999987653
No 24
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=27.02 E-value=41 Score=25.09 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=25.8
Q ss_pred cccceEEEEECCCCCeEEE--EEcchhhhHHhhhhhhcCceee
Q 024519 195 RYLDIEVTGLDRDGQPIKV--DATGWQARILQHECDHLDGTLY 235 (266)
Q Consensus 195 R~~~I~V~y~D~~G~~~~~--~~~G~~AR~~QHEiDHL~GiLf 235 (266)
....|+|+|.|++|+++.- .++|...--.+=+-.-..|-.+
T Consensus 5 k~~~VtV~YvDe~Gn~La~~~~ltG~vG~~Y~t~~k~I~GYtl 47 (85)
T 2kvz_A 5 KPNQVTVNYLDENNTSIAPSLYLSGLFNEAYNVPMKKIKGYTL 47 (85)
T ss_dssp CCCCEEEEEECSSSCEEEEEEEECCCTTCCCCCCCCCGGGEEE
T ss_pred cCCeEEEEEECCCCCCCCCCeEEeeeCCCcceecccccCCcEE
Confidence 4678999999999997654 4566654433333333444443
No 25
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=21.39 E-value=67 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=17.7
Q ss_pred cceEEEEECCCCCeEEEEEcc
Q 024519 197 LDIEVTGLDRDGQPIKVDATG 217 (266)
Q Consensus 197 ~~I~V~y~D~~G~~~~~~~~G 217 (266)
..+.|+|.|++|.++.+.-++
T Consensus 44 ~~~~ikY~DEenD~v~i~Sq~ 64 (87)
T 2bkf_A 44 NTIQIKYLDEENEEVSINSQG 64 (87)
T ss_dssp SSEEEEEECTTSCEEEECSHH
T ss_pred CceEEEEEcCCCCEEEEecHH
Confidence 367999999999999986654
Done!