Query 024522
Match_columns 266
No_of_seqs 168 out of 215
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 100.0 5.8E-34 1.3E-38 221.7 9.8 85 14-98 1-86 (86)
2 PF05542 DUF760: Protein of un 100.0 5.7E-29 1.2E-33 193.7 9.9 85 167-252 1-86 (86)
3 PF07531 TAFH: NHR1 homology t 57.2 5.4 0.00012 32.2 1.1 35 179-213 11-47 (96)
4 PF04977 DivIC: Septum formati 52.0 26 0.00057 25.5 4.0 40 146-186 21-62 (80)
5 smart00549 TAFH TAF homology. 42.4 20 0.00042 28.8 2.1 34 180-213 11-46 (92)
6 COG1391 GlnE Glutamine synthet 42.2 2.1E+02 0.0044 31.8 10.2 79 128-206 244-325 (963)
7 COG1080 PtsA Phosphoenolpyruva 28.8 1.7E+02 0.0038 30.6 6.9 41 164-204 452-494 (574)
8 COG3074 Uncharacterized protei 27.3 2.5E+02 0.0055 21.7 5.9 61 139-208 15-77 (79)
9 PF14261 DUF4351: Domain of un 25.4 1.9E+02 0.0041 21.0 4.8 38 149-186 7-44 (59)
10 PF12726 SEN1_N: SEN1 N termin 24.4 5.1E+02 0.011 27.3 9.6 101 146-251 5-106 (727)
11 COG1576 Uncharacterized conser 21.4 1E+02 0.0023 26.9 3.2 81 1-81 1-96 (155)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=100.00 E-value=5.8e-34 Score=221.72 Aligned_cols=85 Identities=44% Similarity=0.733 Sum_probs=83.8
Q ss_pred chHHHHHHhcCchHHHHHhhcCCHHHHHHHHHHHHHhhcCC-CCCCceeEEEechhhHHHHHHHHHhHhHhhcchHHHHH
Q 024522 14 DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTL-PPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLE 92 (266)
Q Consensus 14 n~L~~ylq~~~pe~i~~l~~~~s~ev~e~i~~~v~~lLG~l-p~~~f~v~i~ts~e~L~~Ll~s~mMtGYfLrnaE~R~~ 92 (266)
|.||+|||+++||.+++|+++|||||+|+|++||.++||.+ |+++|+++|+|+|++||+||+|+|||||||||||||++
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~ 80 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQRLE 80 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 024522 93 LQQSLE 98 (266)
Q Consensus 93 Le~sl~ 98 (266)
||++|+
T Consensus 81 Le~sL~ 86 (86)
T PF05542_consen 81 LERSLK 86 (86)
T ss_pred HHHhcC
Confidence 999985
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.96 E-value=5.7e-29 Score=193.69 Aligned_cols=85 Identities=36% Similarity=0.668 Sum_probs=81.8
Q ss_pred hhHHHHHhhcCHHHHHHhhhccCHHHHHHHHHHHHHhhccc-CCCCCCccccccCHHHHHHHHHHHHHHhhhhhhhHHHH
Q 024522 167 NELLEYLKTLEPQNLKELTSSAGEDVVLAMNTFIKRLLAVS-DPGQMKTSVTETSAPELAKLLYWLMVVGYSIRNIEVRF 245 (266)
Q Consensus 167 n~Ll~Yl~sl~pe~L~~la~~~S~ev~~~i~~~v~~LlG~l-~~~~~~~~i~~ts~~~La~Ll~waM~~GyfLR~~E~R~ 245 (266)
|+|++||++++||.++++++++||||+++|+++|++++|.+ |+++|++++. +|+++||+||||+||+|||||++|+|+
T Consensus 1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~-~s~~~La~L~~~~mm~GYfLr~~E~R~ 79 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQ-TSRENLAQLLAWSMMTGYFLRNAEQRL 79 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeE-ECHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 8888888877 999999999999999999999999999
Q ss_pred HHHHhhC
Q 024522 246 DMERVLG 252 (266)
Q Consensus 246 el~~sL~ 252 (266)
+|+++|.
T Consensus 80 ~Le~sL~ 86 (86)
T PF05542_consen 80 ELERSLK 86 (86)
T ss_pred HHHHhcC
Confidence 9999984
No 3
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=57.16 E-value=5.4 Score=32.16 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=28.4
Q ss_pred HHHHHhhhc-cCHHHHHHHHHHHHHhh-cccCCCCCC
Q 024522 179 QNLKELTSS-AGEDVVLAMNTFIKRLL-AVSDPGQMK 213 (266)
Q Consensus 179 e~L~~la~~-~S~ev~~~i~~~v~~Ll-G~l~~~~~~ 213 (266)
-+|.++|+. .|||+-+.++..|++|+ |.++++.|.
T Consensus 11 ~tLi~las~~~spev~~~Vr~LV~~L~~~~i~~EeF~ 47 (96)
T PF07531_consen 11 NTLIQLASDKQSPEVGENVRELVQNLVDGKIEAEEFT 47 (96)
T ss_dssp HHHHHHHCCSC-CCHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 378899999 99999999999999999 667766663
No 4
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=52.00 E-value=26 Score=25.50 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHHHHHhhc--CHHHHHHhhh
Q 024522 146 FLEAEIEELNRQLGRKATNGQNELLEYLKTL--EPQNLKELTS 186 (266)
Q Consensus 146 ~L~~~~~sl~~q~~~~~~~~~n~Ll~Yl~sl--~pe~L~~la~ 186 (266)
+++.+++++++++... .....+|...+..+ +|+.+.++|+
T Consensus 21 ~~~~ei~~l~~~i~~l-~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEEL-KKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566666666654432 12357777777777 8888888876
No 5
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=42.43 E-value=20 Score=28.83 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHhhhccC-HHHHHHHHHHHHHhh-cccCCCCCC
Q 024522 180 NLKELTSSAG-EDVVLAMNTFIKRLL-AVSDPGQMK 213 (266)
Q Consensus 180 ~L~~la~~~S-~ev~~~i~~~v~~Ll-G~l~~~~~~ 213 (266)
+|.++|+..+ ||+-+-++..|++|+ |.++++.|.
T Consensus 11 tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~ 46 (92)
T smart00549 11 TLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFT 46 (92)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6889999999 999999999999999 677777664
No 6
>COG1391 GlnE Glutamine synthetase adenylyltransferase [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms]
Probab=42.23 E-value=2.1e+02 Score=31.82 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=55.3
Q ss_pred eccCCCCCCccCHHHHHHHHHHHHHHHHHH--Hh-hhccCCchhHHHHHhhcCHHHHHHhhhccCHHHHHHHHHHHHHhh
Q 024522 128 RWNNVSGPEKIDAKKYIEFLEAEIEELNRQ--LG-RKATNGQNELLEYLKTLEPQNLKELTSSAGEDVVLAMNTFIKRLL 204 (266)
Q Consensus 128 ~~~~~~~~~~~~a~~yi~~L~~~~~sl~~q--~~-~~~~~~~n~Ll~Yl~sl~pe~L~~la~~~S~ev~~~i~~~v~~Ll 204 (266)
|..+++||..+.-..-+.--|.+=..+++. +| +--....+.+.+|++-+.|=+-.+|-+-.=-+.+..|++.|++-.
T Consensus 244 RP~g~SgpLv~s~~A~e~YYq~~Gr~WER~AmiKAR~~~gd~~~~~~~Lr~l~PfVfRrylD~s~I~~ir~mKr~I~~ev 323 (963)
T COG1391 244 RPFGDSGPLVLSLAALEDYYQEQGRDWERYAMIKARPVAGDAELGQAFLRELTPFVFRRYLDYSAIADLRAMKRQIEAEV 323 (963)
T ss_pred CCCCCCCCccccHHHHHHHHHHhcccHHHHHHHhhcccCChHHHHHHHHHhcCCeeehhhcchHHHHHHHHHHHHHHHHh
Confidence 445677876554333333334455566665 22 223456789999999999999999888877788889999999887
Q ss_pred cc
Q 024522 205 AV 206 (266)
Q Consensus 205 G~ 206 (266)
+.
T Consensus 324 ~~ 325 (963)
T COG1391 324 RR 325 (963)
T ss_pred cc
Confidence 54
No 7
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=28.81 E-value=1.7e+02 Score=30.57 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=36.5
Q ss_pred CCchhHHHHHhhcCH--HHHHHhhhccCHHHHHHHHHHHHHhh
Q 024522 164 NGQNELLEYLKTLEP--QNLKELTSSAGEDVVLAMNTFIKRLL 204 (266)
Q Consensus 164 ~~~n~Ll~Yl~sl~p--e~L~~la~~~S~ev~~~i~~~v~~Ll 204 (266)
-..|||-||....|. +.|+.+.++..|-|+.+|++.|++-=
T Consensus 452 IGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah 494 (574)
T COG1080 452 IGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAH 494 (574)
T ss_pred ecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHH
Confidence 378999999999885 68999999999999999999998643
No 8
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.30 E-value=2.5e+02 Score=21.72 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHh--hcCHHHHHHhhhccCHHHHHHHHHHHHHhhcccC
Q 024522 139 DAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLK--TLEPQNLKELTSSAGEDVVLAMNTFIKRLLAVSD 208 (266)
Q Consensus 139 ~a~~yi~~L~~~~~sl~~q~~~~~~~~~n~Ll~Yl~--sl~pe~L~~la~~~S~ev~~~i~~~v~~LlG~l~ 208 (266)
.|.+-|..||-++++|+.. +|.|-+-++ .-..|.|.+=.... ++-...-...+.+|||..+
T Consensus 15 qAvdTI~LLQmEieELKEk--------nn~l~~e~q~~q~~reaL~~eneql-k~e~~~WQerlrsLLGkme 77 (79)
T COG3074 15 QAIDTITLLQMEIEELKEK--------NNSLSQEVQNAQHQREALERENEQL-KEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH--------hhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhc
Confidence 4667788889999888843 455555554 22334444433333 3333444556677777653
No 9
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=25.39 E-value=1.9e+02 Score=20.97 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhccCCchhHHHHHhhcCHHHHHHhhh
Q 024522 149 AEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKELTS 186 (266)
Q Consensus 149 ~~~~sl~~q~~~~~~~~~n~Ll~Yl~sl~pe~L~~la~ 186 (266)
.+..-+.+++.++-+.-+..+..=|++++.++|..++.
T Consensus 7 g~~~lllRlL~rrFG~lp~~~~~~I~~l~~eqLE~l~e 44 (59)
T PF14261_consen 7 GEARLLLRLLTRRFGELPPEIQERIQQLSLEQLEALAE 44 (59)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHcCCHHHHHHHHH
Confidence 34455567777777888888889999999999988875
No 10
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.38 E-value=5.1e+02 Score=27.30 Aligned_cols=101 Identities=8% Similarity=0.069 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHHHHHhhcCHHHHHHhhhccCHHHHHHHHHHHHHhhcccCCCCCCccccccCHHHHH
Q 024522 146 FLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKELTSSAGEDVVLAMNTFIKRLLAVSDPGQMKTSVTETSAPELA 225 (266)
Q Consensus 146 ~L~~~~~sl~~q~~~~~~~~~n~Ll~Yl~sl~pe~L~~la~~~S~ev~~~i~~~v~~LlG~l~~~~~~~~i~~ts~~~La 225 (266)
.+...+++|.+.+..-...+..-+-.|.++.+++.|+.+.+....==.+.|-++.+..-..+.... .. +....+.
T Consensus 5 ~l~~~L~~C~~CV~~~~~~k~~~~~~~~~~~~~e~V~~f~~~l~~wd~~rI~~~L~~~~~~~~~~~----~~-~~~~~~~ 79 (727)
T PF12726_consen 5 RLSECLSSCDKCVRNYHRGKKSLRQRFAESFPEENVDQFFNMLDNWDIQRILPGLDKAKSILESIE----PM-TRSRALL 79 (727)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----CC-CccchHH
Confidence 466778888888776555567788889999999999999887655444555555444443322100 00 1114566
Q ss_pred HHHHHHHHHhhhhhhhH-HHHHHHHhh
Q 024522 226 KLLYWLMVVGYSIRNIE-VRFDMERVL 251 (266)
Q Consensus 226 ~Ll~waM~~GyfLR~~E-~R~el~~sL 251 (266)
-.+||||..=..||+=+ .|..|...+
T Consensus 80 ~aiyE~L~~p~lLr~~~~l~~~F~~~f 106 (727)
T PF12726_consen 80 LAIYECLCNPALLRDDEELRELFDAIF 106 (727)
T ss_pred HHHHHHHhCHHHHcCcHHHHHHHHHHH
Confidence 77899999999999555 788888665
No 11
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=1e+02 Score=26.91 Aligned_cols=81 Identities=15% Similarity=0.225 Sum_probs=57.5
Q ss_pred Ccccc---c-cccCCCcchHHHHHHhcCchH---HHHHhhcCCHH---HHHHHHHHHHHhhcCCCCCCceeEEE-----e
Q 024522 1 MRCFV---N-WQPKGRRDILLEYVKNVQPEF---MELFVKRAPEQ---VVDAMRQTVTNMIGTLPPQFFAVTVT-----T 65 (266)
Q Consensus 1 ~~~~~---~-~~~~~~~n~L~~ylq~~~pe~---i~~l~~~~s~e---v~e~i~~~v~~lLG~lp~~~f~v~i~-----t 65 (266)
|+|.+ + ++++--+..+-+|.++++|.. +..+.....++ +..+++.-=..|+-.+|++.+-++.. .
T Consensus 1 Mki~iiaVGk~~~~~~~~g~~eY~KR~~~~~~leliei~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~vi~Ld~~Gk~~ 80 (155)
T COG1576 1 MKINIIAVGKKKPKYVKDGIAEYLKRFPRYLKLELIEIPEEKRGKNASAELIKKKEGEAILAAIPKGSYVVLLDIRGKAL 80 (155)
T ss_pred CeEEEEEeeccchHHHHHHHHHHHHHhccccCceEEecCCccCccccCHHHHHHHHHHHHHHhcCCCCeEEEEecCCCcC
Confidence 56654 4 355666688899999998633 22222222222 67889999999999999988887765 4
Q ss_pred chhhHHHHHHHHHhHh
Q 024522 66 VAENLAQLMYSVMMTG 81 (266)
Q Consensus 66 s~e~L~~Ll~s~mMtG 81 (266)
+-|.||..+-..-..|
T Consensus 81 sSe~fA~~l~~~~~~G 96 (155)
T COG1576 81 SSEEFADFLERLRDDG 96 (155)
T ss_pred ChHHHHHHHHHHHhcC
Confidence 6788998888777766
Done!