Query 024522
Match_columns 266
No_of_seqs 168 out of 215
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h7b_A Core-binding factor, ML 48.6 7.2 0.00025 30.8 1.7 33 180-212 15-48 (105)
2 2p6v_A Transcription initiatio 40.0 16 0.00055 29.2 2.5 41 168-213 21-64 (114)
3 1hlo_A Protein (transcription 37.2 28 0.00095 25.3 3.3 21 139-159 54-74 (80)
4 1nkp_B MAX protein, MYC proto- 31.9 41 0.0014 24.4 3.5 21 139-159 44-64 (83)
5 1lj2_A NSP3-C, nonstructural R 31.0 68 0.0023 25.3 4.7 66 139-204 10-84 (110)
6 1jeb_A Hemoglobin zeta chain; 30.8 20 0.00069 28.0 1.7 69 14-82 65-141 (142)
7 2w72_C Human hemoglobin A; iro 30.6 24 0.00081 27.5 2.1 69 14-82 64-140 (141)
8 1am9_A Srebp-1A, protein (ster 30.3 36 0.0012 24.9 2.9 20 139-158 47-66 (82)
9 1lhs_A Myoglobin; oxygen stora 28.8 25 0.00086 27.9 2.0 69 14-82 70-146 (153)
10 3coq_A Regulatory protein GAL4 27.3 74 0.0025 22.5 4.2 21 140-160 43-63 (89)
11 2r80_A Hemoglobin subunit alph 27.0 36 0.0012 26.7 2.6 69 14-82 64-140 (141)
12 1out_A Hemoglobin I; heme, oxy 26.4 19 0.00064 28.5 0.8 69 14-82 66-142 (143)
13 1spg_A Hemoglobin; carbon mono 26.2 19 0.00065 28.5 0.8 69 14-82 67-143 (144)
14 3mvc_A Globin protein 6; oxyge 26.1 74 0.0025 25.6 4.4 68 16-83 68-153 (161)
15 1out_B Hemoglobin I; heme, oxy 25.2 9.3 0.00032 30.4 -1.2 70 14-83 69-146 (146)
16 2dc3_A Cytoglobin; myoglobin, 25.0 25 0.00086 29.3 1.4 70 14-83 90-170 (193)
17 1xq5_A Hemoglobin alpha-1 chai 24.5 20 0.00069 28.2 0.6 69 14-82 66-142 (143)
18 3dve_B Voltage-dependent N-typ 22.4 37 0.0013 19.9 1.3 18 69-86 1-18 (23)
19 1a6m_A Myoglobin; heme protein 21.4 56 0.0019 25.8 2.7 69 14-82 70-146 (151)
20 1tu9_A Hypothetical protein PA 21.2 25 0.00087 27.0 0.6 67 14-82 55-132 (134)
21 3dvk_B Voltage-dependent R-typ 20.5 39 0.0013 19.7 1.2 18 69-86 2-19 (23)
22 1xkm_B Distinctin chain B; por 20.5 32 0.0011 20.2 0.8 16 138-153 7-22 (26)
No 1
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=48.58 E-value=7.2 Score=30.84 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHHhhhccCHHHHHHHHHHHHHhh-cccCCCCC
Q 024522 180 NLKELTSSAGEDVVLAMNTFIKRLL-AVSDPGQM 212 (266)
Q Consensus 180 ~L~~la~~~S~ev~~~i~~~v~~Ll-G~l~~~~~ 212 (266)
||.+++...+||+-+-++..|++|+ |.++++.|
T Consensus 15 tLi~la~~~~pev~~~Vr~LVq~Ll~~~i~~EeF 48 (105)
T 2h7b_A 15 TLQQFGNDISPEIGERVRTLVLGLVNSTLTIEEF 48 (105)
T ss_dssp HHHHSHHHHCHHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHhCCCCHHHH
Confidence 6788888999999999999999999 66776655
No 2
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=40.04 E-value=16 Score=29.23 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=32.3
Q ss_pred hHHHHHhhcCHHHHHHhhhc--cCHHHHHHHHHHHHHhh-cccCCCCCC
Q 024522 168 ELLEYLKTLEPQNLKELTSS--AGEDVVLAMNTFIKRLL-AVSDPGQMK 213 (266)
Q Consensus 168 ~Ll~Yl~sl~pe~L~~la~~--~S~ev~~~i~~~v~~Ll-G~l~~~~~~ 213 (266)
.+..++. +|-+++.. .|||+-+-++..|++|+ |.++++.|.
T Consensus 21 Kck~FL~-----tLi~las~~~~spev~~~Vr~LVq~Ll~~~i~~EeFt 64 (114)
T 2p6v_A 21 XCXNFLS-----TLIXLASSGXQSTETAANVXELVQNLLDGXIEAEDFT 64 (114)
T ss_dssp HHHHHHH-----HHHHHHTSSSSCHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHH-----HHHHHHhccccChHHHHHHHHHHHHHHHccCCHHHHH
Confidence 4445553 67888977 99999999999999999 677776663
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=37.19 E-value=28 Score=25.28 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 024522 139 DAKKYIEFLEAEIEELNRQLG 159 (266)
Q Consensus 139 ~a~~yi~~L~~~~~sl~~q~~ 159 (266)
.|.+||.+|+.++..|+.++.
T Consensus 54 ~Ai~YI~~L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 54 KATEYIQYMRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999988754
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.92 E-value=41 Score=24.44 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 024522 139 DAKKYIEFLEAEIEELNRQLG 159 (266)
Q Consensus 139 ~a~~yi~~L~~~~~sl~~q~~ 159 (266)
.|.+||..|+.+...++.++.
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~ 64 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDID 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588999999988888877643
No 5
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=31.05 E-value=68 Score=25.35 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHhhcC--H----HHHHHhhhc---cCHHHHHHHHHHHHHhh
Q 024522 139 DAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLE--P----QNLKELTSS---AGEDVVLAMNTFIKRLL 204 (266)
Q Consensus 139 ~a~~yi~~L~~~~~sl~~q~~~~~~~~~n~Ll~Yl~sl~--p----e~L~~la~~---~S~ev~~~i~~~v~~Ll 204 (266)
+.+++|-.||-.-..++++++.+-++--..+-.|++|+. + +..|+|-.. -..++++-||..+..|+
T Consensus 10 qQQ~~In~lq~~~~klE~dlq~ki~slisSiEw~l~Smel~de~K~DieQqLnsid~Inp~~aiddiE~~IrnlI 84 (110)
T 1lj2_A 10 QQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLI 84 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHhccccccCcchhHhHHHHHHHHHH
Confidence 345566666666666666666554555667888998865 3 234444322 23355566666666665
No 6
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=30.77 E-value=20 Score=27.95 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=49.7
Q ss_pred chHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~p--e~i~~l~~------~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|-.+++.++- ..+.+|++ ...|+-++++...+-..|...-++.|+..+...+..+-..++..|..||
T Consensus 65 ~~l~~~v~~ld~l~~~l~~L~~~H~~k~~V~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~~l~~~y 141 (142)
T 1jeb_A 65 AAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTAEAHAAWDKFLSVVSSVLTEKY 141 (142)
T ss_dssp HHHHHHHHTTTCHHHHTHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555543 34444443 4467888888888777777765567887788999999999999999998
No 7
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=30.65 E-value=24 Score=27.52 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=50.4
Q ss_pred chHHHHHHhcCch--HHHHHh------hcCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQPE--FMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~pe--~i~~l~------~~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|..+++.++-. .+..++ ....|+-++++...+-..|...-++.|...+...+..+-..++.+|..||
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~l~~~y 140 (141)
T 2w72_C 64 DALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 (141)
T ss_dssp HHHHHHHHTTTSHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566655542 555555 34567888888888877777765567877778889999999999999998
No 8
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.28 E-value=36 Score=24.94 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 024522 139 DAKKYIEFLEAEIEELNRQL 158 (266)
Q Consensus 139 ~a~~yi~~L~~~~~sl~~q~ 158 (266)
+|.+||.+|+.++..|+.+.
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988764
No 9
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=28.84 E-value=25 Score=27.94 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=53.9
Q ss_pred chHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~p--e~i~~l~~------~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|-.+++.++- ..+.+|++ ...|+-++++...+-..|...-++.|...+...+..+-..++..|..+|
T Consensus 70 ~al~~~v~~ldd~~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 146 (153)
T 1lhs_A 70 TALGRILKQKNNHEQELKPLAESHATKHKIPVKYLEFICEIIVKVIAEKHPSDFGADSQAAMKKALELFRNDMASKY 146 (153)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777664 55666664 4567888888888888887766667888888999999999999999888
No 10
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.26 E-value=74 Score=22.51 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 024522 140 AKKYIEFLEAEIEELNRQLGR 160 (266)
Q Consensus 140 a~~yi~~L~~~~~sl~~q~~~ 160 (266)
...|+..|+.++..|+..+..
T Consensus 43 ~~~~~~~L~~r~~~le~~l~~ 63 (89)
T 3coq_A 43 TRAHLTEVESRLERLEQLFLL 63 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999987654
No 11
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=26.96 E-value=36 Score=26.65 Aligned_cols=69 Identities=10% Similarity=0.175 Sum_probs=52.5
Q ss_pred chHHHHHHhcCc--hHHHHHh------hcCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~p--e~i~~l~------~~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|..+++.++- ..+.+|+ ....|+-++++...+-..|+..-++.|...+...+..+-..++..|..+|
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~l~~~y 140 (141)
T 2r80_A 64 EALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKY 140 (141)
T ss_dssp HHHHHHHHTTTCHHHHTHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666666654 3455555 34567888888888888887766677888888999999999999999998
No 12
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=26.43 E-value=19 Score=28.50 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=52.6
Q ss_pred chHHHHHHhcCc--hHHHHHh------hcCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~p--e~i~~l~------~~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|-.+++.++- ..+.+|+ ....|+=++++.+.+-..|+..-++.|...+...+..+-..++..|..+|
T Consensus 66 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 142 (143)
T 1out_A 66 GAIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVSAALADKY 142 (143)
T ss_dssp HHHHHHHHTTTCHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777765 3344444 34567888888888888887766667888788999999999999999988
No 13
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=26.24 E-value=19 Score=28.47 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=53.5
Q ss_pred chHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~p--e~i~~l~~------~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|-.+++.++- ..+.+|++ ...|+=++++.+.+-..|+..-++.|...+...+..+-..++..|..+|
T Consensus 67 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 143 (144)
T 1spg_A 67 AAVGKAVKSIDNLVGGLSQLSELHAFKLRVDPANFKILAHNIILVISMYFPGDFTPEVHLSVDKFLACLALALSEKY 143 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777765 34444443 4677888899888888888766677888888999999999999999988
No 14
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=26.07 E-value=74 Score=25.60 Aligned_cols=68 Identities=6% Similarity=0.049 Sum_probs=46.8
Q ss_pred HHHHHHhcCc-----hHHHHHhhcCC------------HHHHHHHHHHHHH-hhcCCCCCCceeEEEechhhHHHHHHHH
Q 024522 16 LLEYVKNVQP-----EFMELFVKRAP------------EQVVDAMRQTVTN-MIGTLPPQFFAVTVTTVAENLAQLMYSV 77 (266)
Q Consensus 16 L~~ylq~~~p-----e~i~~l~~~~s------------~ev~e~i~~~v~~-lLG~lp~~~f~v~i~ts~e~L~~Ll~s~ 77 (266)
|-..|.+++- ..+..+.+.|- |+-++.+...+-- ++..-....|...+...|..+-..++..
T Consensus 68 l~~~V~~Ldd~~~l~~~L~~LG~~H~~~~~~~~~~Gv~~~~f~~~g~all~~~l~~~~~~~~t~e~~~AW~~~~~~i~~~ 147 (161)
T 3mvc_A 68 MDDLIANLDSPSATVAGLREAGEKHVWPTRNQYGCPFHAHLLDQFATAMIERTLEWGEKKDRTETTQRGWTKIVLFVTEQ 147 (161)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTTCCSSTTTTSSCCCTHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 4445555554 34555666555 8889999888765 5544444566667788999999999999
Q ss_pred HhHhHh
Q 024522 78 MMTGYM 83 (266)
Q Consensus 78 mMtGYf 83 (266)
|-.||-
T Consensus 148 m~~gy~ 153 (161)
T 3mvc_A 148 LKEGFQ 153 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999995
No 15
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=25.22 E-value=9.3 Score=30.42 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=50.4
Q ss_pred chHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhHh
Q 024522 14 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 83 (266)
Q Consensus 14 n~L~~ylq~~~p--e~i~~l~~------~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGYf 83 (266)
+.|-.+++.++- ..+.+|++ ...|+=++++.+.+-..|...-++.|...+...+..+-..++.+|..+||
T Consensus 69 ~al~~~v~~ld~l~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 146 (146)
T 1out_B 69 GALDKAVKNMGNILATYKSLSETHANKLFVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146 (146)
T ss_dssp HTHHHHHHTTTCHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456666666665 33444443 34667788887777777766555567777788999999999999999996
No 16
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=25.01 E-value=25 Score=29.28 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=50.4
Q ss_pred chHHHHHHhcCc-----hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQP-----EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~p-----e~i~~l~~------~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|-.+++.++. ..+.+|++ ...|+-++++...+-..|...-++.|.-.+...|..+...++..|-.+|
T Consensus 90 ~al~~~v~~Ldd~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 169 (193)
T 2dc3_A 90 GALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAY 169 (193)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888776 45555554 3457778888777777766644456777777889999999999998777
Q ss_pred h
Q 024522 83 M 83 (266)
Q Consensus 83 f 83 (266)
-
T Consensus 170 ~ 170 (193)
T 2dc3_A 170 K 170 (193)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=24.53 E-value=20 Score=28.18 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=50.8
Q ss_pred chHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~p--e~i~~l~~------~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|-.+++.++- ..+.+|++ ...|+=++++...+-..|...-++.|...+...+..+-..++..|..+|
T Consensus 66 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 142 (143)
T 1xq5_A 66 GGIVDAVASIDDLNAGLLALSELHAFTLRVDPANFKILSHCILVLLAVKFPKDFTPEVHISYDKFFSALARALAEKY 142 (143)
T ss_dssp HHHHHHHHTTTCHHHHTHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666654 34455553 4566888888888777777765567887788899999999999999998
No 18
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=22.45 E-value=37 Score=19.87 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhHhHhhcc
Q 024522 69 NLAQLMYSVMMTGYMFKN 86 (266)
Q Consensus 69 ~L~~Ll~s~mMtGYfLrn 86 (266)
++|++||+.|+.-||=++
T Consensus 1 ~VGKiYAallI~d~~r~~ 18 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQN 18 (26)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 368999999999998544
No 19
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=21.36 E-value=56 Score=25.79 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=52.5
Q ss_pred chHHHHHHhcCc--hHHHHHhh------cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~p--e~i~~l~~------~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|-.+++.++- ..+.+|++ ...|+-++++.+.+-..|...-++.|+..+...+..+-..++..|..+|
T Consensus 70 ~al~~~v~~ld~~~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~v~~~l~~~y 146 (151)
T 1a6m_A 70 TALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 146 (151)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667776654 55666654 4567788888888877777765567877778899999999999999999
No 20
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=21.16 E-value=25 Score=27.02 Aligned_cols=67 Identities=6% Similarity=0.012 Sum_probs=46.6
Q ss_pred chHHHHHHhcCchH----HHHHhhcC-------CHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhH
Q 024522 14 DILLEYVKNVQPEF----MELFVKRA-------PEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 82 (266)
Q Consensus 14 n~L~~ylq~~~pe~----i~~l~~~~-------s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGY 82 (266)
+.|..++.. +++. +..|++.| .|+-++++..++-..|..++ +.|...+...|..+-..++.+|..+|
T Consensus 55 ~~l~~~v~~-~~~~l~~~l~~L~~~H~~~~~gV~p~~f~~~~~~Ll~~l~~lg-~~~t~e~~~AW~~~~~~~a~~l~~~y 132 (134)
T 1tu9_A 55 AGIMNLVMY-ARGMSDSKLRALGASHSRAALDIRPELYDLWLDALLMAVAEHD-RDCDAETRDAWRDVMGRGIAVIKSYY 132 (134)
T ss_dssp HHHHHHHHH-HTTCCTHHHHHHHHHTSTTTTCCCTTHHHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc-CcHhHHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556664 3333 66665554 46677777777777777733 46666677889999999999999888
No 21
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=20.48 E-value=39 Score=19.74 Aligned_cols=18 Identities=11% Similarity=0.410 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhHhHhhcc
Q 024522 69 NLAQLMYSVMMTGYMFKN 86 (266)
Q Consensus 69 ~L~~Ll~s~mMtGYfLrn 86 (266)
++|++||+.|+.-||=++
T Consensus 2 ~VGKiYA~llI~d~~r~~ 19 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQS 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 469999999999998665
No 22
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=20.46 E-value=32 Score=20.24 Aligned_cols=16 Identities=38% Similarity=0.760 Sum_probs=12.2
Q ss_pred cCHHHHHHHHHHHHHH
Q 024522 138 IDAKKYIEFLEAEIEE 153 (266)
Q Consensus 138 ~~a~~yi~~L~~~~~s 153 (266)
|+|.+|.++|..++..
T Consensus 7 iearkyleqlhrklkn 22 (26)
T 1xkm_B 7 IEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6899999988766543
Done!