Query 024523
Match_columns 266
No_of_seqs 179 out of 1292
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:13:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 3.5E-61 7.6E-66 459.9 21.5 209 57-265 25-233 (389)
2 COG0180 TrpS Tryptophanyl-tRNA 100.0 4.1E-57 8.9E-62 421.1 16.3 170 76-246 3-175 (314)
3 PRK12284 tryptophanyl-tRNA syn 100.0 6.7E-56 1.5E-60 427.2 18.4 169 78-246 2-178 (431)
4 KOG2713 Mitochondrial tryptoph 100.0 7.3E-56 1.6E-60 404.7 15.7 171 78-248 13-187 (347)
5 PRK12556 tryptophanyl-tRNA syn 100.0 2E-55 4.4E-60 413.8 18.1 169 78-246 3-179 (332)
6 PRK12283 tryptophanyl-tRNA syn 100.0 5.2E-55 1.1E-59 417.8 18.9 168 79-246 3-172 (398)
7 PRK00927 tryptophanyl-tRNA syn 100.0 3.8E-54 8.3E-59 404.9 16.9 166 79-245 2-167 (333)
8 TIGR00233 trpS tryptophanyl-tR 100.0 3.6E-53 7.8E-58 397.8 16.6 166 77-245 1-168 (328)
9 PRK12282 tryptophanyl-tRNA syn 100.0 3.4E-52 7.4E-57 392.0 17.9 169 78-246 2-172 (333)
10 cd00806 TrpRS_core catalytic c 100.0 1.8E-51 3.9E-56 378.6 16.3 164 80-245 1-166 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 3.5E-49 7.6E-54 375.9 17.5 177 76-261 64-263 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 1.3E-46 2.9E-51 353.2 15.2 179 76-260 28-225 (329)
13 cd00395 Tyr_Trp_RS_core cataly 100.0 3.7E-46 8.1E-51 342.3 17.4 176 80-260 1-208 (273)
14 PTZ00126 tyrosyl-tRNA syntheta 100.0 2.2E-45 4.9E-50 351.4 16.3 183 76-261 64-269 (383)
15 cd00805 TyrRS_core catalytic c 100.0 2.2E-45 4.7E-50 336.2 15.3 176 79-259 1-204 (269)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 7E-45 1.5E-49 334.3 15.9 186 75-261 2-210 (292)
17 PTZ00348 tyrosyl-tRNA syntheta 100.0 7.8E-42 1.7E-46 345.5 16.3 184 76-261 30-234 (682)
18 PRK05912 tyrosyl-tRNA syntheta 100.0 1.7E-41 3.8E-46 326.9 16.6 184 76-263 31-245 (408)
19 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 2.7E-40 5.9E-45 315.8 15.8 180 78-263 30-234 (377)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 9.3E-40 2E-44 315.1 15.8 184 76-264 31-244 (410)
21 PLN02486 aminoacyl-tRNA ligase 100.0 1.1E-38 2.4E-43 305.2 16.4 178 76-261 71-277 (383)
22 COG0162 TyrS Tyrosyl-tRNA synt 100.0 5.9E-34 1.3E-38 273.6 16.2 185 78-265 32-239 (401)
23 KOG2145 Cytoplasmic tryptophan 100.0 3.1E-29 6.8E-34 230.8 6.8 160 76-243 83-259 (397)
24 KOG2144 Tyrosyl-tRNA synthetas 99.9 3.4E-26 7.3E-31 210.5 7.1 162 77-243 33-204 (360)
25 PTZ00348 tyrosyl-tRNA syntheta 99.9 1.1E-23 2.3E-28 213.9 11.5 121 109-239 407-535 (682)
26 KOG2623 Tyrosyl-tRNA synthetas 99.9 1.3E-21 2.9E-26 185.9 13.3 186 78-264 63-287 (467)
27 cd00808 GluRS_core catalytic c 99.3 1.6E-11 3.6E-16 111.5 9.7 144 86-258 9-169 (239)
28 cd00802 class_I_aaRS_core cata 99.3 2.5E-11 5.4E-16 100.5 9.7 38 204-241 78-118 (143)
29 cd00418 GlxRS_core catalytic c 98.0 4E-05 8.7E-10 69.6 10.1 142 86-258 9-160 (230)
30 cd00674 LysRS_core_class_I cat 97.9 0.00016 3.5E-09 69.4 13.4 81 78-161 20-130 (353)
31 PRK00750 lysK lysyl-tRNA synth 97.7 0.00045 9.8E-09 69.2 12.2 79 79-160 25-135 (510)
32 PRK05710 glutamyl-Q tRNA(Asp) 97.6 0.0001 2.2E-09 69.4 6.3 90 86-182 13-111 (299)
33 cd02156 nt_trans nucleotidyl t 97.3 0.00077 1.7E-08 53.0 6.9 64 81-148 2-65 (105)
34 cd00671 ArgRS_core catalytic c 97.0 0.0029 6.3E-08 56.0 8.2 152 82-243 6-186 (212)
35 cd00807 GlnRS_core catalytic c 96.9 0.0033 7.1E-08 57.6 7.3 149 86-257 9-170 (238)
36 cd09287 GluRS_non_core catalyt 96.8 0.0037 8.1E-08 57.3 7.4 139 83-242 6-149 (240)
37 PF00749 tRNA-synt_1c: tRNA sy 96.7 0.0055 1.2E-07 57.8 7.5 166 86-258 9-250 (314)
38 PLN03233 putative glutamate-tR 96.6 0.0074 1.6E-07 60.9 7.8 92 81-180 12-114 (523)
39 TIGR03838 queuosine_YadB gluta 96.5 0.0096 2.1E-07 55.5 8.0 90 86-182 8-106 (272)
40 PRK14895 gltX glutamyl-tRNA sy 96.5 0.014 3E-07 58.9 9.1 95 80-182 4-110 (513)
41 PRK12410 glutamylglutaminyl-tR 96.4 0.0094 2E-07 58.9 7.5 89 86-182 7-104 (433)
42 PRK04156 gltX glutamyl-tRNA sy 96.4 0.022 4.9E-07 58.0 10.2 159 79-243 102-322 (567)
43 PTZ00402 glutamyl-tRNA synthet 96.3 0.018 3.8E-07 59.1 8.8 93 81-180 53-156 (601)
44 TIGR00463 gltX_arch glutamyl-t 96.3 0.014 3E-07 59.4 8.0 93 80-180 93-196 (560)
45 COG0008 GlnS Glutamyl- and glu 96.2 0.015 3.1E-07 58.2 7.5 171 81-258 10-257 (472)
46 PRK05347 glutaminyl-tRNA synth 96.1 0.025 5.4E-07 57.5 9.0 93 81-180 30-133 (554)
47 TIGR00467 lysS_arch lysyl-tRNA 96.1 0.021 4.6E-07 57.6 8.3 80 78-160 19-128 (515)
48 PTZ00437 glutaminyl-tRNA synth 96.0 0.021 4.6E-07 58.2 7.8 94 79-180 52-154 (574)
49 PRK12558 glutamyl-tRNA synthet 96.0 0.024 5.1E-07 56.3 7.8 88 86-181 10-106 (445)
50 TIGR00440 glnS glutaminyl-tRNA 95.9 0.035 7.6E-07 56.1 8.7 88 86-180 8-104 (522)
51 TIGR00464 gltX_bact glutamyl-t 95.9 0.029 6.2E-07 55.9 7.9 89 86-181 9-106 (470)
52 PRK00133 metG methionyl-tRNA s 95.9 0.025 5.4E-07 58.5 7.6 86 77-165 2-101 (673)
53 PLN02907 glutamate-tRNA ligase 95.7 0.034 7.4E-07 58.2 7.9 156 80-243 213-432 (722)
54 PLN02859 glutamine-tRNA ligase 95.6 0.041 8.9E-07 58.0 8.0 89 84-180 270-367 (788)
55 PRK14703 glutaminyl-tRNA synth 95.5 0.057 1.2E-06 57.0 8.7 93 81-180 32-135 (771)
56 COG0143 MetG Methionyl-tRNA sy 95.5 0.04 8.7E-07 56.1 7.4 78 86-166 15-105 (558)
57 PRK01611 argS arginyl-tRNA syn 95.4 0.067 1.5E-06 53.5 8.7 167 81-258 116-329 (507)
58 PLN02627 glutamyl-tRNA synthet 95.4 0.047 1E-06 55.4 7.5 97 79-181 46-158 (535)
59 PLN02224 methionine-tRNA ligas 94.9 0.13 2.8E-06 53.1 9.2 73 78-150 70-156 (616)
60 PRK01406 gltX glutamyl-tRNA sy 94.9 0.094 2E-06 52.4 7.9 168 86-259 12-259 (476)
61 PF09334 tRNA-synt_1g: tRNA sy 94.7 0.083 1.8E-06 51.3 6.7 77 86-165 9-98 (391)
62 cd00672 CysRS_core catalytic c 94.3 1 2.2E-05 40.4 12.3 72 78-149 21-105 (213)
63 PRK00260 cysS cysteinyl-tRNA s 94.1 0.2 4.3E-06 49.7 8.0 73 78-150 23-110 (463)
64 PRK12268 methionyl-tRNA synthe 94.1 0.15 3.1E-06 51.3 7.2 72 80-151 5-92 (556)
65 PF01921 tRNA-synt_1f: tRNA sy 94.0 0.075 1.6E-06 51.5 4.8 82 76-160 22-134 (360)
66 cd00812 LeuRS_core catalytic c 93.6 0.13 2.8E-06 48.2 5.6 80 87-167 11-103 (314)
67 PRK00390 leuS leucyl-tRNA synt 93.5 0.23 4.9E-06 52.7 7.7 72 78-150 33-119 (805)
68 PLN02610 probable methionyl-tR 93.4 0.15 3.2E-06 54.2 6.1 87 78-167 18-119 (801)
69 TIGR00398 metG methionyl-tRNA 93.1 0.17 3.6E-06 50.6 5.7 65 87-151 10-87 (530)
70 PRK11893 methionyl-tRNA synthe 92.8 0.17 3.6E-06 50.1 5.1 65 86-150 11-88 (511)
71 cd00814 MetRS_core catalytic c 92.3 0.25 5.4E-06 46.3 5.4 65 87-151 11-88 (319)
72 cd00668 Ile_Leu_Val_MetRS_core 92.2 0.17 3.8E-06 47.0 4.2 64 87-150 11-100 (312)
73 PRK12267 methionyl-tRNA synthe 92.1 0.34 7.3E-06 49.9 6.4 64 87-150 15-91 (648)
74 cd00818 IleRS_core catalytic c 91.6 0.38 8.3E-06 45.6 5.8 36 87-122 12-52 (338)
75 COG1384 LysS Lysyl-tRNA synthe 91.4 0.24 5.3E-06 50.0 4.4 81 77-160 19-131 (521)
76 cd00817 ValRS_core catalytic c 91.0 0.5 1.1E-05 45.6 6.0 64 87-150 12-104 (382)
77 PRK14536 cysS cysteinyl-tRNA s 90.6 1.6 3.5E-05 44.0 9.4 74 76-149 21-118 (490)
78 TIGR00396 leuS_bact leucyl-tRN 90.3 0.66 1.4E-05 49.5 6.7 73 78-150 30-116 (842)
79 COG0495 LeuS Leucyl-tRNA synth 89.4 0.62 1.4E-05 49.6 5.6 73 77-150 34-121 (814)
80 TIGR00435 cysS cysteinyl-tRNA 88.2 2.1 4.5E-05 42.7 8.1 72 79-150 23-107 (465)
81 PRK13208 valS valyl-tRNA synth 86.8 1.3 2.9E-05 46.7 6.1 74 77-150 38-138 (800)
82 PLN02563 aminoacyl-tRNA ligase 86.7 2.1 4.6E-05 46.5 7.7 74 77-150 110-198 (963)
83 KOG1147 Glutamyl-tRNA syntheta 86.1 2.2 4.8E-05 43.8 6.9 73 80-161 200-276 (712)
84 PLN02946 cysteine-tRNA ligase 85.2 4.5 9.8E-05 41.5 8.8 71 77-148 79-164 (557)
85 TIGR00422 valS valyl-tRNA synt 84.6 1.4 3E-05 47.0 5.0 45 77-121 33-82 (861)
86 PTZ00419 valyl-tRNA synthetase 84.5 1.2 2.6E-05 48.3 4.6 46 77-122 60-111 (995)
87 COG0525 ValS Valyl-tRNA synthe 84.5 1.1 2.5E-05 48.0 4.2 64 87-150 44-136 (877)
88 PLN02943 aminoacyl-tRNA ligase 83.5 1.4 3.1E-05 47.7 4.6 45 77-121 88-137 (958)
89 PRK05729 valS valyl-tRNA synth 80.5 2.1 4.5E-05 45.8 4.5 44 78-121 37-85 (874)
90 PLN02843 isoleucyl-tRNA synthe 79.8 2.9 6.4E-05 45.4 5.4 75 77-151 32-136 (974)
91 cd02168 NMNAT_Nudix Nicotinami 78.9 7.9 0.00017 33.8 6.9 72 91-169 11-85 (181)
92 PRK14534 cysS cysteinyl-tRNA s 75.9 5.6 0.00012 40.1 5.7 72 78-150 21-117 (481)
93 KOG0435 Leucyl-tRNA synthetase 75.8 3.5 7.6E-05 43.4 4.3 74 73-147 53-141 (876)
94 PRK14535 cysS cysteinyl-tRNA s 75.3 13 0.00028 39.2 8.3 74 76-150 246-334 (699)
95 COG0018 ArgS Arginyl-tRNA synt 74.3 3.1 6.8E-05 42.8 3.5 44 217-260 336-392 (577)
96 PF00750 tRNA-synt_1d: tRNA sy 73.1 4.3 9.3E-05 38.9 4.0 42 82-123 26-73 (354)
97 TIGR00456 argS arginyl-tRNA sy 72.5 3.7 8.1E-05 41.8 3.6 41 218-258 330-379 (566)
98 cd02166 NMNAT_Archaea Nicotina 71.8 20 0.00043 30.5 7.4 64 91-160 11-77 (163)
99 PRK14900 valS valyl-tRNA synth 71.5 2.4 5.2E-05 46.4 2.1 45 77-121 48-97 (1052)
100 PF02662 FlpD: Methyl-viologen 70.8 19 0.00041 29.5 6.8 71 83-159 32-103 (124)
101 PF00133 tRNA-synt_1: tRNA syn 69.0 6 0.00013 40.6 4.2 47 76-122 22-74 (601)
102 PLN02381 valyl-tRNA synthetase 68.8 3.2 6.9E-05 45.6 2.3 45 77-121 128-177 (1066)
103 PRK12451 arginyl-tRNA syntheta 67.0 5.1 0.00011 40.9 3.2 44 217-260 326-380 (562)
104 TIGR03447 mycothiol_MshC cyste 66.5 25 0.00055 34.8 7.8 71 78-148 36-120 (411)
105 PLN02286 arginine-tRNA ligase 64.7 4.8 0.0001 41.2 2.5 39 82-120 123-167 (576)
106 PRK05743 ileS isoleucyl-tRNA s 62.4 4.6 0.0001 43.6 2.0 74 78-151 50-152 (912)
107 TIGR00392 ileS isoleucyl-tRNA 60.3 5.4 0.00012 42.6 2.0 47 76-122 35-87 (861)
108 PRK12418 cysteinyl-tRNA synthe 59.9 24 0.00051 34.6 6.2 69 79-147 10-92 (384)
109 PLN02660 pantoate--beta-alanin 58.2 25 0.00054 33.2 5.8 27 216-242 146-172 (284)
110 PF01406 tRNA-synt_1e: tRNA sy 57.8 37 0.0008 32.4 6.9 54 206-262 196-263 (300)
111 PTZ00399 cysteinyl-tRNA-synthe 56.7 41 0.00088 35.2 7.6 54 205-260 257-324 (651)
112 KOG0436 Methionyl-tRNA synthet 56.1 35 0.00077 34.5 6.7 64 86-149 49-125 (578)
113 TIGR00395 leuS_arch leucyl-tRN 55.2 5.9 0.00013 42.9 1.3 40 78-117 26-70 (938)
114 PLN02959 aminoacyl-tRNA ligase 50.1 8.5 0.00018 42.5 1.5 30 87-116 56-89 (1084)
115 KOG1149 Glutamyl-tRNA syntheta 49.6 31 0.00066 34.9 5.1 77 79-161 34-118 (524)
116 PRK05379 bifunctional nicotina 47.7 89 0.0019 29.8 7.9 70 79-159 8-81 (340)
117 PRK01153 nicotinamide-nucleoti 47.5 79 0.0017 27.3 6.9 64 85-159 9-77 (174)
118 PTZ00427 isoleucine-tRNA ligas 47.4 13 0.00028 41.6 2.4 46 77-122 102-153 (1205)
119 PRK13804 ileS isoleucyl-tRNA s 46.7 12 0.00027 40.7 2.1 46 77-122 54-105 (961)
120 COG1908 FrhD Coenzyme F420-red 45.0 83 0.0018 26.5 6.2 90 60-159 11-104 (132)
121 PRK06039 ileS isoleucyl-tRNA s 43.8 14 0.0003 40.2 2.0 46 77-122 41-92 (975)
122 KOG1148 Glutaminyl-tRNA synthe 40.9 52 0.0011 34.5 5.4 94 79-182 247-353 (764)
123 PLN02882 aminoacyl-tRNA ligase 40.5 19 0.00041 40.2 2.3 45 78-122 39-89 (1159)
124 KOG0432 Valyl-tRNA synthetase 36.4 28 0.0006 37.9 2.7 37 88-124 87-127 (995)
125 PLN02413 choline-phosphate cyt 34.9 1.1E+02 0.0024 29.2 6.2 48 68-120 17-67 (294)
126 PF01467 CTP_transf_2: Cytidyl 34.0 1.9E+02 0.0041 22.6 6.8 33 90-123 8-40 (157)
127 PRK13793 nicotinamide-nucleoti 33.8 1.3E+02 0.0028 26.9 6.2 38 79-122 6-44 (196)
128 TIGR00125 cyt_tran_rel cytidyl 29.6 69 0.0015 22.2 3.1 27 89-118 9-35 (66)
129 TIGR00018 panC pantoate--beta- 29.0 32 0.0007 32.4 1.6 27 216-242 143-169 (282)
130 COG4320 Uncharacterized protei 26.3 28 0.00062 33.9 0.7 52 88-145 62-134 (410)
131 cd00560 PanC Pantoate-beta-ala 26.0 81 0.0018 29.6 3.7 34 83-120 24-58 (277)
132 PLN02871 UDP-sulfoquinovose:DA 24.2 3.1E+02 0.0068 26.5 7.6 43 76-118 56-100 (465)
133 cd02167 NMNAT_NadR Nicotinamid 23.8 1.4E+02 0.003 25.3 4.4 29 91-122 11-39 (158)
134 COG1056 NadR Nicotinamide mono 23.7 1.4E+02 0.0031 26.1 4.6 66 80-155 6-75 (172)
135 PF10009 DUF2252: Uncharacteri 22.6 43 0.00094 32.7 1.3 36 88-129 47-83 (385)
136 PF06574 FAD_syn: FAD syntheta 22.2 74 0.0016 27.0 2.5 57 91-148 17-77 (157)
137 PRK00380 panC pantoate--beta-a 21.0 92 0.002 29.2 3.0 27 216-242 140-166 (281)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.5e-61 Score=459.93 Aligned_cols=209 Identities=76% Similarity=1.192 Sum_probs=187.6
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHH
Q 024523 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (266)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~ 136 (266)
+|+++.++..+.++.+++.....++|+||||||.+|||||+|+|++|++||++++++|+||||||++.+.++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 34444443444444444445567899999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCcCCCceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcC
Q 024523 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (266)
Q Consensus 137 ~~~~~~lA~GlDp~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~ 216 (266)
+++++|+||||||+|+.||+||++++|.+|+|+|+|.+++++|+||+|||++.+..+++++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998776556789999999999999999999
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCCcccccCCCCCceeccCCC
Q 024523 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVDSL 265 (266)
Q Consensus 217 adlvpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~k~g~~~~~if~~p~~ 265 (266)
+|+||||+||+||+|||||||+|||+.||.+.++++|++.+.+|++|++
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~ 233 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEA 233 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCee
Confidence 9999999999999999999999999999866666778777778888864
No 2
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-57 Score=421.09 Aligned_cols=170 Identities=60% Similarity=0.980 Sum_probs=162.8
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEecceeeecCCCH--HHHHHHHHHHHHHHHHcCcCCCce
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKA 152 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g-~~v~ilIADlhA~~~~~~~--e~ir~~~~~~~~~~lA~GlDp~Kt 152 (266)
..+++|+||++|||.||||||+|++++|+++|++ ++++|+|||+||+|.+.++ +.+++++++++++|+|+||||+|+
T Consensus 3 ~~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~ 82 (314)
T COG0180 3 MKKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS 82 (314)
T ss_pred CCCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc
Confidence 4578999999999999999999999999999997 5999999999999997765 899999999999999999999999
Q ss_pred EEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHH
Q 024523 153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (266)
Q Consensus 153 ~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleL 232 (266)
+||+||++++|.+|.|+|+|.+++++|+|+.+||++..+.+ +++++|+|.||+|||||||+|++++||||.||+||+||
T Consensus 83 ~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleL 161 (314)
T COG0180 83 TIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLEL 161 (314)
T ss_pred EEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHH
Confidence 99999999999999999999999999999999999987755 68999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCC
Q 024523 233 TRELAERVNYLYGG 246 (266)
Q Consensus 233 aRdiA~r~n~~yg~ 246 (266)
|||||+|||+.||.
T Consensus 162 tRDiA~rfn~~y~~ 175 (314)
T COG0180 162 TRDIARRFNHLYGE 175 (314)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999999994
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.7e-56 Score=427.19 Aligned_cols=169 Identities=41% Similarity=0.720 Sum_probs=159.2
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if 155 (266)
..+|||||+|||.+|||||+|+|++|+++|+ +++++|+||||||+|++.+++++++++++++++|+||||||+|++||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 4589999999999999999999999999976 89999999999999988899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhc---C---CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHH
Q 024523 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (266)
Q Consensus 156 ~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~---g---~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~h 229 (266)
+||++++|.||+|+|+|.+++++|+|+++||++..+. + .+++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999875332 1 245899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCC
Q 024523 230 LELTRELAERVNYLYGG 246 (266)
Q Consensus 230 leLaRdiA~r~n~~yg~ 246 (266)
+||+||||+|||+.||.
T Consensus 162 lELaRdIA~rFN~~yg~ 178 (431)
T PRK12284 162 IEMARDIAQRFNHLYGG 178 (431)
T ss_pred HHHHHHHHHHHhhhcCC
Confidence 99999999999999974
No 4
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-56 Score=404.71 Aligned_cols=171 Identities=60% Similarity=0.900 Sum_probs=164.2
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhccC----cEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY----ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~----~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~ 153 (266)
+.++++||||||.+|||||+|++++|++||+.+ .++|+|+|+||++.|.++.++|+++.++++.++|||+||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 789999999999999999999999999999944 3799999999999999999999999999999999999999999
Q ss_pred EEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHH
Q 024523 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (266)
Q Consensus 154 if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLa 233 (266)
+|+||++++|.|+.|+|+|.++++||+||+|||++..+++...+++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999877666789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCCc
Q 024523 234 RELAERVNYLYGGRK 248 (266)
Q Consensus 234 RdiA~r~n~~yg~~~ 248 (266)
|++|++||..||.++
T Consensus 173 r~lA~~fN~~Y~~~~ 187 (347)
T KOG2713|consen 173 RHLAQAFNKTYGTEI 187 (347)
T ss_pred HHHHHHHhhhccCee
Confidence 999999999999654
No 5
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-55 Score=413.75 Aligned_cols=169 Identities=41% Similarity=0.712 Sum_probs=158.1
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if 155 (266)
+.++|+|+||||.+|||||+|++++|+++|+ +++++|+||||||++.+.+++++++++++++++|+||||||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 4689999999999999999999999999987 45599999999999877899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhc-----C-CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHH
Q 024523 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (266)
Q Consensus 156 ~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~-----g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~h 229 (266)
+||++++|++|.|+++|.++++||+||++||++.... + ++++++|+++||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 9999999999999999999999999999999986532 1 246899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCC
Q 024523 230 LELTRELAERVNYLYGG 246 (266)
Q Consensus 230 leLaRdiA~r~n~~yg~ 246 (266)
+|||||+|+|||++||.
T Consensus 163 leLtRdiA~rfn~~yg~ 179 (332)
T PRK12556 163 IEIARDIATYFNHTFGD 179 (332)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999999974
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.2e-55 Score=417.84 Aligned_cols=168 Identities=43% Similarity=0.817 Sum_probs=160.3
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
.+||+|+||||.||||||+|++++|+++|++++++|+||||||+|++ .+++++++++.+++++|+|||+||+|+.||+|
T Consensus 3 ~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~Q 82 (398)
T PRK12283 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQ 82 (398)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 47999999999999999999999999999999999999999999985 49999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHH
Q 024523 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236 (266)
Q Consensus 158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdi 236 (266)
|++++|++|+|+|+|.+++++|+|+++||++..+.. .+++++|+++||+|||||||+|++|+||||+||+||+||+|||
T Consensus 83 S~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRdI 162 (398)
T PRK12283 83 SKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREI 162 (398)
T ss_pred CCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHHH
Confidence 999999999999999999999999999999876532 3678999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCC
Q 024523 237 AERVNYLYGG 246 (266)
Q Consensus 237 A~r~n~~yg~ 246 (266)
|+|||+.||.
T Consensus 163 A~rfN~~yg~ 172 (398)
T PRK12283 163 ARRFNHLYGR 172 (398)
T ss_pred HHHHHHhcCc
Confidence 9999999995
No 7
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-54 Score=404.93 Aligned_cols=166 Identities=64% Similarity=1.082 Sum_probs=159.8
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcc
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qS 158 (266)
.++|+|++|||+||||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS 81 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS 81 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence 58999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHH
Q 024523 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (266)
Q Consensus 159 d~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~ 238 (266)
+|++|.+++|++++.+++++|+|+++||++.++. ++++++|+|+||+|||||||++++|+||||+||+||+|||||+|+
T Consensus 82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~-~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQ-KENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhcc-CCCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999886543 378899999999999999999999999999999999999999999
Q ss_pred HhhhhhC
Q 024523 239 RVNYLYG 245 (266)
Q Consensus 239 r~n~~yg 245 (266)
|||++||
T Consensus 161 ~~n~~~~ 167 (333)
T PRK00927 161 RFNNLYG 167 (333)
T ss_pred Hhhhhcc
Confidence 9999987
No 8
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=3.6e-53 Score=397.79 Aligned_cols=166 Identities=52% Similarity=0.780 Sum_probs=158.3
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCC--CHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 024523 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 154 (266)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~--~~e~ir~~~~~~~~~~lA~GlDp~Kt~i 154 (266)
+++++|+|++|||.+|||||+|+++.|..+|.|++++|+||||||+|++. +++.+++++++++++|+||||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 47899999999999999999999999988888999999999999999865 8899999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHH
Q 024523 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (266)
Q Consensus 155 f~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaR 234 (266)
|+||++++|+++.|+|+|.+|+++|+|+.+||++.. .+++++|+|+||+|||||||++++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 26789999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhC
Q 024523 235 ELAERVNYLYG 245 (266)
Q Consensus 235 diA~r~n~~yg 245 (266)
|+|+|||++||
T Consensus 158 dia~r~n~~~~ 168 (328)
T TIGR00233 158 DLAERFNKKFK 168 (328)
T ss_pred HHHHHhhhhcC
Confidence 99999999998
No 9
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=3.4e-52 Score=392.00 Aligned_cols=169 Identities=37% Similarity=0.620 Sum_probs=159.8
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~ 156 (266)
+.++|||++|||.+|||||+|++++|++||+.++++|+||||||+++ +.+++++++++++++++|+|+||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 35899999999999999999999999999997679999999999997 68999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHH
Q 024523 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (266)
Q Consensus 157 qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRd 235 (266)
||+|++|.++.|++++.++++|++|+.+||++...++ ++++++|+++||+||||||+++++|+||||+||+||+||+||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998765543 467899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCC
Q 024523 236 LAERVNYLYGG 246 (266)
Q Consensus 236 iA~r~n~~yg~ 246 (266)
+|+|||+.||.
T Consensus 162 iA~~~n~~~~~ 172 (333)
T PRK12282 162 IVRRFNSLYGT 172 (333)
T ss_pred HHHHHhhhcCC
Confidence 99999999983
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.8e-51 Score=378.57 Aligned_cols=164 Identities=56% Similarity=0.968 Sum_probs=157.7
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC-CHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 80 ~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~-~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
++|+|++|||.+|||||++++++|++||+ |++++|+|||+||++++. +++++++++++++++|+|+||||+|++||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999998899999999 999999999999999976 9999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (266)
Q Consensus 158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA 237 (266)
|++++|.++.|+|+|.+++++|+|+.+||++.+. .+++++|+|+||+||||||+++++|+||||+||+||+||+||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998664 36889999999999999999999999999999999999999999
Q ss_pred HHhhhhhC
Q 024523 238 ERVNYLYG 245 (266)
Q Consensus 238 ~r~n~~yg 245 (266)
+|||++||
T Consensus 159 ~r~n~~~~ 166 (280)
T cd00806 159 RRFNKLYG 166 (280)
T ss_pred HHhccccc
Confidence 99998875
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.5e-49 Score=375.92 Aligned_cols=177 Identities=25% Similarity=0.340 Sum_probs=163.5
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKAS 153 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~ 153 (266)
++++++|||++|||.||||||++ +.+|++||+ |++++|+|||+||+++ +.+++++++++++++++|+|+||||+|++
T Consensus 64 ~~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~ 142 (368)
T PRK12285 64 GKPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE 142 (368)
T ss_pred CCCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 46899999999999999999986 569999999 8999999999999998 57999999999999999999999999999
Q ss_pred EEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhh------cCCCEEEecCcch
Q 024523 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQK 227 (266)
Q Consensus 154 if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~------l~adlvpvG~DQ~ 227 (266)
||+||++++|.++.|.+++.+|+++++|+.+|+ +++++|+++||+|||||||+ +++|+||||+||+
T Consensus 143 i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~ 214 (368)
T PRK12285 143 IYFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQD 214 (368)
T ss_pred EEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchH
Confidence 999999999999999999999999999988763 56899999999999999999 7889999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCCc-------------ccccCCCC--Cceec
Q 024523 228 QHLELTRELAERVNYLYGGRK-------------WKKLGGRG--GAIFK 261 (266)
Q Consensus 228 ~hleLaRdiA~r~n~~yg~~~-------------~~k~g~~~--~~if~ 261 (266)
||+|||||+|+|||..||... ++||.||. ++||-
T Consensus 215 ~h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L 263 (368)
T PRK12285 215 PHIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPESAIYL 263 (368)
T ss_pred HHHHHHHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCCCeeec
Confidence 999999999999999998643 57999984 36663
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-46 Score=353.20 Aligned_cols=179 Identities=25% Similarity=0.396 Sum_probs=157.5
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~Kt~ 153 (266)
.+++++|+|++|||++||||+++ +.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|++
T Consensus 28 ~~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~ 106 (329)
T PRK08560 28 KEEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE 106 (329)
T ss_pred CCCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 56889999999999999999874 569999999 99999999999999995 6999999999999999999999999999
Q ss_pred EEEcccchhhh---HHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHH
Q 024523 154 VFVQSHVRAHV---ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (266)
Q Consensus 154 if~qSd~~~~~---eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hl 230 (266)
||+||+|+++. .+.|.+++.+++++++|+.+++.+ . . ++.++|+|+||+|||||||+|++|+||||.||+||+
T Consensus 107 i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~ 182 (329)
T PRK08560 107 FVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIH 182 (329)
T ss_pred EEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHH
Confidence 99999998765 455569999999999998887542 2 2 346999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh----------CCCcc--cccCCCC-C-cee
Q 024523 231 ELTRELAERVNYLY----------GGRKW--KKLGGRG-G-AIF 260 (266)
Q Consensus 231 eLaRdiA~r~n~~y----------g~~~~--~k~g~~~-~-~if 260 (266)
+|+||+|+|||+.- |.+ + +||+||. + +||
T Consensus 183 ~l~Rdia~~~n~~~p~~l~~~~l~~L~-g~~~KMSKS~p~~~I~ 225 (329)
T PRK08560 183 MLAREVLPKLGYKKPVCIHTPLLTGLD-GGGIKMSKSKPGSAIF 225 (329)
T ss_pred HHHHHhhHhcCCCCceEEEcCccCCCC-CCCCCCcCCCCCCeec
Confidence 99999999999642 111 3 3999987 4 665
No 13
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3.7e-46 Score=342.34 Aligned_cols=176 Identities=30% Similarity=0.475 Sum_probs=159.6
Q ss_pred eEEEecCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC----------CHHHHHHHHHHHHHHHHHcCc
Q 024523 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (266)
Q Consensus 80 ~iytGi~PTG-~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~----------~~e~ir~~~~~~~~~~lA~Gl 147 (266)
.+|+|++||| .+|||||++ +.+|++||+ |++++++|||+||+++.. +++++++++++++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 599999999 679999999 999999999999999843 799999999999999999999
Q ss_pred C--CCceEEEEcccch---hhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCC----C
Q 024523 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (266)
Q Consensus 148 D--p~Kt~if~qSd~~---~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~a----d 218 (266)
| |+|++||.||+|+ +|.++.|.+++.+++++|.|+.+||++.. +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~----~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSE----EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhc----CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999998 89999999999999999999999998752 57899999999999999999987 9
Q ss_pred EEEecCcchHHHHHHHHHHHHhhh---hhCCCc-------ccccCCCCC-cee
Q 024523 219 FVPVGEDQKQHLELTRELAERVNY---LYGGRK-------WKKLGGRGG-AIF 260 (266)
Q Consensus 219 lvpvG~DQ~~hleLaRdiA~r~n~---~yg~~~-------~~k~g~~~~-~if 260 (266)
+||||.||++|++++||+|+|+|. -+|... |+|||||.+ .++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~ 208 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKW 208 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCCCcc
Confidence 999999999999999999999982 123221 689999987 554
No 14
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-45 Score=351.36 Aligned_cols=183 Identities=20% Similarity=0.308 Sum_probs=157.2
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C--CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~--~~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++++|+|++|||++||||.+.-+.+|++||+ |++++|+||||||+++ + .+++++++++++++++|+|+|+||+|
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k 143 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDN 143 (383)
T ss_pred CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 467899999999999999994322238999999 9999999999999998 4 58999999999999999999999999
Q ss_pred eEEEEccc-chhhhHHHHHHhc----cCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523 152 ASVFVQSH-VRAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (266)
Q Consensus 152 t~if~qSd-~~~~~eL~w~Ls~----~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ 226 (266)
++||+||+ +++|.+++|++.+ .++++|++|+.+++++.. .++.++|+|+||+||||||+++++|+||||+||
T Consensus 144 ~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ 220 (383)
T PTZ00126 144 VRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQ 220 (383)
T ss_pred eEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccH
Confidence 99999998 6789999998655 469999999998765422 256799999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhC-----------C-CcccccCCCCC--ceec
Q 024523 227 KQHLELTRELAERVNYLYG-----------G-RKWKKLGGRGG--AIFK 261 (266)
Q Consensus 227 ~~hleLaRdiA~r~n~~yg-----------~-~~~~k~g~~~~--~if~ 261 (266)
++|++|+||+|++||+.+. . +-.+||.||.. +||-
T Consensus 221 ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L 269 (383)
T PTZ00126 221 RKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFM 269 (383)
T ss_pred HHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecC
Confidence 9999999999999997542 1 11369999863 5663
No 15
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.2e-45 Score=336.23 Aligned_cols=176 Identities=23% Similarity=0.291 Sum_probs=157.8
Q ss_pred ceEEEecCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHHHcC
Q 024523 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (266)
Q Consensus 79 ~~iytGi~PTG-~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~lA~G 146 (266)
.++|+||+||| .+|||||++++ +|++||+ |++++++|||+||+++ | .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 79999999875 9999999 9999999999999998 6 589999999999999999999
Q ss_pred cC--CCceEEEEcccchhhhHHHHH----HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEE
Q 024523 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (266)
Q Consensus 147 lD--p~Kt~if~qSd~~~~~eL~w~----Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlv 220 (266)
+| |+|++||+||+|+++ ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 97 999999999999887 5666 9999999999999999887542 367899999999999999999999999
Q ss_pred EecCcchHHHHHHHHHHHHhhhhh--CCCc-------ccccCCCCC-ce
Q 024523 221 PVGEDQKQHLELTRELAERVNYLY--GGRK-------WKKLGGRGG-AI 259 (266)
Q Consensus 221 pvG~DQ~~hleLaRdiA~r~n~~y--g~~~-------~~k~g~~~~-~i 259 (266)
|||.||++|++++||+|+|||+.. +... |+|||||.+ ++
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G~KMSKS~~~~~ 204 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAI 204 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCCCcccCCCCCcc
Confidence 999999999999999999997532 1110 689999887 65
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=7e-45 Score=334.26 Aligned_cols=186 Identities=35% Similarity=0.576 Sum_probs=165.2
Q ss_pred CCCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC---CHHHHHHHHHHHHHH--HHHcCcC
Q 024523 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGID 148 (266)
Q Consensus 75 ~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~---~~e~ir~~~~~~~~~--~lA~GlD 148 (266)
..+++++|+|++|||.|||||+++ +.+|++||+ |++++|+|||+||++++. +++.++++++++++. ++|+|+|
T Consensus 2 ~~~~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d 80 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLD 80 (292)
T ss_dssp THSSEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred CCCCcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccC
Confidence 457899999999999999997775 469999997 999999999999999943 599999999999999 9999999
Q ss_pred CCceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcCCCEEEecCcch
Q 024523 149 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (266)
Q Consensus 149 p~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~ 227 (266)
|+|++||+||+|.++.++.|++.+..+..+++|+++++++.++.+ ++++++|+|+||+|||||++++++|+||||.||+
T Consensus 81 ~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~ 160 (292)
T PF00579_consen 81 PEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQR 160 (292)
T ss_dssp TTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGH
T ss_pred ccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHH
Confidence 999999999999999999999999999999999999999777666 3689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCCc-------------cc-ccCCCCC--ceec
Q 024523 228 QHLELTRELAERVNYLYGGRK-------------WK-KLGGRGG--AIFK 261 (266)
Q Consensus 228 ~hleLaRdiA~r~n~~yg~~~-------------~~-k~g~~~~--~if~ 261 (266)
+|++++||+|+|+|++..... |. ||+||.+ +||-
T Consensus 161 ~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L 210 (292)
T PF00579_consen 161 GHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFL 210 (292)
T ss_dssp HHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BT
T ss_pred HHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEE
Confidence 999999999999999811110 55 9999887 4553
No 17
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.8e-42 Score=345.46 Aligned_cols=184 Identities=22% Similarity=0.348 Sum_probs=157.2
Q ss_pred CCCceEEEecCCCCcchhhh-HHHHHHHHHHHhccCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 76 SVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh-~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++++|+|++|||+||||| ++++++.|..+|+|++++|+||||||+|++ .++++++.++++++++|+|+|+||+|
T Consensus 30 ~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK 109 (682)
T PTZ00348 30 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK 109 (682)
T ss_pred CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 45789999999999999999 466777777778899999999999999984 38899999999999999999999999
Q ss_pred eEEEEccc-chhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC--CCCccchhhhchHHHHHhhhhcCCCEEEecCcchH
Q 024523 152 ASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (266)
Q Consensus 152 t~if~qSd-~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g--~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~ 228 (266)
++||+||+ +++|.+++|++ .++++++.++.++|+....++ ++++++|+++||+|||||||++++|+||||+||+|
T Consensus 110 ~~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~q 187 (682)
T PTZ00348 110 VLFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRK 187 (682)
T ss_pred eEEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHH
Confidence 99999998 78899999998 467888888888877543222 23589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCC------------cccccCCCC--Cceec
Q 024523 229 HLELTRELAERVNYLYGGR------------KWKKLGGRG--GAIFK 261 (266)
Q Consensus 229 hleLaRdiA~r~n~~yg~~------------~~~k~g~~~--~~if~ 261 (266)
|++|+||+|++||+.+..- -.+||.||. ++||-
T Consensus 188 h~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L 234 (682)
T PTZ00348 188 VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 234 (682)
T ss_pred HHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecc
Confidence 9999999999999655311 126999986 36663
No 18
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.7e-41 Score=326.91 Aligned_cols=184 Identities=21% Similarity=0.287 Sum_probs=159.4
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHH
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL 143 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~l 143 (266)
.+++++|+||+|||+ |||||+++ +.+|++||+ |++++++|||+||+++ |. +.+++++|+.++. ..+
T Consensus 31 ~~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~-~ql 108 (408)
T PRK05912 31 KEPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIK-EQL 108 (408)
T ss_pred CCCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHH-HHH
Confidence 368899999999996 99999996 469999999 8999999999999998 52 5678899987764 455
Q ss_pred HcCcCCCc--eEEEEcccchhhhHHHHHHh---ccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc---
Q 024523 144 ACGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (266)
Q Consensus 144 A~GlDp~K--t~if~qSd~~~~~eL~w~Ls---~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l--- 215 (266)
++|+||++ ++||+||+|.++.++.|++. +.+++++|.++.+||.+... ++++++|+|+||+|||||++++
T Consensus 109 ~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~ 186 (408)
T PRK05912 109 FKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKR 186 (408)
T ss_pred HHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhcc
Confidence 99999999 99999999999999998876 89999998888888765432 2679999999999999999999
Q ss_pred -CCCEEEecCcchHHHHHHHHHHHHhh--hhhCCCc-------ccccCCCCC-ceeccC
Q 024523 216 -QSDFVPVGEDQKQHLELTRELAERVN--YLYGGRK-------WKKLGGRGG-AIFKVD 263 (266)
Q Consensus 216 -~adlvpvG~DQ~~hleLaRdiA~r~n--~~yg~~~-------~~k~g~~~~-~if~~p 263 (266)
++|++|||.||++|++++||+|+|+| ..||... |+|||||.+ +||-.+
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCceeCCC
Confidence 99999999999999999999999998 3455432 689999987 888544
No 19
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=2.7e-40 Score=315.80 Aligned_cols=180 Identities=22% Similarity=0.282 Sum_probs=155.8
Q ss_pred CceEEEecCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHHHc
Q 024523 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (266)
Q Consensus 78 ~~~iytGi~PTG-~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~lA~ 145 (266)
++++|+||+||| .|||||++++ .+|++||+ |++++++|||+||+++ |. +.+++++|+ ++++.++|+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~l-~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVPL-LKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHHH-HHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 789999999999 6999999975 58999999 9999999999999998 53 455666666 678889999
Q ss_pred CcCCCceEEEEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEe
Q 024523 146 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (266)
Q Consensus 146 GlDp~Kt~if~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpv 222 (266)
|+||+|++|++||+|.. ++++.+.+++.+++++|.+..+++.+. . +++++++|+||+|||||++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~---~-~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL---E-RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH---h-cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999999999999853 778888899999999999999886543 2 4599999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhhhhh--CCCc-------ccccCCCCC-ceeccC
Q 024523 223 GEDQKQHLELTRELAERVNYLY--GGRK-------WKKLGGRGG-AIFKVD 263 (266)
Q Consensus 223 G~DQ~~hleLaRdiA~r~n~~y--g~~~-------~~k~g~~~~-~if~~p 263 (266)
|.||++|++++||+|++++.+. |.+. ++||||+++ +|+.-|
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCCCcccCCc
Confidence 9999999999999999998643 3332 589999975 776544
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.3e-40 Score=315.11 Aligned_cols=184 Identities=17% Similarity=0.260 Sum_probs=155.2
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHH
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~l 143 (266)
.+++++|+|++|||. |||||++++ .+|++||+ |++++++|||+||+++ | .+.+++++|+.++.+++.
T Consensus 31 ~~~~~iy~G~dPT~~sLHlGhlv~l-~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~ 109 (410)
T PRK13354 31 GKPLTLYLGFDPTAPSLHIGHLVPL-MKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIF 109 (410)
T ss_pred CCCcEEEEcccCCCCCcchhhHHHH-HHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 568999999999996 999998875 58999999 8999999999999997 4 256789999998888877
Q ss_pred HcCcCCCceEEEEcccchhhhHHHHHH---hccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhc----
Q 024523 144 ACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY---- 215 (266)
Q Consensus 144 A~GlDp~Kt~if~qSd~~~~~eL~w~L---s~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l---- 215 (266)
+ |+||+|++|++||+|.++.++.|++ +..++++ ||++++++..+++ ++++++++|+||+|||||++++
T Consensus 110 ~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~---~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~ 185 (410)
T PRK13354 110 K-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVN---RMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKE 185 (410)
T ss_pred H-hcCccceEEEECccccccccHHHHHHHHHhhccHH---HHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccC
Confidence 6 8999999999999998877777765 4555555 6666666555553 3678999999999999999999
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhh--CCCc-------ccccCCCCC-ceeccCC
Q 024523 216 QSDFVPVGEDQKQHLELTRELAERVNYLY--GGRK-------WKKLGGRGG-AIFKVDS 264 (266)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdiA~r~n~~y--g~~~-------~~k~g~~~~-~if~~p~ 264 (266)
++|++|||.||++|++++||+++|+|.++ |... |+|||||.+ +||--++
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCceeccCC
Confidence 99999999999999999999999998764 3222 679999988 8885543
No 21
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.1e-38 Score=305.18 Aligned_cols=178 Identities=18% Similarity=0.281 Sum_probs=146.5
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++++|+|++|||. |||||+++++ +.++||+ ++.++|+|||+|+++.+ .++|++++++++|+++|+|+||||+|
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k 149 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER 149 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 568999999999995 9999999987 5556998 57899999999999984 59999999999999999999999999
Q ss_pred eEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh------cCC-----CE
Q 024523 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL------YQS-----DF 219 (266)
Q Consensus 152 t~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~------l~a-----dl 219 (266)
++||.|++|. .+++|... -++.|+.+++++.+.+| +++.++|+++||+|||||||+ ++. |+
T Consensus 150 t~I~s~~~~~--~~~~~~~~-----~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~l 222 (383)
T PLN02486 150 TFIFSDFDYV--GGAFYKNM-----VKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCL 222 (383)
T ss_pred eEEEeccHHH--hHhHHHHH-----HHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcce
Confidence 9999777763 34444332 25678888888887776 567899999999999999983 444 99
Q ss_pred EEecCcchHHHHHHHHHHHHhhhhh----------CCC-cccccCCCCC--ceec
Q 024523 220 VPVGEDQKQHLELTRELAERVNYLY----------GGR-KWKKLGGRGG--AIFK 261 (266)
Q Consensus 220 vpvG~DQ~~hleLaRdiA~r~n~~y----------g~~-~~~k~g~~~~--~if~ 261 (266)
||||+||+||++||||+|+|||+.- |.. ..+||+||.+ +||-
T Consensus 223 VPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L 277 (383)
T PLN02486 223 IPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYV 277 (383)
T ss_pred eecccchHHHHHHHHHHHHHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeec
Confidence 9999999999999999999998621 110 0269999875 5774
No 22
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-34 Score=273.62 Aligned_cols=185 Identities=22% Similarity=0.279 Sum_probs=151.9
Q ss_pred CceEEEecCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C-CCHHHHHHHHH----HHHHHHH-HcCcC
Q 024523 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAAIYL-ACGID 148 (266)
Q Consensus 78 ~~~iytGi~PTG-~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~-~~~e~ir~~~~----~~~~~~l-A~GlD 148 (266)
+.++|+||+||| .+||||++++ .++++||+ ||+++++|||+||+++ | ++.++.+..++ +|++.+. ++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l-~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPL-MKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHH-HHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 899999999999 5999999976 49999999 9999999999999999 6 45666665554 4444444 45766
Q ss_pred CC-ceEEEEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecC
Q 024523 149 NS-KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (266)
Q Consensus 149 p~-Kt~if~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~ 224 (266)
++ |++|.+||+|.+ +++....++..+||+|+.+..+++.+... +.++++.+|+||+|||+|+++++.|++.||.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~--~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLER--EQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhcc--CCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 66 999999999954 66666667899999998888886554322 3579999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhh--hhCCCc-------ccccCCCCC-ceeccCCC
Q 024523 225 DQKQHLELTRELAERVNY--LYGGRK-------WKKLGGRGG-AIFKVDSL 265 (266)
Q Consensus 225 DQ~~hleLaRdiA~r~n~--~yg~~~-------~~k~g~~~~-~if~~p~~ 265 (266)
|||.++.++||+++|+++ .||.+. |+||||+++ +++-.|+.
T Consensus 189 DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~a~~~~s~~ 239 (401)
T COG0162 189 DQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEK 239 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcccccCCCceEccCCC
Confidence 999999999999999886 223222 789999999 68866653
No 23
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.1e-29 Score=230.78 Aligned_cols=160 Identities=20% Similarity=0.340 Sum_probs=140.1
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHH-HHHHHHhccCc--EEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i-~k~~~LQ~g~~--v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
++|+++|||++||+. |||||.||+| .|| ||+.|+ .+|.++|+++++++ -..|+..+.+++|+++++|+|+||+
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~ 160 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPK 160 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCc
Confidence 579999999999976 9999999998 888 999766 69999999999995 4889999999999999999999999
Q ss_pred ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhc-----------CCC
Q 024523 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSD 218 (266)
Q Consensus 151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l-----------~ad 218 (266)
||+||.+.++..-.. ++ -++-++.+++++++.++.+| +++.++|++.+|..|||..+.. -+|
T Consensus 161 kTfIFsn~~y~g~~~---fy---~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~C 234 (397)
T KOG2145|consen 161 KTFIFSNLDYMGGPA---FY---ENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPC 234 (397)
T ss_pred ceEEEechhhccCcH---HH---HHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCce
Confidence 999999999753100 11 23556679999999888888 7889999999999999999974 269
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhh
Q 024523 219 FVPVGEDQKQHLELTRELAERVNYL 243 (266)
Q Consensus 219 lvpvG~DQ~~hleLaRdiA~r~n~~ 243 (266)
++|+.+||+|+++|+||+|+|+++.
T Consensus 235 LiPcAiDQDPyFRmtRDvA~rlg~~ 259 (397)
T KOG2145|consen 235 LIPCAIDQDPYFRMTRDVAPRLGYP 259 (397)
T ss_pred eceeeccCChHHHhhhhhhhhhCCC
Confidence 9999999999999999999999863
No 24
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.4e-26 Score=210.45 Aligned_cols=162 Identities=20% Similarity=0.161 Sum_probs=131.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC--CCHHHHHHHHHHHHHHH-HHc---CcCC
Q 024523 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIY-LAC---GIDN 149 (266)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~--~~~e~ir~~~~~~~~~~-lA~---GlDp 149 (266)
+.+.+|+|++|||+||+|.+++++ +..+|-+ ||+|.|++|||||++++ ...+.+..++.|+-..+ .|+ +.+.
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm~-kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPMM-KIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeeehh-HHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 568999999999999999998876 8888888 99999999999999984 34566666665554433 344 4456
Q ss_pred CceEEEEcccch---hhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523 150 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (266)
Q Consensus 150 ~Kt~if~qSd~~---~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ 226 (266)
|+..|.-.|++. +++-..+++++.++-..+++... ++.++. +...++.++||+|||+|++++.+|++.+|+||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga--evvkqv--e~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA--EVVKQV--ENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh--hHHHhh--cchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 777777777763 46666778888887777766654 444443 78899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhh
Q 024523 227 KQHLELTRELAERVNYL 243 (266)
Q Consensus 227 ~~hleLaRdiA~r~n~~ 243 (266)
|+.+.++|++++.+|++
T Consensus 188 RKIf~~A~eylp~l~yk 204 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLGYK 204 (360)
T ss_pred HHHHHHHHHhhhhhCcc
Confidence 99999999999999986
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.90 E-value=1.1e-23 Score=213.89 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=109.4
Q ss_pred cCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccch-----hhhHHHHHHhccCCHHHHh
Q 024523 109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-----AHVELMWLLSSATPIGWLN 180 (266)
Q Consensus 109 g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~-----~~~eL~w~Ls~~~tv~rL~ 180 (266)
|++++|++|||||++|. ++.++|++.++|+++.|.|+|+|++ ++|+|+||.. +||.+..-+++.++++|++
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~ 485 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE 485 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence 89999999999999994 6999999999999999999999999 9999999962 3455555579999999999
Q ss_pred chhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHHH
Q 024523 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239 (266)
Q Consensus 181 R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~r 239 (266)
|++. ++..++++++||+||++||+++++|++.+|+|||+.++||||++++
T Consensus 486 r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~ 535 (682)
T PTZ00348 486 ELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKG 535 (682)
T ss_pred HHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccc
Confidence 9762 2556999999999999999999999999999999999999999993
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.3e-21 Score=185.94 Aligned_cols=186 Identities=19% Similarity=0.232 Sum_probs=143.0
Q ss_pred CceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHHH-
Q 024523 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA- 144 (266)
Q Consensus 78 ~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~lA- 144 (266)
|.+||.|++||.. +|+||+++.| .+..+|. ||+++-+|++.+|.++ |. +.+.++.|++.+..++.+
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5889999999997 9999999776 8888888 9999999999999998 51 234455666555444443
Q ss_pred ---------cCcCCCceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh
Q 024523 145 ---------CGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL 214 (266)
Q Consensus 145 ---------~GlDp~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~ 214 (266)
+|..-.+-.|+.|++|-+-..|.=+|+..-.--|+..|+....++.+.. ++..++.+|+|-+|||+|.++
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAYDfy~ 221 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAYDFYH 221 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHH
Confidence 2444467899999998654444334443333344556666555666655 578999999999999999998
Q ss_pred c----CCCEEEecCcchHHHHHHHHHHHHhhh----hhCCCc-------ccccCCCCC-ceeccCC
Q 024523 215 Y----QSDFVPVGEDQKQHLELTRELAERVNY----LYGGRK-------WKKLGGRGG-AIFKVDS 264 (266)
Q Consensus 215 l----~adlvpvG~DQ~~hleLaRdiA~r~n~----~yg~~~-------~~k~g~~~~-~if~~p~ 264 (266)
+ +++++.+|.||+.|++.+-|+.+|+-. -||.++ |.|+||++| +||--|.
T Consensus 222 L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp~ 287 (467)
T KOG2623|consen 222 LYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDPS 287 (467)
T ss_pred HHHhcCeeEEecccccccccchHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEecCc
Confidence 5 799999999999999999999999854 477665 889999999 9996654
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.28 E-value=1.6e-11 Score=111.54 Aligned_cols=144 Identities=22% Similarity=0.192 Sum_probs=105.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce-------EEEEc
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ 157 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt-------~if~q 157 (266)
.|||.|||||+.+++.+|...+. +..+++-|.| |++. ....+....+.+++..+||++++. .+|.|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~~--r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQE--RSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCCC--CCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 58899999999999999988877 5556666888 4321 234456677788888899999974 38999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (266)
Q Consensus 158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA 237 (266)
|+-.+..+. . + ++. .. .| =|..+|++-++.|....+.++|+.|.|+..+....+.++
T Consensus 83 S~r~~~y~~---~-----~---~~L------~~-~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~ 139 (239)
T cd00808 83 SERLEIYRK---Y-----A---EKL------LE-KG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY 139 (239)
T ss_pred eCCHHHHHH---H-----H---HHH------HH-cC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence 984332111 1 0 111 01 12 278999999999999999999999999999999999999
Q ss_pred HHhhhhh---CC------CcccccCCCCCc
Q 024523 238 ERVNYLY---GG------RKWKKLGGRGGA 258 (266)
Q Consensus 238 ~r~n~~y---g~------~~~~k~g~~~~~ 258 (266)
+.||... .. ..++||-||.+.
T Consensus 140 ~aLg~~~p~~~h~pll~~~~g~KLSKR~~~ 169 (239)
T cd00808 140 EALGWEPPKFAHLPLILNPDGKKLSKRKGD 169 (239)
T ss_pred HHcCCCCCceEeeccccCCCCCcccCCCCC
Confidence 9998532 10 015677777763
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.27 E-value=2.5e-11 Score=100.54 Aligned_cols=38 Identities=39% Similarity=0.503 Sum_probs=37.3
Q ss_pred chHHHHHhhhhcCC---CEEEecCcchHHHHHHHHHHHHhh
Q 024523 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVN 241 (266)
Q Consensus 204 YPvLQAADIl~l~a---dlvpvG~DQ~~hleLaRdiA~r~n 241 (266)
||+.|+||++.+.. |++++|.||++|+++.++++++++
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~ 118 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG 118 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhC
Confidence 99999999999998 999999999999999999999997
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.02 E-value=4e-05 Score=69.61 Aligned_cols=142 Identities=20% Similarity=0.169 Sum_probs=94.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchhhh
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~~~ 164 (266)
.|||.|||||...++-+|..-+. +.++++=|=|.= - .....+....+.+++..+|++.+. .+|+||+..+.-
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD-~-----~R~~~~~~~~I~~dL~wlGl~wd~-~~~~QS~r~~~y 81 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTD-P-----ERSRPEYVESILEDLKWLGLDWDE-GPYRQSDRFDLY 81 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCC-C-----CCCChHHHHHHHHHHHHcCCCCCC-CeeehhcCHHHH
Confidence 58899999999988877765444 555555444422 1 112345667788888889999874 278899854321
Q ss_pred HHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHHHhhhhh
Q 024523 165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244 (266)
Q Consensus 165 eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~r~n~~y 244 (266)
+. . +++.. ..| |..+|=+--+.|=...+.++|.-|.|+..+...-+.+++.+|...
T Consensus 82 ~~---~--------~~~L~-------~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~ 137 (230)
T cd00418 82 RA---Y--------AEELI-------KKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEP 137 (230)
T ss_pred HH---H--------HHHHH-------HcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCC
Confidence 11 0 01111 111 556666666666667799999999999999999999999998632
Q ss_pred CC---------CcccccCCCCCc
Q 024523 245 GG---------RKWKKLGGRGGA 258 (266)
Q Consensus 245 g~---------~~~~k~g~~~~~ 258 (266)
-. ..++||-||.++
T Consensus 138 P~~~H~pll~~~~g~KLSKr~~~ 160 (230)
T cd00418 138 PRFYHFPRLLLEDGTKLSKRKLN 160 (230)
T ss_pred CeEEEeeeeeCCCCCCccCcCCC
Confidence 10 115788887763
No 30
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=97.95 E-value=0.00016 Score=69.43 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=56.1
Q ss_pred CceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcE-EEEEecceee---------------ec-C---------CC
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLHAI---------------TL-P---------YD 127 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v-~ilIADlhA~---------------~~-~---------~~ 127 (266)
+..|=||+-|||.+||||+...+ .-+.+.++ |+++ +++.+|.|.- ++ | ..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 56788899999999999987655 23444444 8886 5679999932 11 1 02
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCceEEEEcccch
Q 024523 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (266)
Q Consensus 128 ~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~ 161 (266)
++-+.++...+.+.+..+|++.+ +|.+++..
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y 130 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMY 130 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCch
Confidence 34456666777778888999764 77777753
No 31
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.69 E-value=0.00045 Score=69.23 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred ceEEEecCCCCcchhhhHHHHHHH--HHH-Hhc-cCcE-EEEEecceeeec--CC-------------------------
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKN--WIA-LQN-SYET-LFFIVDLHAITL--PY------------------------- 126 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k--~~~-LQ~-g~~v-~ilIADlhA~~~--~~------------------------- 126 (266)
..+=+|+.|||.+||||+-..+.. +.+ |.. |.++ +++.+|.|.-+. |.
T Consensus 25 ~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~ 104 (510)
T PRK00750 25 VVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGC 104 (510)
T ss_pred EEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCC
Confidence 788999999999999998665522 333 344 8886 677899996321 10
Q ss_pred CHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccc
Q 024523 127 DTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (266)
Q Consensus 127 ~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~ 160 (266)
..+-..++.....+.+-.+||+. ++|.+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gi~~---d~~~~t~~ 135 (510)
T PRK00750 105 HESYAEHFNAPLREFLDRFGIEY---EFISATEC 135 (510)
T ss_pred chHHHHHHHHHHHHHHHHcCCce---EEEehhhh
Confidence 11223444455566666789975 47777764
No 32
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.63 E-value=0.0001 Score=69.39 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=63.8
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~ 163 (266)
.|||.|||||+..++-+|..-+. |.+.++=|-|. ++ .....+....+.+++..+||+.|. .+|+||+..+ |
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe-~~~~QS~r~~~Y 85 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDG-PVLYQSQRHDAY 85 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCC-CceEeeccHHHH
Confidence 47799999999999988876666 67777777763 22 123445677888899999999885 3677999643 2
Q ss_pred hHH-------HHHHhccCCHHHHhch
Q 024523 164 VEL-------MWLLSSATPIGWLNKM 182 (266)
Q Consensus 164 ~eL-------~w~Ls~~~tv~rL~R~ 182 (266)
.+. .+.+.|.+|-.++++.
T Consensus 86 ~~~~~~L~~~G~aY~C~Ctr~el~~~ 111 (299)
T PRK05710 86 RAALDRLRAQGLVYPCFCSRKEIAAA 111 (299)
T ss_pred HHHHHHHHHCCCceecCCCHHHHHHH
Confidence 111 1236789998888644
No 33
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=97.33 E-value=0.00077 Score=53.05 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=51.5
Q ss_pred EEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcC
Q 024523 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID 148 (266)
Q Consensus 81 iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlD 148 (266)
+++|-.+ +++|+||+.. ++.+.++++ .+++.++|.++...+.++..++++.+...+..+-+|.+
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHHHHHHHHhh
Confidence 5667777 8999999985 678877774 68999999999887667778888888777777777875
No 34
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.03 E-value=0.0029 Score=56.00 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=81.4
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceee-ecC-----CCHHH-HHHHHHHHHHHHHHcCcCC
Q 024523 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI-TLP-----YDTQQ-LSKATRETAAIYLACGIDN 149 (266)
Q Consensus 82 ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~-~~~-----~~~e~-ir~~~~~~~~~~lA~GlDp 149 (266)
|++=-|+|++||||..+.+ .-+.++.+ |++|+. ...|+|.. +.. ..+++ .......+.+++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 6667789999999987754 44555554 888753 34444432 211 11323 3334456778888899876
Q ss_pred CceEEEEcccchhhhHHHHH-HhccCCHHHHhchhhHHHhh------hhcCC--CCc---cchhhhchH---HHHHhhhh
Q 024523 150 SKASVFVQSHVRAHVELMWL-LSSATPIGWLNKMIQFKEKS------HKAGG--ENV---GVALLTYPV---LMASDILL 214 (266)
Q Consensus 150 ~Kt~if~qSd~~~~~eL~w~-Ls~~~tv~rL~R~~~~ke~~------~~~g~--~~i---~~g~l~YPv---LQAADIl~ 214 (266)
+ .++.-|+..+.....+. |.. +-..++... ..+++ +-+ +=|..+|.. --+.|=+.
T Consensus 86 d--~~~~es~~~~~~~~~i~~L~~--------~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~ 155 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVELLEE--------LGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE 155 (212)
T ss_pred c--eecchhhhhhHHHHHHHHHHH--------CCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh
Confidence 4 34455553221111111 100 000000000 00000 000 225556652 11122122
Q ss_pred cCCCEE--EecCcchHHHHHHHHHHHHhhhh
Q 024523 215 YQSDFV--PVGEDQKQHLELTRELAERVNYL 243 (266)
Q Consensus 215 l~adlv--pvG~DQ~~hleLaRdiA~r~n~~ 243 (266)
.+.|.+ .+|.||..|+.-.+.+++.++..
T Consensus 156 ~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~ 186 (212)
T cd00671 156 RGADKIIYVVGADHHGHFKRLFAALELLGYD 186 (212)
T ss_pred cCCCEEEEEECCCHHHHHHHHHHHHHHcCCC
Confidence 577887 99999999999999999999864
No 35
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.88 E-value=0.0033 Score=57.58 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=87.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~ 163 (266)
.|||.|||||...++-+|..-+. +.+.++=|=| + ++ .....+....+.+++..+|++.+ .+++||+..+ |
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieD-t---D~--~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~Y 80 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDD-T---NP--EKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQL 80 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecC-C---CC--cccchHHHHHHHHHHHHcCCCCC--CceecccCHHHH
Confidence 57899999999988877754443 4454443333 2 11 12344566677888889999998 6889998543 2
Q ss_pred hHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHH---hhhhcCCCEEEecCcchHHHHHHHHHHHHh
Q 024523 164 VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERV 240 (266)
Q Consensus 164 ~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAA---DIl~l~adlvpvG~DQ~~hleLaRdiA~r~ 240 (266)
.+..-.|- ++-..|.. ...+ + ...+||..|=| |=...+.+.|.-|.|....-..-.-+.+.+
T Consensus 81 ~~~~~~L~--------~~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL 145 (238)
T cd00807 81 YEYAEQLI--------KKGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDAL 145 (238)
T ss_pred HHHHHHHH--------HcCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHc
Confidence 22211110 00001110 0001 1 11234544433 333458999999999998877777788887
Q ss_pred hhhh------CC--CcccccCCCCC
Q 024523 241 NYLY------GG--RKWKKLGGRGG 257 (266)
Q Consensus 241 n~~y------g~--~~~~k~g~~~~ 257 (266)
+... +. ..++|+-|+.+
T Consensus 146 g~~~P~~~~~~hln~~g~kLSKR~~ 170 (238)
T cd00807 146 RLYRPHQWEFSRLNLTYTVMSKRKL 170 (238)
T ss_pred CCCCCceeEEEEECCCCCCccCcCc
Confidence 6532 21 11678888775
No 36
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=96.84 E-value=0.0037 Score=57.26 Aligned_cols=139 Identities=19% Similarity=0.135 Sum_probs=82.1
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccch
Q 024523 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (266)
Q Consensus 83 tGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~ 161 (266)
.|-.|||.+||||...++-+|..-+. +...++=|-|.-.-.. ....+....+.+++..+|++++ +.++||+..
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~----~~~~~~~~~i~~dL~wLGl~~d--~~~~qS~r~ 79 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTK----RPDPEAYDMIPEDLEWLGVKWD--EVVIASDRI 79 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcc----cchHHHHHHHHHHHHHcCCCCC--CccchhccH
Confidence 45678899999999988867753333 3444444555421110 1234445568889999999998 588999853
Q ss_pred h-hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHH---hhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523 162 A-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELA 237 (266)
Q Consensus 162 ~-~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAA---DIl~l~adlvpvG~DQ~~hleLaRdiA 237 (266)
+ |.+..-.|- ++-..|. ....+ +. ...||..+=| |=...+.++|.-|.|-..+-..-.-+.
T Consensus 80 ~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~ 144 (240)
T cd09287 80 ELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIY 144 (240)
T ss_pred HHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHH
Confidence 3 333221110 1111111 01111 11 1234544433 333458999999999999888888888
Q ss_pred HHhhh
Q 024523 238 ERVNY 242 (266)
Q Consensus 238 ~r~n~ 242 (266)
+.++.
T Consensus 145 ~~Lg~ 149 (240)
T cd09287 145 EYFGW 149 (240)
T ss_pred HHcCC
Confidence 88875
No 37
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=96.69 E-value=0.0055 Score=57.84 Aligned_cols=166 Identities=20% Similarity=0.075 Sum_probs=91.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchhh-
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~~- 163 (266)
.|||.|||||+..++-+|..-.. |...++=|=| + ++. ....+....+.+++.-+||+++ -..|+||+-.+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieD-t---D~~--R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y 81 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIED-T---DPE--RCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIY 81 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEET-S---STT--TCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEeccc-c---ccc--cchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHH
Confidence 57899999999998878764444 5455544444 3 211 1234556667778888999987 568889996542
Q ss_pred hHHHHH-------HhccCCHHHHhchhhH------------H---------Hhhhh----------cC-CCC-------c
Q 024523 164 VELMWL-------LSSATPIGWLNKMIQF------------K---------EKSHK----------AG-GEN-------V 197 (266)
Q Consensus 164 ~eL~w~-------Ls~~~tv~rL~R~~~~------------k---------e~~~~----------~g-~~~-------i 197 (266)
.+..-. +.|.+|-.+++..-.- . ++.+. +. +.. .
T Consensus 82 ~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~ 161 (314)
T PF00749_consen 82 QEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDL 161 (314)
T ss_dssp HHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEET
T ss_pred HHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccC
Confidence 221111 4677776665533321 0 11000 00 001 0
Q ss_pred cch-------hhhchHHHHHhhh------------hcCCCEEEecCcchHHHHHHHHHHHHhhhhh---CC------Ccc
Q 024523 198 GVA-------LLTYPVLMASDIL------------LYQSDFVPVGEDQKQHLELTRELAERVNYLY---GG------RKW 249 (266)
Q Consensus 198 ~~g-------~l~YPvLQAADIl------------~l~adlvpvG~DQ~~hleLaRdiA~r~n~~y---g~------~~~ 249 (266)
-.| .+-.++++=+|.. ..+.++|.=|.|-...--.-.-|.+.||... .. ..+
T Consensus 162 v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g 241 (314)
T PF00749_consen 162 VRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG 241 (314)
T ss_dssp TTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS
T ss_pred cceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC
Confidence 011 1223333333333 2478999999999998888888888887652 10 016
Q ss_pred cccCCCCCc
Q 024523 250 KKLGGRGGA 258 (266)
Q Consensus 250 ~k~g~~~~~ 258 (266)
+|+-|+.++
T Consensus 242 ~kLSKR~~~ 250 (314)
T PF00749_consen 242 KKLSKRKGA 250 (314)
T ss_dssp SBSSTTCSH
T ss_pred cEechhhcc
Confidence 788887763
No 38
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.56 E-value=0.0074 Score=60.93 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=58.6
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 81 iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
+.+=| .|||.|||||.-.++-+|..-+. |..++ +=-|++ ++ .....+....+.+++.-+|++++ .+++|
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~i-LRiEDT---Dp--~R~~~e~~~~I~~dL~WLGl~wD--~~~~q 83 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLI-LRFDDT---NP--SKEKAEFEESIIEDLGKIEIKPD--SVSFT 83 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE-EEECCC---CC--CccchHHHHHHHHHHHHhCCCCC--CCccc
Confidence 44444 46699999999988877754444 44444 433433 22 12345566777888888999998 47899
Q ss_pred ccchh-hhHHHHH-------HhccCCHHHHh
Q 024523 158 SHVRA-HVELMWL-------LSSATPIGWLN 180 (266)
Q Consensus 158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~ 180 (266)
|+..+ |.+.+-. +-|.+|-.+++
T Consensus 84 Sdr~~~y~~~a~~Li~~G~AY~C~cs~eel~ 114 (523)
T PLN03233 84 SDYFEPIRCYAIILIEEGLAYMDDTPQEEMK 114 (523)
T ss_pred cccHHHHHHHHHHHHHcCCeEecCCCHHHHH
Confidence 99654 3222222 46777877764
No 39
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=96.55 E-value=0.0096 Score=55.45 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~ 163 (266)
.|||.|||||...++-+|..-+. |..+++=|=|.=. . ....+....+.+++.-+||+.+.- .++||+..+ |
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~----~--R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDP----P--REVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC----C--CCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence 48899999999998878764444 5555555544221 1 123345566777778899998853 678999644 3
Q ss_pred hHHHHH-------HhccCCHHHHhch
Q 024523 164 VELMWL-------LSSATPIGWLNKM 182 (266)
Q Consensus 164 ~eL~w~-------Ls~~~tv~rL~R~ 182 (266)
.+..-. +-|.+|-.++++.
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~ 106 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAA 106 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHH
Confidence 222111 4688888877644
No 40
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.48 E-value=0.014 Score=58.91 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=63.3
Q ss_pred eEEEecCCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHH-HHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVF 155 (266)
Q Consensus 80 ~iytGi~PT--G~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e-~ir~~~~~~~~~~lA~GlDp~Kt~if 155 (266)
.+.+.|.|| |.|||||...++-+|..-+. |.++++=|-|. |.+ ...+....+.+++..+|||+|- ..|
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~i~~~L~WLGl~wDe-~py 75 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-------DKERSTKEAVEAIFSGLKWLGLDWNG-EVI 75 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC-Cce
Confidence 356777777 99999999999888865454 66666666664 111 2334555677788889999873 379
Q ss_pred Ecccchh-hhHHHH-------HHhccCCHHHHhch
Q 024523 156 VQSHVRA-HVELMW-------LLSSATPIGWLNKM 182 (266)
Q Consensus 156 ~qSd~~~-~~eL~w-------~Ls~~~tv~rL~R~ 182 (266)
+||+..+ |.+..- .+-|.+|-.+++..
T Consensus 76 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~ 110 (513)
T PRK14895 76 FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQ 110 (513)
T ss_pred eEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHH
Confidence 9999543 222211 15788888877543
No 41
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.42 E-value=0.0094 Score=58.91 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=58.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~ 163 (266)
.|||.|||||...++-+|..-+. |.++++=|=| +-.. ....+....+.+++.-+||+.| +.|+||+..+ |
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiED-TD~~-----R~~~e~~~~I~~~L~WlGl~wD--e~y~QSeR~~~Y 78 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIED-TDKE-----RNIEGKDKEILEILNLFGISWD--KLVYQSENLKFH 78 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-CCCC-----cCChHHHHHHHHHHHHcCCCCC--CCeehhccHHHH
Confidence 48899999999999888865555 5565555544 2111 1233455667777788999998 4799999543 2
Q ss_pred hHHHHH-------HhccCCHHHHhch
Q 024523 164 VELMWL-------LSSATPIGWLNKM 182 (266)
Q Consensus 164 ~eL~w~-------Ls~~~tv~rL~R~ 182 (266)
.+..-. +-|.+|-.+++.+
T Consensus 79 ~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 79 RQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 222111 5788888877543
No 42
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.39 E-value=0.022 Score=58.04 Aligned_cols=159 Identities=15% Similarity=0.084 Sum_probs=92.6
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
.+...+=.|||.+||||...++-+|..-+. +..+++=|-|. ++.......+....+.+++..+|++++ .+++|
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~wD--~~~~q 175 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKWD--EVVIQ 175 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCCC--CccCc
Confidence 566777788899999999988867653333 44555555554 221112234455677888888999997 57899
Q ss_pred ccchh-hhHHHHH-------HhccCCHHHHhchhh------------------HHHhhh----------hcC-C---CCc
Q 024523 158 SHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSH----------KAG-G---ENV 197 (266)
Q Consensus 158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~R~~~------------------~ke~~~----------~~g-~---~~i 197 (266)
|+..+ |.+..-. +-|.++-.++++.-. |.+|.. ++. + .+.
T Consensus 176 Sdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~ 255 (567)
T PRK04156 176 SDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNP 255 (567)
T ss_pred ccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCC
Confidence 99644 2222211 466666555532210 111100 000 0 000
Q ss_pred c------------------chhhhchHHHHHhh---hhcCCCEEEecCcchHHHHHHHHHHHHhhhh
Q 024523 198 G------------------VALLTYPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYL 243 (266)
Q Consensus 198 ~------------------~g~l~YPvLQAADI---l~l~adlvpvG~DQ~~hleLaRdiA~r~n~~ 243 (266)
+ -+-..||.++=|.. -..+.+++.-|.|...+-..-..+.+.|+..
T Consensus 256 ~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~ 322 (567)
T PRK04156 256 SVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWE 322 (567)
T ss_pred CccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCC
Confidence 0 01123565443322 2347999999999999888888888888753
No 43
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.28 E-value=0.018 Score=59.10 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=58.5
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 81 iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
+.+=| +|||.|||||...++-+|..-+. +..+++=| |++ +|. .+..+....+.+++..+|++.+. .+++|
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRi-EDT---Dp~--R~~~e~~d~IleDL~WLGl~wDe-~~~~Q 125 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRF-DDT---NPS--KEKEHFEQAILDDLATLGVSWDV-GPTYS 125 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEE-cCC---CCc--ccCHHHHHHHHHHHHHCCCCCCC-ceeec
Confidence 44444 56699999999988878764444 44444433 333 221 23456677788888899999874 37889
Q ss_pred ccchh-hhHHHHH-------HhccCCHHHHh
Q 024523 158 SHVRA-HVELMWL-------LSSATPIGWLN 180 (266)
Q Consensus 158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~ 180 (266)
|+..+ |.+..-. +.|.++-.+++
T Consensus 126 Sdr~d~y~e~a~~Li~~G~AY~c~cs~eei~ 156 (601)
T PTZ00402 126 SDYMDLMYEKAEELIKKGLAYCDKTPREEMQ 156 (601)
T ss_pred cccHHHHHHHHHHHHHcCCEEEecCCHHHHH
Confidence 99654 2222211 46777766553
No 44
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=96.27 E-value=0.014 Score=59.42 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=58.3
Q ss_pred eEEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 024523 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (266)
Q Consensus 80 ~iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~ 156 (266)
.+.+=| .|||.|||||...++-+|..-+. +..+++=+=| + +|. ....+....+.+++..+|++++ .+++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidD-T---Dp~--R~~~e~~~~I~edL~wLGi~~d--~~~~ 164 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDD-T---DPR--RVKPEAYDMILEDLDWLGVKGD--EVVY 164 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCc-C---Ccc--cccHHHHHHHHHHHHHcCCCCC--cccc
Confidence 455555 45699999999988867653333 4444444444 2 221 2344566777888889999997 5789
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHh
Q 024523 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (266)
Q Consensus 157 qSd~~~-~~eL~w~-------Ls~~~tv~rL~ 180 (266)
||+..+ +.+..-. +-|.++-.+++
T Consensus 165 qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 165 QSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 999644 3222211 46777776664
No 45
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.015 Score=58.19 Aligned_cols=171 Identities=21% Similarity=0.200 Sum_probs=99.4
Q ss_pred EEEecC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 81 iytGi~--PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
|.+=|- |||.+||||...++-+|..-+. |.++++=|=|. ++. ....+....+.+++.-+||+++.. +|+|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT----D~~--R~~~e~~~~I~~~L~WLGl~wde~-~~~Q 82 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT----DPE--RETPEAEDAILEDLEWLGLDWDEG-PYYQ 82 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--CCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence 445554 5699999999998888865555 56666555442 221 123345556666777899999864 8999
Q ss_pred ccchh-hhHHH-HH------HhccCCHHHHhchh-----------hHH---------HhhhhcCC----------C----
Q 024523 158 SHVRA-HVELM-WL------LSSATPIGWLNKMI-----------QFK---------EKSHKAGG----------E---- 195 (266)
Q Consensus 158 Sd~~~-~~eL~-w~------Ls~~~tv~rL~R~~-----------~~k---------e~~~~~g~----------~---- 195 (266)
|+..+ |.+.. ++ +-|.+|-.+|+.+- .|. ++....+. +
T Consensus 83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~ 162 (472)
T COG0008 83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP 162 (472)
T ss_pred hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence 99644 22221 22 46777776555441 110 11111000 0
Q ss_pred -----Cccchhhhch------HHHHHhhhh------------cCCCEEEecCcchHHHHHHHHHHHHhhhhh---C----
Q 024523 196 -----NVGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLY---G---- 245 (266)
Q Consensus 196 -----~i~~g~l~YP------vLQAADIl~------------l~adlvpvG~DQ~~hleLaRdiA~r~n~~y---g---- 245 (266)
+.-.|.+..+ +++-+|++. .+.++|.-|.|+..+-..-+-+.+.||... .
T Consensus 163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~l 242 (472)
T COG0008 163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPL 242 (472)
T ss_pred CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeee
Confidence 0112333333 333444443 268899999999998888888888887543 1
Q ss_pred --CCcccccCCCCCc
Q 024523 246 --GRKWKKLGGRGGA 258 (266)
Q Consensus 246 --~~~~~k~g~~~~~ 258 (266)
...++|+-||.+.
T Consensus 243 i~~~~g~kLSKr~~~ 257 (472)
T COG0008 243 LLNEDGKKLSKRKGA 257 (472)
T ss_pred eecCCCCeecCccCc
Confidence 0115677777763
No 46
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.14 E-value=0.025 Score=57.51 Aligned_cols=93 Identities=14% Similarity=0.037 Sum_probs=57.5
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 81 iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
+.+=| .|||.|||||.-.++-+|..-+. +..++ +=-|++ ++. ....+....+.+++.-+|++++- .+++|
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~i-LRieDT---d~~--r~~~e~~~~I~~dL~wLGi~~d~-~~~~q 102 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCN-LRFDDT---NPE--KEDQEYVDSIKEDVRWLGFDWSG-ELRYA 102 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE-EEECCC---CCC--cCChHHHHHHHHHHHHcCCCCCC-Cceee
Confidence 44444 56699999999888877754444 44444 433443 221 13445666777788889999842 47889
Q ss_pred ccchh-hhHHHHH-------HhccCCHHHHh
Q 024523 158 SHVRA-HVELMWL-------LSSATPIGWLN 180 (266)
Q Consensus 158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~ 180 (266)
|+..+ +.+.+.. +-|.+|-.+++
T Consensus 103 S~r~~~~y~~a~~Li~~G~AY~c~cs~eei~ 133 (554)
T PRK05347 103 SDYFDQLYEYAVELIKKGKAYVDDLSAEEIR 133 (554)
T ss_pred ecCHHHHHHHHHHHHHcCCEeeCCCCHHHHH
Confidence 99654 4333332 46777766553
No 47
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=96.11 E-value=0.021 Score=57.56 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=53.2
Q ss_pred CceEEEecCCCCcchhhhHHHHHHH--HHH-Hhc-cCcE-EEEEecce---------------eeec------CC----C
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIA-LQN-SYET-LFFIVDLH---------------AITL------PY----D 127 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k--~~~-LQ~-g~~v-~ilIADlh---------------A~~~------~~----~ 127 (266)
+..+=||+.|||.+||||+..++.. +.+ +.. |.++ +|+.+|.| .+++ |. .
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 6789999999999999998776632 333 344 7886 67899999 2222 11 1
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCceEEEEcccc
Q 024523 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (266)
Q Consensus 128 ~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~ 160 (266)
..-..++-....+.+-.+||+ .+|+.+++.
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~ 128 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQ 128 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHh
Confidence 222333444555566668986 578888874
No 48
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=96.03 E-value=0.021 Score=58.18 Aligned_cols=94 Identities=13% Similarity=-0.000 Sum_probs=58.1
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
.+.=..=.|||.|||||...++-+|..-+. |..+++=| |++ ++. ....+....+.+++.-+|++++. +++|
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRi-EDT---Dp~--r~~~e~~~~I~~dL~wLGi~~D~--~~~q 123 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRY-DDT---NPE--TEEQVYIDAIMEMVKWMGWKPDW--VTFS 123 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEE-CCC---Ccc--ccChHHHHHHHHHHHHcCCCCCC--CCcC
Confidence 333344456799999999888877754444 54554444 333 221 23445667778888889999984 5689
Q ss_pred ccchh-hhHHHHH-------HhccCCHHHHh
Q 024523 158 SHVRA-HVELMWL-------LSSATPIGWLN 180 (266)
Q Consensus 158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~ 180 (266)
|++.+ +.+.+-. +-|.++-.+++
T Consensus 124 S~y~~~~ye~A~~Li~~G~AY~C~cs~eei~ 154 (574)
T PTZ00437 124 SDYFDQLHEFAVQLIKDGKAYVDHSTPDELK 154 (574)
T ss_pred chhHHHHHHHHHHHHHcCCEEEcCCCHHHHH
Confidence 98755 3232222 36777766654
No 49
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=95.99 E-value=0.024 Score=56.32 Aligned_cols=88 Identities=23% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~ 163 (266)
.|||.|||||...++-+|..-.. |.++++=|=|.= . .....+....+.+++..+|++.| ++|+||+..+ |
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD-~-----~Rs~~~~~~~I~e~L~wLGI~~D--e~y~QSer~~~y 81 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTD-L-----ERSKQEYADAIAEDLKWLGINWD--RTFRQSDRFDRY 81 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCC-c-----ccchHHHHHHHHHHHHHcCCCCC--ccccHHHHHHHH
Confidence 47799999999999888865444 555555555532 1 11234555677778888999988 4799998533 2
Q ss_pred hHHHH-------HHhccCCHHHHhc
Q 024523 164 VELMW-------LLSSATPIGWLNK 181 (266)
Q Consensus 164 ~eL~w-------~Ls~~~tv~rL~R 181 (266)
.+..- .+-|.+|-.+++.
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~ 106 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELEL 106 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHH
Confidence 21111 1467888777753
No 50
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=95.90 E-value=0.035 Score=56.14 Aligned_cols=88 Identities=10% Similarity=-0.024 Sum_probs=55.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~ 163 (266)
.|||.|||||.-.++-+|..-+. +..+++=| |++ ++. ....+....+.+++.-+|++++ -.+++||+..+ |
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRi-eDT---d~~--r~~~e~~~~I~~dL~wLG~~~d-~~~~~qS~~~~~~ 80 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRF-DDT---NPV--KEDPEYVESIKRDVEWLGFKWE-GKIRYSSDYFDEL 80 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEE-cCC---Ccc--cCChHHHHHHHHHHHHcCCCCC-CCceEccccHHHH
Confidence 58899999999888877754444 44444444 433 221 2334566677778888999984 23678999654 3
Q ss_pred hHHHHH-------HhccCCHHHHh
Q 024523 164 VELMWL-------LSSATPIGWLN 180 (266)
Q Consensus 164 ~eL~w~-------Ls~~~tv~rL~ 180 (266)
.+.+-. +-|.++-.+++
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~ 104 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIR 104 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHH
Confidence 332221 46777766554
No 51
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=95.88 E-value=0.029 Score=55.92 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=57.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~ 163 (266)
.|||.|||||...++-+|..-.. |.++++=|=| + ++. ....+....+.+++.-+||+.|- ..|+||+..+ |
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD-t---D~~--R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y 81 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIED-T---DLE--RNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY 81 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-C---CCc--cCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence 47899999999998888864444 5555554544 3 211 12334566777788889999873 4899999543 3
Q ss_pred hHHHHH-------HhccCCHHHHhc
Q 024523 164 VELMWL-------LSSATPIGWLNK 181 (266)
Q Consensus 164 ~eL~w~-------Ls~~~tv~rL~R 181 (266)
.+..-. +-|.+|-.++++
T Consensus 82 ~~~~~~L~~~g~aY~C~ct~~~l~~ 106 (470)
T TIGR00464 82 KKYAKELLEEGLAYRCYCSKERLER 106 (470)
T ss_pred HHHHHHHHHcCCEEecCCChHHHHH
Confidence 222211 467788777653
No 52
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=95.86 E-value=0.025 Score=58.50 Aligned_cols=86 Identities=21% Similarity=0.352 Sum_probs=56.3
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecce-eeec--C-----CCH-HHHHHHHHHHHHHH
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLH-AITL--P-----YDT-QQLSKATRETAAIY 142 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlh-A~~~--~-----~~~-e~ir~~~~~~~~~~ 142 (266)
++..|-+++ -|+|.+||||..+.+ .-+.++++ |++|+++.++++ ..-. . .++ +...+++..+.+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 456777787 699999999987755 33445554 889877765544 3211 0 244 45667778889999
Q ss_pred HHcCcCCCceEEEEcccchhhhH
Q 024523 143 LACGIDNSKASVFVQSHVRAHVE 165 (266)
Q Consensus 143 lA~GlDp~Kt~if~qSd~~~~~e 165 (266)
.++|++++. |....-++|.+
T Consensus 82 ~~l~i~~d~---f~rtt~~~h~~ 101 (673)
T PRK00133 82 AGFGISFDN---YGSTHSEENRE 101 (673)
T ss_pred HHhCCCCCC---CccCCcHHHHH
Confidence 999998762 44444344533
No 53
>PLN02907 glutamate-tRNA ligase
Probab=95.69 E-value=0.034 Score=58.24 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=88.6
Q ss_pred eEEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 024523 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (266)
Q Consensus 80 ~iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~ 156 (266)
.+.+=| +|||.|||||.-.++-+|..-+. |..+++=| |++ +|. .+..+....+.+++.-+|+++++ +++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~-eDT---dp~--r~~~e~~~~I~~dl~wLG~~~d~--~~~ 284 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRF-DDT---NPS--KESDEFVENILKDIETLGIKYDA--VTY 284 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEe-cCC---CCC--cCChHHHHHHHHHHHHcCCCCCC--ccc
Confidence 355555 45699999999888877754333 44444433 443 221 12335566677778889999984 689
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHhchh-----------h-------HHHhhhh-c-C------------CCC
Q 024523 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSHK-A-G------------GEN 196 (266)
Q Consensus 157 qSd~~~-~~eL~w~-------Ls~~~tv~rL~R~~-----------~-------~ke~~~~-~-g------------~~~ 196 (266)
||+..+ |.+..-. +.|.++..+++... + |.+|... + + ..+
T Consensus 285 qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n 364 (722)
T PLN02907 285 TSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPN 364 (722)
T ss_pred ccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCC
Confidence 999654 3222211 35667766554221 0 1111100 0 0 001
Q ss_pred ccchh-h-----------------hchHHHHHhhhh---cCCCEEEecCcchHHHHHHHHHHHHhhhh
Q 024523 197 VGVAL-L-----------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYL 243 (266)
Q Consensus 197 i~~g~-l-----------------~YPvLQAADIl~---l~adlvpvG~DQ~~hleLaRdiA~r~n~~ 243 (266)
.++.- + .||..+=|-.+- .+.+++..|.|...+-..-.-+.+.++..
T Consensus 365 ~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~ 432 (722)
T PLN02907 365 KSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLR 432 (722)
T ss_pred CCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCC
Confidence 11111 1 155544443332 36899999999999888888888888743
No 54
>PLN02859 glutamine-tRNA ligase
Probab=95.59 E-value=0.041 Score=58.01 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=55.3
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh
Q 024523 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (266)
Q Consensus 84 Gi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~ 162 (266)
.=+|||.|||||.-.++-+|..-+. |..+++=+ |++ +|. .+..+....+.+++.-+|++++ .+++||++.+
T Consensus 270 aPsPtG~LHiGharaallN~~~Ar~~~G~~~LRi-eDT---dp~--r~~~e~~~~I~edL~WLG~~~d--~~~~qSd~f~ 341 (788)
T PLN02859 270 PPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRF-DDT---NPE--AEKKEYIDHIEEIVEWMGWEPF--KITYTSDYFQ 341 (788)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEe-cCC---CCC--ccchHHHHHHHHHHHHcCCCCC--CcccccHhHH
Confidence 3356799999999888777754444 44444433 443 221 2344566667777788999997 4789999763
Q ss_pred -hhHHHHH-------HhccCCHHHHh
Q 024523 163 -HVELMWL-------LSSATPIGWLN 180 (266)
Q Consensus 163 -~~eL~w~-------Ls~~~tv~rL~ 180 (266)
+.+.+-. +-|.++-.+++
T Consensus 342 ~~Y~~A~~Li~~G~AY~C~ct~eei~ 367 (788)
T PLN02859 342 ELYELAVELIRRGHAYVDHQTPEEIK 367 (788)
T ss_pred HHHHHHHHHHHcCCeEeccCCHHHHH
Confidence 3332222 46777766553
No 55
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.49 E-value=0.057 Score=56.98 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=56.3
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 81 iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
+.+=| .|||.|||||.-.++-+|..-+. +..+++=| |++ ++. ....+....+.+++.-+|++++. .+++|
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~-eDT---d~~--r~~~e~~~~I~~dl~wLG~~wd~-~~~~q 104 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRM-DDT---NPE--TEDTEYVEAIKDDVRWLGFDWGE-HLYYA 104 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEe-CCC---CCC--cCChHHHHHHHHHHHHcCCCCCC-CceEe
Confidence 44544 56699999999888867754443 44444433 333 221 13445666777788889999763 36889
Q ss_pred ccchh-hhHHHH-------HHhccCCHHHHh
Q 024523 158 SHVRA-HVELMW-------LLSSATPIGWLN 180 (266)
Q Consensus 158 Sd~~~-~~eL~w-------~Ls~~~tv~rL~ 180 (266)
|+..+ |.+..- .+-|.++-.+++
T Consensus 105 S~~~~~y~~~a~~Li~~G~aY~c~cs~eei~ 135 (771)
T PRK14703 105 SDYFERMYAYAEQLIKMGLAYVDSVSEEEIR 135 (771)
T ss_pred ecCHHHHHHHHHHHHHcCCcccCcCCHHHHH
Confidence 99654 222211 146777766553
No 56
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.04 Score=56.14 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=54.2
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeeec--C-----CCHH-HHHHHHHHHHHHHHHcCcCCCce
Q 024523 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL--P-----YDTQ-QLSKATRETAAIYLACGIDNSKA 152 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~--~-----~~~e-~ir~~~~~~~~~~lA~GlDp~Kt 152 (266)
-|.|.+||||....| .-|.++|. |++++++ =.|-|..-. . .+|+ -+.++..+...+|.+++|+-|
T Consensus 15 Y~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD-- 92 (558)
T COG0143 15 YPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFD-- 92 (558)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc--
Confidence 478999999988766 44777877 8998665 455665422 1 2554 467777889999999998754
Q ss_pred EEEEcccchhhhHH
Q 024523 153 SVFVQSHVRAHVEL 166 (266)
Q Consensus 153 ~if~qSd~~~~~eL 166 (266)
.|..+.-++|.++
T Consensus 93 -~F~rTt~~~h~~~ 105 (558)
T COG0143 93 -NFIRTTSPEHKEL 105 (558)
T ss_pred -ccccCCCHHHHHH
Confidence 5555555556544
No 57
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=95.42 E-value=0.067 Score=53.47 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=90.4
Q ss_pred EEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecceeeecC------CCHHHH-HHHHHHHHHHHHHcCc
Q 024523 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDLHAITLP------YDTQQL-SKATRETAAIYLACGI 147 (266)
Q Consensus 81 iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i--lIADlhA~~~~------~~~e~i-r~~~~~~~~~~lA~Gl 147 (266)
-|+|--|+|++|+||.-+++ .-+.++.+ |++|.. -+.|+-..+.. ..++++ ......+.+++..+|+
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36688999999999987755 34555544 888743 36666433321 123333 3444667888889998
Q ss_pred CCCceEEEEcccchhhhHHHHHHhccCCHHHHhch-hhH-HHhh------hhcCCC-C----ccchhhhchHHHHHhhhh
Q 024523 148 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEKS------HKAGGE-N----VGVALLTYPVLMASDILL 214 (266)
Q Consensus 148 Dp~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~-~~~-ke~~------~~~g~~-~----i~~g~l~YPvLQAADIl~ 214 (266)
..+ .+++.|+........+.+. +|... ..| .... ..++++ . -+=|..+|.. .||-+
T Consensus 196 ~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~t---~Dia~ 264 (507)
T PRK01611 196 HFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYFT---RDIAY 264 (507)
T ss_pred eee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccchH---HHHHH
Confidence 774 3455554311101111110 11110 001 0000 011100 0 0224455633 35544
Q ss_pred c-------CCCEEEecCcchHHHHHHHHHHHHhhhhhC-CC-------------cccccCCCCCc
Q 024523 215 Y-------QSDFVPVGEDQKQHLELTRELAERVNYLYG-GR-------------KWKKLGGRGGA 258 (266)
Q Consensus 215 l-------~adlvpvG~DQ~~hleLaRdiA~r~n~~yg-~~-------------~~~k~g~~~~~ 258 (266)
. +.-+-.+|.||..|+.-...+++.+|+.-. .+ .++||-||.|.
T Consensus 265 ~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn 329 (507)
T PRK01611 265 HLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN 329 (507)
T ss_pred HHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc
Confidence 2 344459999999999999999999985311 11 15689999884
No 58
>PLN02627 glutamyl-tRNA synthetase
Probab=95.41 E-value=0.047 Score=55.39 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=60.2
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce-----
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt----- 152 (266)
.++=.-=-|||.|||||...++-+|..-+. |.++++=|=| +-.. ....+....+.+++.-+|||.|..
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIED-TD~~-----R~~~e~~~~I~~~L~WLGl~wDegp~~gg 119 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-TDLA-----RSTKESEEAVLRDLKWLGLDWDEGPDVGG 119 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCc-CCCC-----CCChHHHHHHHHHHHHcCCCCCcCcccCC
Confidence 344344456799999999999988875555 5555555544 3111 123345566777777899998753
Q ss_pred --EEEEcccchh-hhHHHH-------HHhccCCHHHHhc
Q 024523 153 --SVFVQSHVRA-HVELMW-------LLSSATPIGWLNK 181 (266)
Q Consensus 153 --~if~qSd~~~-~~eL~w-------~Ls~~~tv~rL~R 181 (266)
--|+||+-.+ |.+..- .+-|.+|-.+++.
T Consensus 120 ~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~ 158 (535)
T PLN02627 120 EYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEA 158 (535)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHH
Confidence 2589999543 222211 1577788777653
No 59
>PLN02224 methionine-tRNA ligase
Probab=94.95 E-value=0.13 Score=53.08 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=51.1
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeee--cC-----CCH-HHHHHHHHHHHHHHH
Q 024523 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAIT--LP-----YDT-QQLSKATRETAAIYL 143 (266)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~--~~-----~~~-e~ir~~~~~~~~~~l 143 (266)
++.|-++. -|+|.+||||..+.+ .-+.+++. |++|++. =.|.|..- .. .++ +.+++++..+.+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 46677777 778999999988755 33455554 8888655 56777631 10 133 566777788888999
Q ss_pred HcCcCCC
Q 024523 144 ACGIDNS 150 (266)
Q Consensus 144 A~GlDp~ 150 (266)
++|++++
T Consensus 150 ~l~I~~D 156 (616)
T PLN02224 150 DLDIAYD 156 (616)
T ss_pred HcCCCCC
Confidence 9999887
No 60
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=94.92 E-value=0.094 Score=52.40 Aligned_cols=168 Identities=20% Similarity=0.165 Sum_probs=98.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce------EEEEcc
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA------SVFVQS 158 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt------~if~qS 158 (266)
.|||.|||||...++-+|..-.. |.++++=|=| +-.. ....+....+.+++.-+||+.|.- -.|+||
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieD-tD~~-----R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS 85 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIED-TDQE-----RSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQS 85 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-CCCC-----CCChHHHHHHHHHHHHCCCCCCCCCccCCCCceehh
Confidence 46799999999988888864444 5555544444 3211 123445566777778899998743 158999
Q ss_pred cchh-hhHHHH-------HHhccCCHHHHhchhh-------------------HHHhhhhc--CC---------C--C--
Q 024523 159 HVRA-HVELMW-------LLSSATPIGWLNKMIQ-------------------FKEKSHKA--GG---------E--N-- 196 (266)
Q Consensus 159 d~~~-~~eL~w-------~Ls~~~tv~rL~R~~~-------------------~ke~~~~~--g~---------~--~-- 196 (266)
+..+ |.+..- .+-|.+|-.+|+..-. -.++.+.. |. + .
T Consensus 86 ~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~ 165 (476)
T PRK01406 86 ERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVV 165 (476)
T ss_pred cCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceE
Confidence 9543 222221 1578888877753311 00000000 00 0 0
Q ss_pred ----------ccchhhh---------chHHHHHhhhh---cCCCEEEecCcchHHHHHHHHHHHHhhhhh---CC-----
Q 024523 197 ----------VGVALLT---------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLY---GG----- 246 (266)
Q Consensus 197 ----------i~~g~l~---------YPvLQAADIl~---l~adlvpvG~DQ~~hleLaRdiA~r~n~~y---g~----- 246 (266)
.+...+- ||..+.||++- .+.|+|..|.||..+.-.-..+.+.+|... ..
T Consensus 166 ~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~ 245 (476)
T PRK01406 166 FDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLIL 245 (476)
T ss_pred EEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeee
Confidence 0001111 45555666643 478999999999999999999999998431 10
Q ss_pred -CcccccCCCCCce
Q 024523 247 -RKWKKLGGRGGAI 259 (266)
Q Consensus 247 -~~~~k~g~~~~~i 259 (266)
..++||-||.+.+
T Consensus 246 ~~~g~klSKR~g~~ 259 (476)
T PRK01406 246 GPDGKKLSKRHGAT 259 (476)
T ss_pred CCCCCcccCcCCcc
Confidence 0156787877743
No 61
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=94.68 E-value=0.083 Score=51.34 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=45.9
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEE-EEEecceeeecC-------CCHH-HHHHHHHHHHHHHHHcCcCCCce
Q 024523 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETL-FFIVDLHAITLP-------YDTQ-QLSKATRETAAIYLACGIDNSKA 152 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~-ilIADlhA~~~~-------~~~e-~ir~~~~~~~~~~lA~GlDp~Kt 152 (266)
-|.|.|||||..+.+ .-+.++++ |++++ +.=.|.|..-.. .+++ -+.++...+.+.+.++||+.+
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D-- 86 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD-- 86 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S--
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc--
Confidence 478999999987765 23444444 88875 456788876431 2554 456777888999999999987
Q ss_pred EEEEcccchhhhH
Q 024523 153 SVFVQSHVRAHVE 165 (266)
Q Consensus 153 ~if~qSd~~~~~e 165 (266)
.|..+.-.+|.+
T Consensus 87 -~F~rTt~~~h~~ 98 (391)
T PF09334_consen 87 -RFIRTTDDRHKE 98 (391)
T ss_dssp -EEEETTSHHHHH
T ss_pred -ceeCCCCHHHHH
Confidence 355554444533
No 62
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.29 E-value=1 Score=40.36 Aligned_cols=72 Identities=11% Similarity=-0.000 Sum_probs=46.9
Q ss_pred CceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeeec-C------CCH-HHHHHHHHHHHHHHHH
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-P------YDT-QQLSKATRETAAIYLA 144 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlhA~~~-~------~~~-e~ir~~~~~~~~~~lA 144 (266)
.....+|-=|-|.+||||.-..+ .-+.++++ |++|++.. .|.|..=. . .++ +-.+++...+.+++.+
T Consensus 21 ~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~ 100 (213)
T cd00672 21 VTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKA 100 (213)
T ss_pred ceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34556777788999999976654 33444444 78886654 35553311 0 244 4456677788889999
Q ss_pred cCcCC
Q 024523 145 CGIDN 149 (266)
Q Consensus 145 ~GlDp 149 (266)
+|+.+
T Consensus 101 l~i~~ 105 (213)
T cd00672 101 LNVLP 105 (213)
T ss_pred cCCCC
Confidence 99986
No 63
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=94.10 E-value=0.2 Score=49.73 Aligned_cols=73 Identities=8% Similarity=-0.004 Sum_probs=48.8
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee-ecC------CCHH-HHHHHHHHHHHHHH
Q 024523 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-TLP------YDTQ-QLSKATRETAAIYL 143 (266)
Q Consensus 78 ~~~iy-tGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~-~~~------~~~e-~ir~~~~~~~~~~l 143 (266)
...+| +|--|.|.+||||..+.+ .-+.++++ |++|++..+ |.|.- +.. .+++ -.++++..+.+++.
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~ 102 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMD 102 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45666 899999999999987655 33555554 899987765 44421 110 2343 35566778888999
Q ss_pred HcCc-CCC
Q 024523 144 ACGI-DNS 150 (266)
Q Consensus 144 A~Gl-Dp~ 150 (266)
++|+ .|+
T Consensus 103 ~Lgi~~~d 110 (463)
T PRK00260 103 ALNVLPPD 110 (463)
T ss_pred HcCCCCCC
Confidence 9999 454
No 64
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=94.07 E-value=0.15 Score=51.33 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=47.2
Q ss_pred eEEEecCCC--CcchhhhHHHH-H--HHHHHHhc--cCcEEEEE-ecceeeec-------CCCH-HHHHHHHHHHHHHHH
Q 024523 80 RIVSGVQPT--GSIHLGNYLGA-I--KNWIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (266)
Q Consensus 80 ~iytGi~PT--G~lHLGh~ig~-i--~k~~~LQ~--g~~v~ilI-ADlhA~~~-------~~~~-e~ir~~~~~~~~~~l 143 (266)
.+.+.-=|+ |.+||||..+. + .-+.++++ |++|++.. .|.|..-. ..++ +-.++++..+.+++.
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 84 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK 84 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 455555566 89999998865 3 23444443 88886654 46664322 0244 445777888899999
Q ss_pred HcCcCCCc
Q 024523 144 ACGIDNSK 151 (266)
Q Consensus 144 A~GlDp~K 151 (266)
++|++++.
T Consensus 85 ~l~i~~d~ 92 (556)
T PRK12268 85 KLGISYDL 92 (556)
T ss_pred HcCCcCCC
Confidence 99999873
No 65
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=94.03 E-value=0.075 Score=51.48 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=42.8
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHH---HHHHhc-cCcE-EEEEecceeee----------------c-CC----CHH
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAIT----------------L-PY----DTQ 129 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k---~~~LQ~-g~~v-~ilIADlhA~~----------------~-~~----~~e 129 (266)
+.+..+-+|+.|||.+||||+--+++. ...|++ |.++ +|+.+|+.-=+ + |. +|.
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 346789999999999999998655522 334777 7776 67788865333 2 10 111
Q ss_pred -----HHHHHHHHHHHHHHHcCcCCCceEEEEcccc
Q 024523 130 -----QLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (266)
Q Consensus 130 -----~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~ 160 (266)
-..++-....+.+-.+|+++ +++.|++.
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~ 134 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEM 134 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT------EEEECCCC
T ss_pred CCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHh
Confidence 12333444455555679865 78888884
No 66
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=93.64 E-value=0.13 Score=48.21 Aligned_cols=80 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeecC-------CCH-HHHHHHHHHHHHHHHHcCcCCCceE
Q 024523 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITLP-------YDT-QQLSKATRETAAIYLACGIDNSKAS 153 (266)
Q Consensus 87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~~-------~~~-e~ir~~~~~~~~~~lA~GlDp~Kt~ 153 (266)
|+|.+||||..+.+ .-+.++++ |++|.+ .-.|.|..-.. .++ +-.+++..++.+++.++|+.++ ..
T Consensus 11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d-~~ 89 (314)
T cd00812 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD-WR 89 (314)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee-cc
Confidence 67999999988755 22444444 888744 45666643210 133 3356666778888899999775 22
Q ss_pred EEEcccchhhhHHH
Q 024523 154 VFVQSHVRAHVELM 167 (266)
Q Consensus 154 if~qSd~~~~~eL~ 167 (266)
.+..+..++|.+..
T Consensus 90 ~~~~t~~~~~~~~v 103 (314)
T cd00812 90 REFTTCDPEYYKFT 103 (314)
T ss_pred cccccCCHHHHHHH
Confidence 33334455554444
No 67
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=93.55 E-value=0.23 Score=52.66 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=49.8
Q ss_pred CceEEEecCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeecC-------CC-HHHHHHHHHHHHHHH
Q 024523 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITLP-------YD-TQQLSKATRETAAIY 142 (266)
Q Consensus 78 ~~~iytGi~PT--G~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~~-------~~-~e~ir~~~~~~~~~~ 142 (266)
++++..|. |+ |.+|+||..+.+ .-+.++|. |++|.+..+ |.|.+-.- .+ .+...+++.++.+++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 67888886 76 999999988755 23555665 888866554 55544220 13 355677788889999
Q ss_pred HHcCcCCC
Q 024523 143 LACGIDNS 150 (266)
Q Consensus 143 lA~GlDp~ 150 (266)
.++|+..|
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99999655
No 68
>PLN02610 probable methionyl-tRNA synthetase
Probab=93.42 E-value=0.15 Score=54.18 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=54.3
Q ss_pred CceEEEec-CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-cceeeecC-------CCH-HHHHHHHHHHHHHH
Q 024523 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHAITLP-------YDT-QQLSKATRETAAIY 142 (266)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~ig-~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~~-------~~~-e~ir~~~~~~~~~~ 142 (266)
++.|-+.+ -|+|.+||||..+ .+ .-+.+++. |++|+++.+ |-|..-.. .++ +-+.++...+.+.|
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44444443 3679999999886 34 34666666 889877655 55655321 244 44566667788899
Q ss_pred HHcCcCCCceEEEEcccchhhhHHH
Q 024523 143 LACGIDNSKASVFVQSHVRAHVELM 167 (266)
Q Consensus 143 lA~GlDp~Kt~if~qSd~~~~~eL~ 167 (266)
.++||+.| .|..+.-++|.+..
T Consensus 98 ~~l~i~~D---~f~rT~~~~h~~~v 119 (801)
T PLN02610 98 DWFDISFD---KFGRTSTPQQTEIC 119 (801)
T ss_pred HHcCCccc---cCccCCCHHHHHHH
Confidence 99999877 23333344554443
No 69
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=93.11 E-value=0.17 Score=50.60 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=41.8
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeeec-------CCCHH-HHHHHHHHHHHHHHHcCcCCCc
Q 024523 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~-------~~~~e-~ir~~~~~~~~~~lA~GlDp~K 151 (266)
|+|.+||||..+.+ .-+.+.++ |++|.+. =.|.|..-. ..+++ -..++...+.+++.++|++++.
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 78999999987655 23444444 8888655 445553321 02443 3455567788899999998763
No 70
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=92.76 E-value=0.17 Score=50.06 Aligned_cols=65 Identities=15% Similarity=0.320 Sum_probs=41.7
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeeecC-------CCH-HHHHHHHHHHHHHHHHcCcCCC
Q 024523 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITLP-------YDT-QQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~~-------~~~-e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
-|+|.+||||..+.+ .-+.+.++ |++|.+. -.|.|..-.. .++ +-.+++..++.+++.++|++++
T Consensus 11 ~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 356899999977655 33445554 8887654 4555643110 133 4456666778889999999866
No 71
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=92.34 E-value=0.25 Score=46.34 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=41.9
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeeecC-------CCHHH-HHHHHHHHHHHHHHcCcCCCc
Q 024523 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITLP-------YDTQQ-LSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~~-------~~~e~-ir~~~~~~~~~~lA~GlDp~K 151 (266)
|+|.+||||..+.+ .-+.++++ |++|++. =.|.|..-.. .++++ .+++...+.+++.++|++++.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 45999999988755 23444444 8887654 4566644220 24443 455567788889999998763
No 72
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=92.18 E-value=0.17 Score=47.03 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEE-EEEecceeeecC------C--------------C-HHHHHHHHHHHHH
Q 024523 87 PTGSIHLGNYLGAI--KNWIALQN--SYETL-FFIVDLHAITLP------Y--------------D-TQQLSKATRETAA 140 (266)
Q Consensus 87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~-ilIADlhA~~~~------~--------------~-~e~ir~~~~~~~~ 140 (266)
|+|.+||||+.+.+ .-+.++++ |++|. +.-.|.|..-.. . + .+-++++...+.+
T Consensus 11 ~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (312)
T cd00668 11 ANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKE 90 (312)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999988744 22333333 78874 445577764221 0 1 1223444455677
Q ss_pred HHHHcCcCCC
Q 024523 141 IYLACGIDNS 150 (266)
Q Consensus 141 ~~lA~GlDp~ 150 (266)
++.++|++.+
T Consensus 91 ~l~~lgI~~D 100 (312)
T cd00668 91 DFRRLGISYD 100 (312)
T ss_pred HHHHhCcccc
Confidence 7888898654
No 73
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=92.08 E-value=0.34 Score=49.91 Aligned_cols=64 Identities=16% Similarity=0.299 Sum_probs=42.9
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeecC-------CCH-HHHHHHHHHHHHHHHHcCcCCC
Q 024523 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITLP-------YDT-QQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~~-------~~~-e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
|+|.+||||..+.+ .-+.++++ |+++++ .-.|.|..-.. .++ +-+.++...+.+++.++|++++
T Consensus 15 ~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D 91 (648)
T PRK12267 15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD 91 (648)
T ss_pred CCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 56999999987755 33555554 888755 46677754221 244 3455666778889999999876
No 74
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.55 E-value=0.38 Score=45.63 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=24.0
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceee
Q 024523 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI 122 (266)
Q Consensus 87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~ 122 (266)
|+|.+||||..+.+ .-+.++++ |++|.+ .-.|.|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 56999999988754 33445554 888854 45566554
No 75
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=91.37 E-value=0.24 Score=49.95 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=52.8
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHH---HHHHhc-cCcE-EEEEecceeeec--CC---CHHHHHH-------------
Q 024523 77 VKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSK------------- 133 (266)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~ig~i~k---~~~LQ~-g~~v-~ilIADlhA~~~--~~---~~e~ir~------------- 133 (266)
...++=||+.|||.+||||+-=.++. ...|.+ |+++ +|+++|.+.=+. |. +++.+.+
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 56789999999999999997533321 223555 7876 788999987665 21 2333332
Q ss_pred -----HHHHH----HHHHHHcCcCCCceEEEEcccc
Q 024523 134 -----ATRET----AAIYLACGIDNSKASVFVQSHV 160 (266)
Q Consensus 134 -----~~~~~----~~~~lA~GlDp~Kt~if~qSd~ 160 (266)
.++.+ .+.+--+|+++ +++.+|+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~ 131 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATEL 131 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHh
Confidence 33333 33444578875 68888874
No 76
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.02 E-value=0.5 Score=45.63 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=38.5
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeee---------c-C------CCHHH--------HHHHHHH
Q 024523 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAIT---------L-P------YDTQQ--------LSKATRE 137 (266)
Q Consensus 87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~---------~-~------~~~e~--------ir~~~~~ 137 (266)
|+|.+||||..+.+ .-+.+++. |++|++. =.|.|.+- . . .++++ .+++...
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGK 91 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 57999999988755 33555555 8888655 45666331 1 0 12232 2344455
Q ss_pred HHHHHHHcCcCCC
Q 024523 138 TAAIYLACGIDNS 150 (266)
Q Consensus 138 ~~~~~lA~GlDp~ 150 (266)
+.+++.++|+..+
T Consensus 92 ~~~~~~~lgi~~D 104 (382)
T cd00817 92 IREQLKRLGASVD 104 (382)
T ss_pred HHHHHHHhCceee
Confidence 6777778897543
No 77
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=90.61 E-value=1.6 Score=44.01 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=44.9
Q ss_pred CCCceEEE-ecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecceeeec----------------CCCH-HHH
Q 024523 76 SVKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLHAITL----------------PYDT-QQL 131 (266)
Q Consensus 76 ~~~~~iyt-Gi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il--IADlhA~~~----------------~~~~-e~i 131 (266)
+...++|+ |--+-+.+||||...++ .-+.++.+ |++|++. |+|.--++. ..++ +-.
T Consensus 21 ~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 21 HGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred CCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 34556654 44444789999987755 33444444 8888766 677711111 0133 344
Q ss_pred HHHHHHHHHHHHHcCcCC
Q 024523 132 SKATRETAAIYLACGIDN 149 (266)
Q Consensus 132 r~~~~~~~~~~lA~GlDp 149 (266)
+++...+.+++.++|+.+
T Consensus 101 ~~~~~~f~~d~~~Lni~~ 118 (490)
T PRK14536 101 AHYTAAFFRDTARLNIER 118 (490)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 556667788888899865
No 78
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=90.33 E-value=0.66 Score=49.49 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=48.0
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec------C-CC-HHHHHHHHHHHHHHHH
Q 024523 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL------P-YD-TQQLSKATRETAAIYL 143 (266)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~------~-~~-~e~ir~~~~~~~~~~l 143 (266)
++++..|+ -|||.+|+||..+.+ .-+.+++. |++|.+..+ |.|.+-. . .+ .+...+++.++.+++.
T Consensus 30 k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~ 109 (842)
T TIGR00396 30 KYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQ 109 (842)
T ss_pred CEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45666663 245999999988754 33555565 899876655 4454421 0 12 3556778888899999
Q ss_pred HcCcCCC
Q 024523 144 ACGIDNS 150 (266)
Q Consensus 144 A~GlDp~ 150 (266)
++|+..|
T Consensus 110 ~lG~~~D 116 (842)
T TIGR00396 110 ALGFSYD 116 (842)
T ss_pred HhCCccc
Confidence 9997544
No 79
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.36 E-value=0.62 Score=49.61 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=50.8
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecceeeecC---------CCH-HHHHHHHHHHHHH
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLP---------YDT-QQLSKATRETAAI 141 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA~~~~---------~~~-e~ir~~~~~~~~~ 141 (266)
++++|..-| -|||.||+||..+.. .-+.+++. |++|.+-++ |||+=.| .+| .-...|+.++.++
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q 112 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ 112 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 466776666 599999999965422 22333444 788877765 8877445 244 4578888999999
Q ss_pred HHHcCcCCC
Q 024523 142 YLACGIDNS 150 (266)
Q Consensus 142 ~lA~GlDp~ 150 (266)
+.++|+.-|
T Consensus 113 lk~lG~siD 121 (814)
T COG0495 113 LKSLGFSID 121 (814)
T ss_pred HHHhCCccc
Confidence 999998654
No 80
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=88.24 E-value=2.1 Score=42.70 Aligned_cols=72 Identities=13% Similarity=-0.043 Sum_probs=46.5
Q ss_pred ceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee-e-c-----CCCHH-HHHHHHHHHHHHHHHc
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQ-QLSKATRETAAIYLAC 145 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~-~-~-----~~~~e-~ir~~~~~~~~~~lA~ 145 (266)
....+|--|.+.+||||..+++ .-+.++++ |++|.+..+ |.|.- + . ..+++ -.+.+...+.+++.++
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~L 102 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKAL 102 (465)
T ss_pred eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4456788888999999987755 33445444 889866544 66532 1 1 02443 3456667788888899
Q ss_pred CcCCC
Q 024523 146 GIDNS 150 (266)
Q Consensus 146 GlDp~ 150 (266)
|+.++
T Consensus 103 gI~~d 107 (465)
T TIGR00435 103 NVLPP 107 (465)
T ss_pred CCCCC
Confidence 98744
No 81
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=86.77 E-value=1.3 Score=46.75 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=44.1
Q ss_pred CCceEEE-ecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee---------ec--CC--CH--------H
Q 024523 77 VKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI---------TL--PY--DT--------Q 129 (266)
Q Consensus 77 ~~~~iyt-Gi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~---------~~--~~--~~--------e 129 (266)
+++.+.+ .--|+|.+||||..+.+ .-+.+++. |++|.+..+ |-|.+ .+ +. +. +
T Consensus 38 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~ 117 (800)
T PRK13208 38 PVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRE 117 (800)
T ss_pred CcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHH
Confidence 3456666 34578999999988755 23555555 889877655 44432 12 11 11 1
Q ss_pred HHHHHHHHHHHHHHHcCcCCC
Q 024523 130 QLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 130 ~ir~~~~~~~~~~lA~GlDp~ 150 (266)
-..+++..+.+++.++|+..|
T Consensus 118 ~~~~~~~~~~~~~~~lg~s~D 138 (800)
T PRK13208 118 LTDEDEKKFRELWRRLGLSVD 138 (800)
T ss_pred HHHHHHHHHHHHHHHhCeeec
Confidence 233445567778888887544
No 82
>PLN02563 aminoacyl-tRNA ligase
Probab=86.69 E-value=2.1 Score=46.50 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCceEEEec-CCCCc-chhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-C------CCH-HHHHHHHHHHHHH
Q 024523 77 VKKRIVSGV-QPTGS-IHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-P------YDT-QQLSKATRETAAI 141 (266)
Q Consensus 77 ~~~~iytGi-~PTG~-lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-~------~~~-e~ir~~~~~~~~~ 141 (266)
+++++.+|+ -|+|. +|+||....+ .-+.+++. |++|++..+ |-|.+-. . ..+ +...+++..+.++
T Consensus 110 ~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q 189 (963)
T PLN02563 110 PKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQ 189 (963)
T ss_pred CCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHH
Confidence 346777776 45697 9999987644 33555665 899876655 4555522 1 122 4567778888899
Q ss_pred HHHcCcCCC
Q 024523 142 YLACGIDNS 150 (266)
Q Consensus 142 ~lA~GlDp~ 150 (266)
+..+|+..|
T Consensus 190 ~~~lG~s~D 198 (963)
T PLN02563 190 LKSLGFSYD 198 (963)
T ss_pred HHHhCcEee
Confidence 999996433
No 83
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.08 E-value=2.2 Score=43.77 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=43.0
Q ss_pred eEEEec--CCCCcchhhhHHHHHHHHHHHhccCc-EEEEEecceeeecCC-CHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVF 155 (266)
Q Consensus 80 ~iytGi--~PTG~lHLGh~ig~i~k~~~LQ~g~~-v~ilIADlhA~~~~~-~~e~ir~~~~~~~~~~lA~GlDp~Kt~if 155 (266)
.+.+-| ||||.+||||.--++-++. +|..++ -.|+==|++ +|. +.++.++.+ .+++--+||.|++. -
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqY-fa~~~~G~LIvRFDDT---NPaKE~~eFe~~I---leDl~~LgIkpd~~--T 270 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQY-FAQAYQGKLIVRFDDT---NPAKENEEFEDVI---LEDLSLLGIKPDRV--T 270 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHH-HHHhcCceEEEEecCC---CcchhhHHHHHHH---HHHHHHhCcCccee--e
Confidence 344444 7889999999877775553 454333 334434443 442 344455444 44555689999853 4
Q ss_pred Ecccch
Q 024523 156 VQSHVR 161 (266)
Q Consensus 156 ~qSd~~ 161 (266)
.-||+.
T Consensus 271 yTSDyF 276 (712)
T KOG1147|consen 271 YTSDYF 276 (712)
T ss_pred echhhH
Confidence 457754
No 84
>PLN02946 cysteine-tRNA ligase
Probab=85.22 E-value=4.5 Score=41.49 Aligned_cols=71 Identities=13% Similarity=-0.041 Sum_probs=43.5
Q ss_pred CCceEEEecCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eeccee--eecC-----CCH-HHHHHHHHHHHHH
Q 024523 77 VKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHA--ITLP-----YDT-QQLSKATRETAAI 141 (266)
Q Consensus 77 ~~~~iytGi~PT--G~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA--~~~~-----~~~-e~ir~~~~~~~~~ 141 (266)
....+|+ .+|| +.+||||..+++ .-+.++.+ |++|.+. -.|.|. ++.. .++ +-.++++.++.++
T Consensus 79 ~~v~~Y~-CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d 157 (557)
T PLN02946 79 GKVGMYV-CGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD 157 (557)
T ss_pred CceeEEE-eCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455553 3566 789999987755 33555444 8887654 333332 2211 244 4456667788888
Q ss_pred HHHcCcC
Q 024523 142 YLACGID 148 (266)
Q Consensus 142 ~lA~GlD 148 (266)
+.++|+.
T Consensus 158 ~~~LnI~ 164 (557)
T PLN02946 158 MAYLHCL 164 (557)
T ss_pred HHHCCCC
Confidence 8899885
No 85
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=84.57 E-value=1.4 Score=47.02 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA 121 (266)
+++.|++|. -+||.+|+||.+... .-+.+++. |++|.+..+-+|+
T Consensus 33 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 82 (861)
T TIGR00422 33 PPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHA 82 (861)
T ss_pred CeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcC
Confidence 346666654 467999999988644 23555555 8898776665554
No 86
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=84.50 E-value=1.2 Score=48.30 Aligned_cols=46 Identities=30% Similarity=0.303 Sum_probs=30.2
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~ 122 (266)
+++.|.+|. -|||.+|+||.+... .-+.+++. |++|.+..+ |-|++
T Consensus 60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 345666654 368999999988644 33556665 899876655 44444
No 87
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.47 E-value=1.1 Score=47.99 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCCcchhhhHHH--HHHHHHHHhc--cCcEEEEEecceeeecC---------------C--CHHHH--------HHHHHH
Q 024523 87 PTGSIHLGNYLG--AIKNWIALQN--SYETLFFIVDLHAITLP---------------Y--DTQQL--------SKATRE 137 (266)
Q Consensus 87 PTG~lHLGh~ig--~i~k~~~LQ~--g~~v~ilIADlhA~~~~---------------~--~~e~i--------r~~~~~ 137 (266)
+||.+|+||.+. .+..+.+++. |+++.++-+=+||=+-- . .-|+. .++...
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~ 123 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGT 123 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHH
Confidence 499999999864 2355666666 89999998888886531 1 12222 333345
Q ss_pred HHHHHHHcCcCCC
Q 024523 138 TAAIYLACGIDNS 150 (266)
Q Consensus 138 ~~~~~lA~GlDp~ 150 (266)
+..++..+|+..|
T Consensus 124 I~~Q~~rLG~S~D 136 (877)
T COG0525 124 IREQLRRLGVSVD 136 (877)
T ss_pred HHHHHHHhCCCcc
Confidence 6778888887655
No 88
>PLN02943 aminoacyl-tRNA ligase
Probab=83.46 E-value=1.4 Score=47.67 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=30.2
Q ss_pred CCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 024523 77 VKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (266)
Q Consensus 77 ~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA 121 (266)
+++.+..| =-+||.+|+||.+... .-+.+++. |++|.+..+=+|+
T Consensus 88 ~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 137 (958)
T PLN02943 88 DPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHA 137 (958)
T ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcc
Confidence 34666666 5679999999987633 23445554 8998776555554
No 89
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=80.50 E-value=2.1 Score=45.83 Aligned_cols=44 Identities=32% Similarity=0.387 Sum_probs=28.0
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 024523 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (266)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA 121 (266)
++.+.+|. -+||.+|+||.+... .-+.+++. |+++.+.-+-+|+
T Consensus 37 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 85 (874)
T PRK05729 37 PFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHA 85 (874)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCcc
Confidence 45555543 357999999988644 23555555 8888666554444
No 90
>PLN02843 isoleucyl-tRNA synthetase
Probab=79.78 E-value=2.9 Score=45.41 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec--------------CCCHHHHHHHHH
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL--------------PYDTQQLSKATR 136 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~--------------~~~~e~ir~~~~ 136 (266)
+++.+..|. -++|.+||||.+..+ .-+.+++. |+++.+..+ |-|.+-. ..+++++++.++
T Consensus 32 ~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~ 111 (974)
T PLN02843 32 ESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAA 111 (974)
T ss_pred CCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHH
Confidence 345565554 357999999988644 22455554 888765544 5553311 014555555554
Q ss_pred HH--------HHHHHHcCc--CCCc
Q 024523 137 ET--------AAIYLACGI--DNSK 151 (266)
Q Consensus 137 ~~--------~~~~lA~Gl--Dp~K 151 (266)
++ .+++..+|+ |-++
T Consensus 112 ~~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 112 KFAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHHhCCceecCC
Confidence 33 456677888 6555
No 91
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=78.90 E-value=7.9 Score=33.78 Aligned_cols=72 Identities=13% Similarity=0.201 Sum_probs=40.1
Q ss_pred chhhhHHHHHHHHHHHhccCcEEEEEeccee-ee--cCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchhhhHHH
Q 024523 91 IHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELM 167 (266)
Q Consensus 91 lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA-~~--~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~~~eL~ 167 (266)
+|+||.- +++.. ++..-+++|.|+.... .. ++-+.++-.+.++.. +...|+|.+++.|.-=.|.. +.+..
T Consensus 11 ~H~GHl~-~i~~a--~~~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~---~~~~~~~~~rv~i~pi~D~~-~~~~~ 83 (181)
T cd02168 11 FHNGHLA-VVLIA--LEKAKKVIILIGSARTARNIKNPWTSEEREVMIEAA---LSDAGADLARVHFRPLRDHL-YSDNL 83 (181)
T ss_pred CCHHHHH-HHHHH--HHHCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHH---HhccCCCcceEEEEecCCCC-CChHH
Confidence 8999975 44454 3332267777766522 11 233545444444433 23468899988888655542 23334
Q ss_pred HH
Q 024523 168 WL 169 (266)
Q Consensus 168 w~ 169 (266)
|.
T Consensus 84 W~ 85 (181)
T cd02168 84 WL 85 (181)
T ss_pred HH
Confidence 54
No 92
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=75.88 E-value=5.6 Score=40.14 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=43.8
Q ss_pred CceEEEecCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecc-----------eeeecC-----CCH-HHHH
Q 024523 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL-----------HAITLP-----YDT-QQLS 132 (266)
Q Consensus 78 ~~~iytGi~PT--G~lHLGh~ig~i--~k~~~LQ~--g~~v~il--IADl-----------hA~~~~-----~~~-e~ir 132 (266)
...+|+ .+|| ..+||||..+++ .-++++++ |++|.+. |+|. -+++.. .++ +-.+
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 445553 4566 569999987755 33444444 8888763 6666 222221 134 3455
Q ss_pred HHHHHHHHHHHHcCcCCC
Q 024523 133 KATRETAAIYLACGIDNS 150 (266)
Q Consensus 133 ~~~~~~~~~~lA~GlDp~ 150 (266)
+++..+.+++.++|+.+.
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 666777888888888653
No 93
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.81 E-value=3.5 Score=43.39 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=48.6
Q ss_pred CCCCCCceEEEec-CCCCcchhhhHHH-HH-HHHHHHhc--cCcEEEEEecceeeecCC---------C-HHHHHHHHHH
Q 024523 73 SSSSVKKRIVSGV-QPTGSIHLGNYLG-AI-KNWIALQN--SYETLFFIVDLHAITLPY---------D-TQQLSKATRE 137 (266)
Q Consensus 73 ~~~~~~~~iytGi-~PTG~lHLGh~ig-~i-~k~~~LQ~--g~~v~ilIADlhA~~~~~---------~-~e~ir~~~~~ 137 (266)
....++.+|++-| -|||.+|+||... .| ..+.++|+ |++|+=-++ |-|+=-|. + -....+|+..
T Consensus 53 ~d~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMG-WDaFGLPAENAAiergv~P~sWT~~NI~~ 131 (876)
T KOG0435|consen 53 SDKSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMG-WDAFGLPAENAAIERGVHPASWTINNIAK 131 (876)
T ss_pred cccCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCc-ccccCCchhhHHHhcCCCchhhhHHHHHH
Confidence 3344455999988 5999999999532 22 44566776 888755443 44443331 2 2456788888
Q ss_pred HHHHHHHcCc
Q 024523 138 TAAIYLACGI 147 (266)
Q Consensus 138 ~~~~~lA~Gl 147 (266)
+..++...|+
T Consensus 132 Mk~Ql~~lg~ 141 (876)
T KOG0435|consen 132 MKQQLKSLGI 141 (876)
T ss_pred HHHHHHHcCc
Confidence 8888888876
No 94
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=75.33 E-value=13 Score=39.23 Aligned_cols=74 Identities=12% Similarity=0.021 Sum_probs=44.2
Q ss_pred CCCceEEEecCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecce--eeecC-----CCH-HHHHHHHHHHHH
Q 024523 76 SVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLH--AITLP-----YDT-QQLSKATRETAA 140 (266)
Q Consensus 76 ~~~~~iytGi~PT--G~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlh--A~~~~-----~~~-e~ir~~~~~~~~ 140 (266)
+....+|+ .+|| ..+||||+..++ .-++++.+ |++|.+.. .|.| +++.. .++ +-.++++..+.+
T Consensus 246 ~~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~ 324 (699)
T PRK14535 246 PENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHE 324 (699)
T ss_pred CCceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34455554 4566 779999987755 33555444 88886552 2333 12211 244 344566677888
Q ss_pred HHHHcCcCCC
Q 024523 141 IYLACGIDNS 150 (266)
Q Consensus 141 ~~lA~GlDp~ 150 (266)
++.++|+.+.
T Consensus 325 d~~~LnI~~p 334 (699)
T PRK14535 325 DADALGVLRP 334 (699)
T ss_pred HHHHcCCCCC
Confidence 8888998654
No 95
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.26 E-value=3.1 Score=42.78 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=33.2
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCCc-------------ccccCCCCCcee
Q 024523 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRK-------------WKKLGGRGGAIF 260 (266)
Q Consensus 217 adlvpvG~DQ~~hleLaRdiA~r~n~~yg~~~-------------~~k~g~~~~~if 260 (266)
-.+-.+|.||..|+.-.+-+++..++...... |+||-+|.|.+.
T Consensus 336 ~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~v 392 (577)
T COG0018 336 KLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVV 392 (577)
T ss_pred EEEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceE
Confidence 34558999999999999999999987665311 567777777443
No 96
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=73.11 E-value=4.3 Score=38.89 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=26.9
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecceeee
Q 024523 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHAIT 123 (266)
Q Consensus 82 ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v--~ilIADlhA~~ 123 (266)
|+.-=|+|++|+||+-.++ ..+.++-+ |++| ...|.||=..+
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~ 73 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQI 73 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHH
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHH
Confidence 8888999999999986644 44445444 8886 56788885443
No 97
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=72.48 E-value=3.7 Score=41.78 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=30.8
Q ss_pred CEEEecCcchHHHHHHHHHHHHhhhhhCCCc---------ccccCCCCCc
Q 024523 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRK---------WKKLGGRGGA 258 (266)
Q Consensus 218 dlvpvG~DQ~~hleLaRdiA~r~n~~yg~~~---------~~k~g~~~~~ 258 (266)
-+-.+|.||..|+.-...+++.+|..-..+. +.||.||.|.
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn 379 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGN 379 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCc
Confidence 4457999999999999999999985322122 4678888773
No 98
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=71.82 E-value=20 Score=30.54 Aligned_cols=64 Identities=22% Similarity=0.196 Sum_probs=31.9
Q ss_pred chhhhHHHHHHHHHHHhccCcEEEEEec-ceeee--cCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccc
Q 024523 91 IHLGNYLGAIKNWIALQNSYETLFFIVD-LHAIT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (266)
Q Consensus 91 lHLGh~ig~i~k~~~LQ~g~~v~ilIAD-lhA~~--~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~ 160 (266)
+|+||.- +++...+.- =+++++|+. ..... ++.+.++-.+.++. .+...|+|-+++.+.-..|.
T Consensus 11 ~H~GHl~-~i~~a~~~~--d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~---~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 11 FHLGHLK-VIKWILEEV--DELIIGIGSAQESHTLENPFTAGERVLMIRR---ALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred CCHHHHH-HHHHHHHHC--CEEEEEecCCCCCCCCCCCCCHHHHHHHHHH---HHHhcCCCcCeEEEEecCCC
Confidence 9999975 445553322 135665643 33322 23344432222222 22233666778888766554
No 99
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=71.53 E-value=2.4 Score=46.45 Aligned_cols=45 Identities=33% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA 121 (266)
.++.|+.|. -+||.+|+||.++.. .-+.+++. |++|.+.-+-+|+
T Consensus 48 ~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~ 97 (1052)
T PRK14900 48 PPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHA 97 (1052)
T ss_pred CCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCcc
Confidence 346776665 367999999988644 33556665 8998776655544
No 100
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=70.77 E-value=19 Score=29.54 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=48.6
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEccc
Q 024523 83 SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (266)
Q Consensus 83 tGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd 159 (266)
.-+.=||++..-|.+-+ |.+|.|-++++++-..=-. .......++......+.+...|+||+++.+++-|-
T Consensus 32 IrvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EEccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 33444678877775422 5778998888776542222 12235677777777888888999999999988665
No 101
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=68.96 E-value=6 Score=40.57 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=27.2
Q ss_pred CCCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceee
Q 024523 76 SVKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAI 122 (266)
Q Consensus 76 ~~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlhA~ 122 (266)
.+++.+..|. -+||.||+||.+... .-+.+++. |++|.+.. -|-|.+
T Consensus 22 ~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Gl 74 (601)
T PF00133_consen 22 KPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGL 74 (601)
T ss_dssp SGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SH
T ss_pred CCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCc
Confidence 3456666664 467999999988644 22445555 88876554 466655
No 102
>PLN02381 valyl-tRNA synthetase
Probab=68.76 E-value=3.2 Score=45.64 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA 121 (266)
+++.|.+|. -+||.+|+||.+... .-+.+++. |++|.+..+-+|+
T Consensus 128 ~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~ 177 (1066)
T PLN02381 128 PPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHA 177 (1066)
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCC
Confidence 346777665 467999999987643 33555555 8998776665554
No 103
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=66.97 E-value=5.1 Score=40.87 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=32.7
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCCc-----------ccccCCCCCcee
Q 024523 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRK-----------WKKLGGRGGAIF 260 (266)
Q Consensus 217 adlvpvG~DQ~~hleLaRdiA~r~n~~yg~~~-----------~~k~g~~~~~if 260 (266)
.-+-.+|.||..|+.-...+++.+|+....+. ++||-+|.|.+.
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v 380 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVV 380 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCee
Confidence 34558999999999999999999986422111 568888888443
No 104
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=66.46 E-value=25 Score=34.79 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=43.4
Q ss_pred CceE-EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-ccee--eec-----CCCHH-HHHHHHHHHHHHHH
Q 024523 78 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQ-QLSKATRETAAIYL 143 (266)
Q Consensus 78 ~~~i-ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA--~~~-----~~~~e-~ir~~~~~~~~~~l 143 (266)
...+ .+|-=|=+.+||||+.+++ .-++++++ |++|.++.+ |.|. ++. ..+++ -.++++.++.+++.
T Consensus 36 ~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~ 115 (411)
T TIGR03447 36 EAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDME 115 (411)
T ss_pred cceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444 4565566889999987765 44666555 889866533 3331 111 12443 34566677788888
Q ss_pred HcCcC
Q 024523 144 ACGID 148 (266)
Q Consensus 144 A~GlD 148 (266)
++|+.
T Consensus 116 ~Lni~ 120 (411)
T TIGR03447 116 ALRVL 120 (411)
T ss_pred HcCCC
Confidence 88864
No 105
>PLN02286 arginine-tRNA ligase
Probab=64.75 E-value=4.8 Score=41.22 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=28.6
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecce
Q 024523 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLH 120 (266)
Q Consensus 82 ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v--~ilIADlh 120 (266)
|+.--|+|+||+||.-+++ ..+.++-+ |++| ...|.||=
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchH
Confidence 8899999999999976544 44444444 8886 46788873
No 106
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=62.44 E-value=4.6 Score=43.56 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=43.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeecC-------------CCHHHHHHHH---
Q 024523 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITLP-------------YDTQQLSKAT--- 135 (266)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~~-------------~~~e~ir~~~--- 135 (266)
++.+.+|. -++|.+|+||.+..+ .-+.+++. |+++.+..+ |-|.+-.- .+++++++.+
T Consensus 50 ~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~ 129 (912)
T PRK05743 50 KFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREY 129 (912)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHH
Confidence 45555554 357999999988654 23556666 888866555 44443210 1345444333
Q ss_pred -----HHHHHHHHHcCc--CCCc
Q 024523 136 -----RETAAIYLACGI--DNSK 151 (266)
Q Consensus 136 -----~~~~~~~lA~Gl--Dp~K 151 (266)
..+.+++..+|+ |-++
T Consensus 130 ~~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 130 ALEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHHhCCcccCCC
Confidence 334557777898 6554
No 107
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=60.28 E-value=5.4 Score=42.59 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=30.9
Q ss_pred CCCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 024523 76 SVKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (266)
Q Consensus 76 ~~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~ 122 (266)
.++++++.|. -|||.+|+||.+... .-+.+++. |++|.+..+ |-|.+
T Consensus 35 ~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 35 KPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 3457888887 245999999987644 22555665 888866554 55544
No 108
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=59.91 E-value=24 Score=34.64 Aligned_cols=69 Identities=12% Similarity=0.015 Sum_probs=41.0
Q ss_pred ceEE-EecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee--ecC-----CCHH-HHHHHHHHHHHHHHH
Q 024523 79 KRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI--TLP-----YDTQ-QLSKATRETAAIYLA 144 (266)
Q Consensus 79 ~~iy-tGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~--~~~-----~~~e-~ir~~~~~~~~~~lA 144 (266)
..+| +|-=|-+.+||||+.+++ .-+.++++ |++|.+. =.|.|.- +.. .+++ -.+++...+.+++.+
T Consensus 10 v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~ 89 (384)
T PRK12418 10 ATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEA 89 (384)
T ss_pred eEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444 344444889999987765 33555555 8887655 3344421 111 2443 345566777888888
Q ss_pred cCc
Q 024523 145 CGI 147 (266)
Q Consensus 145 ~Gl 147 (266)
+|+
T Consensus 90 Lni 92 (384)
T PRK12418 90 LRV 92 (384)
T ss_pred hCC
Confidence 886
No 109
>PLN02660 pantoate--beta-alanine ligase
Probab=58.21 E-value=25 Score=33.21 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=25.4
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhh
Q 024523 216 QSDFVPVGEDQKQHLELTRELAERVNY 242 (266)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdiA~r~n~ 242 (266)
++|....|.--.|-+.+.|.+.+.+|.
T Consensus 146 ~P~~a~FGeKD~QQl~vIrrmV~dL~~ 172 (284)
T PLN02660 146 EPDVAVFGKKDYQQWRVIRRMVRDLDF 172 (284)
T ss_pred CCCEeeecchHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999999885
No 110
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=57.76 E-value=37 Score=32.36 Aligned_cols=54 Identities=20% Similarity=0.081 Sum_probs=34.5
Q ss_pred HHHHHhhhhcCCCEEEecCcchH-HHHHHHHHHHHhhhhhCCCc-------------ccccCCCCCceecc
Q 024523 206 VLMASDILLYQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRK-------------WKKLGGRGGAIFKV 262 (266)
Q Consensus 206 vLQAADIl~l~adlvpvG~DQ~~-hleLaRdiA~r~n~~yg~~~-------------~~k~g~~~~~if~~ 262 (266)
..|+...|-..-|+--+|+|-.+ |+|=-+-.++... |... +.||-||.|.++.+
T Consensus 196 sam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i 263 (300)
T PF01406_consen 196 SAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKPFANYWMHNGHLNVDGEKMSKSLGNFITI 263 (300)
T ss_dssp HHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-SEEEEEEE--EEETTCE--TTTT---BH
T ss_pred HHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---CchHHHHHHHHHHHhhcCccccccCCCEEEH
Confidence 45666777667899999999875 8887666666543 3222 67999999976654
No 111
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=56.67 E-value=41 Score=35.22 Aligned_cols=54 Identities=26% Similarity=0.120 Sum_probs=35.5
Q ss_pred hHHHHHhhhhcCCCEEEecCcch-HHH--HHHHHHHHHhhh-hhCCCc----------ccccCCCCCcee
Q 024523 205 PVLMASDILLYQSDFVPVGEDQK-QHL--ELTRELAERVNY-LYGGRK----------WKKLGGRGGAIF 260 (266)
Q Consensus 205 PvLQAADIl~l~adlvpvG~DQ~-~hl--eLaRdiA~r~n~-~yg~~~----------~~k~g~~~~~if 260 (266)
...|+.|||-...||--+|.|-. ||+ |+|.--|- ++. .+- ++ |.||-||.|.++
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~-~~~~~~v-~y~~H~G~L~i~G~KMSKSLGNfI 324 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAY-FDKHQWV-NYFLHSGHLHIKGLKMSKSLKNFI 324 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHh-hCCCCCC-cEEEEEEEEEeccchhhhcCCCcc
Confidence 35889999988899999999995 464 44444332 222 110 11 579999988544
No 112
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.10 E-value=35 Score=34.46 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=42.8
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc-cCcEEEE--Eecceeeec--------CCCHHHHHHHHHHHHHHHHHcCcCC
Q 024523 86 QPTGSIHLGNYLGAI--KNWIALQN-SYETLFF--IVDLHAITL--------PYDTQQLSKATRETAAIYLACGIDN 149 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i--~k~~~LQ~-g~~v~il--IADlhA~~~--------~~~~e~ir~~~~~~~~~~lA~GlDp 149 (266)
-+-..+||||+...+ ....++|. ..+.+|+ =+|-|.+-. ...++...++..++..-+.+.|+.-
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~y 125 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAY 125 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcch
Confidence 356789999977655 44667787 3344444 457787632 1245667777788888888888864
No 113
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=55.24 E-value=5.9 Score=42.90 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=26.0
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe
Q 024523 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV 117 (266)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA 117 (266)
++.+..|. -++|.+|+||..... .-+.++|. |++|.+..+
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G 70 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLG 70 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCc
Confidence 45555554 357999999987644 33556666 888766543
No 114
>PLN02959 aminoacyl-tRNA ligase
Probab=50.14 E-value=8.5 Score=42.46 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=20.9
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE
Q 024523 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI 116 (266)
Q Consensus 87 PTG~lHLGh~ig~i~k--~~~LQ~--g~~v~ilI 116 (266)
++|.|||||.+....+ ..++|. |++|.+..
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4799999998865523 556666 77775543
No 115
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=49.61 E-value=31 Score=34.89 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=46.5
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEE---
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV--- 154 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~i--- 154 (266)
+++=.-=-|||.+|||-+-.++-++..-.+ |.+.++=|-|- -.+ ..+......+..++.=+|+++|..-.
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDT-Dq~-----R~v~gs~e~i~~~L~w~nl~~DEgP~~gG 107 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDT-DQK-----RLIRGSEEAIYEDLKWANLDWDEGPGVGG 107 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccc-ccc-----ccccchHHHHHHHHHhcCCCcccCCCcCC
Confidence 444444557799999999888877654444 66665555442 111 11223334555666778998875543
Q ss_pred ----EEcccch
Q 024523 155 ----FVQSHVR 161 (266)
Q Consensus 155 ----f~qSd~~ 161 (266)
|.||+-.
T Consensus 108 ~~GPY~QS~R~ 118 (524)
T KOG1149|consen 108 PFGPYEQSERL 118 (524)
T ss_pred CCCchhhHHHH
Confidence 5788743
No 116
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=47.73 E-value=89 Score=29.76 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=36.5
Q ss_pred ceEEEe-cCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecc---eeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 024523 79 KRIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL---HAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 154 (266)
Q Consensus 79 ~~iytG-i~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADl---hA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~i 154 (266)
.-+|.| |+| +|+||.. +++...+. .=+++|.++.. |..-++-+.++-.+.++. .++ ++|..++.|
T Consensus 8 ~~~~~G~F~P---~H~GHl~-~i~~a~~~--~d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~----~~~-~~~~~r~~~ 76 (340)
T PRK05379 8 YLVFIGRFQP---FHNGHLA-VIREALSR--AKKVIVLIGSADLARSIKNPFSFEERAQMIRA----ALA-GIDLARVTI 76 (340)
T ss_pred EEEEeeccCC---CCHHHHH-HHHHHHHH--CCEEEEEEccCCCCCcCCCCCCHHHHHHHHHH----Hhh-cCCCceEEE
Confidence 445555 566 8999975 44454222 22578888643 222233344443333333 233 666667666
Q ss_pred EEccc
Q 024523 155 FVQSH 159 (266)
Q Consensus 155 f~qSd 159 (266)
.-=.|
T Consensus 77 ~pi~d 81 (340)
T PRK05379 77 RPLRD 81 (340)
T ss_pred EECCC
Confidence 64333
No 117
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=47.48 E-value=79 Score=27.33 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=30.9
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEecce-e--eecCCCHHHHHHHHHHHHHHH-HHcCcCCCceEEEEccc
Q 024523 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLH-A--ITLPYDTQQLSKATRETAAIY-LACGIDNSKASVFVQSH 159 (266)
Q Consensus 85 i~PTG~lHLGh~ig~i~k~~~LQ~g~~-v~ilIADlh-A--~~~~~~~e~ir~~~~~~~~~~-lA~GlDp~Kt~if~qSd 159 (266)
|+| +|+||.- +++...+ .++ ++++|+.-. . ..++-+.++-. ++++.. ...+++.+++.+.--.|
T Consensus 9 F~P---~H~GHl~-~i~~a~~---~~d~v~v~i~s~~~~~~~~~p~~~~~R~----~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 9 FQP---FHKGHLE-VIKWILE---EVDELIIGIGSAQESHTLKNPFTAGERI----LMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred cCC---CCHHHHH-HHHHHHH---hCCEEEEEecCCCCCCCCCCCCCHHHHH----HHHHHHHhcCCCCcceeeEecCCC
Confidence 455 9999975 4445422 455 556565332 2 12233333222 222222 23566556666664343
No 118
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=47.40 E-value=13 Score=41.63 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~ 122 (266)
+++.++.|- -+||.+|+||.+... .-+.+++. |++|.+..+ |-|.+
T Consensus 102 ~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 102 KAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred CcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 346667775 357999999987533 22445554 889866544 55544
No 119
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=46.69 E-value=12 Score=40.66 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=29.6
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~ 122 (266)
+++.+..|. -++|.+|+||.+..+ .-+.+++. |+++.+..+ |-|.+
T Consensus 54 ~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 54 PKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred CcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 346666665 357999999988644 22555555 888755544 55554
No 120
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=45.03 E-value=83 Score=26.49 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=50.4
Q ss_pred eeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEE----EecceeeecCCCHHHHHHHH
Q 024523 60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF----IVDLHAITLPYDTQQLSKAT 135 (266)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~il----IADlhA~~~~~~~e~ir~~~ 135 (266)
|+-.+++.+.-.--+-+...+| .=+.=||++.-- ++ +..|++|.|-++. ++|-|=..++. +..+..
T Consensus 11 csygaaDlag~~rmqyp~~vRi-Irv~CsGrvn~~----fv--l~Al~~GaDGV~v~GC~~geCHy~~GN~---ka~rR~ 80 (132)
T COG1908 11 CSYGAADLAGTSRMQYPPNVRI-IRVMCSGRVNPE----FV--LKALRKGADGVLVAGCKIGECHYISGNY---KAKRRM 80 (132)
T ss_pred ccccchhhhccccccCCCceEE-EEeeccCccCHH----HH--HHHHHcCCCeEEEecccccceeeeccch---HHHHHH
Confidence 3334444444333333334443 234446665322 22 3347998886555 56666555443 344455
Q ss_pred HHHHHHHHHcCcCCCceEEEEccc
Q 024523 136 RETAAIYLACGIDNSKASVFVQSH 159 (266)
Q Consensus 136 ~~~~~~~lA~GlDp~Kt~if~qSd 159 (266)
+-..+.+..+||+|+++.++|-|.
T Consensus 81 ~~lke~l~elgie~eRv~~~wiSa 104 (132)
T COG1908 81 ELLKELLKELGIEPERVRVLWISA 104 (132)
T ss_pred HHHHHHHHHhCCCcceEEEEEEeh
Confidence 555556667999999999988775
No 121
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=43.84 E-value=14 Score=40.23 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=30.0
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~ 122 (266)
+++.++.|. -+||.+|+||.+... .-+.+++. |++|.+..+ |-|.+
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 457777776 367999999987533 22445554 888766544 55544
No 122
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.88 E-value=52 Score=34.52 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=51.1
Q ss_pred ceEEEec--CCCCcchhhhHHHHH-HHHHHHhccC-cEEEEEecceeeecCC-CHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523 79 KRIVSGV--QPTGSIHLGNYLGAI-KNWIALQNSY-ETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS 153 (266)
Q Consensus 79 ~~iytGi--~PTG~lHLGh~ig~i-~k~~~LQ~g~-~v~ilIADlhA~~~~~-~~e~ir~~~~~~~~~~lA~GlDp~Kt~ 153 (266)
-.++|-| +|-|.+||||.= +| -++ -+.+.+ -+-++==|++ ||. +.++.-+.+.++++. +|++|= .
T Consensus 247 GkV~TRFPPEPNG~LHIGHaK-AInvNF-gyAk~~~G~cyLRfDDT---NPEkEee~yf~sI~e~V~W---LG~~P~--k 316 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAK-AINVNF-GYAKAHGGVCYLRFDDT---NPEKEEEEYFESIKEMVAW---LGFEPY--K 316 (764)
T ss_pred CeeEEeCCCCCCceeeecchh-heeech-hhhhhhCCeEEEecCCC---CcchhhHHHHHHHHHHHHH---hCCCce--e
Confidence 3567776 556999999974 44 111 123322 2444444543 443 334444445554432 699995 4
Q ss_pred EEEcccchh-hhHHHHH-------HhccCCHHHHhch
Q 024523 154 VFVQSHVRA-HVELMWL-------LSSATPIGWLNKM 182 (266)
Q Consensus 154 if~qSd~~~-~~eL~w~-------Ls~~~tv~rL~R~ 182 (266)
|-..||+.+ ..+++.. +-|+.+..++++.
T Consensus 317 vTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~ 353 (764)
T KOG1148|consen 317 VTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKER 353 (764)
T ss_pred eecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhh
Confidence 566788643 3444433 3567777777633
No 123
>PLN02882 aminoacyl-tRNA ligase
Probab=40.48 E-value=19 Score=40.17 Aligned_cols=45 Identities=20% Similarity=0.115 Sum_probs=29.6
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee
Q 024523 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI 122 (266)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~ 122 (266)
++.+|.|- -+||.+|+||.+... .-+.+++. |++|.+. =-|-|.+
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 46777775 357999999987533 22455555 8887654 4466654
No 124
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.40 E-value=28 Score=37.85 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=26.9
Q ss_pred CCcchhhhHHH-HH-HHHHHHhc--cCcEEEEEecceeeec
Q 024523 88 TGSIHLGNYLG-AI-KNWIALQN--SYETLFFIVDLHAITL 124 (266)
Q Consensus 88 TG~lHLGh~ig-~i-~k~~~LQ~--g~~v~ilIADlhA~~~ 124 (266)
||.+||||.+. +| ..+.+++. |.++.+.-+=+||=+.
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIA 127 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIA 127 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchh
Confidence 89999999875 33 33444444 7888888888898764
No 125
>PLN02413 choline-phosphate cytidylyltransferase
Probab=34.85 E-value=1.1e+02 Score=29.18 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCceEEEecCCCCc---chhhhHHHHHHHHHHHhccCcEEEEEecce
Q 024523 68 TAPVASSSSVKKRIVSGVQPTGS---IHLGNYLGAIKNWIALQNSYETLFFIVDLH 120 (266)
Q Consensus 68 ~~~~~~~~~~~~~iytGi~PTG~---lHLGh~ig~i~k~~~LQ~g~~v~ilIADlh 120 (266)
.++.++...++.+||+- |- +|.||.- +|++..++=.+-.+++-|.++.
T Consensus 17 ~~~~~~~~~r~~rVyvd----G~FDLfH~GHir-~L~qAK~lg~~d~LIVGV~sDe 67 (294)
T PLN02413 17 ATPSSSPSDRPVRVYAD----GIYDLFHFGHAR-SLEQAKKLFPNTYLLVGCCNDE 67 (294)
T ss_pred CCCCCCCCCCceEEEEe----CchhhCCHHHHH-HHHHHHHhCCCCEEEEEecccH
Confidence 44555566677888864 53 9999964 5656644422223455555554
No 126
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=34.02 E-value=1.9e+02 Score=22.64 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=16.2
Q ss_pred cchhhhHHHHHHHHHHHhccCcEEEEEecceeee
Q 024523 90 SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123 (266)
Q Consensus 90 ~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~ 123 (266)
++|.||.- +++...++-+.-.++++.+|-...-
T Consensus 8 P~H~GH~~-~l~~a~~~~~~~~vi~v~~~~~~~k 40 (157)
T PF01467_consen 8 PPHNGHLN-LLREARELFDEDLVIVVPSDNSPHK 40 (157)
T ss_dssp T--HHHHH-HHHHHHHHSSESEEEEEEEEHHCHS
T ss_pred cccHHHHH-HHHHHHHhccccccccccccccccc
Confidence 49999975 4555533322112555666665543
No 127
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=33.84 E-value=1.3e+02 Score=26.92 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=23.7
Q ss_pred ceEEEe-cCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceee
Q 024523 79 KRIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAI 122 (266)
Q Consensus 79 ~~iytG-i~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~ 122 (266)
.-+|.| ||| +|+||.- +|+.. +.+-=+++|.|+--..-
T Consensus 6 ~~v~iGRFQP---fH~GHl~-~I~~a--l~~~devII~IGSA~~s 44 (196)
T PRK13793 6 YLVFIGRFQP---FHLAHMQ-TIEIA--LQQSRYVILALGSAQME 44 (196)
T ss_pred EEEEEecCCC---CcHHHHH-HHHHH--HHhCCEEEEEEccCCCC
Confidence 446666 577 8999974 55444 33322688888764433
No 128
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=29.64 E-value=69 Score=22.15 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=16.9
Q ss_pred CcchhhhHHHHHHHHHHHhccCcEEEEEec
Q 024523 89 GSIHLGNYLGAIKNWIALQNSYETLFFIVD 118 (266)
Q Consensus 89 G~lHLGh~ig~i~k~~~LQ~g~~v~ilIAD 118 (266)
.++|.||.- ++++..++-+ ++++.|..
T Consensus 9 dp~H~GH~~-~l~~a~~~~~--~~vv~i~~ 35 (66)
T TIGR00125 9 DPFHLGHLD-LLERAKELFD--ELIVGVGS 35 (66)
T ss_pred CCCCHHHHH-HHHHHHHhCC--EEEEEECc
Confidence 349999965 4556644433 66666655
No 129
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=28.96 E-value=32 Score=32.41 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=17.8
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhh
Q 024523 216 QSDFVPVGEDQKQHLELTRELAERVNY 242 (266)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdiA~r~n~ 242 (266)
++|....|.--.|-+.+.|.+.+.+|.
T Consensus 143 ~P~~a~FGeKD~QQl~vIrrmv~dL~~ 169 (282)
T TIGR00018 143 QPDVAYFGEKDAQQLAVIRKLVADLFL 169 (282)
T ss_pred CCCeeEecccHHHHHHHHHHHHHHcCC
Confidence 566666666666666666666666653
No 130
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.31 E-value=28 Score=33.89 Aligned_cols=52 Identities=29% Similarity=0.459 Sum_probs=33.0
Q ss_pred CCcchhhhHHHHHHHHHHHhccCcEEEEEecc-eeeecCC--------------------CHHHHHHHHHHHHHHHHHc
Q 024523 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDL-HAITLPY--------------------DTQQLSKATRETAAIYLAC 145 (266)
Q Consensus 88 TG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADl-hA~~~~~--------------------~~e~ir~~~~~~~~~~lA~ 145 (266)
.|..||||| |+.+.. ...|+|-|+|+ ++.+++. +-+.+.+.++.+...|++.
T Consensus 62 cGD~HLgN~-ga~~~~-----~G~V~f~i~DFDe~~~g~~~~DlvRl~~Sl~~a~Rs~~L~d~d~~~~~~~~v~~Y~~A 134 (410)
T COG4320 62 CGDAHLGNF-GAARNS-----KGNVVFKIADFDEGHLGQYIWDLVRLAVSLVLAGRSNGLNDADIEKAIKIMVQAYKMA 134 (410)
T ss_pred ecccccccc-hhhccC-----CCceEEEecccchhhccchHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHh
Confidence 478999998 454222 46799999996 4555542 2234555666666667543
No 131
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=25.99 E-value=81 Score=29.57 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=20.5
Q ss_pred EecCCC-CcchhhhHHHHHHHHHHHhccCcEEEEEecce
Q 024523 83 SGVQPT-GSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120 (266)
Q Consensus 83 tGi~PT-G~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlh 120 (266)
.|+=|| |.+|.||.- .|+..++.- +.+++--+.|
T Consensus 24 ig~V~TmG~LH~GH~~-LI~~a~~~a---~~vVvtf~~n 58 (277)
T cd00560 24 IGFVPTMGALHEGHLS-LVRRARAEN---DVVVVSIFVN 58 (277)
T ss_pred EEEEECCCcccHHHHH-HHHHHHHhC---CEEEEEecCC
Confidence 577788 789999964 555554332 4444433444
No 132
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=24.24 E-value=3.1e+02 Score=26.54 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCCceEEEecCCCCcchhhhHHHHH-HHHHHHhc-cCcEEEEEec
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN-SYETLFFIVD 118 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i-~k~~~LQ~-g~~v~ilIAD 118 (266)
.+|.+|..=.+|+...|.|=+-..+ .-...|.+ |+++.++..+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~ 100 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTD 100 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5566666666888877777221111 22233555 8998887654
No 133
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=23.75 E-value=1.4e+02 Score=25.27 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=17.6
Q ss_pred chhhhHHHHHHHHHHHhccCcEEEEEecceee
Q 024523 91 IHLGNYLGAIKNWIALQNSYETLFFIVDLHAI 122 (266)
Q Consensus 91 lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~ 122 (266)
+|+||.- +++...+.-| +++++++.....
T Consensus 11 ~H~GHl~-li~~a~~~~d--~v~vi~~~~~~~ 39 (158)
T cd02167 11 LHTGHVY-LIYKALSQVD--ELLIIVGSDDTR 39 (158)
T ss_pred CCHHHHH-HHHHHHHHCC--EEEEEECCCCcc
Confidence 9999976 4555533322 467777655533
No 134
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=23.70 E-value=1.4e+02 Score=26.15 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=32.8
Q ss_pred eEEEe-cCCCCcchhhhHHHHHHHHHHHhccCcEEEEEec-ceeeec--CCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523 80 RIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD-LHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (266)
Q Consensus 80 ~iytG-i~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIAD-lhA~~~--~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if 155 (266)
-+|.| ||| +|.||.- .|+.. |.+.=+++|.|+- -.+.+. |.+ .-+...-+.+.+...|+|+ +..+.
T Consensus 6 gv~~GRFqP---~H~GHl~-vi~~a--l~~vDeliI~iGSa~~~~t~~nPfT---agER~~mi~~~L~~~~~~~-r~~~~ 75 (172)
T COG1056 6 GVYFGRFQP---LHTGHLY-VIKRA--LSKVDELIIVIGSAQESHTLKNPFT---AGERIPMIRDRLREAGLDL-RVYLR 75 (172)
T ss_pred EEEEeccCC---ccHhHHH-HHHHH--HHhCCEEEEEEccCcccccccCCCC---ccchhHHHHHHHHhcCCCc-eEEEE
Confidence 34555 455 9999965 55444 4442245555543 333333 332 2222222333444578776 54444
No 135
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=22.64 E-value=43 Score=32.69 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=25.3
Q ss_pred CCcchhhhHHHHHHHHHHHhccCcEEEEEec-ceeeecCCCHH
Q 024523 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVD-LHAITLPYDTQ 129 (266)
Q Consensus 88 TG~lHLGh~ig~i~k~~~LQ~g~~v~ilIAD-lhA~~~~~~~e 129 (266)
.|.+||+|+ |+. -....+++|-|-| ++++++|.+++
T Consensus 47 cGD~Hl~NF-G~~-----~~~~~~~vFdiNDFDEa~~gp~~wD 83 (385)
T PF10009_consen 47 CGDAHLENF-GAF-----ASPEGRVVFDINDFDEALPGPFEWD 83 (385)
T ss_pred eccchhhcc-Ccc-----cCCCCCEEecCCCCCcCCcCChHHH
Confidence 689999997 443 1235678888999 47777774444
No 136
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=22.24 E-value=74 Score=27.01 Aligned_cols=57 Identities=21% Similarity=0.393 Sum_probs=28.7
Q ss_pred chhhhHHHHHHHHHHHhc--cCcEEEEEecceeeec--CCCHHHHHHHHHHHHHHHHHcCcC
Q 024523 91 IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGID 148 (266)
Q Consensus 91 lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~--~~~~e~ir~~~~~~~~~~lA~GlD 148 (266)
+|+||-- .|++.+++.+ +....++.=|-|.... |......--.-++-+..+..+|+|
T Consensus 17 vH~GHq~-Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd 77 (157)
T PF06574_consen 17 VHLGHQK-LIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVD 77 (157)
T ss_dssp --HHHHH-HHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTES
T ss_pred ccHHHHH-HHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCC
Confidence 8999975 5677777764 5667777777775332 221111111112334445568987
No 137
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=20.96 E-value=92 Score=29.20 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=18.9
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhh
Q 024523 216 QSDFVPVGEDQKQHLELTRELAERVNY 242 (266)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdiA~r~n~ 242 (266)
++|..-.|..-.+.+.+-+++.+.++.
T Consensus 140 ~Pd~a~FG~kd~qq~~~l~~~~~~l~~ 166 (281)
T PRK00380 140 QPDVAYFGEKDYQQLAVIRRMVADLNL 166 (281)
T ss_pred CCCeeEECCCcchhHHHHHHHHHHcCC
Confidence 667766676667777777777776664
Done!