BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024522
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q48TV1|GLMM_STRPM Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M28
(strain MGAS6180) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|A2REP8|GLMM_STRPG Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1J6W8|GLMM_STRPF Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M4
(strain MGAS10750) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1JH49|GLMM_STRPD Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q5XCE0|GLMM_STRP6 Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|P0DB39|GLMM_STRPQ Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|P0DB38|GLMM_STRP3 Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1JM03|GLMM_STRPC Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1JC19|GLMM_STRPB Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M12
(strain MGAS2096) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q8P179|GLMM_STRP8 Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=glmM PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTH 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|Q1B1Z8|PATR_MYCSS Putative phenylalanine aminotransferase OS=Mycobacterium sp.
(strain MCS) GN=pat PE=3 SV=1
Length = 358
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 35/115 (30%)
Query: 110 DTPDYAPGTQKNVSGEVFRWNN--VSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQN 167
D P Y PG K V G + +N V GP + + A IE+ QL R NG
Sbjct: 11 DIPAYTPG--KTVPGAIKIASNETVHGP--------LPSVRAAIEKATDQLNRYPDNGYL 60
Query: 168 ELLEYLKTLEPQNLK-----------------------ELTSSAGEDVVLAMNTF 199
EL E+L + +NL ++TSS G++V+ A +F
Sbjct: 61 ELREHLASHLDKNLGAGAFTPEQIAVGCGSVSLCQQLIQITSSVGDEVIFAWRSF 115
>sp|A1UN51|PATR_MYCSK Putative phenylalanine aminotransferase OS=Mycobacterium sp.
(strain KMS) GN=pat PE=3 SV=1
Length = 358
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 35/115 (30%)
Query: 110 DTPDYAPGTQKNVSGEVFRWNN--VSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQN 167
D P Y PG K V G + +N V GP + + A IE+ QL R NG
Sbjct: 11 DIPAYTPG--KTVPGAIKIASNETVHGP--------LPSVRAAIEKATDQLNRYPDNGYL 60
Query: 168 ELLEYLKTLEPQNLK-----------------------ELTSSAGEDVVLAMNTF 199
EL E+L + +NL ++TSS G++V+ A +F
Sbjct: 61 ELREHLASHLDKNLGAGAFTPEQIAVGCGSVSLCQQLIQITSSVGDEVIFAWRSF 115
>sp|Q99ZW8|GLMM_STRP1 Phosphoglucosamine mutase OS=Streptococcus pyogenes serotype M1
GN=glmM PE=3 SV=1
Length = 451
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 118 TQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE 177
T ++SG + +G + A+ L AEI + + NG N + + + +
Sbjct: 167 TGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEK-----PNGLN-INDGVGSTR 220
Query: 178 PQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQM 212
P+ L+EL G D+ LA + RL+AV + G++
Sbjct: 221 PEQLQELVKETGADLGLAFDGDSDRLIAVDETGEI 255
>sp|A3Q7J9|PATR_MYCSJ Putative phenylalanine aminotransferase OS=Mycobacterium sp.
(strain JLS) GN=pat PE=3 SV=1
Length = 358
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 35/115 (30%)
Query: 110 DTPDYAPGTQKNVSGEVFRWNN--VSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQN 167
D P Y PG K V G + +N V GP + + A IE+ QL R NG
Sbjct: 11 DIPAYTPG--KTVPGAIKIASNETVHGP--------LPSVRAAIEKATDQLNRYPDNGYL 60
Query: 168 ELLEYLKTLEPQNLK-----------------------ELTSSAGEDVVLAMNTF 199
EL E+L + +NL ++TSS G++V+ A +F
Sbjct: 61 ELREHLASHLDKNLGAGAFTPEQIAVGCGSVSLCQQLIQITSSVGDEVIFAWRSF 115
>sp|Q5M469|KCY_STRT2 Cytidylate kinase OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=cmk PE=3 SV=1
Length = 226
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 64 TTVAENLAQ-LMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDK 108
+TVA+ +A+ L Y+ + TG M+++A Y L LQ L + +PE+LD+
Sbjct: 17 STVAKIIAKNLGYTYLDTGAMYRSATY-LALQNGLTEENVPEILDQ 61
>sp|Q5LZL6|KCY_STRT1 Cytidylate kinase OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=cmk PE=3 SV=1
Length = 226
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 64 TTVAENLAQ-LMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDK 108
+TVA+ +A+ L Y+ + TG M+++A Y L LQ L + +PE+LD+
Sbjct: 17 STVAKIIAKNLGYTYLDTGAMYRSATY-LALQNGLTEENVPEILDQ 61
>sp|P19735|PRP6_YEAST Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRP6 PE=1 SV=1
Length = 899
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 92 ELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEK-----IDAKKYIE- 145
+L++SL V E +D D D+ ++N E + P+ +D K E
Sbjct: 106 DLKESLAAVTESEWMDIPDATDFTRRNKRNRIQEQLNRKTYAAPDSLIPGNVDLNKLTEE 165
Query: 146 ---FLEAEIEELNRQLGRKATN--------GQNELLEYLKTLEPQNLKELTSSAGEDVVL 194
L+++I+E QL + A+N + L YLK LE + L+ + ED+
Sbjct: 166 REKLLQSQIDENLAQLTKNASNPIQVNKPNAATDALSYLKDLENDRVNSLSDATLEDLQ- 224
Query: 195 AMNTFIK 201
M T +K
Sbjct: 225 KMRTILK 231
>sp|O34596|YOBK_BACSU Uncharacterized protein YobK OS=Bacillus subtilis (strain 168)
GN=yobK PE=1 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 71 AQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPE---VLDKKDTPDYAPGTQKNVSGE-- 125
A ++ V++ GY F +A + E L + V++ D Y T K GE
Sbjct: 52 AGGLFGVLVLGYNFDHASVVNRTNEYKEHYGLTDGLVVIEDVDYFAYCLDTNKMKDGECP 111
Query: 126 VFRWNNVSGPEKIDAKKYIEFLEAEIEE 153
V W+ V G + A +IEF +I+E
Sbjct: 112 VVEWDRVIGYQDTVADSFIEFFYNKIQE 139
>sp|Q1J443|RECF_STRPF DNA replication and repair protein RecF OS=Streptococcus pyogenes
serotype M4 (strain MGAS10750) GN=recF PE=3 SV=1
Length = 368
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 34/192 (17%)
Query: 57 QFFAVTVTTVAENLAQLMYSVMMTGYMFKNA------QYRLELQQSLEQVALPE----VL 106
Q A + + E LA VM F NA + + LE ++L V
Sbjct: 169 QIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVF 228
Query: 107 DKKDT--PDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATN 164
DKK + + +KN + FR N GP + D YI + A A+
Sbjct: 229 DKKTSIYQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANF----------ASQ 278
Query: 165 GQN-ELLEYLKTLEPQNLKELTSSAGEDVVLAM--------NTFIKRLLAVSDPGQMKTS 215
GQ+ L+ LK E +K LT G++ +L + NT +LL ++T
Sbjct: 279 GQHRSLILSLKMAEVSLMKALT---GDNPILLLDDVMSELDNTRQTKLLETVIKENVQTF 335
Query: 216 VTETSAPELAKL 227
+T TS L++L
Sbjct: 336 ITTTSLDHLSQL 347
>sp|P01578|IFNB1_BOVIN Interferon beta-1 OS=Bos taurus GN=IFNB1 PE=3 SV=1
Length = 186
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 151 IEELNRQLGRKATNGQNELLEYLKTLEPQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPG 210
++E + LG+ + Q+ L + P+ +K+ ED +L M ++ + +
Sbjct: 35 LKECQKLLGQLPSTSQHCLEARMDFQMPEEMKQEQQFQKEDAILVMYEVLQHIFGILTRD 94
Query: 211 QMKTSVTETSAPELAKLLYWLM 232
T +ET +L K LYW M
Sbjct: 95 FSSTGWSETIIEDLLKELYWQM 116
>sp|P0DD85|RECF_STRPQ DNA replication and repair protein RecF OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=recF PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 34/192 (17%)
Query: 57 QFFAVTVTTVAENLAQLMYSVMMTGYMFKNA------QYRLELQQSLEQVALPE----VL 106
Q A + + E LA VM F NA + + LE ++L V
Sbjct: 169 QIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVF 228
Query: 107 DKKDT--PDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATN 164
DKK + +KN + FR N GP + D YI + A A+
Sbjct: 229 DKKTNIYQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANF----------ASQ 278
Query: 165 GQN-ELLEYLKTLEPQNLKELTSSAGEDVVLAM--------NTFIKRLLAVSDPGQMKTS 215
GQ+ L+ LK E +K LT G++ +L + NT +LL ++T
Sbjct: 279 GQHRSLILSLKMAEVSLMKALT---GDNPILLLDDVMSELDNTRQTKLLETVIKENVQTF 335
Query: 216 VTETSAPELAKL 227
+T TS L++L
Sbjct: 336 ITTTSLDHLSQL 347
>sp|P0DD84|RECF_STRP3 DNA replication and repair protein RecF OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=recF PE=3
SV=1
Length = 368
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 34/192 (17%)
Query: 57 QFFAVTVTTVAENLAQLMYSVMMTGYMFKNA------QYRLELQQSLEQVALPE----VL 106
Q A + + E LA VM F NA + + LE ++L V
Sbjct: 169 QIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVF 228
Query: 107 DKKDT--PDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATN 164
DKK + +KN + FR N GP + D YI + A A+
Sbjct: 229 DKKTNIYQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANF----------ASQ 278
Query: 165 GQN-ELLEYLKTLEPQNLKELTSSAGEDVVLAM--------NTFIKRLLAVSDPGQMKTS 215
GQ+ L+ LK E +K LT G++ +L + NT +LL ++T
Sbjct: 279 GQHRSLILSLKMAEVSLMKALT---GDNPILLLDDVMSELDNTRQTKLLETVIKENVQTF 335
Query: 216 VTETSAPELAKL 227
+T TS L++L
Sbjct: 336 ITTTSLDHLSQL 347
>sp|B5XJC1|RECF_STRPZ DNA replication and repair protein RecF OS=Streptococcus pyogenes
serotype M49 (strain NZ131) GN=recF PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 34/192 (17%)
Query: 57 QFFAVTVTTVAENLAQLMYSVMMTGYMFKNA------QYRLELQQSLEQVALPE----VL 106
Q A + + E LA VM F NA + + LE ++L V
Sbjct: 169 QIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVF 228
Query: 107 DKKDT--PDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATN 164
DKK + +KN + FR N GP + D YI + A A+
Sbjct: 229 DKKTNIYQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANF----------ASQ 278
Query: 165 GQN-ELLEYLKTLEPQNLKELTSSAGEDVVLAM--------NTFIKRLLAVSDPGQMKTS 215
GQ+ L+ LK E +K LT G++ +L + NT +LL ++T
Sbjct: 279 GQHRSLILSLKMAEVSLMKALT---GDNPILLLDDVMSELDNTRQTKLLETVIKENVQTF 335
Query: 216 VTETSAPELAKL 227
+T TS L++L
Sbjct: 336 ITTTSLDHLSQL 347
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,899,859
Number of Sequences: 539616
Number of extensions: 3682831
Number of successful extensions: 12499
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 12495
Number of HSP's gapped (non-prelim): 57
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)