BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024523
         (266 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Yersinia Pestis Co92
 pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Yersinia Pestis Co92
          Length = 346

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 124/178 (69%), Gaps = 1/178 (0%)

Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60

Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N
Sbjct: 121 QFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFN 177


>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
           Subtilis
 pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
           Subtilis
          Length = 388

 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/166 (55%), Positives = 118/166 (71%), Gaps = 2/166 (1%)

Query: 76  SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
           ++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D  +L K  
Sbjct: 33  TMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNI 92

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
           R  AA+YLA G+D  KA++F+QS V AH +  W++     IG L +M QFK+KS   G E
Sbjct: 93  RNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNE 150

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
            V   LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N
Sbjct: 151 AVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFN 196


>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
           Tryptophanyl-Trna Synthetase Complexed With
           Tryptophanyl-5'amp
 pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Atp In A Closed, Pre-Transition State
           Conformation
 pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Atp And Tryptophanamide In A
           Pre-Transition State Conformation
 pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Atp In An Open Conformation
 pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Atp In An Open Conformation
 pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Atp In An Open Conformation
 pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Atp In An Open Conformation
 pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Atp In An Open Conformation
 pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Atp In An Open Conformation
 pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Tryptophan In An Open Conformation
 pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Tryptophan In An Open Conformation
 pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Tryptophan In An Open Conformation
 pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Tryptophan In An Open Conformation
 pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Tryptophan In An Open Conformation
 pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
           Complexed With Tryptophan In An Open Conformation
 pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
           Trna Synthetase In Complex With Adenosine Tetraphosphate
          Length = 328

 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 116/163 (71%), Gaps = 2/163 (1%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 162


>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Thermus Thermophilus
 pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Thermus Thermophilus
          Length = 337

 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 117/167 (70%), Gaps = 6/167 (3%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLP--YDTQQLSKA 134
           KR++SG+QP+G IH+GNYLGAIK W+A+      +  F IVD HA+T P  YD   L++ 
Sbjct: 2   KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           T E A + +A G+D  K ++FVQSHV  H EL W+ ++ TP+G L +M QFK+K+ K   
Sbjct: 62  TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQ-- 119

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
           E V   LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFN 166


>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
           Tryptophanyl-Trna Synthetase Complexed With
           Tryptophanyl-5'amp
 pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
           Tryptophanyl-Trna Synthetase Complexed With
           Tryptophanyl-5'amp
          Length = 328

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 113/163 (69%), Gaps = 2/163 (1%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W L     IG L +  QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 162


>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
 pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
           Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
           Amp, And Inorganic Phosphate
          Length = 326

 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 113/163 (69%), Gaps = 2/163 (1%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W L     IG L +  QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 162


>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
           Synthetase: Domain Movements Fragment The Adenine
           Nucleotide Binding Site.
 pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
           Synthetase: Domain Movements Fragment The Adenine
           Nucleotide Binding Site.
 pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
           Synthetase: Domain Movements Fragment The Adenine
           Nucleotide Binding Site.
 pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
           Synthetase: Domain Movements Fragment The Adenine
           Nucleotide Binding Site.
 pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
           Synthetase: Domain Movements Fragment The Adenine
           Nucleotide Binding Site.
 pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
           Synthetase: Domain Movements Fragment The Adenine
           Nucleotide Binding Site
          Length = 326

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/163 (53%), Positives = 113/163 (69%), Gaps = 2/163 (1%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  A      
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGA--AAAA 119

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 162


>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Vibrio Cholerae With An Endogenous Tryptophan
          Length = 341

 Score =  173 bits (438), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 118/169 (69%), Gaps = 1/169 (0%)

Query: 73  SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
           S++  K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L 
Sbjct: 1   SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60

Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
           +AT +  AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS + 
Sbjct: 61  EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARY 120

Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             + V   L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N
Sbjct: 121 AND-VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN 168


>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
           Partially-Assembled State Similar To Those Observed In
           Molecular Simulations
          Length = 287

 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 107/161 (66%), Gaps = 12/161 (7%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M Q            V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 109

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER
Sbjct: 110 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAER 150


>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
           Partially-Assembled State Similar To Those Observed In
           Molecular Simulations
          Length = 297

 Score =  164 bits (415), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 107/163 (65%), Gaps = 14/163 (8%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M              V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM--------------VS 107

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 108 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 150


>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
           Partially-Assembled State Similar To Those Observed In
           Molecular Simulations
          Length = 292

 Score =  154 bits (388), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 104/163 (63%), Gaps = 17/163 (10%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+Q      +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M Q            V 
Sbjct: 57  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 147


>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
           Partially-Assembled State Similar To Those Observed In
           Molecular Simulations
          Length = 300

 Score =  154 bits (388), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 104/163 (63%), Gaps = 17/163 (10%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+Q      +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M Q            V 
Sbjct: 57  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 147


>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
           Partially-Assembled State Similar To Those Observed In
           Molecular Simulations
          Length = 293

 Score =  154 bits (388), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 104/163 (63%), Gaps = 17/163 (10%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+Q      +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M Q            V 
Sbjct: 57  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 147


>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
           Partially-Assembled State Similar To Those Observed In
           Molecular Simulations
          Length = 280

 Score =  154 bits (388), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 104/163 (63%), Gaps = 17/163 (10%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+Q      +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M Q            V 
Sbjct: 57  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 147


>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Mycoplasma Pneumoniae
 pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Mycoplasma Pneumoniae
 pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Mycoplasma Pneumoniae
 pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Mycoplasma Pneumoniae
          Length = 348

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           KR ++G+Q +G  HLGNYLG +++ I LQ   +   F+ DLH+IT+ +  Q L +   + 
Sbjct: 5   KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDL 64

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G 193
               LA G+D  KA +F+QS +  H  + +L+   + +G L +M QFK K  +      G
Sbjct: 65  VRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNG 124

Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
             N+   LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 125 TLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRI 171


>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
           6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
           Thermotoga Maritima At 2.50 A Resolution
          Length = 340

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 108/165 (65%), Gaps = 3/165 (1%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD-TQQLSKATRE 137
           RI+SG++PTG +H+G+ +GA++NW+ LQ    E  +F+ D HA+T  YD   +L + TR+
Sbjct: 14  RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRD 73

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               +LACGID  K+ +FVQS V+ H EL  L S    +  L ++  +KE   +   +++
Sbjct: 74  LVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDL 133

Query: 198 GVA-LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             A  L YPVL A+DIL+Y+++ VPVGEDQ  H+ELTRE+A R N
Sbjct: 134 STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN 178


>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
           Northeast Structural Genomics Consortium Target Or52
 pdb|3U1V|B Chain B, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
           Northeast Structural Genomics Consortium Target Or52
 pdb|3U1V|C Chain C, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
           Northeast Structural Genomics Consortium Target Or52
 pdb|3U1V|D Chain D, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
           Northeast Structural Genomics Consortium Target Or52
          Length = 338

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 100/163 (61%), Gaps = 2/163 (1%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I S + PTG I +G Y+GA++ ++ LQ+ Y   F I D  AIT+  D  +L +  R  
Sbjct: 2   KTIFSAICPTGVITIGRYIGALRQFVELQHEYNCYFCIADQSAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+ S V AH +  W L     IG L +   FKE S  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELS--AGKEAVS 119

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLT+P + A+ ILLY +D VPVGE  KQ  ELTR+LAER N
Sbjct: 120 AGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFN 162


>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Campylobacter Jejuni
 pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Campylobacter Jejuni
 pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Campylobacter Jejuni Complexed With Adp And Tryptophane
 pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Campylobacter Jejuni Complexed With Adp And Tryptophane
          Length = 322

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 2/162 (1%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139
           R+++G+QP+G +H+GNY GAIK  +  Q   +   FI + HA T   D ++L + + + A
Sbjct: 5   RVLTGLQPSGDLHIGNYFGAIKQXVDAQEKSQXFXFIANYHAXTSSQDGEKLKQNSLKAA 64

Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 199
           A +L+ GID  K+  ++QS V+   EL W+LS  TP G L +   +K+K   A G +   
Sbjct: 65  AAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKV--AKGLSASH 122

Query: 200 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
            L +YPVL A+DILL+ +  VPVG+DQ QH+E+ R++A +VN
Sbjct: 123 GLFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVN 164


>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
 pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
 pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
          Length = 331

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 2/166 (1%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYD-TQQLSKATR 136
           + R+++G +PTG++HLG+  G+++N + LQ+  E    + D+ A+T  +D  +Q+ +   
Sbjct: 2   RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVL 61

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGE 195
             A  YLA G+D  K +  VQS V    EL     +   +  L +    K E + K  GE
Sbjct: 62  AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 121

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
            V      YPV  A+DI  + +  VPVG+DQ   LE TRE+  R N
Sbjct: 122 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFN 167


>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
           Deinococcus Radiodurans In Complex With L-Trp
 pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
           Deinococcus Radiodurans In Complex With L-Trp
 pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
           Deinococcus Radiodurans In Complex With L-Trp
 pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
           Deinococcus Radiodurans In Complex With 5-Hydroxy
           Tryptophan.
 pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
           Deinococcus Radiodurans In Complex With 5-Hydroxy
           Tryptophan.
 pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
           Deinococcus Radiodurans In Complex With 5-Hydroxy
           Tryptophan.
 pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
           Deinococcus Radiodurans In Complex With Atp.
 pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
           Deinococcus Radiodurans In Complex With Atp.
 pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
           Deinococcus Radiodurans In Complex With Atp
          Length = 351

 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 2/163 (1%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYD-TQQLSKATRETA 139
           +++G +PTG++HLG+  G+++N + LQ+  E    + D+ A+T  +D  +Q+ +     A
Sbjct: 25  VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVA 84

Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGENVG 198
             YLA G+D  K +  VQS V    EL     +   +  L +    K E + K  GE V 
Sbjct: 85  LDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVP 144

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
                YPV  A+DI  + +  VPVG+DQ   LE TRE+  R N
Sbjct: 145 AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFN 187


>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
           With L-Tyrosine From Archaeoglobus Fulgidus
 pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
           With L-Tyrosine From Archaeoglobus Fulgidus
          Length = 323

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT-QQLSKAT 135
           K R   G +P+G IHLG+ +  ++  + LQ + +E +  + D+HA      T +++++  
Sbjct: 32  KPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGG 194
                +++A G+D S+A   + S  +   + +  +     I  LN+  +   E S +   
Sbjct: 91  DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRK-- 148

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235
           E+  V+ + YP++ A DI     D    G DQ++   L RE
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARE 189


>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
           Complexed With Trna(Tyr) And L-Tyrosine
 pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
           Synthetase
 pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
           Synthetase
          Length = 306

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 13/158 (8%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +DI     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAREL 183


>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Hyperthermophilic Archaeon, Aeropyrum Pernix K1
 pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
           Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
           With Tryptophan
          Length = 372

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 32/185 (17%)

Query: 72  ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-NSYETLFFIVDLHAITLPY--DT 128
           A +   +  +++G  P+G  H G+ L  +   I LQ N ++    I D  A  +      
Sbjct: 64  AKARGERVAVLTGFMPSGKFHFGHKL-TVDQLIYLQKNGFKVFVAIADAEAFAVRRIGRE 122

Query: 129 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 188
           + +  A  E  A  +A G+D      + Q+            +  TP     ++IQ    
Sbjct: 123 EAVRIAVEEYIANMIALGLDPKDTEFYFQT------------NRGTP---YFRLIQLFSG 167

Query: 189 SHKAGGENVGVALLTYPVLMAS-----DILLYQSD--------FVPVGEDQKQHLELTRE 235
              A         LT   +MAS     DIL  Q D         VPVG DQ  HL LTR+
Sbjct: 168 KVTAAEMEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRD 227

Query: 236 LAERV 240
           LA+R+
Sbjct: 228 LADRM 232


>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
           With P-(2- Tetrazolyl)-Phenylalanine
 pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
           With P-(2- Tetrazolyl)-Phenylalanine
          Length = 314

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIILADLHAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S     + +   ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFMLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  + I     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLAREL 183


>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
           Sythetase In Complex With P-Bromo-L-Phenylalanine
          Length = 314

 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145

Query: 199 VALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 236
           VA + YP+ M  + L Y+   V VG  E +K H+ L REL
Sbjct: 146 VAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183


>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
           Synthetase In Complex With L-3-(2-Napthyl)alanine
          Length = 314

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D V  G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNPAHYQGVDVVVGGMEQRKIHMLAREL 183


>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
           Synthetase Specific For O-Methyl-Tyrosine
 pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
           Synthetase Specific For O-Methyl-Tyrosine
          Length = 312

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSTFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  + I     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNAIHYPGVDVAVGGMEQRKIHMLAREL 183


>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
           In Complex With P-Acetylphenylalanine
          Length = 314

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNGCHYRGVDVAVGGMEQRKIHMLAREL 183


>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
           Synthetase
          Length = 306

 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA 121
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA
Sbjct: 33  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHA 70


>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
           Polysubstrate Specificity
 pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
           Polysubstrate Specificity
          Length = 312

 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 21/162 (12%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIVLADLHAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-------G 194
           + A G+   KA     S         W+L     +      ++   K  +          
Sbjct: 93  FEAMGL---KAKYVYGSE--------WMLDKDYTLNVYRLALKTTLKRARRSMELIARED 141

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           EN  VA + YP++  +       D    G +Q++   L REL
Sbjct: 142 ENPKVAEVIYPIMQVNGAHYLGVDVAVGGMEQRKIHMLAREL 183


>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
           Phenylalanyl-Trna Synthetase
 pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
           Phenylalanyl-Trna Synthetase
          Length = 314

 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
           +K  + G +P+G IHLG+YL  IK  I LQN+ ++ +  + DL A +    +  ++ K  
Sbjct: 28  EKSAIIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLFAYLNQKGELDEIRKIG 86

Query: 136 RETAAIYLACGIDNSKASVFVQSHV--RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
                ++ A G+      V+  S +  + +   ++ L+  T +    + ++   +     
Sbjct: 87  DYNKKVFEAMGL--KAKYVYGSSFMLDKDYTLNVYRLALKTTLKRARRSMELIARED--- 141

Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 236
            EN  VA + YP+ M  + L Y+   V VG  E +K H+ L REL
Sbjct: 142 -ENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183


>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
           Tyrosinol, Triclinic Crystal Form 1
 pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
           Tyrosinol, Triclinic Crystal Form 1
 pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
           Tyrosinol, Triclinic Crystal Form 1
 pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
           Tyrosinol, Triclinic Crystal Form 1
          Length = 690

 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 11/169 (6%)

Query: 80  RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSK---AT 135
           R   G +P+G +H+      A+          E +F++ D  A+       +L K     
Sbjct: 42  RCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVG 101

Query: 136 RETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           R    ++ A G+D  K      S  + +H +  W +     IG  N + + K K     G
Sbjct: 102 RYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRM--VLDIGRQNTIARIK-KCCTIMG 158

Query: 195 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           +  G    A + YP++   DI   ++D   +G DQ++   L RE  + +
Sbjct: 159 KTEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLI 207


>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
          Length = 314

 Score = 38.5 bits (88), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 13/158 (8%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ + ++ DL A +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIYLADLAAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMEVNGWHYSGVDVAVGGMEQRKIHMLAREL 183


>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
           Archeal Tyrosyl-Trna Synthetase
          Length = 314

 Score = 38.1 bits (87), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DL A +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKV 92

Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLAREL 183


>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
           (Pftyrrs)in Complex With Adenylate Analog
 pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
           (Pftyrrs)in Complex With Adenylate Analog
          Length = 373

 Score = 37.0 bits (84), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 18/175 (10%)

Query: 77  VKKRIV--SGVQPTGSIHLGNYLGAIKNWIALQ---NSYETLFFIVDLHA---ITLPYDT 128
           +K++++   G +P+G +H+    G +K+ I  +   N    +F+I D  A     +  D 
Sbjct: 53  LKRKLICYDGFEPSGRMHIAQ--GLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDL 110

Query: 129 QQLSKATRETAAIYLACGIDNSK-----ASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
           +++ K       ++ +CG++        AS  +      +  L+  +S +  I  + + +
Sbjct: 111 KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCL 170

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238
           +   +S   G EN    +L YP +  +DI     D   +G DQ++   L RE  +
Sbjct: 171 KIMGRSE--GEENYCSQIL-YPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCD 222


>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
           Fisetin, Cubic Crystal Form
 pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
           Fisetin, Cubic Crystal Form
 pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
           Tyrosinol, Cubic Crystal Form
 pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
           Tyrosinol, Cubic Crystal Form
          Length = 690

 Score = 37.0 bits (84), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 80  RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSK---AT 135
           R   G +P+G  H+      A+          E +F++ D  A+       +L K     
Sbjct: 42  RCYDGFEPSGRXHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALXNDKVGGELEKIRIVG 101

Query: 136 RETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           R    ++ A G D  K      S  + +H +  W       IG  N + + K K     G
Sbjct: 102 RYLIEVWKAAGXDXDKVLFLWSSEEITSHADTYW--RXVLDIGRQNTIARIK-KCCTIXG 158

Query: 195 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235
           +  G    A + YP+    DI   ++D   +G DQ++   L RE
Sbjct: 159 KTEGTLTAAQVLYPLXQCCDIFFLKADICQLGLDQRKVNXLARE 202


>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
           Polyphaga Mimivirus Complexed With Tyrosynol
 pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
           Polyphaga Mimivirus Complexed With Tyrosynol
          Length = 348

 Score = 35.4 bits (80), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 83  SGVQPTGSIHLGNYLGAIKNW-IALQNSYETLFFIVDLHA---ITLPYDTQQLSKATRET 138
           +G +P+G IH+   L  + N    ++   + + +I D  A   + +  D  ++ +  R  
Sbjct: 45  NGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYF 104

Query: 139 AAIYLACGI--DNSK---ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
             ++ ACGI  D ++   AS F+ S+  +++E M  ++  + I  + +  Q   ++    
Sbjct: 105 IEVFKACGINLDGTRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRNE--- 160

Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVGED 225
            + +  + + YP + A+D+     + VP G D
Sbjct: 161 SDCLKASQIFYPCMQAADVF----ELVPEGID 188


>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
 pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
          Length = 451

 Score = 33.5 bits (75), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 25/133 (18%)

Query: 81  IVSGVQPT-GSIHLGNYL---------GAIKNWIALQNSYETLFFIVDLHAITLPYDTQQ 130
           I +G  P+ G++HLG+ L          A K ++ +Q + +  F    L   +L Y   +
Sbjct: 94  IYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKF----LRNRSLSY--AE 147

Query: 131 LSKATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKE 187
           +   TRE     +ACG D  K  +F+ S    ++       L+    PI  L     F  
Sbjct: 148 VDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSN 207

Query: 188 KSHKAGGENVGVA 200
            +      NVG A
Sbjct: 208 DA------NVGYA 214


>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
           Aeropyrum Pernix
          Length = 364

 Score = 31.6 bits (70), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 20/191 (10%)

Query: 62  VSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLG--NYLGAIKNWIALQNSYETL-----F 114
           V+  E    +AS + +K  I  G +P+G  H+G   ++  +K+ +     +  L      
Sbjct: 21  VTEEELKGLLASGARIKGYI--GYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHA 78

Query: 115 FIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLL---- 170
           +I D     L  D   +  A R    +  A G+   +   FV +   A  +  W L    
Sbjct: 79  YIND----KLGGDMDLIRAAARIVRRVMEAAGVPVERVR-FVDAEELASDKDYWGLVIRV 133

Query: 171 SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230
           +    +  + + +       +A    V  + L YP++  SDI     D    G DQ++  
Sbjct: 134 AKRASLARVRRALTIM--GRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAH 191

Query: 231 ELTRELAERVN 241
            L R++AE++ 
Sbjct: 192 MLARDVAEKLG 202


>pdb|1R5S|A Chain A, Connexin 43 Carboxyl Terminal Domain
          Length = 132

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 23/110 (20%)

Query: 30  GLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTG 89
           G PSK C +P         A  NGC          S PTAP++  S    ++V+G +   
Sbjct: 4   GSPSKDCGSP-------KYAYFNGC----------SSPTAPLSPMSPPGYKLVTGDRNNS 46

Query: 90  SIHLGNYLGAIKNWI---ALQNSY-ETLFFIVDLHA--ITLPYDTQQLSK 133
           S    N   + +NW    A QN   +    I + HA     P D Q   K
Sbjct: 47  SCRNYNKQASEQNWANYSAEQNRMGQAGSTISNSHAQPFDFPDDNQNAKK 96


>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
           With L-Tyrosine From Pyrococcus Horikoshii
 pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
           With L-Tyrosine From Pyrococcus Horikoshii
          Length = 375

 Score = 27.3 bits (59), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 80/203 (39%), Gaps = 25/203 (12%)

Query: 60  CNVSLSEPTAPVASSSSVKKRI--------VSGVQPTGSIHLGNYLGAIKNWIALQNS-Y 110
            N+ L +PT  V +  +++             G + +G IHLG  L A       Q +  
Sbjct: 7   INLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGI 66

Query: 111 ETLFFIVDLHAITLPYDTQQLS---KATRETAAIYLACGIDNS---------KASVFVQS 158
           +T  F+ D H+    +   +L    +  +E A  Y   G++ S         K    + S
Sbjct: 67  KTRVFLADWHS----WINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLAS 122

Query: 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSD 218
            +    +    +   +    L+++++      +  GE +  A L YP++  +DI      
Sbjct: 123 EILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFYQGVT 182

Query: 219 FVPVGEDQKQHLELTRELAERVN 241
               G DQ++   +  E+A+++ 
Sbjct: 183 IAHAGMDQRKAHVIAIEVAQKLR 205


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,879,466
Number of Sequences: 62578
Number of extensions: 258158
Number of successful extensions: 705
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 42
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)