Citrus Sinensis ID: 024519

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEGCPKLGVHEP
ccccccccccEEEccccccccccccEEECcccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccCEEEccccccccEEEEEEEcccccccccHHHHHHcccccccccEEEccEEEEccccccccccccccccccccEEcccccEEEEEEcccccEEEEEEEcEEEEEEEccccccccCEEEEccccccHHHHHHHHccccccccccccccc
***IHRFSVCHLPICLAKRHIKSAPIILCPTRKLVS********************AISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEG*********
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MEAIHRFSVCHLPICLAKRHIKSAPIILCPTRKLVSSPDFSNDVTFSPHRKARTTSAISKAGWLLGLGQNKKAKLPEIVQAGDPVLHEPAREVDPGEIGSERIQNIIDDMVKVMRSAPGVGLAAPQIGVPLRIIVLEDTKEYISYQSKEEIKAFDRRPFDLLMILNPKLKKKSDRTALFFEGCLSVNGYRAVVERYLDIEVTGLDRDGQPIKVDATGWQARILQHECDHLDGTLYVDKMVPKTFRIVENLDLPLAEGCPKLGVHEP

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Peptide deformylase 1A, chloroplastic Removes the formyl group from the N-terminal Met of newly synthesized proteins.probableB6RGY0
Peptide deformylase 1A, chloroplastic Removes the formyl group from the N-terminal Met of newly synthesized proteins.probableQ9FV53
Peptide deformylase 1A, chloroplastic Removes the formyl group from the N-terminal Met of newly synthesized proteins.probableQ9FUZ0

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.5.-.-Acting on carbon-nitrogen bonds, other than peptide bonds.probable
3.5.1.-11-cis-retinol dehydrogenase.probable
3.5.1.88Peptide deformylase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1ZXZ, chain A
Confidence level:very confident
Coverage over the Query: 74-265
View the alignment between query and template
View the model in PyMOL