Query 024522
Match_columns 266
No_of_seqs 168 out of 215
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 09:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024522.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024522hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wmub_ a.1.1.2 (B:) Hemoglobi 44.7 3.2 0.00023 31.2 1.0 55 29-83 92-146 (146)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 44.3 7.9 0.00058 25.3 2.9 21 139-159 30-50 (61)
3 d2pp4a1 a.277.1.1 (A:119-225) 39.7 4.7 0.00034 30.1 1.2 33 180-212 14-47 (107)
4 d2p6va1 a.277.1.1 (A:582-678) 33.7 11 0.00081 27.5 2.5 34 180-213 20-56 (97)
5 d2dn3b1 a.1.1.2 (B:2-146) Hemo 26.7 7.5 0.00055 29.0 0.4 51 33-83 95-145 (145)
6 d1gg2g_ a.137.3.1 (G:) Transdu 22.0 23 0.0017 22.9 2.1 32 144-175 2-36 (54)
7 d1outb_ a.1.1.2 (B:) Hemoglobi 21.6 5 0.00037 30.1 -1.6 50 34-83 97-146 (146)
8 d2jdia1 a.69.1.1 (A:380-510) F 20.7 70 0.0051 23.3 5.1 39 166-204 86-126 (131)
9 d1am9a_ a.38.1.1 (A:) SREBP-1a 19.6 42 0.0031 22.5 3.3 20 139-158 47-66 (80)
10 d1fx0a1 a.69.1.1 (A:373-501) F 19.4 78 0.0057 23.1 5.1 39 166-204 86-126 (129)
No 1
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise (Geochelone gigantea) [TaxId: 167804]}
Probab=44.74 E-value=3.2 Score=31.23 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=46.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhHh
Q 024522 29 ELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 83 (266)
Q Consensus 29 ~~l~~~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGYf 83 (266)
........|+-++.|.+.+-..|...-++.|...+...|.++-..++.+|..||.
T Consensus 92 ~h~~~~v~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 146 (146)
T d1wmub_ 92 HCEKLHVDPENFKLLGNILIIVLATHFPKEFTPASQAAWTKLVNAVAHALALGYH 146 (146)
T ss_dssp HHHTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 4555678899999999888888877777788888889999999999999999994
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.25 E-value=7.9 Score=25.27 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 024522 139 DAKKYIEFLEAEIEELNRQLG 159 (266)
Q Consensus 139 ~a~~yi~~L~~~~~sl~~q~~ 159 (266)
+|-+||.+|+.++..|+.+..
T Consensus 30 ~Ai~YI~~Lq~~~~~L~~e~~ 50 (61)
T d1uklc_ 30 KAIDYIKYLQQVNHKLRQENM 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999987643
No 3
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.69 E-value=4.7 Score=30.12 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=28.1
Q ss_pred HHHHhhhccCHHHHHHHHHHHHHhh-cccCCCCC
Q 024522 180 NLKELTSSAGEDVVLAMNTFIKRLL-AVSDPGQM 212 (266)
Q Consensus 180 ~L~~la~~~S~ev~~~i~~~v~~Ll-G~l~~~~~ 212 (266)
+|.+++...+||+-+-++..|++|+ |.++++.|
T Consensus 14 tLi~l~~~~~pe~~~~Vr~LV~~L~~~~i~~EeF 47 (107)
T d2pp4a1 14 TLQQYGNDISPEIGERVRTLVLGLVNSTLTIEEF 47 (107)
T ss_dssp HHHHHHHHHCSTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHhCCcCHHHH
Confidence 6788888999999999999999999 66766655
No 4
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.67 E-value=11 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHhhhc--cCHHHHHHHHHHHHHhh-cccCCCCCC
Q 024522 180 NLKELTSS--AGEDVVLAMNTFIKRLL-AVSDPGQMK 213 (266)
Q Consensus 180 ~L~~la~~--~S~ev~~~i~~~v~~Ll-G~l~~~~~~ 213 (266)
+|.+++.. .|||+-+-++..|++|+ |.++++.|.
T Consensus 20 tLi~l~s~~~~spe~~~~Vr~LV~~L~~~~i~~EEF~ 56 (97)
T d2p6va1 20 TLIKLASSGKQSTETAANVKELVQNLLDGKIEAEDFT 56 (97)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHhCCcCHHHHH
Confidence 67788665 88999999999999999 667766663
No 5
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.67 E-value=7.5 Score=29.03 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=42.8
Q ss_pred hcCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhHh
Q 024522 33 KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 83 (266)
Q Consensus 33 ~~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGYf 83 (266)
....|+-++.|.+.+-..|...-++.|...+...|+++-.+++.+|-.||.
T Consensus 95 ~gv~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 145 (145)
T d2dn3b1 95 LHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 145 (145)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred cCCChhHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 357888888888888887777666778887889999999999999999994
No 6
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.97 E-value=23 Score=22.86 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhh---hccCCchhHHHHHhh
Q 024522 144 IEFLEAEIEELNRQLGR---KATNGQNELLEYLKT 175 (266)
Q Consensus 144 i~~L~~~~~sl~~q~~~---~~~~~~n~Ll~Yl~s 175 (266)
|.+++.++++|+.++.. +.+..-.+|.+|...
T Consensus 2 i~q~rk~VeqLr~e~~~~RikvS~aa~~l~~y~e~ 36 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEA 36 (54)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh
Confidence 56788899999998753 234456778888754
No 7
>d1outb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=21.60 E-value=5 Score=30.12 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCceeEEEechhhHHHHHHHHHhHhHh
Q 024522 34 RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 83 (266)
Q Consensus 34 ~~s~ev~e~i~~~v~~lLG~lp~~~f~v~i~ts~e~L~~Ll~s~mMtGYf 83 (266)
...|+-++.|...+-..|...-++.|...+...|+++-.+++.+|-.+||
T Consensus 97 ~v~~~~f~~~~~~ll~~l~~~lg~~fT~e~~~AW~k~~~~v~~~l~~~Y~ 146 (146)
T d1outb_ 97 FVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146 (146)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCChHHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46778777777766666666555678888889999999999999999997
No 8
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.69 E-value=70 Score=23.34 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=32.3
Q ss_pred chhHHHHHhhcCHHHHHHhhh--ccCHHHHHHHHHHHHHhh
Q 024522 166 QNELLEYLKTLEPQNLKELTS--SAGEDVVLAMNTFIKRLL 204 (266)
Q Consensus 166 ~n~Ll~Yl~sl~pe~L~~la~--~~S~ev~~~i~~~v~~Ll 204 (266)
.+.|++|+++-.|+.+..+.+ ..+.|..+.|+..+....
T Consensus 86 e~~ll~~l~~~~~~~l~~I~~~~~l~de~~~~L~~ai~~f~ 126 (131)
T d2jdia1 86 ENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFL 126 (131)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999975 467888888887777654
No 9
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.59 E-value=42 Score=22.47 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 024522 139 DAKKYIEFLEAEIEELNRQL 158 (266)
Q Consensus 139 ~a~~yi~~L~~~~~sl~~q~ 158 (266)
.|.+||..|+.+...|+.+.
T Consensus 47 ~a~~yI~~L~~~~~~L~~e~ 66 (80)
T d1am9a_ 47 KAIDYIRFLQHSNQKLKQEN 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998888764
No 10
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=19.37 E-value=78 Score=23.07 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=32.5
Q ss_pred chhHHHHHhhcCHHHHHHhhhc--cCHHHHHHHHHHHHHhh
Q 024522 166 QNELLEYLKTLEPQNLKELTSS--AGEDVVLAMNTFIKRLL 204 (266)
Q Consensus 166 ~n~Ll~Yl~sl~pe~L~~la~~--~S~ev~~~i~~~v~~Ll 204 (266)
.+.|++|+++-.|+.+..+.+. .+.++...+...+....
T Consensus 86 e~~ll~~l~~~~~~il~~I~~~~~ltde~~~~L~~~i~~f~ 126 (129)
T d1fx0a1 86 LVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQM 126 (129)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999874 58888888887776654
Done!