BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024521
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 105 DVCMTLERFFYLNLPEVQKALHANRTNL-PYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 163
D C YLNLPEVQ ALHAN + + Y W++CS + + ++LPV + +IQ
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 164 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFH---KQQVGGWGTEYG 220
G+ VWV+SGD DSVVP+ +R R LA L V + W+ +++VGGW +Y
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTR---RSLAA-LELPVKTSWYPWYMAPTEREVGGWSVQYE 120
Query: 221 NLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 257
LT+VTVRGA H+VP +P++A LF F+ G +P
Sbjct: 121 G-LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 105 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 163
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 164 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 223
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 119
Query: 224 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNNTRPA 263
T V+VRGA H VP +P +AL LF F+ G+ +P T+ A
Sbjct: 120 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQTKNA 159
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 85/156 (54%), Gaps = 6/156 (3%)
Query: 105 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 163
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 164 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 223
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 224 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNN 259
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 105 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 163
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 164 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 223
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 224 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPN 258
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 105 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 163
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 164 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 223
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 224 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPN 258
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%), Gaps = 5/93 (5%)
Query: 3 WNKASNLLFVESPAGVGWSYSNTTSD-YNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
WNK +N+LF++SPAGVG+SY+NT+SD Y GD TA D + F+ W+E+FP +K R+ ++
Sbjct: 95 WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYI 154
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKG 94
GESYAGHY+P+L+ ++ SK N+KG
Sbjct: 155 AGESYAGHYVPELSQLV----HRSKNPVINLKG 183
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%), Gaps = 5/93 (5%)
Query: 3 WNKASNLLFVESPAGVGWSYSNTTSD-YNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
WNK +N+LF++SPAGVG+SY+NT+SD Y GD TA D + F+ W+E+FP +K R+ ++
Sbjct: 95 WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYI 154
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKG 94
GESYAGHY+P+L+ ++ SK N+KG
Sbjct: 155 AGESYAGHYVPELSQLV----HRSKNPVINLKG 183
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%), Gaps = 5/93 (5%)
Query: 3 WNKASNLLFVESPAGVGWSYSNTTSD-YNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
WNK +N+LF++SPAGVG+SY+NT+SD Y GD TA D + F+ W+E+FP +K R+ ++
Sbjct: 90 WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYI 149
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKG 94
GESYAGHY+P+L+ ++ SK N+KG
Sbjct: 150 AGESYAGHYVPELSQLV----HRSKNPVINLKG 178
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%), Gaps = 5/93 (5%)
Query: 3 WNKASNLLFVESPAGVGWSYSNTTSD-YNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
WNK +N+LF++SPAGVG+SY+NT+SD Y GD TA D + F+ W+E+FP +K R+ ++
Sbjct: 91 WNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYI 150
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKG 94
GESYAGHY+P+L+ ++ SK N+KG
Sbjct: 151 AGESYAGHYVPELSQLV----HRSKNPVINLKG 179
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 2/89 (2%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
+WNKA+N+LF ESPAGVG+SYSNT+SD + GD A+D + F++ W+E+FP + RE ++
Sbjct: 95 AWNKAANILFAESPAGVGFSYSNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYI 154
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKF 90
GES GH+IPQL+ V+ + +S F
Sbjct: 155 AGES--GHFIPQLSQVVYRNRNNSPFINF 181
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 7/96 (7%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
SWN +N+L++ESPAGVG+SYS+ Y D A+ + +++ FPE+K+ +LFL
Sbjct: 88 SWNLIANVLYLESPAGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFL 146
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAA 97
TGESYAG YIP LA +++ + N++G+A
Sbjct: 147 TGESYAGIYIPTLAVLVMQDPS------MNLQGLAV 176
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 115 YLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFS 172
YLN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++
Sbjct: 312 YLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYN 368
Query: 173 GDQDSVVPLLGSRTLIRELARDLNFEVT---VPYGAWFHKQQVGGWGTEYGNLLTFVTVR 229
GD D +G + L + + + V YG +Q+ G+ E+ ++ F+T++
Sbjct: 369 GDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGD--SGEQIAGFVKEFSHI-AFLTIK 425
Query: 230 GAAHMVPYAQPSRALHLFSSFVHGR 254
GA HMVP +P A +FS F++ +
Sbjct: 426 GAGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 7/95 (7%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEFKSRELFL 61
SWN +N+L++ESPAGVG+SYS+ Y D A+ + +++ FPE+K+ +LFL
Sbjct: 90 SWNLIANVLYLESPAGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFL 148
Query: 62 TGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVA 96
TGESYAG YIP LA +++ + N++G+A
Sbjct: 149 TGESYAGIYIPTLAVLVMQDPS------MNLQGLA 177
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEF--KSREL 59
SWN + ++F++ P VG+SYS ++ N + +D++ F+ ++++FPE+ K ++
Sbjct: 83 SWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELFFDQFPEYVNKGQDF 140
Query: 60 FLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGV 95
+ GESYAGHYIP A +L H K FN+ V
Sbjct: 141 HIAGESYAGHYIPVFASEILSH----KDRNFNLTSV 172
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 157 VLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWG 216
+ ++ +P+ V++GD+D + LG++ L + E F Q+V W
Sbjct: 319 AVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEE--------FASQKVRNWT 370
Query: 217 TEYGNLL----------TFVTVRGAAHMVPYAQPSRALHLFSSFVHG 253
+ + T++ V HMVP+ P AL + + ++HG
Sbjct: 371 ASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHV-------FMMNWYEKFPEF 54
SW +LLF++ P G G+S + D+ F+ N+++ FPE
Sbjct: 106 SWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPED 165
Query: 55 KSRELFLTGESYAGHYIPQLADVLLDHNAHSK--GFKFNIKGV 95
+R++ L+GESYAG YIP A+ +L+HN SK G +++K +
Sbjct: 166 LTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKAL 208
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 115 YLNLPEVQKALHANRTNLPYGWSMCSGV----LNYSDTDSNINILPVLKRIIQNGIPVWV 170
+ + P V +LH + + + W C+ L+ + +I++LP L +++GI + +
Sbjct: 322 FFSTPGVIDSLHLDSDKIDH-WKECTNSVGTKLSNPISKPSIHLLPGL---LESGIEIVL 377
Query: 171 FSGDQDSVVPLLGSRTLIREL--ARDLNFEVTVPYGAWFHK-------QQVGGWGTEYGN 221
F+GD+D + G I L F W HK ++ G+ +Y
Sbjct: 378 FNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGY-VKYDR 436
Query: 222 LLTFVTVRGAAHMVPYAQ 239
LTFV+V A+HMVP+ +
Sbjct: 437 NLTFVSVYNASHMVPFDK 454
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 2 SWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKFPEF--KSREL 59
SWN + ++F++ P VG+SYS ++ N + +D++ F+ ++++FPE+ K ++
Sbjct: 83 SWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELFFDQFPEYVNKGQDF 140
Query: 60 FLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGV 95
+ G SYAGHYIP A +L H K FN+ V
Sbjct: 141 HIAGASYAGHYIPVFASEILSH----KDRNFNLTSV 172
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 157 VLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWG 216
+ ++ +P+ V++GD+D + LG++ L + E F Q+V W
Sbjct: 319 AVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEE--------FASQKVRNWT 370
Query: 217 TEYGNLL----------TFVTVRGAAHMVPYAQPSRALHLFSSFVHG 253
+ + T++ V HMVP+ P AL + + ++HG
Sbjct: 371 ASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 115 YLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFS 172
YLN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++
Sbjct: 14 YLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYN 70
Query: 173 GDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHK-----QQVGGWGTEYGNLLTFVT 227
GD D +G + L N ++ V W K +Q+ G+ E+ ++ F+T
Sbjct: 71 GDVDMACNFMGDEWFVDSL----NQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI-AFLT 125
Query: 228 VRGAAHMVPYAQPSRALHLFSSFVHGR 254
++GA HMVP +P A +FS F++ +
Sbjct: 126 IKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 166 IPVWVFSGDQDSVVPLLGSRTLIRELAR 193
IP+WVF + D VVP+ SR L+++LA
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAE 336
>pdb|2C9K|A Chain A, Structure Of The Functional Form Of The
Mosquito-Larvicidal Cry4aa Toxin From Bacillus
Thuringiensis At 2.8 A Resolution
Length = 612
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 26/209 (12%)
Query: 28 DYNCGDASTARDMHVFM----MNWYEKFPEFKSRELFLTGESYAGHY----IPQLADVLL 79
D+ + S R H+F +N+YEK + F T HY I Q + V
Sbjct: 278 DFQYQEDSLTRRPHLFTWLDSLNFYEKAQTTPNN--FFTSHYNMFHYTLDNISQKSSVFG 335
Query: 80 DHNAHSKGFKFNIKGVA-ATKMSVGVDVCMTLERFF---YLNLPEVQKALHANRTNLPYG 135
+HN K +K + AT + + + ++L+ + Y N+ ++ + L
Sbjct: 336 NHNVTDK-----LKSLGLATNIYIFLLNVISLDNKYLNDYNNISKMDFFITNGTRLLEKE 390
Query: 136 WSMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDL 195
+ SG + Y D + NI LP+LKR + G P + D S + + I+ L+
Sbjct: 391 LTAGSGQITY-DVNKNIFGLPILKRREEQGNPTLFPTYDNYSHI-----LSFIKSLSIPA 444
Query: 196 NFEVTVPYGAWFHKQQVGGWGTEYGNLLT 224
++ V AW H V T Y +L T
Sbjct: 445 TYKTQVYTFAWTHS-SVDPKNTIYTHLTT 472
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 137 SMCSGVLNYSDTDSNINILPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARD 194
+ G++ +S TD + LK I IPV V GD D VVP S L +L ++
Sbjct: 199 AQYDGIVAFSQTDFTND----LKGIT---IPVLVIHGDDDQVVPYADSGVLSAKLVKN 249
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 161 IIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFH 208
+ Q P + GDQD VVP + + +++ + F V +FH
Sbjct: 146 LTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASHFFH 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,436,596
Number of Sequences: 62578
Number of extensions: 359422
Number of successful extensions: 993
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 24
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)