Query 024523
Match_columns 266
No_of_seqs 179 out of 1292
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 1.4E-55 4.8E-60 420.8 16.0 164 80-245 37-200 (388)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 1.1E-55 3.7E-60 415.5 14.9 167 78-245 6-172 (341)
3 3n9i_A Tryptophanyl-tRNA synth 100.0 2.5E-55 8.7E-60 413.7 15.6 169 76-245 13-181 (346)
4 3tzl_A Tryptophanyl-tRNA synth 100.0 1.4E-54 4.6E-59 405.0 17.1 182 78-261 3-203 (322)
5 1i6k_A TRPRS, tryptophanyl-tRN 100.0 3.3E-53 1.1E-57 396.4 18.8 183 79-263 2-208 (328)
6 1yi8_B Tryptophanyl-tRNA synth 100.0 4E-53 1.4E-57 399.1 18.8 191 72-262 16-227 (351)
7 2yy5_A Tryptophanyl-tRNA synth 100.0 4.7E-53 1.6E-57 398.2 14.6 168 78-245 4-176 (348)
8 2el7_A Tryptophanyl-tRNA synth 100.0 1.9E-52 6.6E-57 392.5 18.1 183 79-263 2-208 (337)
9 2g36_A Tryptophanyl-tRNA synth 100.0 2.3E-52 7.7E-57 392.5 15.7 184 77-262 11-217 (340)
10 2cyc_A Tyrosyl-tRNA synthetase 100.0 7.1E-48 2.4E-52 366.1 11.9 163 76-242 31-206 (375)
11 2cya_A Tyrosyl-tRNA synthetase 100.0 3.8E-47 1.3E-51 359.8 13.4 184 76-263 33-252 (364)
12 2j5b_A Tyrosyl-tRNA synthetase 100.0 5.7E-47 1.9E-51 356.7 12.5 184 76-263 38-246 (348)
13 3vgj_A Tyrosyl-tRNA synthetase 100.0 5.4E-46 1.9E-50 353.1 15.9 183 76-261 54-259 (373)
14 3jxe_A Tryptophanyl-tRNA synth 100.0 3.6E-46 1.2E-50 356.4 14.7 174 76-260 71-264 (392)
15 3a04_A Tryptophanyl-tRNA synth 100.0 5.9E-46 2E-50 352.7 15.9 160 76-247 68-239 (372)
16 2yxn_A Tyrosyl-tRNA synthetase 100.0 5.8E-46 2E-50 346.5 13.7 186 76-263 31-248 (322)
17 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.7E-44 5.7E-49 335.9 15.3 181 76-262 30-226 (323)
18 2jan_A Tyrosyl-tRNA synthetase 100.0 2.5E-44 8.6E-49 347.4 13.0 184 76-263 30-245 (432)
19 2pid_A Tyrosyl-tRNA synthetase 100.0 8.7E-44 3E-48 336.1 13.9 183 77-263 45-267 (356)
20 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 5.1E-43 1.8E-47 337.2 16.1 182 76-263 30-244 (420)
21 2ts1_A Tyrosyl-tRNA synthetase 100.0 9.7E-44 3.3E-48 342.2 10.9 183 76-263 28-243 (419)
22 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.3E-43 1.8E-47 354.4 14.7 181 76-260 38-241 (690)
23 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.7E-42 5.9E-47 334.6 15.5 184 76-263 35-245 (432)
24 1y42_X Tyrosyl-tRNA synthetase 100.0 2.8E-42 9.7E-47 329.5 15.6 185 76-263 62-306 (392)
25 2zp1_A Tyrosyl-tRNA synthetase 100.0 1.1E-42 3.8E-47 323.3 12.1 176 76-262 26-216 (314)
26 2ip1_A Tryptophanyl-tRNA synth 100.0 3.9E-42 1.3E-46 332.1 15.1 177 76-263 100-309 (432)
27 1n3l_A Tyrosyl-tRNA synthetase 100.0 8.7E-42 3E-46 323.8 15.2 180 77-262 34-235 (372)
28 3tze_A Tryptophanyl-tRNA synth 100.0 5.1E-42 1.7E-46 329.1 13.4 175 76-261 99-301 (406)
29 3hzr_A Tryptophanyl-tRNA synth 100.0 5.2E-42 1.8E-46 327.2 13.1 175 76-261 80-281 (386)
30 1r6u_A Tryptophanyl-tRNA synth 100.0 1E-41 3.4E-46 329.6 14.5 177 76-264 106-317 (437)
31 1r6t_A Tryptophanyl-tRNA synth 100.0 3.7E-41 1.3E-45 328.8 15.1 178 76-264 153-364 (477)
32 2dlc_X Tyrosyl-tRNA synthetase 100.0 3E-41 1E-45 322.3 13.3 184 76-263 37-241 (394)
33 3i05_A Tryptophanyl-tRNA synth 100.0 5E-41 1.7E-45 321.3 12.0 176 76-261 76-281 (395)
34 3hv0_A Tryptophanyl-tRNA synth 100.0 2E-40 6.8E-45 316.9 11.9 175 76-260 72-277 (393)
35 3foc_A Tryptophanyl-tRNA synth 100.0 4.4E-39 1.5E-43 312.0 12.1 174 76-260 89-344 (451)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.3E-32 1.8E-36 274.1 13.9 158 74-242 378-546 (690)
37 1nzj_A Hypothetical protein YA 98.5 6.4E-08 2.2E-12 89.2 5.4 167 85-259 12-236 (298)
38 2ja2_A Glutamyl-tRNA synthetas 98.4 2.7E-07 9.3E-12 90.5 7.0 152 85-242 13-234 (498)
39 1j09_A Glutamyl-tRNA synthetas 98.2 5.6E-07 1.9E-11 87.6 2.9 167 86-258 9-250 (468)
40 3afh_A Glutamyl-tRNA synthetas 98.1 6.4E-07 2.2E-11 87.7 1.9 174 79-258 26-262 (488)
41 2cfo_A Glutamyl-tRNA synthetas 97.9 3.5E-05 1.2E-09 75.4 10.3 168 84-258 7-254 (492)
42 3al0_C Glutamyl-tRNA(Gln) amid 97.9 6.9E-07 2.4E-11 89.3 -2.1 175 78-258 129-366 (592)
43 4g6z_A Glutamate-tRNA ligase; 96.8 0.0036 1.2E-07 61.3 9.2 97 78-181 25-130 (490)
44 3aii_A Glutamyl-tRNA synthetas 96.4 0.0048 1.6E-07 61.3 6.6 166 84-257 102-335 (553)
45 3u1f_A Methionyl-tRNA syntheta 96.3 0.011 3.7E-07 57.4 8.6 78 74-151 6-97 (542)
46 1qtq_A GLNRS, protein (glutami 95.8 0.013 4.4E-07 58.2 6.7 94 79-179 27-129 (553)
47 3h99_A Methionyl-tRNA syntheta 95.6 0.047 1.6E-06 53.4 9.8 81 77-159 18-112 (560)
48 2o5r_A Glutamyl-tRNA synthetas 95.5 0.013 4.5E-07 57.0 5.2 77 79-161 14-98 (481)
49 3kfl_A Methionyl-tRNA syntheta 95.4 0.08 2.7E-06 52.0 10.7 88 70-159 19-120 (564)
50 4gri_A Glutamate--tRNA ligase; 95.3 0.015 5.1E-07 57.0 5.0 96 80-181 26-137 (512)
51 2hz7_A Glutaminyl-tRNA synthet 95.3 0.044 1.5E-06 56.9 8.5 94 80-180 68-170 (851)
52 4dlp_A Aminoacyl-tRNA syntheta 95.1 0.11 3.8E-06 50.5 10.4 80 78-159 25-119 (536)
53 1irx_A Lysyl-tRNA synthetase; 94.8 0.063 2.1E-06 52.3 7.8 79 78-159 21-129 (523)
54 1rqg_A Methionyl-tRNA syntheta 94.8 0.085 2.9E-06 53.5 8.9 75 77-151 2-91 (722)
55 2d5b_A Methionyl-tRNA syntheta 94.3 0.18 6.1E-06 48.2 9.7 80 78-159 3-97 (500)
56 2csx_A Methionyl-tRNA syntheta 94.2 0.18 6.2E-06 48.3 9.5 80 78-159 5-99 (497)
57 2x1l_A Methionyl-tRNA syntheta 92.9 0.33 1.1E-05 46.8 8.8 78 80-159 15-106 (524)
58 4arc_A Leucine--tRNA ligase; l 92.1 0.28 9.5E-06 51.1 7.6 84 76-159 52-149 (880)
59 3c8z_A Cysteinyl-tRNA syntheta 91.0 1.1 3.7E-05 42.3 9.8 79 80-160 42-134 (414)
60 1gax_A Valrs, valyl-tRNA synth 89.8 0.75 2.6E-05 47.7 8.1 74 77-150 34-137 (862)
61 3sp1_A Cysteinyl-tRNA syntheta 89.7 0.96 3.3E-05 44.3 8.3 74 78-151 42-139 (501)
62 2v0c_A Aminoacyl-tRNA syntheta 87.7 0.85 2.9E-05 47.3 6.8 74 77-150 33-120 (878)
63 1li5_A Cysrs, cysteinyl-tRNA s 85.3 1.1 3.8E-05 43.0 5.8 80 79-159 23-116 (461)
64 1wkb_A Leucyl-tRNA synthetase; 84.5 1.1 3.9E-05 45.6 5.8 45 78-122 35-85 (810)
65 3tqo_A Cysteinyl-tRNA syntheta 82.8 2.3 8E-05 41.0 6.9 73 78-150 25-111 (462)
66 1iq0_A Arginyl-tRNA synthetase 82.4 0.73 2.5E-05 45.5 3.2 41 79-119 106-152 (592)
67 1ile_A Ilers, isoleucyl-tRNA s 81.1 0.63 2.1E-05 47.7 2.3 46 77-122 38-89 (821)
68 1f7u_A Arginyl-tRNA synthetase 79.7 1.2 4E-05 44.5 3.7 38 82-119 149-192 (607)
69 2zue_A Arginyl-tRNA synthetase 78.6 1.3 4.5E-05 44.2 3.6 38 82-119 125-168 (629)
70 3fnr_A Arginyl-tRNA synthetase 72.3 2.4 8.3E-05 40.8 3.5 40 82-121 36-81 (464)
71 1ffy_A Isoleucyl-tRNA syntheta 72.2 1.7 5.7E-05 45.4 2.5 47 76-122 47-99 (917)
72 1wz2_A Leucyl-tRNA synthetase; 58.1 3.5 0.00012 43.1 1.7 46 77-122 34-85 (967)
73 3oqi_A YVMC, putative uncharac 33.6 1.1E+02 0.0037 27.3 7.1 81 77-161 28-121 (257)
74 4erh_A Outer membrane protein 24.9 1.9E+02 0.0064 22.4 6.6 57 99-155 40-101 (148)
75 3oqv_A ALBC; rossman fold, cyc 22.5 1.6E+02 0.0053 26.2 6.1 84 76-161 27-123 (247)
76 3jtz_A Integrase; four strande 22.1 58 0.002 24.0 2.7 24 127-151 60-83 (88)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-55 Score=420.81 Aligned_cols=164 Identities=55% Similarity=0.881 Sum_probs=151.7
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEccc
Q 024523 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (266)
Q Consensus 80 ~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd 159 (266)
+||||++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+||+
T Consensus 37 ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~ 116 (388)
T 3prh_A 37 TIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSE 116 (388)
T ss_dssp EEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGG
T ss_pred eEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEeccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHHH
Q 024523 160 VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239 (266)
Q Consensus 160 ~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~r 239 (266)
|++|.+++|+|+|.+++++|+|+.+||++.+.. +++++|+|+||+|||||||+|++|+||||+||+||+|||||+|+|
T Consensus 117 v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~r 194 (388)
T 3prh_A 117 VPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAER 194 (388)
T ss_dssp STHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886653 679999999999999999999999999999999999999999999
Q ss_pred hhhhhC
Q 024523 240 VNYLYG 245 (266)
Q Consensus 240 ~n~~yg 245 (266)
||+.||
T Consensus 195 fn~~y~ 200 (388)
T 3prh_A 195 FNKKYN 200 (388)
T ss_dssp HHHHTC
T ss_pred hCcccC
Confidence 999998
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1.1e-55 Score=415.54 Aligned_cols=167 Identities=50% Similarity=0.860 Sum_probs=161.9
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
+++||+|++|||+||||||+|+|++|++||++++++|+||||||++++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (266)
Q Consensus 158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA 237 (266)
|+|++|.+|+|+|+|.+++++|+|+++||++..+++ +++++|+|+||+|||||||+|++|+||||+||+||+||+||+|
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999887764 6799999999999999999999999999999999999999999
Q ss_pred HHhhhhhC
Q 024523 238 ERVNYLYG 245 (266)
Q Consensus 238 ~r~n~~yg 245 (266)
+|||++||
T Consensus 165 ~rfn~~yg 172 (341)
T 3sz3_A 165 TRFNNIYS 172 (341)
T ss_dssp HHHHHHHC
T ss_pred HHhchhcc
Confidence 99999998
No 3
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=2.5e-55 Score=413.75 Aligned_cols=169 Identities=54% Similarity=0.921 Sum_probs=161.4
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if 155 (266)
..++++|+|++|||++|||||+|+|++|++||++++++|+||||||++++.+++++++++++++++|+|+|+||+|++||
T Consensus 13 ~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 13 SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp --CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred CCCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 33679999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHH
Q 024523 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (266)
Q Consensus 156 ~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRd 235 (266)
+||+|++|.+++|+|+|.+++++|+|+.+||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+||+||
T Consensus 93 ~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRd 171 (346)
T 3n9i_A 93 VQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 171 (346)
T ss_dssp EGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHH
Confidence 99999999999999999999999999999999876643 67899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhC
Q 024523 236 LAERVNYLYG 245 (266)
Q Consensus 236 iA~r~n~~yg 245 (266)
+|+|||++||
T Consensus 172 ia~rfn~~yg 181 (346)
T 3n9i_A 172 IASRFNNLYG 181 (346)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHhccccC
Confidence 9999999986
No 4
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=1.4e-54 Score=405.01 Aligned_cols=182 Identities=38% Similarity=0.664 Sum_probs=169.4
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
..++|+|++|||.||||||+|+|++|++||+|++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 45899999999999999999988999999999999999999999999889999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (266)
Q Consensus 158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA 237 (266)
|+|++|.++.|+++|.+++++|+|+.+||++.... +++++|+|+||+||||||++|++|+||||.||+||++++||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876652 6899999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCCc------------------ccccCCCCC-ceec
Q 024523 238 ERVNYLYGGRK------------------WKKLGGRGG-AIFK 261 (266)
Q Consensus 238 ~r~n~~yg~~~------------------~~k~g~~~~-~if~ 261 (266)
+|||++||..+ |+||+||.+ +||-
T Consensus 161 ~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L 203 (322)
T 3tzl_A 161 LKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDI 203 (322)
T ss_dssp HHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBS
T ss_pred HHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceec
Confidence 99999886211 679999876 6663
No 5
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=3.3e-53 Score=396.36 Aligned_cols=183 Identities=52% Similarity=0.801 Sum_probs=170.7
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcc
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qS 158 (266)
+++|+|++|||.||||||+|+|++|++||+|++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHH
Q 024523 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (266)
Q Consensus 159 d~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~ 238 (266)
+|++|.++.|+++|.+++++|+|+++||++..+ + +++++|+|+||+||||||++|++|+||||+||++|++++||+|+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999998765 3 68999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCc------------------c--cccCCCCCc----eeccC
Q 024523 239 RVNYLYGGRK------------------W--KKLGGRGGA----IFKVD 263 (266)
Q Consensus 239 r~n~~yg~~~------------------~--~k~g~~~~~----if~~p 263 (266)
|||+.||..+ | +||+||.+. ||-..
T Consensus 160 r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d 208 (328)
T 1i6k_A 160 RFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD 208 (328)
T ss_dssp HHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred HhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence 9999987211 5 799998763 76433
No 6
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=4e-53 Score=399.13 Aligned_cols=191 Identities=32% Similarity=0.489 Sum_probs=173.5
Q ss_pred CCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 72 ~~~~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
.++.++++++|+|++|||+||||||+|+|++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus 16 ~~~~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 16 PAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp -----CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred ccccCCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 33346789999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHH
Q 024523 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (266)
Q Consensus 151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~h 229 (266)
|++||+||+|++|.++.|+|+|.+++++|+|+.+||++....+ ++++++|+|+||+||||||++|++|+||||+||++|
T Consensus 96 k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~h 175 (351)
T 1yi8_B 96 KTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPM 175 (351)
T ss_dssp TEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred hcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHH
Confidence 9999999999999999999999999999999999999887554 467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCC----------Cc-------cc-ccCCCCC-ceecc
Q 024523 230 LELTRELAERVNYLYGG----------RK-------WK-KLGGRGG-AIFKV 262 (266)
Q Consensus 230 leLaRdiA~r~n~~yg~----------~~-------~~-k~g~~~~-~if~~ 262 (266)
++++||+|+|||+.||. .. |+ ||+||.+ +||-.
T Consensus 176 i~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~ 227 (351)
T 1yi8_B 176 LEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALG 227 (351)
T ss_dssp HHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTT
T ss_pred HHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCC
Confidence 99999999999999881 01 54 9999977 67643
No 7
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=4.7e-53 Score=398.23 Aligned_cols=168 Identities=44% Similarity=0.724 Sum_probs=158.5
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
++++|+|++|||.||||||+|+|++|++||++++++|+|||+||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-----CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHH
Q 024523 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (266)
Q Consensus 158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-----~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleL 232 (266)
|+|++|.++.|+++|.+++++|+|+.+||++.++.+ .+++++|+|+||+||||||++|++|+||||+||++|+||
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765532 367999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhC
Q 024523 233 TRELAERVNYLYG 245 (266)
Q Consensus 233 aRdiA~r~n~~yg 245 (266)
+||+|+|||+.||
T Consensus 164 ~Rdia~r~n~~yg 176 (348)
T 2yy5_A 164 TRDLAQRIQKKFK 176 (348)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhcc
Confidence 9999999999998
No 8
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-52 Score=392.48 Aligned_cols=183 Identities=51% Similarity=0.846 Sum_probs=170.2
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhc-c-CcEEEEEecceeeecC--CCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g-~~v~ilIADlhA~~~~--~~~e~ir~~~~~~~~~~lA~GlDp~Kt~i 154 (266)
+++|+|++|||+||||||+|+|++|++||+ | ++++|+|||+||++++ .+++++++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 489999999999999999999999999999 7 9999999999999997 79999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHH
Q 024523 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (266)
Q Consensus 155 f~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaR 234 (266)
|+||+|++|.++.|+++|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||.||++|++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999987643 36899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhC---------CC----c-----c-cccCCCCC-ceeccC
Q 024523 235 ELAERVNYLYG---------GR----K-----W-KKLGGRGG-AIFKVD 263 (266)
Q Consensus 235 diA~r~n~~yg---------~~----~-----~-~k~g~~~~-~if~~p 263 (266)
|+|+|||+.|| .. . | +||+||.+ +||-.+
T Consensus 160 dla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 160 EIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp HHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred HHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 99999999998 11 1 6 89999987 676433
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-52 Score=392.53 Aligned_cols=184 Identities=42% Similarity=0.690 Sum_probs=167.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 024523 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (266)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~i 154 (266)
+.+++|+|++|||.||||||+|+|++|++||+ |++++++|||+||+|+ +.|++++++++++++++|+|+|+||+|++|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 46899999999999999999999999999999 7999999999999998 788999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhhHHH---hhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHH
Q 024523 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (266)
Q Consensus 155 f~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke---~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hle 231 (266)
|+||+|++|.++.|+++|.+++++|+|+.+||+ +.+. .+++++|+|+||+||||||++|++|+||||+||++|++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 5432 35789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCCc-----------------ccccCCCCC-ceecc
Q 024523 232 LTRELAERVNYLYGGRK-----------------WKKLGGRGG-AIFKV 262 (266)
Q Consensus 232 LaRdiA~r~n~~yg~~~-----------------~~k~g~~~~-~if~~ 262 (266)
++||+|+|||+.||..+ |+||+||.+ +||-.
T Consensus 169 l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~ 217 (340)
T 2g36_A 169 LTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLE 217 (340)
T ss_dssp HHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTT
T ss_pred HHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeee
Confidence 99999999999988110 679999876 66643
No 10
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.1e-48 Score=366.14 Aligned_cols=163 Identities=21% Similarity=0.290 Sum_probs=151.8
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC---CCHHHHHHHH-HHHH----HHHHHcC
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACG 146 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~---~~~e~ir~~~-~~~~----~~~lA~G 146 (266)
++++++|+|++|||.+|||||++.+.+|++||+ |++++|+|||+||++++ .+++++++++ ++++ ++|+|+|
T Consensus 31 ~~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G 110 (375)
T 2cyc_A 31 GAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMG 110 (375)
T ss_dssp TCCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CCCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357899999999999999998888899999999 89999999999999985 3899999999 8898 9999999
Q ss_pred cCCCceEEEEcccchhhhHHHHHH----hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEe
Q 024523 147 IDNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (266)
Q Consensus 147 lDp~Kt~if~qSd~~~~~eL~w~L----s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpv 222 (266)
+||+|++||+||+|+++. ++|.+ ++.++++||.|+.+||.+. ..+.+++|+|+||+||||||++|++|+|||
T Consensus 111 ~dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~---~~~~i~~g~f~YP~LQaaDil~~~~~~vp~ 186 (375)
T 2cyc_A 111 GDPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ---MGEAIDFAKLIYPMMQVADIFYQGVTIAHA 186 (375)
T ss_dssp CCGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC---CCTTCBTHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc---cCCCCChHHHHHHHHHHHHHHHhCCCeecc
Confidence 999999999999999987 77876 9999999999999988753 235689999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhhh
Q 024523 223 GEDQKQHLELTRELAERVNY 242 (266)
Q Consensus 223 G~DQ~~hleLaRdiA~r~n~ 242 (266)
|.||++|++++||+|+|||+
T Consensus 187 G~DQ~~~i~l~rdla~r~n~ 206 (375)
T 2cyc_A 187 GMDQRKAHVIAIEVAQKLRY 206 (375)
T ss_dssp EGGGHHHHHHHHHHGGGCSS
T ss_pred cchHHHHHHHHHHHHHHhCC
Confidence 99999999999999999997
No 11
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=3.8e-47 Score=359.83 Aligned_cols=184 Identities=19% Similarity=0.260 Sum_probs=157.5
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++++|+||+|||.+|||| ++.+.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+||+|
T Consensus 33 ~~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k 111 (364)
T 2cya_A 33 GARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVER 111 (364)
T ss_dssp CSCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 45789999999999999999 667789999999 89999999999999985 69999999999999999999999999
Q ss_pred eEEEEcccchhhhHHHHH----HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcch
Q 024523 152 ASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (266)
Q Consensus 152 t~if~qSd~~~~~eL~w~----Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~ 227 (266)
++||+||+|+++ +++|. +++.+++++|+|+.+|+.+.. ++..+++|+|+||+||||||++|++|+||||.||+
T Consensus 112 ~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~ 188 (364)
T 2cya_A 112 VRFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQR 188 (364)
T ss_dssp CEEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred eEEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHH
Confidence 999999999876 56666 999999999999999887643 22458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh----------hCCC----------------cccccCCC-CC-ceeccC
Q 024523 228 QHLELTRELAERVNYL----------YGGR----------------KWKKLGGR-GG-AIFKVD 263 (266)
Q Consensus 228 ~hleLaRdiA~r~n~~----------yg~~----------------~~~k~g~~-~~-~if~~p 263 (266)
+|++++||+|+|||+. -|.+ .++||+|| ++ +||-..
T Consensus 189 ~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d 252 (364)
T 2cya_A 189 KAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD 252 (364)
T ss_dssp HHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC
T ss_pred HHHHHHHHHHHHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccC
Confidence 9999999999999852 1333 25899999 44 787543
No 12
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=5.7e-47 Score=356.73 Aligned_cols=184 Identities=20% Similarity=0.243 Sum_probs=149.0
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC---CHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~---~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++++|+|++|||.||||||++.+.+|++||+ |++++++|||+||++++. +++++++++++++++|+|+|+||+|
T Consensus 38 ~~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k 117 (348)
T 2j5b_A 38 GRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDG 117 (348)
T ss_dssp TCCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 468899999999999999998888889999999 899999999999999853 8999999999999999999999999
Q ss_pred eEEEEcccc-hhhhHHHHHHhc----cCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc---CCCEEEec
Q 024523 152 ASVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVG 223 (266)
Q Consensus 152 t~if~qSd~-~~~~eL~w~Ls~----~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l---~adlvpvG 223 (266)
++||+||+| ++|. ++|.+.+ .++++++.++.+++.+. +.+++++|+|+||+||||||++| ++|+||||
T Consensus 118 ~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G 193 (348)
T 2j5b_A 118 TRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLG 193 (348)
T ss_dssp EEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCB
T ss_pred eEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEec
Confidence 999999998 5565 7887654 88888888887776542 22578999999999999999999 99999999
Q ss_pred CcchHHHHHHHHHHHHhhhhhC----------CCcc-cccCCCC--CceeccC
Q 024523 224 EDQKQHLELTRELAERVNYLYG----------GRKW-KKLGGRG--GAIFKVD 263 (266)
Q Consensus 224 ~DQ~~hleLaRdiA~r~n~~yg----------~~~~-~k~g~~~--~~if~~p 263 (266)
.||++|++++||+|+|||+.|- ..-+ +|||||. ++||-.+
T Consensus 194 ~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 194 IDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp GGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred cChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCeEeecC
Confidence 9999999999999999998762 1114 7999997 3787544
No 13
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=5.4e-46 Score=353.15 Aligned_cols=183 Identities=21% Similarity=0.294 Sum_probs=159.4
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++++|+|++|||.+||||.+..+.+|++||+ ||+++|+|||+||++++ .+++++++++++++++|+|+|+||+|
T Consensus 54 ~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k 133 (373)
T 3vgj_A 54 KRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMEN 133 (373)
T ss_dssp CSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred CCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhh
Confidence 457899999999999999996432236889999 99999999999999983 58999999999999999999999999
Q ss_pred eEEEEcccch-hhhHHHHHH----hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523 152 ASVFVQSHVR-AHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (266)
Q Consensus 152 t~if~qSd~~-~~~eL~w~L----s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ 226 (266)
++||+||+|+ +|.+++|.+ +..++++|+.++.+++.+. ..+++++|+|+||+||||||++|++|+||||.||
T Consensus 134 ~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~---~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ 210 (373)
T 3vgj_A 134 VQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS---EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQ 210 (373)
T ss_dssp EEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC---TTSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGG
T ss_pred eEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh---ccCCCChHHHHHHHHHHhcccccCCcEEEcchhh
Confidence 9999999998 899999975 4578999999998876432 1257999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhCCC-----------cc-cccCCCC--Cceec
Q 024523 227 KQHLELTRELAERVNYLYGGR-----------KW-KKLGGRG--GAIFK 261 (266)
Q Consensus 227 ~~hleLaRdiA~r~n~~yg~~-----------~~-~k~g~~~--~~if~ 261 (266)
++|++++||+|+|||++|+.- -| +||+||. ++||-
T Consensus 211 ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L 259 (373)
T 3vgj_A 211 RKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFM 259 (373)
T ss_dssp HHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeec
Confidence 999999999999999887521 14 5999997 37773
No 14
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.6e-46 Score=356.44 Aligned_cols=174 Identities=18% Similarity=0.310 Sum_probs=156.6
Q ss_pred CCCceEEEecCCCCcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec-C-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~-~-~~~e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
++++++|+|++|||.||||||++++ .+| ||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD 148 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence 5689999999999999999999986 667 887 8899999999999997 4 6999999999999999999999999
Q ss_pred ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc-CCCEEEecCcchHH
Q 024523 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH 229 (266)
Q Consensus 151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l-~adlvpvG~DQ~~h 229 (266)
|++||+||+|++|+++.|.+++.+++++++++.+|+ +++++|+|+||+|||||||++ ++|+||||+||+||
T Consensus 149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h 220 (392)
T 3jxe_A 149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY 220 (392)
T ss_dssp SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence 999999999999999999999999999998876542 578999999999999999999 69999999999999
Q ss_pred HHHHHHHHHHhhhhh----------CCCcc--cccCCCCC--cee
Q 024523 230 LELTRELAERVNYLY----------GGRKW--KKLGGRGG--AIF 260 (266)
Q Consensus 230 leLaRdiA~r~n~~y----------g~~~~--~k~g~~~~--~if 260 (266)
++|+||+|+|||+.- |.+ | +||+||.+ +||
T Consensus 221 l~l~Rdla~r~n~~~p~~l~~~~l~gLd-G~~~KMSKS~~ns~I~ 264 (392)
T 3jxe_A 221 WRLQRDFAESLGYYKTAALHSKFVPSLT-SLSGKMSASKPETAIY 264 (392)
T ss_dssp HHHHHHHTGGGTSCCCEEEEECCCCCSS-CSSSCCCTTSGGGCCB
T ss_pred HHHHHHHHHHcCCCCCeeeecccccCCC-CCccccccCCCCCeee
Confidence 999999999999511 111 3 69999875 566
No 15
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=5.9e-46 Score=352.73 Aligned_cols=160 Identities=26% Similarity=0.392 Sum_probs=144.5
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC--CHHHHHHHHHHHHHHHHHcCcCCCce
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKA 152 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~--~~e~ir~~~~~~~~~~lA~GlDp~Kt 152 (266)
+++++||||++|||.||||||++++ +|+.+|+ +++++|+|||+||+|++. +++.+++++++++++|+||||||+|+
T Consensus 68 gk~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt 146 (372)
T 3a04_A 68 GERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDT 146 (372)
T ss_dssp TCCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTC
T ss_pred CCCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHc
Confidence 5789999999999999999999876 6667886 899999999999999854 56779999999999999999999999
Q ss_pred EEEEccc-chhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhh--------cCCCEEEec
Q 024523 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVG 223 (266)
Q Consensus 153 ~if~qSd-~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~--------l~adlvpvG 223 (266)
+||+||+ ..+|.++.|.+++.+++++++++. ...+.|.++||+|||||||+ |++++||||
T Consensus 147 ~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG 215 (372)
T 3a04_A 147 EFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIY-----------GELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVG 215 (372)
T ss_dssp EEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEE
T ss_pred chhhhccchHHHHHHHHHHHhhhhHHHHhhhh-----------hccCcccccCCcchhHHHhhhcCccccCccceecccc
Confidence 9999999 568999999999999999887663 24678999999999999999 566699999
Q ss_pred CcchHHHHHHHHHHHHhhhhhCCC
Q 024523 224 EDQKQHLELTRELAERVNYLYGGR 247 (266)
Q Consensus 224 ~DQ~~hleLaRdiA~r~n~~yg~~ 247 (266)
+||+||+|||||+|+|||..|+..
T Consensus 216 ~DQ~~hleltRdiA~rfn~~~~~~ 239 (372)
T 3a04_A 216 ADQDPHLRLTRDLADRMAGVVELE 239 (372)
T ss_dssp GGGHHHHHHHHHHHHHTTTTSCCC
T ss_pred hhhHHHHHHHHHHHHHhcCccccc
Confidence 999999999999999999988753
No 16
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=5.8e-46 Score=346.50 Aligned_cols=186 Identities=16% Similarity=0.214 Sum_probs=162.1
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHH---HHHHH
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAA 140 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~---~~~~~ 140 (266)
++++++|+|++|||+ ||||||++ +.+|++||+ |++++++|||+||+|+ |. +++++++++ +++++
T Consensus 31 ~~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~ 109 (322)
T 2yxn_A 31 QGPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVA 109 (322)
T ss_dssp HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHG
T ss_pred CCCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence 457899999999999 99999995 569999999 8999999999999998 53 899999999 78888
Q ss_pred HHHHcCcCCCceEEEEcccchh-hhHHHHH--HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc--
Q 024523 141 IYLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-- 215 (266)
Q Consensus 141 ~~lA~GlDp~Kt~if~qSd~~~-~~eL~w~--Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l-- 215 (266)
.|+|+|+||+|++||.||+|+. +.++.|+ +++.++++|+.|+.++|++... .++++++|+|+||+||||||++|
T Consensus 110 ~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~-~~~~is~g~f~YP~LQaaDil~l~~ 188 (322)
T 2yxn_A 110 PFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNR-EDQGISFTEFSYNLLQGYDFACLNK 188 (322)
T ss_dssp GGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHC-TTCCCCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhcc-CCCCccchhhhHHHHHHHHHHHHhc
Confidence 8999999999999999999976 4777777 8999999999999998876542 12578999999999999999999
Q ss_pred --CCCEEEecCcchHHHHHHHHHHHHhhh--hhCCCc-------ccccCCCCC-ceeccC
Q 024523 216 --QSDFVPVGEDQKQHLELTRELAERVNY--LYGGRK-------WKKLGGRGG-AIFKVD 263 (266)
Q Consensus 216 --~adlvpvG~DQ~~hleLaRdiA~r~n~--~yg~~~-------~~k~g~~~~-~if~~p 263 (266)
++|+++||.||++|++++||+|+|||+ .++... |+|||||.+ +||-.+
T Consensus 189 ~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 189 QYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp HHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred cCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCCeeeccC
Confidence 999999999999999999999999986 222111 789999987 777443
No 17
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.7e-44 Score=335.93 Aligned_cols=181 Identities=24% Similarity=0.365 Sum_probs=160.7
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC-CHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS 153 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~-~~e~ir~~~~~~~~~~lA~GlDp~Kt~ 153 (266)
++++++|+|++|||++||||++ ++.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|++
T Consensus 30 ~~~~~vy~G~~PTg~lHlG~l~-~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~ 108 (323)
T 2cyb_A 30 KEKPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK 108 (323)
T ss_dssp CSCCEEEEEECCCSCCBHHHHH-HHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE
T ss_pred CCCCEEEECcCCCCcchHHHHH-HHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 4578999999999999999974 6789999999 899999999999999965 999999999999999999999999999
Q ss_pred EEEcccch---hhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHH
Q 024523 154 VFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (266)
Q Consensus 154 if~qSd~~---~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hl 230 (266)
||+||+|+ +|+++.|.++|.+++++++|+.++.. +. .++.++|+|+||+|||||++++++|+||+|.||++|+
T Consensus 109 i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~--~~--~~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~ 184 (323)
T 2cyb_A 109 FVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS--RR--KEDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIH 184 (323)
T ss_dssp EEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTC--SC--SSSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred EEEcchhccchHHHHHHHHHhCccCHHHHhccchhhc--cc--cCCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHH
Confidence 99999995 78999999999999999999876542 22 1345999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh----------CCCcccccCCCCC-ceecc
Q 024523 231 ELTRELAERVNYLY----------GGRKWKKLGGRGG-AIFKV 262 (266)
Q Consensus 231 eLaRdiA~r~n~~y----------g~~~~~k~g~~~~-~if~~ 262 (266)
+++||+|++||+.- |.+ |+||+||.+ +||..
T Consensus 185 ~l~rdla~~~~~~~p~~l~~pll~~l~-G~KMSKS~~n~I~l~ 226 (323)
T 2cyb_A 185 MLARENLPRLGYSSPVCLHTPILVGLD-GQKMSSSKGNYISVR 226 (323)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCBCTT-SSBCCTTTTCSCBTT
T ss_pred HHHHHHHHhcCCCCceEEecCcccCCC-CCcccCCcCceeCCC
Confidence 99999999998631 111 799999977 67643
No 18
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.5e-44 Score=347.37 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=161.0
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C--------CCHHHHHHHHHHH---HHH
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAI 141 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~--------~~~e~ir~~~~~~---~~~ 141 (266)
.+++++|+|++|||+ |||||+++ +.+|++||+ |++++++|||+||+|+ | .+++++++|++++ ++.
T Consensus 30 ~~~~~iy~G~dPTg~sLHLGhlv~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~ 108 (432)
T 2jan_A 30 RGPMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLER 108 (432)
T ss_dssp HSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeCCCCCCcCHHHHHH-HHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999996 99999774 569999999 8999999999999998 6 6789999999866 667
Q ss_pred HHHcCcCCCceEEEEcccchhh-hHHHHH--HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc---
Q 024523 142 YLACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (266)
Q Consensus 142 ~lA~GlDp~Kt~if~qSd~~~~-~eL~w~--Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l--- 215 (266)
|+|+|+||+|++||+||+|+++ .++.|+ +++.+++++|.|+.+||++. .++++++|+|+||+||||||++|
T Consensus 109 ~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~---~~~~is~~ef~YPlLQaaDil~l~~~ 185 (432)
T 2jan_A 109 FVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL---AGEGISYTEFSYLLLQANDYVELHRR 185 (432)
T ss_dssp HSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT---STTCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh---cCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999874 577788 89999999999999999876 13678999999999999999999
Q ss_pred -CCCEEEecCcchHHHHHHHHHHHHhhhh--hCCCc-------ccccCCCCC--ceeccC
Q 024523 216 -QSDFVPVGEDQKQHLELTRELAERVNYL--YGGRK-------WKKLGGRGG--AIFKVD 263 (266)
Q Consensus 216 -~adlvpvG~DQ~~hleLaRdiA~r~n~~--yg~~~-------~~k~g~~~~--~if~~p 263 (266)
++|+||||.||++|++++||+|+|||+. |+... |+|||||.+ +||-.+
T Consensus 186 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 186 HGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeEEccC
Confidence 9999999999999999999999999862 22211 789999876 577544
No 19
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=8.7e-44 Score=336.11 Aligned_cols=183 Identities=21% Similarity=0.228 Sum_probs=148.8
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHHH
Q 024523 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (266)
Q Consensus 77 ~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~lA 144 (266)
+|+++|+|++|||+ |||||++ .+.+|++||+ |++++|+|||+||+|+ |. +++++++|+++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999997 9999976 5679999999 8999999999999998 42 699999999999999999
Q ss_pred cCcCCCc-----------eEEEEcccchhhhHHHHHH---hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHH
Q 024523 145 CGIDNSK-----------ASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 210 (266)
Q Consensus 145 ~GlDp~K-----------t~if~qSd~~~~~eL~w~L---s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAA 210 (266)
+ +||++ ++||+||+|..+..+.|++ ++.+++++|.++.+||++... ++++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 99855 9999999997766566654 668999999999888775432 35789999999999999
Q ss_pred hhhhc----CCCEEEecCcchHHHHHHHHHHHHhhhh--hCCCc-------ccccCCCCC-ceeccC
Q 024523 211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYL--YGGRK-------WKKLGGRGG-AIFKVD 263 (266)
Q Consensus 211 DIl~l----~adlvpvG~DQ~~hleLaRdiA~r~n~~--yg~~~-------~~k~g~~~~-~if~~p 263 (266)
||++| ++|+||||.||++|++++||+|+|||+. ++... |+|||||.+ +||-.+
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCeeeccC
Confidence 99999 9999999999999999999999999961 22111 789999977 777544
No 20
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=5.1e-43 Score=337.17 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=161.8
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHH
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL 143 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~l 143 (266)
.+++++|+||+|||+ ||||||++ +.+|++||+ ||+++++|||+||+|+ |. +++++++|++++.++++
T Consensus 30 ~~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~ 108 (420)
T 1jil_A 30 KEQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMH 108 (420)
T ss_dssp HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHH
Confidence 357899999999999 99999995 569999999 8999999999999998 53 89999999999999999
Q ss_pred HcCcCC---CceEEEEcccch-hhhHHHHHH--hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc--
Q 024523 144 ACGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-- 215 (266)
Q Consensus 144 A~GlDp---~Kt~if~qSd~~-~~~eL~w~L--s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l-- 215 (266)
++ +|| +|++||.||+|+ ++.++.|+. ++.++++||.++.+||++. ++++++|+|+||+||||||++|
T Consensus 109 ~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~----~~~is~~ef~YplLQaaD~l~l~~ 183 (420)
T 1jil_A 109 NI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL----EHGISYTEFTYTILQAIDFGHLNR 183 (420)
T ss_dssp HH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH----TTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc----cCCcchHHHHHHHHHHHHHHHHhc
Confidence 99 888 999999999997 568899885 8999999999999987654 2678999999999999999999
Q ss_pred --CCCEEEecCcchHHHHHHHHHHHHh-hh--hhCCCc-------ccccCCCCC-ceeccC
Q 024523 216 --QSDFVPVGEDQKQHLELTRELAERV-NY--LYGGRK-------WKKLGGRGG-AIFKVD 263 (266)
Q Consensus 216 --~adlvpvG~DQ~~hleLaRdiA~r~-n~--~yg~~~-------~~k~g~~~~-~if~~p 263 (266)
++|+||||.||++|++++||+|+|| |. .|+... |+|||||.+ +||-.+
T Consensus 184 ~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 184 ELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp HHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred cCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCeEecCC
Confidence 9999999999999999999999999 74 222211 789999988 787554
No 21
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=9.7e-44 Score=342.17 Aligned_cols=183 Identities=14% Similarity=0.199 Sum_probs=153.4
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHH---HH
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AA 140 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~---~~ 140 (266)
.+++++|+||+|||+ ||||||++ +.+|++||+ ||+++++|||+||+|+ |. +++++++|++++ ++
T Consensus 28 ~~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~ 106 (419)
T 2ts1_A 28 EERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLG 106 (419)
T ss_dssp HSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999 99999995 569999999 8999999999999998 53 899999999877 55
Q ss_pred HHHHcCcCCCceEEEEcccchhhhHHHHHH---hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc--
Q 024523 141 IYLACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-- 215 (266)
Q Consensus 141 ~~lA~GlDp~Kt~if~qSd~~~~~eL~w~L---s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l-- 215 (266)
.|+++|+||+|++||.||+|+.+..+.|+| ++.++++||.+.-+| +++. ++++++|+|+||+||||||++|
T Consensus 107 ~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~---k~r~-~~~is~~ef~YPlLQaaDil~l~~ 182 (419)
T 2ts1_A 107 RFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESV---QSRI-ETGISFTEFSYMMLQAYDFLRLYE 182 (419)
T ss_dssp TSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHH---HTTT-TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchh---hhcc-CCCcchHHHHHHHHHHHHHHHHhc
Confidence 667889999999999999998766566655 567777766665444 3343 3689999999999999999999
Q ss_pred --CCCEEEecCcchHHHHHHHHHHHHh-hh--hhCCCc-------ccccCCCCC-ceeccC
Q 024523 216 --QSDFVPVGEDQKQHLELTRELAERV-NY--LYGGRK-------WKKLGGRGG-AIFKVD 263 (266)
Q Consensus 216 --~adlvpvG~DQ~~hleLaRdiA~r~-n~--~yg~~~-------~~k~g~~~~-~if~~p 263 (266)
++|+||||.||++|++++||+|+|| |. .|+... |+|||||.+ +||-.+
T Consensus 183 ~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 183 TEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp HHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred cCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCeEecCC
Confidence 9999999999999999999999999 75 232221 789999988 887554
No 22
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=5.3e-43 Score=354.41 Aligned_cols=181 Identities=20% Similarity=0.332 Sum_probs=154.8
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++++|+|++|||.+||||++....+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+||+|
T Consensus 38 ~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 117 (690)
T 3p0j_A 38 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK 117 (690)
T ss_dssp CTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHH
Confidence 468999999999999999996643236889999 89999999999999983 58899999999999999999999999
Q ss_pred eEEEEccc-chhhhHHHHHH----hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523 152 ASVFVQSH-VRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (266)
Q Consensus 152 t~if~qSd-~~~~~eL~w~L----s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ 226 (266)
++||+||+ +++|.+++|.+ ++.+|++||.++.+++.+.. .++++|+|+||+||||||++|++|+||||.||
T Consensus 118 ~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~----~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ 193 (690)
T 3p0j_A 118 VLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE----GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQ 193 (690)
T ss_dssp EEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGG
T ss_pred eEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc----CCCchhhHhhHHHHHHHHHhhCCCEEeccccH
Confidence 99999999 57889999976 56899999999999876432 24899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhCCC-----------cc-cccCCCCC--cee
Q 024523 227 KQHLELTRELAERVNYLYGGR-----------KW-KKLGGRGG--AIF 260 (266)
Q Consensus 227 ~~hleLaRdiA~r~n~~yg~~-----------~~-~k~g~~~~--~if 260 (266)
++|++++||+|+|||++|+.- -| +||+||.+ +||
T Consensus 194 ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~ 241 (690)
T 3p0j_A 194 RKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF 241 (690)
T ss_dssp HHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCB
T ss_pred HHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeee
Confidence 999999999999999887521 14 59999974 676
No 23
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.7e-42 Score=334.59 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=148.7
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHH
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~l 143 (266)
.+++++|+||+|||+ ||||||++ +.+|++||+ ||+++++|||+||+++ | .+++++++|+.++.+++.
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~ 113 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG 113 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred CCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence 568899999999996 99999995 679999999 8999999999999998 4 246788888877766655
Q ss_pred HcCcC--CCceEEEEcccchhhhHHHHHH--hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCE
Q 024523 144 ACGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 219 (266)
Q Consensus 144 A~GlD--p~Kt~if~qSd~~~~~eL~w~L--s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adl 219 (266)
+|+| |+|++||+||+|.++..+.|++ ++.++++++.+..+|+.+... .+++++|+|+||+||||||++|++|+
T Consensus 114 -~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l 190 (432)
T 1h3f_A 114 -KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV 190 (432)
T ss_dssp -TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred -HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccE
Confidence 8899 9999999999998876666665 899999998888899877643 36799999999999999999999999
Q ss_pred EEecCcchHHHHHHHHHHHHhhhhh--CCCc-------cc-ccCCCCC-ceeccC
Q 024523 220 VPVGEDQKQHLELTRELAERVNYLY--GGRK-------WK-KLGGRGG-AIFKVD 263 (266)
Q Consensus 220 vpvG~DQ~~hleLaRdiA~r~n~~y--g~~~-------~~-k~g~~~~-~if~~p 263 (266)
||||.||++|++++||+++|||... +... |+ |||||.+ +||-.+
T Consensus 191 ~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 191 EMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred EEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 9999999999999999999998533 1111 64 9999987 777543
No 24
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=2.8e-42 Score=329.52 Aligned_cols=185 Identities=19% Similarity=0.189 Sum_probs=155.4
Q ss_pred CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHH
Q 024523 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (266)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~l 143 (266)
.+++++|+|++|||+ ||||||++ +.+|++||+ |++++++|||+||+|+ | .+++++++|++++.++++
T Consensus 62 ~~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~ 140 (392)
T 1y42_X 62 TRRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLK 140 (392)
T ss_dssp HCCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHH
T ss_pred CCCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHH
Confidence 457899999999999 99999995 569999999 8999999999999998 5 277889999999999988
Q ss_pred HcC-----------cC---CCceEEEEcccc-hhhhHHHHH--HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchH
Q 024523 144 ACG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 206 (266)
Q Consensus 144 A~G-----------lD---p~Kt~if~qSd~-~~~~eL~w~--Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPv 206 (266)
|+| +| |+|++||.||+| +++.++.|+ +++.++++++.+.-+||.+... .+++++|+|+||+
T Consensus 141 a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPl 218 (392)
T 1y42_X 141 KLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPI 218 (392)
T ss_dssp HHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHH
T ss_pred HHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHH
Confidence 875 45 789999999997 667888888 8999999986666566654321 3679999999999
Q ss_pred HHHHhhhhc----CCCEEEecCcchHHHHHHHHHHHHhhhhhC---------------CCc-----------ccccCCCC
Q 024523 207 LMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYG---------------GRK-----------WKKLGGRG 256 (266)
Q Consensus 207 LQAADIl~l----~adlvpvG~DQ~~hleLaRdiA~r~n~~yg---------------~~~-----------~~k~g~~~ 256 (266)
||||||+++ ++|+||||.||++|++++||+|+|||..|+ ..+ |+|||||.
T Consensus 219 LQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~ 298 (392)
T 1y42_X 219 MQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSA 298 (392)
T ss_dssp HHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCS
T ss_pred HHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCC
Confidence 999999987 699999999999999999999999998771 111 78999998
Q ss_pred C-ceeccC
Q 024523 257 G-AIFKVD 263 (266)
Q Consensus 257 ~-~if~~p 263 (266)
+ +||-.+
T Consensus 299 ~naI~L~d 306 (392)
T 1y42_X 299 GNAIWLDP 306 (392)
T ss_dssp SSBCBSST
T ss_pred CCeeeccC
Confidence 7 787554
No 25
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=1.1e-42 Score=323.27 Aligned_cols=176 Identities=23% Similarity=0.310 Sum_probs=152.5
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~Kt~ 153 (266)
++++++|+||+|||.||||| ++.+.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+| +.
T Consensus 26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~ 101 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK 101 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence 56889999999999999999 667789999999 89999999999999985 48999999999999999999998 89
Q ss_pred EEEcccchhh---hHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHH
Q 024523 154 VFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (266)
Q Consensus 154 if~qSd~~~~---~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hl 230 (266)
|++||+|+++ +++.|.+++.+++++|+|+.+|+.+. . +..++|+|+||+||||||+++++|+||||.||++|+
T Consensus 102 ~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~ 177 (314)
T 2zp1_A 102 YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH 177 (314)
T ss_dssp EEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred EEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH
Confidence 9999999754 55555599999999999999886542 2 234999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh--------CCCcc-cccCCCCC-ceecc
Q 024523 231 ELTRELAERVNYLY--------GGRKW-KKLGGRGG-AIFKV 262 (266)
Q Consensus 231 eLaRdiA~r~n~~y--------g~~~~-~k~g~~~~-~if~~ 262 (266)
+|+||+++ ...+ |.+ | +||+||.+ +||-.
T Consensus 178 ~l~R~i~~--~~~~~~~~~~l~~l~-G~~KMSKS~~~~I~L~ 216 (314)
T 2zp1_A 178 MLARELLP--KKVVCIHNPVLTGLD-GEGKMSSSKGNFIAVD 216 (314)
T ss_dssp HHHHHHSS--SCCEEEEECCCBCTT-SSSBCCTTTTCSCBTT
T ss_pred HHHHHhcC--CCcEEeeccccccCC-cccccCCCCcceecCC
Confidence 99999996 2222 222 6 79999977 77743
No 26
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=3.9e-42 Score=332.10 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=146.6
Q ss_pred CCCceEEEecCCC-CcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeeec-C-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523 76 SVKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~-~-~~~e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
++++++|+||+|| |.||||||++++ +.++||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~-~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFV-FTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHH-HHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4589999999999 789999999987 3334897 8899999999999998 3 5899999999999999999999999
Q ss_pred ceEEEEcccch--hhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh-----------cC
Q 024523 151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 216 (266)
Q Consensus 151 Kt~if~qSd~~--~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~-----------l~ 216 (266)
|++||+||+|+ .+.++.|. ++||++++++.++++ .+++++|+|+||+||||||++ ++
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~ 249 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT 249 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence 99999999997 67777773 568889988887765 567899999999999999999 57
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhh--h--------CCCcc--cccCCCCC--ceeccC
Q 024523 217 SDFVPVGEDQKQHLELTRELAERVNYL--Y--------GGRKW--KKLGGRGG--AIFKVD 263 (266)
Q Consensus 217 adlvpvG~DQ~~hleLaRdiA~r~n~~--y--------g~~~~--~k~g~~~~--~if~~p 263 (266)
+|+||||.||++|++|+||+|+|||+. + |.+ | +|||||.+ +||-.+
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLd-G~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQ-GSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTT-C--------CGGGCCBTTC
T ss_pred ceEEEeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCC-CCccccCCCCCCCeEeccC
Confidence 999999999999999999999999941 1 111 5 89999965 577544
No 27
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=8.7e-42 Score=323.84 Aligned_cols=180 Identities=21% Similarity=0.132 Sum_probs=144.8
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CCCHHHHHHHHH---H--HHHHHHHcCcCCC
Q 024523 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (266)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~~~e~ir~~~~---~--~~~~~lA~GlDp~ 150 (266)
+++++|+||+|||.||||||+++++.|..+|.|++++|+|||+||+|+ +.+++++.++.. + +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 567999999999999999999999777766779999999999999998 677777755553 2 3335799999999
Q ss_pred ceEEEEcccch---hhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcch
Q 024523 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (266)
Q Consensus 151 Kt~if~qSd~~---~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~ 227 (266)
|+.||+||+|+ ++.++.|.++|.+|+.+++++.+ .+.+ + .+++++|+|+||+||||||+++++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~--~v~~-~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA--EVVK-Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT--TTSC-C-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh--hhhc-c-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 78888999999999999988632 1111 2 3678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCCc-----------ccccCCCCC--ceecc
Q 024523 228 QHLELTRELAERVNYLYGGRK-----------WKKLGGRGG--AIFKV 262 (266)
Q Consensus 228 ~hleLaRdiA~r~n~~yg~~~-----------~~k~g~~~~--~if~~ 262 (266)
+|++++||++++|++ +... |+||+||.+ +||-.
T Consensus 190 ~~~~l~rdl~~r~~~--~~p~~l~~pll~gldG~KMSKS~~ns~I~L~ 235 (372)
T 1n3l_A 190 KIFTFAEKYLPALGY--SKRVHLMNPMVPGLTGSKMSSSEEESKIDLL 235 (372)
T ss_dssp HHHHHHHHHGGGGTC--CCCEEEEECCCCCSSCC-------CCSCBTT
T ss_pred HHHHHHHHHHHHcCC--CCCEEEecCccCCCCcccccCCCCCCeEecc
Confidence 999999999999973 2111 789999965 57643
No 28
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=5.1e-42 Score=329.06 Aligned_cols=175 Identities=15% Similarity=0.211 Sum_probs=150.8
Q ss_pred CCCceEEEecCCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 76 ~~~~~iytGi~PTG-~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
++++++|+|++||| .+|||||++++ .+| ||+ |+.++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK 176 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 56899999999999 69999999984 666 898 6789999999999976 67999999999999999999999999
Q ss_pred ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhh--------hcCCCEEE
Q 024523 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP 221 (266)
Q Consensus 151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl--------~l~adlvp 221 (266)
|++||.||+|++ .+..++.+|.|+++|+++.++++ ++++++|+|+||+|||||++ .+++|+||
T Consensus 177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp 248 (406)
T 3tze_A 177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP 248 (406)
T ss_dssp GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence 999999999976 12335678999999999988876 57899999999999999965 45799999
Q ss_pred ecCcchHHHHHHHHHHHHhhhh--h--------CCCcc--cccCCCC--Cceec
Q 024523 222 VGEDQKQHLELTRELAERVNYL--Y--------GGRKW--KKLGGRG--GAIFK 261 (266)
Q Consensus 222 vG~DQ~~hleLaRdiA~r~n~~--y--------g~~~~--~k~g~~~--~~if~ 261 (266)
||+||++|++++||+|+|||+. + |.+ | +||+||. ++||-
T Consensus 249 vG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLd-G~~~KMSKS~~~~~I~L 301 (406)
T 3tze_A 249 AAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLK-GVNRKMSASDPNSSIYL 301 (406)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTT-SCCCCSSCSCGGGSCBT
T ss_pred eccchHHHHHHHHHHHHHcCCCCceeeccCcccCCC-CCCcCCCCCCCCCcccC
Confidence 9999999999999999999841 1 111 5 6999996 37773
No 29
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=5.2e-42 Score=327.18 Aligned_cols=175 Identities=14% Similarity=0.156 Sum_probs=152.1
Q ss_pred CCCceEEEecCCCCcchhhhHHHH-HHHHHHHhc--cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~-i~k~~~LQ~--g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++++|+|++|||+||||||+++ +.+| ||+ ++.++|+|+|+||++++ .+++++++++++++++|+|+|+||+|
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 568999999999999999999998 4667 898 67889999999999985 79999999999999999999999999
Q ss_pred eEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh--------cC-CCEEE
Q 024523 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL--------YQ-SDFVP 221 (266)
Q Consensus 152 t~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~--------l~-adlvp 221 (266)
++||+||+|++ ++..++.+|.|+++|+++.++++ .+++++|+|+||+|||||+++ ++ +|+||
T Consensus 158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp 229 (386)
T 3hzr_A 158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL 229 (386)
T ss_dssp EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence 99999999976 34456788999999999988776 578999999999999998773 45 99999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhh----------CCCcc-cccCCC-CC-ceec
Q 024523 222 VGEDQKQHLELTRELAERVNYLY----------GGRKW-KKLGGR-GG-AIFK 261 (266)
Q Consensus 222 vG~DQ~~hleLaRdiA~r~n~~y----------g~~~~-~k~g~~-~~-~if~ 261 (266)
||+||++|++|+||+|+|||+.- |.+ | +||+|| .+ +||-
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLd-G~~KMSKSd~~~~I~L 281 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLS-GVTKFDIPSDHNSILL 281 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTT-CTTCCCCCCTTTSCBT
T ss_pred cccchHHHHHHHHHHHHHcCCCCceEeecCeeeCCC-CCCccCcCCCCCeeec
Confidence 99999999999999999999521 111 4 499999 44 7764
No 30
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=1e-41 Score=329.64 Aligned_cols=177 Identities=20% Similarity=0.315 Sum_probs=152.2
Q ss_pred CCCceEEEecCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
++++++|+||+|| |.||||||++++ .+| ||+ |++++|+|||+||+++. .+++++++++++++++|+|+|+||+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~ 183 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN 183 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4689999999999 789999999987 455 897 89999999999999985 6899999999999999999999999
Q ss_pred ceEEEEcccchh----hhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh-----------
Q 024523 151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----------- 214 (266)
Q Consensus 151 Kt~if~qSd~~~----~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~----------- 214 (266)
|++||.||+|++ +.++.| +++||++++++.++++ .+++++|+|+||+||||||++
T Consensus 184 kt~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~ 254 (437)
T 1r6u_A 184 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT 254 (437)
T ss_dssp GEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred ceEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhccccc
Confidence 999999999975 555554 4668888888887765 567999999999999999999
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhh--h--------CCCcc--cccCCCCC--ceeccCC
Q 024523 215 YQSDFVPVGEDQKQHLELTRELAERVNYL--Y--------GGRKW--KKLGGRGG--AIFKVDS 264 (266)
Q Consensus 215 l~adlvpvG~DQ~~hleLaRdiA~r~n~~--y--------g~~~~--~k~g~~~~--~if~~p~ 264 (266)
+++|+||||+||++|++++||+|+|||+. + |.+ | +|||||.+ +||-.++
T Consensus 255 ~~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLd-G~~~KMSKS~~nsaI~L~D~ 317 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQ-GAQTKMSASDPNSSIFLTDT 317 (437)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETT-EEEEECCTTSSSSCCBTTCC
T ss_pred CCceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCC-CCccccCCCCCCCeeeccCC
Confidence 67899999999999999999999999931 1 111 5 79999965 5775443
No 31
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=3.7e-41 Score=328.80 Aligned_cols=178 Identities=20% Similarity=0.296 Sum_probs=150.6
Q ss_pred CCCceEEEecCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
++++++|+||+|| |.||||||++++ .+| ||+ |++++|+|||+|++++ ..+++++++++++++++|+|+|+||+
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN 230 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4689999999999 789999999987 556 896 8999999999999998 46899999999999999999999999
Q ss_pred ceEEEEcccchh----hhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh-----------
Q 024523 151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----------- 214 (266)
Q Consensus 151 Kt~if~qSd~~~----~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~----------- 214 (266)
|++||.||+|++ +.++.| +|+|+++++++.++++ .+++++|+|+||+||||||++
T Consensus 231 k~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~ 301 (477)
T 1r6t_A 231 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT 301 (477)
T ss_dssp SEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred ceEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhcccc
Confidence 999999999975 666665 4557777777766654 467999999999999999999
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhh--CCC--c-----c--cccCCCCC--ceeccCC
Q 024523 215 YQSDFVPVGEDQKQHLELTRELAERVNYLY--GGR--K-----W--KKLGGRGG--AIFKVDS 264 (266)
Q Consensus 215 l~adlvpvG~DQ~~hleLaRdiA~r~n~~y--g~~--~-----~--~k~g~~~~--~if~~p~ 264 (266)
+++|+||||.||++|++++||+|+|||+.- +.. . | +|||||.+ +||-.++
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred CCceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 578999999999999999999999999311 100 0 5 79999965 5775443
No 32
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=322.28 Aligned_cols=184 Identities=20% Similarity=0.157 Sum_probs=146.3
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CC-CHHHHHHHHH----HHHHHHHHcCcCC
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKATR----ETAAIYLACGIDN 149 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~-~~e~ir~~~~----~~~~~~lA~GlDp 149 (266)
.+++++|+||+|||.||||||+++++.|..+|.|++++++|+|+||+|+ +. ..+.++.+++ .+.+.|+|+|+||
T Consensus 37 ~~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp 116 (394)
T 2dlc_X 37 KRHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPI 116 (394)
T ss_dssp CSCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4577999999999999999999999888888889999999999999997 43 4556666653 3445788999999
Q ss_pred CceEEEEcccc---hhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523 150 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (266)
Q Consensus 150 ~Kt~if~qSd~---~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ 226 (266)
+|+.||+||+| ++|.++.|.++|.+|+++++|+.+ ++.+ . .+++++|+|+||+|||||++++++|+||+|.||
T Consensus 117 ~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~--~~~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ 192 (394)
T 2dlc_X 117 EKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGA--DVVK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQ 192 (394)
T ss_dssp TTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTT--TTSC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGG
T ss_pred hHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccH--hhhc-c-cCCccceeeechhHhhccHhhhCCCEEecCccH
Confidence 99999999999 568889999999999999998764 2222 2 257899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhh----------hCCCcccccCCCCC--ceeccC
Q 024523 227 KQHLELTRELAERVNYL----------YGGRKWKKLGGRGG--AIFKVD 263 (266)
Q Consensus 227 ~~hleLaRdiA~r~n~~----------yg~~~~~k~g~~~~--~if~~p 263 (266)
++|++++||++++||+. -|.+.++||+||.+ +||-..
T Consensus 193 ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D 241 (394)
T 2dlc_X 193 RKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLLE 241 (394)
T ss_dssp HHHHHHHHHHGGGGTCCCCEEEEECCCCCCC----------CCSCBTTC
T ss_pred HHHHHHHHHHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCCEEeccC
Confidence 99999999999999842 12222689999866 377443
No 33
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=5e-41 Score=321.25 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=142.3
Q ss_pred CCCceEEEecCCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 76 ~~~~~iytGi~PTG-~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~ 150 (266)
++++++|+|++||| .||||||++++ .+| ||+ ++.++|+|||+|++++ +.+++++++++++++++|+|+|+||+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE 153 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 56899999999999 69999999985 556 998 6778999999988876 67999999999999999999999999
Q ss_pred ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHH--------hhhhcC----C
Q 024523 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S 217 (266)
Q Consensus 151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAA--------DIl~l~----a 217 (266)
|++||.||+|.+. |+ ..+.+|.|+.+++++.++++ .+++++|+|+||+|||| ||+.++ +
T Consensus 154 kt~i~~ns~~~~~----~~----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~ 225 (395)
T 3i05_A 154 LTFIFRDFDYMGC----MY----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF 225 (395)
T ss_dssp SEEEEEHHHHTTT----SH----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred ceEEEEcCHHHHH----HH----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence 9999999999761 21 34568889999999888776 56899999999999999 566788 9
Q ss_pred CEEEecCcchHHHHHHHHHHHHhhhh--hCCCc-------c--cccCCCCC-ceec
Q 024523 218 DFVPVGEDQKQHLELTRELAERVNYL--YGGRK-------W--KKLGGRGG-AIFK 261 (266)
Q Consensus 218 dlvpvG~DQ~~hleLaRdiA~r~n~~--yg~~~-------~--~k~g~~~~-~if~ 261 (266)
|+||||+||++|++++||+|+|||+. ++... | +||+||.+ +||-
T Consensus 226 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L 281 (395)
T 3i05_A 226 CLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLL 281 (395)
T ss_dssp EEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-------------CCBT
T ss_pred eEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCCCCcccC
Confidence 99999999999999999999999852 11110 5 79999977 7773
No 34
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=2e-40 Score=316.89 Aligned_cols=175 Identities=20% Similarity=0.295 Sum_probs=138.2
Q ss_pred CCCceEEEecCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec--CCCHHHHHHHHHHHHHHHHHcCcCC
Q 024523 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDN 149 (266)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~--~~~~e~ir~~~~~~~~~~lA~GlDp 149 (266)
++++++|+|++|| |.||||||++++ .+| ||+ ++.++|+|||+|++++ +.+++++++++++++++|+|+|+||
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp 149 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDP 149 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4589999999999 579999999998 455 999 5678999999999765 4699999999999999999999999
Q ss_pred CceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh-------c-C---C
Q 024523 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---S 217 (266)
Q Consensus 150 ~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~-------l-~---a 217 (266)
+|++||+||+|.+. + ..++.|+.|+.+++++.+..+ ++++++|+|+||+||||||++ + + +
T Consensus 150 ~kt~i~~ns~~~~~--~------~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~ 221 (393)
T 3hv0_A 150 ELTFIFTNLEYIAE--L------YPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIH 221 (393)
T ss_dssp TTEEEEEHHHHHHH--H------HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCC
T ss_pred cceEEEECCHHHHH--H------HHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCc
Confidence 99999999999752 1 223457778888888877766 578999999999999999973 2 3 4
Q ss_pred CEEEecCcchHHHHHHHHHHHHhhhh--hCCCc-------c--cccCCCCC--cee
Q 024523 218 DFVPVGEDQKQHLELTRELAERVNYL--YGGRK-------W--KKLGGRGG--AIF 260 (266)
Q Consensus 218 dlvpvG~DQ~~hleLaRdiA~r~n~~--yg~~~-------~--~k~g~~~~--~if 260 (266)
|+||||+||++|++++||+|+|||+. +.... | +||+||.+ +||
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~ 277 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIF 277 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCB
T ss_pred eecccccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEe
Confidence 88999999999999999999999842 11110 5 79999875 576
No 35
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=4.4e-39 Score=311.98 Aligned_cols=174 Identities=24% Similarity=0.347 Sum_probs=147.9
Q ss_pred CCCceEEEecCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeecC--CCHHHHHHHHHHHHHHHHHcCcCC
Q 024523 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDN 149 (266)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~~--~~~e~ir~~~~~~~~~~lA~GlDp 149 (266)
++++++|+|++|| |.||||||++++ .+| ||+ ++.++|+|+|+|+++++ .+++++++++++++++|+|+||||
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDp 166 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDP 166 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred CCCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4689999999999 789999999988 556 998 57789999999999874 699999999999999999999999
Q ss_pred CceEEEEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCC---------
Q 024523 150 SKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS--------- 217 (266)
Q Consensus 150 ~Kt~if~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~a--------- 217 (266)
+|++||+||+|++ +.++.|.+++.+|++++.+...| .+++++|+|+||+|||||||++..
T Consensus 167 ekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f--------~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp 238 (451)
T 3foc_A 167 DKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF--------SNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVP 238 (451)
T ss_dssp GGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCC--------CSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCB
T ss_pred CceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhccc--------CCCCchHHHhhHHHHHHHHHHhhcCCCCccccc
Confidence 9999999999965 77888888888888877766543 267999999999999999984433
Q ss_pred --------------------------------------------------CEEEecCcchHHHHHHHHHHHHhhhhh---
Q 024523 218 --------------------------------------------------DFVPVGEDQKQHLELTRELAERVNYLY--- 244 (266)
Q Consensus 218 --------------------------------------------------dlvpvG~DQ~~hleLaRdiA~r~n~~y--- 244 (266)
|+||||+||+||+||+||+|+|||+.-
T Consensus 239 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~ 318 (451)
T 3foc_A 239 LPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAY 318 (451)
T ss_dssp CC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEE
T ss_pred cccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCee
Confidence 299999999999999999999999521
Q ss_pred -------CCCcc--cccCCCCC--cee
Q 024523 245 -------GGRKW--KKLGGRGG--AIF 260 (266)
Q Consensus 245 -------g~~~~--~k~g~~~~--~if 260 (266)
|.+ | +||.||.+ .||
T Consensus 319 ~~~~~l~gLd-G~~~KMSKS~~ns~I~ 344 (451)
T 3foc_A 319 LLGKFLPGLQ-GSGTKMSASDPNSAIY 344 (451)
T ss_dssp EEECCCCBTT-BTTCCCCTTCGGGSCB
T ss_pred ecCCcccCCC-CCCCccCCCCCCCeee
Confidence 211 3 49999875 465
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=99.97 E-value=5.3e-32 Score=274.09 Aligned_cols=158 Identities=12% Similarity=0.074 Sum_probs=136.3
Q ss_pred CCCCCceEEEecCCCCcchhhhHHHHHHHHHHHh-c--cCcEEEEEecceeeec-C--CCHHHHHHHHHHHHHHHHHcCc
Q 024523 74 SSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLACGI 147 (266)
Q Consensus 74 ~~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ-~--g~~v~ilIADlhA~~~-~--~~~e~ir~~~~~~~~~~lA~Gl 147 (266)
....+..++++- |||.+||||++++++.+.++| . |++++|+||||||+++ + .+++++++++.|++++|+|+|+
T Consensus 378 ~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~ 456 (690)
T 3p0j_A 378 APAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGL 456 (690)
T ss_dssp CCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 344567788888 999999999999876477654 3 7899999999999999 4 5899999999999999999999
Q ss_pred CCCceEEEEcccchh-----hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEe
Q 024523 148 DNSKASVFVQSHVRA-----HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (266)
Q Consensus 148 Dp~Kt~if~qSd~~~-----~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpv 222 (266)
|| |++|++||+|.. ++.+.+.+++.+|++|+.+.. +.+++++|+|+||+||+|||+++++|++||
T Consensus 457 d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi~~g 526 (690)
T 3p0j_A 457 PS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSHVIS 526 (690)
T ss_dssp CT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred Cc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCEEec
Confidence 97 899999999753 444444578889998877643 237889999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhhh
Q 024523 223 GEDQKQHLELTRELAERVNY 242 (266)
Q Consensus 223 G~DQ~~hleLaRdiA~r~n~ 242 (266)
|+||++|++|+||+|+++++
T Consensus 527 G~DQ~~~~~LaRd~~~~~~~ 546 (690)
T 3p0j_A 527 TSLDGHINAFAREYTKERID 546 (690)
T ss_dssp CSTTTTTTHHHHHHTTTCSE
T ss_pred ccccHHHHHHHHHHHHhccC
Confidence 99999999999999999764
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.53 E-value=6.4e-08 Score=89.17 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=96.6
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-
Q 024523 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (266)
Q Consensus 85 i~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~- 162 (266)
=.|||.+||||+..++.+|...+. +...++-|.|. ++ .....+....+.+++.++|++++.. +++||+..+
T Consensus 12 PsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt----D~--~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~~ 84 (298)
T 1nzj_A 12 PSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI----DP--PREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHDA 84 (298)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS----CG--GGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecC----Cc--hhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHHH
Confidence 357799999999999989987776 66677778873 21 1234567788899999999999864 789999644
Q ss_pred hhHHHH-------HHhccCCHHHHhchhh-HHHhhhh---cC---------------CCCccchhhhchH-HHHHhhhhc
Q 024523 163 HVELMW-------LLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILLY 215 (266)
Q Consensus 163 ~~eL~w-------~Ls~~~tv~rL~R~~~-~ke~~~~---~g---------------~~~i~~g~l~YPv-LQAADIl~l 215 (266)
|.+..- .+.|.+|-.++++... |....+. .+ -++.-.|.+.++. .+.-|.+++
T Consensus 85 y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~ 164 (298)
T 1nzj_A 85 YREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIH 164 (298)
T ss_dssp HHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEE
T ss_pred HHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEE
Confidence 222211 1578888888876310 0000000 00 0011234444554 355566665
Q ss_pred CCCE-------------------EEecCcchHHHHHHHHHHHHhhhhh----------CCCcccccCCCCCce
Q 024523 216 QSDF-------------------VPVGEDQKQHLELTRELAERVNYLY----------GGRKWKKLGGRGGAI 259 (266)
Q Consensus 216 ~adl-------------------vpvG~DQ~~hleLaRdiA~r~n~~y----------g~~~~~k~g~~~~~i 259 (266)
++|- |.-|.|+..+...-..+.+.++... + ..++||-||.+..
T Consensus 165 R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~-~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 165 RRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALN-PQGAKLSKQNHAP 236 (298)
T ss_dssp CTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC--------------
T ss_pred CCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeEC-CCCCcccccCCcc
Confidence 5444 4449999988877777778776432 1 1167888887753
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.42 E-value=2.7e-07 Score=90.52 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=98.2
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce-------EEEE
Q 024523 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFV 156 (266)
Q Consensus 85 i~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt-------~if~ 156 (266)
=.|||.|||||+..++-+|..-+. |.++++=|-|. ++ .....+....+.+++..+|||++.- .+|+
T Consensus 13 PsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~ 86 (498)
T 2ja2_A 13 PSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYR 86 (498)
T ss_dssp CCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCee
Confidence 357799999999999989987776 55544447775 21 1234567778888899999999863 5899
Q ss_pred cccchhhh-HHHH-------HHhccCCHHHHhchh---------hHH---------Hhhhhc--CC--------C--Cc-
Q 024523 157 QSHVRAHV-ELMW-------LLSSATPIGWLNKMI---------QFK---------EKSHKA--GG--------E--NV- 197 (266)
Q Consensus 157 qSd~~~~~-eL~w-------~Ls~~~tv~rL~R~~---------~~k---------e~~~~~--g~--------~--~i- 197 (266)
||+..+.. +..- .+.|.+|-.+|+++- .|. +..+.. |. . .+
T Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 166 (498)
T 2ja2_A 87 QSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLA 166 (498)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceE
Confidence 99975532 2111 158899988886542 111 100000 10 0 00
Q ss_pred ----cchhhhchHHHHHhhhhcC-------------------CCEEEecCcchHHHHHHHHHHHHhhh
Q 024523 198 ----GVALLTYPVLMASDILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNY 242 (266)
Q Consensus 198 ----~~g~l~YPvLQAADIl~l~-------------------adlvpvG~DQ~~hleLaRdiA~r~n~ 242 (266)
-.|.+.|+.-+.-|.+.++ .++|.-|.|+..+...-+.+.+.++.
T Consensus 167 ~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~ 234 (498)
T 2ja2_A 167 WNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR 234 (498)
T ss_dssp EEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH
T ss_pred EEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh
Confidence 1244566655556666554 45555599999999999999999954
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.18 E-value=5.6e-07 Score=87.65 Aligned_cols=167 Identities=17% Similarity=0.112 Sum_probs=108.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceE-------EEEc
Q 024523 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (266)
Q Consensus 86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~-------if~q 157 (266)
.|||.|||||+..++-+|..-+. |..+++=|-|. ++ .....+....+.+++..+|++++... .|+|
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q 82 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT----DR--ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ 82 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CT--TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CC--cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence 57899999999999988876666 66666667665 21 12244567788889999999998653 5899
Q ss_pred ccchh-hhHHHH-------HHhccCCHHHHhchh-------------hHHHhhhhc--CC---------C--Cc-----c
Q 024523 158 SHVRA-HVELMW-------LLSSATPIGWLNKMI-------------QFKEKSHKA--GG---------E--NV-----G 198 (266)
Q Consensus 158 Sd~~~-~~eL~w-------~Ls~~~tv~rL~R~~-------------~~ke~~~~~--g~---------~--~i-----~ 198 (266)
|+..+ |.+..- .+.|.+|-.+++++- +..+..+.. |. . .+ -
T Consensus 83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~ 162 (468)
T 1j09_A 83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL 162 (468)
T ss_dssp GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence 99654 222221 147888888876531 222211110 10 0 11 1
Q ss_pred chhhhchHHHHHhhhhcCCCEEEe-------------------cCcchHHHHHHHHHHHHhhhhh---CC------Cccc
Q 024523 199 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLY---GG------RKWK 250 (266)
Q Consensus 199 ~g~l~YPvLQAADIl~l~adlvpv-------------------G~DQ~~hleLaRdiA~r~n~~y---g~------~~~~ 250 (266)
-|.+.+|..+.-|.+.+++|..|. |.|+..+...-.-+.+.++... +. ..++
T Consensus 163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g~ 242 (468)
T 1j09_A 163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKT 242 (468)
T ss_dssp TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSC
T ss_pred ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCCC
Confidence 345777777777877766555555 9999999999999999987532 11 1157
Q ss_pred ccCCCCCc
Q 024523 251 KLGGRGGA 258 (266)
Q Consensus 251 k~g~~~~~ 258 (266)
||-||.+.
T Consensus 243 klSKR~g~ 250 (468)
T 1j09_A 243 KISKRKSH 250 (468)
T ss_dssp BCCTTTSC
T ss_pred ccccccch
Confidence 88887763
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.12 E-value=6.4e-07 Score=87.67 Aligned_cols=174 Identities=17% Similarity=0.147 Sum_probs=105.3
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceE----
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~---- 153 (266)
.+.=..=.|||.|||||+..++.+|..-+. |.++++-|-|. ++ .....+....+.+++..+|++++..-
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC----Cc--ccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 344455567899999999999989977666 66777767775 21 12345677788889999999998643
Q ss_pred ---EEEcccchh-hhHHHHH-------HhccCCHHHHhch--hhHHH---hhhh-------cC-C-CC-----ccchhhh
Q 024523 154 ---VFVQSHVRA-HVELMWL-------LSSATPIGWLNKM--IQFKE---KSHK-------AG-G-EN-----VGVALLT 203 (266)
Q Consensus 154 ---if~qSd~~~-~~eL~w~-------Ls~~~tv~rL~R~--~~~ke---~~~~-------~g-~-~~-----i~~g~l~ 203 (266)
.|+||+..+ |.+..-. +.|.+|-.+|++. ..|.. ..+. +. + .. .-.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 689999654 2222111 3566666655542 00100 0000 00 0 00 0123333
Q ss_pred chHHHHHhhhh-------------------cCCCEEEecCcchHHHHHHHHHHHHhhhh---hCC------CcccccCCC
Q 024523 204 YPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYL---YGG------RKWKKLGGR 255 (266)
Q Consensus 204 YPvLQAADIl~-------------------l~adlvpvG~DQ~~hleLaRdiA~r~n~~---yg~------~~~~k~g~~ 255 (266)
++.-+.-|.+. .+.++|.-|.|+..+...-..+.+.|+.. |+. ..++||-||
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g~KLSKR 259 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR 259 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTSSBCCTT
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCCCcccCc
Confidence 33333333333 35677777999999999999999998753 221 116788888
Q ss_pred CCc
Q 024523 256 GGA 258 (266)
Q Consensus 256 ~~~ 258 (266)
.+.
T Consensus 260 ~g~ 262 (488)
T 3afh_A 260 HGA 262 (488)
T ss_dssp TSC
T ss_pred CCc
Confidence 774
No 41
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.93 E-value=3.5e-05 Score=75.45 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=102.9
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh
Q 024523 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (266)
Q Consensus 84 Gi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~ 162 (266)
.=.|||.+||||+..++-+|..-+. +.++++=|-|.= + .....+.+..+.+++..+|++++. ..|+||+..+
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD----~--~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~ 79 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTD----R--ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLD 79 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCS----S--SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCC----c--cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHH
Confidence 3357899999999999888876665 666777777762 1 112456778888899999999885 4799999643
Q ss_pred -hhHHHHH-------HhccCCHHHHhchh----------hHH---------Hhhh----------hcC-CCC--c-----
Q 024523 163 -HVELMWL-------LSSATPIGWLNKMI----------QFK---------EKSH----------KAG-GEN--V----- 197 (266)
Q Consensus 163 -~~eL~w~-------Ls~~~tv~rL~R~~----------~~k---------e~~~----------~~g-~~~--i----- 197 (266)
|.+..-. +.|.++-.+|+.+- .|. +... ++. ++. +
T Consensus 80 ~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~ 159 (492)
T 2cfo_A 80 LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDL 159 (492)
T ss_dssp HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEET
T ss_pred HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEec
Confidence 3332222 35777776665421 010 0000 011 000 0
Q ss_pred cchhhhchHHH-------------------------HHhhhhcCCCEEEecCcchHHHHHHHHHHHHhhhh---hCC---
Q 024523 198 GVALLTYPVLM-------------------------ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL---YGG--- 246 (266)
Q Consensus 198 ~~g~l~YPvLQ-------------------------AADIl~l~adlvpvG~DQ~~hleLaRdiA~r~n~~---yg~--- 246 (266)
--|.+.++.-+ +.|....+.|+|..|.|+..+-..-..+.+.+|.. |..
T Consensus 160 v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~pl 239 (492)
T 2cfo_A 160 VRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPL 239 (492)
T ss_dssp TTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred ceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeee
Confidence 01223333333 33333445667889999999999998888988753 211
Q ss_pred ---CcccccCCCCCc
Q 024523 247 ---RKWKKLGGRGGA 258 (266)
Q Consensus 247 ---~~~~k~g~~~~~ 258 (266)
.-++||-||.+.
T Consensus 240 il~~~g~KLSKr~g~ 254 (492)
T 2cfo_A 240 ILNSTGQKLSKRDGV 254 (492)
T ss_dssp EECSSSSBCCTTSSC
T ss_pred EECCCCCEecccCCc
Confidence 016888888874
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.92 E-value=6.9e-07 Score=89.31 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=104.1
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce----
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA---- 152 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt---- 152 (266)
+.++=..=.|||.|||||+.+++-+|..-+. +.++++-|.|. ++. ....+....+.+++..+|++++..
T Consensus 129 ~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~~--r~~~~~~~~I~~dL~wlGl~~D~~~~~g 202 (592)
T 3al0_C 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DTE--RSSREYEQQILESLRWCGLDWDEGPDIG 202 (592)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CSS--SCCHHHHHHHHHHHHHTTCCCSBBTTTB
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Chh--hccHHHHHHHHHHHHHcCCCCCCCCCcC
Confidence 3445455678899999999999988876665 67777778773 321 234556777888899999999864
Q ss_pred ---EEEEcccchh-hhHHHHH-------HhccCCHHHHhch--hhHH---Hhhh-------hcC-C------CCccchhh
Q 024523 153 ---SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKM--IQFK---EKSH-------KAG-G------ENVGVALL 202 (266)
Q Consensus 153 ---~if~qSd~~~-~~eL~w~-------Ls~~~tv~rL~R~--~~~k---e~~~-------~~g-~------~~i~~g~l 202 (266)
-.|+||+..+ |.+..-. +.|.+|-.+|++. ..|. +..+ ++. + .+.-.|.+
T Consensus 203 G~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~ 282 (592)
T 3al0_C 203 GDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYM 282 (592)
T ss_dssp CTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSE
T ss_pred CCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeeccccee
Confidence 3689999654 2222111 3555555444431 0000 0000 000 0 00112333
Q ss_pred hchHHHHHhhhh-------------------cCCCEEEecCcchHHHHHHHHHHHHhhhh---hCC------CcccccCC
Q 024523 203 TYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYL---YGG------RKWKKLGG 254 (266)
Q Consensus 203 ~YPvLQAADIl~-------------------l~adlvpvG~DQ~~hleLaRdiA~r~n~~---yg~------~~~~k~g~ 254 (266)
.++.-+.-|.+. .+.++|.-|.|+..+...-+.+.+.|+.. |+. ..++||-|
T Consensus 283 ~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g~KLSK 362 (592)
T 3al0_C 283 EFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSK 362 (592)
T ss_dssp ECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTSSBCCT
T ss_pred eeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCCCcccc
Confidence 333333333333 35666677999999999999999888753 221 01678888
Q ss_pred CCCc
Q 024523 255 RGGA 258 (266)
Q Consensus 255 ~~~~ 258 (266)
|.+.
T Consensus 363 R~g~ 366 (592)
T 3al0_C 363 RHGA 366 (592)
T ss_dssp TTCS
T ss_pred cCCc
Confidence 8774
No 43
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=96.83 E-value=0.0036 Score=61.31 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=59.3
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~ 156 (266)
+.+.=..=.|||.+||||+..++-+|..-+. +.+.++=|-| + ++ .....+....+.+++..+|++++. ..|+
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieD-t---D~--~R~~~~~~~~i~~dl~wlGl~~d~-~~~~ 97 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIED-T---DV--ERSSQEAVDAILEGMAWLGLDYDE-GPYY 97 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECC-C---CG--GGCCHHHHHHHHHHHHHTTCCCSE-EEEE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCC-C---Cc--ccccHHHHHHHHHHHHHcCCCCCC-CCcc
Confidence 3455555567799999999999888876555 4455554554 2 21 123456778888899999999985 4789
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHhc
Q 024523 157 QSHVRA-HVELMWL-------LSSATPIGWLNK 181 (266)
Q Consensus 157 qSd~~~-~~eL~w~-------Ls~~~tv~rL~R 181 (266)
||+..+ |.+..-. +-|.+|-.+|+.
T Consensus 98 qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~ 130 (490)
T 4g6z_A 98 QMQRMDRYREVLAQMQEKGLVYPCYMSTEELDA 130 (490)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred cccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHH
Confidence 999533 3332221 467777776654
No 44
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.36 E-value=0.0048 Score=61.26 Aligned_cols=166 Identities=19% Similarity=0.156 Sum_probs=85.7
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh
Q 024523 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (266)
Q Consensus 84 Gi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~ 162 (266)
.=.|||.+||||...++-+|..-+. +..+++=|-|. ++ .....+.+..+.+++..+|++++ ++++||+..+
T Consensus 102 aPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt----D~--~R~~~e~~~~I~edL~wLGl~wd--~~~~qSdr~~ 173 (553)
T 3aii_A 102 APNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT----DP--RRVDPEAYDMIPADLEWLGVEWD--ETVIQSDRME 173 (553)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CG--GGCCTTHHHHHHHHHHHHTCCCS--EEEEGGGGHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCC--CCcccccCHH
Confidence 3355699999999988867754443 44555556554 21 12234567788889999999997 6899999643
Q ss_pred -hhHHHHH-------HhccCCHHHHhch-----------hhH-------HHhhhh--------cC-C---CCccc-----
Q 024523 163 -HVELMWL-------LSSATPIGWLNKM-----------IQF-------KEKSHK--------AG-G---ENVGV----- 199 (266)
Q Consensus 163 -~~eL~w~-------Ls~~~tv~rL~R~-----------~~~-------ke~~~~--------~g-~---~~i~~----- 199 (266)
+.+..-. +-|.++-.++... .+- .++..- +. + .+.++
T Consensus 174 ~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl 253 (553)
T 3aii_A 174 TYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVS 253 (553)
T ss_dssp HHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEE
T ss_pred HHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEE
Confidence 3332222 3456665555321 011 111110 00 0 00010
Q ss_pred -----------hh--hhchHHHH---HhhhhcCCCEEEecCcchHHHHHHHHHHHHhhhhh------CC--CcccccCCC
Q 024523 200 -----------AL--LTYPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY------GG--RKWKKLGGR 255 (266)
Q Consensus 200 -----------g~--l~YPvLQA---ADIl~l~adlvpvG~DQ~~hleLaRdiA~r~n~~y------g~--~~~~k~g~~ 255 (266)
|- ..||..+= .|.-..+.+++..|.|...+-..-.-+...++..+ +. ..++||-||
T Consensus 254 ~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~KLSKR 333 (553)
T 3aii_A 254 MRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTS 333 (553)
T ss_dssp EEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC-------CH
T ss_pred EEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCceechh
Confidence 11 13555543 34445689999999999988777776677776421 10 015677776
Q ss_pred CC
Q 024523 256 GG 257 (266)
Q Consensus 256 ~~ 257 (266)
.+
T Consensus 334 ~~ 335 (553)
T 3aii_A 334 GA 335 (553)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 45
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=96.29 E-value=0.011 Score=57.37 Aligned_cols=78 Identities=5% Similarity=-0.050 Sum_probs=51.6
Q ss_pred CCCCCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecce-e--eecC-----CCH-HHHHHHHHHHH
Q 024523 74 SSSVKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLH-A--ITLP-----YDT-QQLSKATRETA 139 (266)
Q Consensus 74 ~~~~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlh-A--~~~~-----~~~-e~ir~~~~~~~ 139 (266)
+..++++|-|. --++|.+||||..+.+ .-+.+++. |++|.+.-+.+| . +... .++ +-+.+++..+.
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~ 85 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFK 85 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33455666555 4688999999988755 22444444 899877665555 3 2221 244 44567778888
Q ss_pred HHHHHcCcCCCc
Q 024523 140 AIYLACGIDNSK 151 (266)
Q Consensus 140 ~~~lA~GlDp~K 151 (266)
+++.++|++.|.
T Consensus 86 ~~~~~lgi~~D~ 97 (542)
T 3u1f_A 86 KCFEQMDYSIDY 97 (542)
T ss_dssp HHHHHHTCCCSE
T ss_pred HHHHHhCCccCc
Confidence 999999998874
No 46
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=95.84 E-value=0.013 Score=58.22 Aligned_cols=94 Identities=13% Similarity=-0.020 Sum_probs=60.0
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q 157 (266)
.+.=.+=.|||.+||||.-.++-+|..-+. +..+++=|-|. ++ .....+....+.+++..+|++++- ..++|
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT----D~--~R~~~e~~~~I~edL~wLGl~wde-~~~~q 99 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT----NP--VKEDIEYVESIKNDVEWLGFHWSG-NVRYS 99 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CG--GGCCHHHHHHHHHHHHHTTCCCSS-SCEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC----Cc--hhcCHHHHHHHHHHHHHcCCCCCC-CCeeh
Confidence 444556677899999999888867754444 44555556554 21 123456677888899999999853 47899
Q ss_pred ccchh-hhHHHHH-------HhccCCHHHH
Q 024523 158 SHVRA-HVELMWL-------LSSATPIGWL 179 (266)
Q Consensus 158 Sd~~~-~~eL~w~-------Ls~~~tv~rL 179 (266)
|+..+ +.+.+-. +-|.++-.++
T Consensus 100 Ser~~~~~~~a~~Li~~G~AY~c~ct~eel 129 (553)
T 1qtq_A 100 SDYFDQLHAYAIELINKGLAYVDELTPEQI 129 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECCCHHHH
T ss_pred cccHHHHHHHHHHHHHCCCceecCCCHHHH
Confidence 99643 3333222 3466665544
No 47
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=95.62 E-value=0.047 Score=53.40 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=50.1
Q ss_pred CCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeeec-------CCCHHH-HHHHHHHHHHHH
Q 024523 77 VKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (266)
Q Consensus 77 ~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~-------~~~~e~-ir~~~~~~~~~~ 142 (266)
++++|.++ .-|||.+||||....+ .-+.++++ |++|.+. -.|.|..-. ..++++ +.+....+.+++
T Consensus 18 ~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 97 (560)
T 3h99_A 18 KKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDF 97 (560)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 34555555 4556999999988765 22444444 8998655 445554321 124433 455567788899
Q ss_pred HHcCcCCCceEEEEccc
Q 024523 143 LACGIDNSKASVFVQSH 159 (266)
Q Consensus 143 lA~GlDp~Kt~if~qSd 159 (266)
.++|++.+. ++.-++
T Consensus 98 ~~lgi~~d~--~~~t~~ 112 (560)
T 3h99_A 98 AGFNISYDN--YHSTHS 112 (560)
T ss_dssp HHTTCCCSE--EEESSS
T ss_pred HHcCCCCCC--ceeCCC
Confidence 999999873 444443
No 48
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=95.47 E-value=0.013 Score=57.04 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=51.6
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce-----
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt----- 152 (266)
.+....=.|||.|||||.-+++-+|..-+. +...++=|-|.- + ...+.+....+.+++..+|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD----~--~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTD----L--ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSS----C--CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCC----c--cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 456777789999999999988877754333 445544454432 1 1123456667788888999998752
Q ss_pred --EEEEcccch
Q 024523 153 --SVFVQSHVR 161 (266)
Q Consensus 153 --~if~qSd~~ 161 (266)
-.|+||+..
T Consensus 88 ~~g~y~QS~r~ 98 (481)
T 2o5r_A 88 DHGPYRQSERV 98 (481)
T ss_dssp TTCCCBGGGGH
T ss_pred CCCceeeeccH
Confidence 257799843
No 49
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=95.42 E-value=0.08 Score=52.01 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=52.2
Q ss_pred CCCCCCCCCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeec-------CCCHH-HHHHHH
Q 024523 70 PVASSSSVKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKAT 135 (266)
Q Consensus 70 ~~~~~~~~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~-------~~~~e-~ir~~~ 135 (266)
+..++..++++|-+. .-|+|++||||..+++ .-+.++++ |++|.+ .-.|.|..-. ..+++ -+.++.
T Consensus 19 ~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~ 98 (564)
T 3kfl_A 19 PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVS 98 (564)
T ss_dssp -----CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 344444445444333 3588999999987765 33556655 899855 4556664321 02443 345566
Q ss_pred HHHHHHHHHcCcCCCceEEEEccc
Q 024523 136 RETAAIYLACGIDNSKASVFVQSH 159 (266)
Q Consensus 136 ~~~~~~~lA~GlDp~Kt~if~qSd 159 (266)
..+.+++..+|++.+. ++.-++
T Consensus 99 ~~~~~~~~~lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 99 SEFKQCFQEMNYDMNY--FIRTTN 120 (564)
T ss_dssp HHHHHHHHHTTCCCSE--EEETTS
T ss_pred HHHHHHHHHcCCCCCc--cccCCC
Confidence 7788889999998873 445543
No 50
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=95.30 E-value=0.015 Score=56.97 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=56.7
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce------
Q 024523 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA------ 152 (266)
Q Consensus 80 ~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt------ 152 (266)
+.=.-=.|||.|||||...++-+|..-+. |.++++=|=| + ++. ....+....+.+++.-+||++|.-
T Consensus 26 rtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieD-t---D~~--R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~ 99 (512)
T 4gri_A 26 RVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIED-T---DQS--RYSPEAENDLYSSLKWLGISFDEGPVVGGD 99 (512)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCC-C---CTT--SCCHHHHHHHHHHHHHHTCCCSBBTTTBCT
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-C---CCC--cCCHHHHHHHHHHHHHcCCCCCcCCccCCC
Confidence 33333456799999999988878764444 4454443444 2 221 112245556667777889987642
Q ss_pred -EEEEcccchh-hhHHHH-H------HhccCCHHHHhc
Q 024523 153 -SVFVQSHVRA-HVELMW-L------LSSATPIGWLNK 181 (266)
Q Consensus 153 -~if~qSd~~~-~~eL~w-~------Ls~~~tv~rL~R 181 (266)
..|+||+..+ |.+..- + +-|.+|-.++++
T Consensus 100 ~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~ 137 (512)
T 4gri_A 100 YAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLER 137 (512)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHHHcCCccccccchHHHHH
Confidence 3578998543 222211 1 467888776654
No 51
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=95.28 E-value=0.044 Score=56.94 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=60.3
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcc
Q 024523 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (266)
Q Consensus 80 ~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qS 158 (266)
+.=.+=.|||.+||||.-.++-+|..-+. +..+++=|-|. ++. ....+....+.+++..+|++++- .+++||
T Consensus 68 ~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~~--R~~~e~~~~IledL~wLGl~wde-~~~~qS 140 (851)
T 2hz7_A 68 VTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NPE--LARQEYVDSIADDLKWLGLDWGE-HFYYAS 140 (851)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CTT--TCCHHHHHHHHHHHHHHTCCCTT-CEEEGG
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Ccc--cccHHHHHHHHHHHHHcCCCCCC-CcccHh
Confidence 33346677899999999888877754444 44555556664 221 23456777888889999999853 589999
Q ss_pred cchh-hhHHHHH-------HhccCCHHHHh
Q 024523 159 HVRA-HVELMWL-------LSSATPIGWLN 180 (266)
Q Consensus 159 d~~~-~~eL~w~-------Ls~~~tv~rL~ 180 (266)
+..+ |.+..-. +-|.++-.++.
T Consensus 141 er~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 141 DYFDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 9643 3332222 35666665543
No 52
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=95.10 E-value=0.11 Score=50.48 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=49.7
Q ss_pred CceEEEecC--CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeec-------CCCHHH-HHHHHHHHHHHH
Q 024523 78 KKRIVSGVQ--PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (266)
Q Consensus 78 ~~~iytGi~--PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~-------~~~~e~-ir~~~~~~~~~~ 142 (266)
+....+|-= |||.+||||..+++ .-+.++++ |++|.+ .-.|.|..-. ..++++ ..+....+.+++
T Consensus 25 ~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 104 (536)
T 4dlp_A 25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMA 104 (536)
T ss_dssp CEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344455544 55999999987765 33455554 899755 4455554311 124433 455567788888
Q ss_pred HHcCcCCCceEEEEccc
Q 024523 143 LACGIDNSKASVFVQSH 159 (266)
Q Consensus 143 lA~GlDp~Kt~if~qSd 159 (266)
.++|++.+ .++.-++
T Consensus 105 ~~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 105 EVLNSSND--DYIRTSE 119 (536)
T ss_dssp HHTTCCCS--EEEETTS
T ss_pred HHcCCCCC--cceeCCC
Confidence 99999987 4555554
No 53
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=94.79 E-value=0.063 Score=52.29 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=51.4
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHH--HH-Hhc-cCcEE-EEEecceeeec--CC------------C-----------
Q 024523 78 KKRIVSGVQPTGSIHLGNYLGAIKNW--IA-LQN-SYETL-FFIVDLHAITL--PY------------D----------- 127 (266)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~ig~i~k~--~~-LQ~-g~~v~-ilIADlhA~~~--~~------------~----------- 127 (266)
...+.+|--|||.+||||.-.++..+ .+ |.. |+++. ++-.|+|.-.. |. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 45666799999999999988777442 22 333 77764 44466665211 10 0
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCceEEEEccc
Q 024523 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (266)
Q Consensus 128 ~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd 159 (266)
.+-..++...+.+++..+|++++ +|.||+
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 12235567778888889999876 458998
No 54
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=94.78 E-value=0.085 Score=53.54 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=50.7
Q ss_pred CCceEEEec-CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCHH-HHHHHHHHHHHH
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAI 141 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig-~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~e-~ir~~~~~~~~~ 141 (266)
+++.|.+++ -|+|.+||||..+ .+ .-+.+++. |++|.+..+ |.|..-. ..++. -+.++...+.++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~ 81 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 346666766 6789999999987 44 34666666 899876655 4443311 12443 455667778889
Q ss_pred HHHcCcCCCc
Q 024523 142 YLACGIDNSK 151 (266)
Q Consensus 142 ~lA~GlDp~K 151 (266)
+.++|++.|.
T Consensus 82 ~~~lgis~D~ 91 (722)
T 1rqg_A 82 FQRAKISFDF 91 (722)
T ss_dssp HHHHTCCCSE
T ss_pred HHHhCCCCCC
Confidence 9999998874
No 55
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=94.33 E-value=0.18 Score=48.25 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=50.0
Q ss_pred CceEEEecCC--CCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCHH-HHHHHHHHHHHHH
Q 024523 78 KKRIVSGVQP--TGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIY 142 (266)
Q Consensus 78 ~~~iytGi~P--TG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~e-~ir~~~~~~~~~~ 142 (266)
+..+.+|-=| +|.+||||....+ .-+.++++ |++|.+..+ |.|..-. ..++. -..++...+.+++
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 82 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAW 82 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455566555 7999999988755 33555554 888866533 3332211 01343 3445666788899
Q ss_pred HHcCcCCCceEEEEccc
Q 024523 143 LACGIDNSKASVFVQSH 159 (266)
Q Consensus 143 lA~GlDp~Kt~if~qSd 159 (266)
.++|++++ .++..++
T Consensus 83 ~~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 83 DLLGIAYD--DFIRTTE 97 (500)
T ss_dssp HHTTCCCS--EEEETTS
T ss_pred HHhCCcCC--CCcccCC
Confidence 99999887 4566666
No 56
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=94.24 E-value=0.18 Score=48.30 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=50.8
Q ss_pred CceEEEecC--CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeeec-C------CCH-HHHHHHHHHHHHHH
Q 024523 78 KKRIVSGVQ--PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-P------YDT-QQLSKATRETAAIY 142 (266)
Q Consensus 78 ~~~iytGi~--PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlhA~~~-~------~~~-e~ir~~~~~~~~~~ 142 (266)
+..+.+|-= |||.+||||....+ .-+.++++ |++|.+.. .|.|..-. . .++ +-+.++...+.+++
T Consensus 5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 84 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLW 84 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 334555544 66999999987755 33555554 88876553 34443311 0 134 34556677888899
Q ss_pred HHcCcCCCceEEEEccc
Q 024523 143 LACGIDNSKASVFVQSH 159 (266)
Q Consensus 143 lA~GlDp~Kt~if~qSd 159 (266)
.++|++++ .++..++
T Consensus 85 ~~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 85 EFLKIEYT--KFIRTTD 99 (497)
T ss_dssp HHTTCCCS--EEEETTS
T ss_pred HHhCCcCC--CCccCCC
Confidence 99999988 4566776
No 57
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=92.87 E-value=0.33 Score=46.76 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=48.1
Q ss_pred eEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCHHH-HHHHHHHHHHHHHHc
Q 024523 80 RIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIYLAC 145 (266)
Q Consensus 80 ~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~e~-ir~~~~~~~~~~lA~ 145 (266)
.+.|.+ -|+|.+||||....+ .-+.++++ |++|.+..+ |.|..-. ..++.+ .+++..++.+++.++
T Consensus 15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 94 (524)
T 2x1l_A 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL 94 (524)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 334433 457999999987755 33555554 888866433 4333211 023433 455667788899999
Q ss_pred CcCCCceEEEEccc
Q 024523 146 GIDNSKASVFVQSH 159 (266)
Q Consensus 146 GlDp~Kt~if~qSd 159 (266)
|++++ .++..++
T Consensus 95 gi~~d--~~~~t~~ 106 (524)
T 2x1l_A 95 NISFD--RFIRTSD 106 (524)
T ss_dssp TCCCS--EEEETTS
T ss_pred CCcCC--CCeecCC
Confidence 99876 4566665
No 58
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=92.13 E-value=0.28 Score=51.11 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=52.5
Q ss_pred CCCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCH-HHHHHHHHHHHHH
Q 024523 76 SVKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAI 141 (266)
Q Consensus 76 ~~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~-e~ir~~~~~~~~~ 141 (266)
++++++++++ -|||.+||||....+ .-+.+++. |++|.+..+ |.|.+-. ..++ +...+++..+.++
T Consensus 52 ~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~ 131 (880)
T 4arc_A 52 KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQ 131 (880)
T ss_dssp SCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3456777776 678999999988754 22455554 899866544 5554321 1133 3345667778889
Q ss_pred HHHcCcCCCceEEEEccc
Q 024523 142 YLACGIDNSKASVFVQSH 159 (266)
Q Consensus 142 ~lA~GlDp~Kt~if~qSd 159 (266)
+.++|+..|=...|+-++
T Consensus 132 l~~LGis~Dw~~~~~T~d 149 (880)
T 4arc_A 132 LKMLGFGYDWSRELATCT 149 (880)
T ss_dssp HHHTTCCCCGGGCEETTS
T ss_pred HHHhCCCcCCCCCEEcCC
Confidence 999998776333343333
No 59
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=91.05 E-value=1.1 Score=42.27 Aligned_cols=79 Identities=15% Similarity=0.024 Sum_probs=48.9
Q ss_pred eEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeec-------CCCHH-HHHHHHHHHHHHHHHcC
Q 024523 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACG 146 (266)
Q Consensus 80 ~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~-------~~~~e-~ir~~~~~~~~~~lA~G 146 (266)
..++|-=|.|.+||||..+++ .-+.++++ |++|.+ .-.|.|..-. ..++. -..++...+.+++.++|
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 345565666999999987755 33445544 899754 4556664211 02343 34555677888899999
Q ss_pred cC-CCceEEEEcccc
Q 024523 147 ID-NSKASVFVQSHV 160 (266)
Q Consensus 147 lD-p~Kt~if~qSd~ 160 (266)
+. ++ .++..++.
T Consensus 122 i~~~d--~~~r~t~~ 134 (414)
T 3c8z_A 122 VLPPH--DYVAATDA 134 (414)
T ss_dssp CCCCS--EEEEGGGC
T ss_pred CCCCc--ceecccch
Confidence 98 65 34455553
No 60
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=89.78 E-value=0.75 Score=47.70 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=45.3
Q ss_pred CCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeee------------c--CCCH------HH
Q 024523 77 VKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAIT------------L--PYDT------QQ 130 (266)
Q Consensus 77 ~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~------------~--~~~~------e~ 130 (266)
+++.|++| --|||.+|+||.+..+ .-+.+++. |+++.+..+ |-|.+- + +.+. ++
T Consensus 34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~ 113 (862)
T 1gax_A 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLER 113 (862)
T ss_dssp CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHH
T ss_pred CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHH
Confidence 45777776 3568999999988644 23555555 899876655 555440 1 1111 12
Q ss_pred ----HHHHHHHHHHHHHHcCcCCC
Q 024523 131 ----LSKATRETAAIYLACGIDNS 150 (266)
Q Consensus 131 ----ir~~~~~~~~~~lA~GlDp~ 150 (266)
..+++..+.+++..+|+..|
T Consensus 114 ~~~~~~~~~~~~~~q~~rlG~s~D 137 (862)
T 1gax_A 114 VWQWKEESGGTILKQLKRLGASAD 137 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCcccc
Confidence 34445566778888897554
No 61
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=89.66 E-value=0.96 Score=44.28 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=45.0
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecc---------e--eeecC-----CCH-HHHHH
Q 024523 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL---------H--AITLP-----YDT-QQLSK 133 (266)
Q Consensus 78 ~~~iy-tGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il--IADl---------h--A~~~~-----~~~-e~ir~ 133 (266)
+..+| +|-=|.|.+||||..+.+ .-+.++++ |++|.+. |+|. | +++.. .++ +-..+
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 44444 454444999999987755 22444444 8998776 4444 2 23321 244 34566
Q ss_pred HHHHHHHHHHHcCcCCCc
Q 024523 134 ATRETAAIYLACGIDNSK 151 (266)
Q Consensus 134 ~~~~~~~~~lA~GlDp~K 151 (266)
++..+.+++.++|+.++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 778888899999998764
No 62
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=87.73 E-value=0.85 Score=47.33 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=47.2
Q ss_pred CCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCH-HHHHHHHHHHHHHH
Q 024523 77 VKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY 142 (266)
Q Consensus 77 ~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~-e~ir~~~~~~~~~~ 142 (266)
+++++.+| --|+|.+||||....+ .-+.+++. |++|.+..+ |.|.+-. ..++ +-..+++..+.+++
T Consensus 33 ~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~ 112 (878)
T 2v0c_A 33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESL 112 (878)
T ss_dssp -EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35777777 4456999999988754 23445555 898876544 4443311 0133 34566677888899
Q ss_pred HHcCcCCC
Q 024523 143 LACGIDNS 150 (266)
Q Consensus 143 lA~GlDp~ 150 (266)
.++|+..+
T Consensus 113 ~~LGi~~D 120 (878)
T 2v0c_A 113 RLMGILYD 120 (878)
T ss_dssp HHTTCCCC
T ss_pred HHhCCccC
Confidence 99998765
No 63
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=85.27 E-value=1.1 Score=42.97 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=45.3
Q ss_pred ceEE-EecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecceeeec------CCCHHH-HHHHHHHHHHHHHH
Q 024523 79 KRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLHAITL------PYDTQQ-LSKATRETAAIYLA 144 (266)
Q Consensus 79 ~~iy-tGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il--IADlhA~~~------~~~~e~-ir~~~~~~~~~~lA 144 (266)
..+| +|--|.|.+||||.-+++ .-+.++.+ |++|.+. +.|.=.-+. ..++++ ..+....+.+++.+
T Consensus 23 v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~ 102 (461)
T 1li5_A 23 VGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDA 102 (461)
T ss_dssp EEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4444 444444999999987655 33444444 8888655 344321110 023433 44556778888999
Q ss_pred cCcCCCceEEEEccc
Q 024523 145 CGIDNSKASVFVQSH 159 (266)
Q Consensus 145 ~GlDp~Kt~if~qSd 159 (266)
+|+.+.. .+...|+
T Consensus 103 LgI~~~d-~~~r~t~ 116 (461)
T 1li5_A 103 LNILRPD-MEPRATH 116 (461)
T ss_dssp TTCCCCS-BCCBGGG
T ss_pred cCCCCCc-ccccccc
Confidence 9998521 2344555
No 64
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=84.50 E-value=1.1 Score=45.59 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=28.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 024523 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (266)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~ 122 (266)
++.|.+|. -|+|.+||||....+ .-+.+++. |++|.+..+ |.|.+
T Consensus 35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred cEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 45555554 357999999988755 33555555 888876543 44444
No 65
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=82.83 E-value=2.3 Score=41.03 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=44.7
Q ss_pred CceE-EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee--ec-----CCCHH-HHHHHHHHHHHHHH
Q 024523 78 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI--TL-----PYDTQ-QLSKATRETAAIYL 143 (266)
Q Consensus 78 ~~~i-ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~--~~-----~~~~e-~ir~~~~~~~~~~l 143 (266)
++.+ ++|--|.|.+||||....+ .-+.++.+ |++|.+. =.|.|.- +. ..++. -..+++..+.+++.
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~ 104 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEK 104 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444 4677777999999987755 22344433 8887554 3344321 10 01333 34566677888999
Q ss_pred HcCcCCC
Q 024523 144 ACGIDNS 150 (266)
Q Consensus 144 A~GlDp~ 150 (266)
++|+.++
T Consensus 105 ~LgI~~d 111 (462)
T 3tqo_A 105 ALRVLSP 111 (462)
T ss_dssp HHTCCCC
T ss_pred HcCCCCC
Confidence 9999864
No 66
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=82.36 E-value=0.73 Score=45.54 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.7
Q ss_pred ceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 024523 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (266)
Q Consensus 79 ~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i--lIADl 119 (266)
..-|+|--|+|++||||.-+++ .-+.++.+ |++|+. -|.|+
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3447888899999999987755 44666666 888865 47777
No 67
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=81.07 E-value=0.63 Score=47.71 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=31.3
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAI 122 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlhA~ 122 (266)
+++.++.|. -|||.+||||..+.+ .-+.+++. |++|.+.. .|-|.+
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 457777777 788999999988744 22445554 88876554 455544
No 68
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=79.71 E-value=1.2 Score=44.47 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=29.1
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 024523 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (266)
Q Consensus 82 ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i--lIADl 119 (266)
|+|--|+|++|+||.-+++ .-+.++.+ |++|+. -|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 7888999999999987765 44556655 899854 48884
No 69
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=78.60 E-value=1.3 Score=44.22 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=29.1
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 024523 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (266)
Q Consensus 82 ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i--lIADl 119 (266)
|+|--|+|++|+||.-+++ .-+.++.+ |++|+. -|.||
T Consensus 125 ~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred eeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 7899999999999987655 44555555 899865 47887
No 70
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=72.32 E-value=2.4 Score=40.85 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=28.9
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccee
Q 024523 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHA 121 (266)
Q Consensus 82 ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v--~ilIADlhA 121 (266)
|+.--|||++|+||.-+++ ..+.++.+ |++| ..-|.||=.
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 6788899999999987654 33555555 8886 456888643
No 71
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=72.21 E-value=1.7 Score=45.35 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=32.2
Q ss_pred CCCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee
Q 024523 76 SVKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI 122 (266)
Q Consensus 76 ~~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~ 122 (266)
.+++.+.+|. -|||.+||||.+..+ .-+.+++. |+++.+. =-|-|.+
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGl 99 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL 99 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSH
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhH
Confidence 3457788887 678999999988744 22555555 8887554 4566655
No 72
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=58.09 E-value=3.5 Score=43.07 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=30.0
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceee
Q 024523 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAI 122 (266)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlhA~ 122 (266)
+++.++.|. -|||.+|+||.+..+ .-+.+++. |++|.+.. -|-|.+
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~Gl 85 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSS
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCc
Confidence 467888876 357999999988644 22445555 88876543 344443
No 73
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=33.55 E-value=1.1e+02 Score=27.33 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=55.4
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEecceeeec---C-CCHHHHHHHH--------HHHHHHHH
Q 024523 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAITL---P-YDTQQLSKAT--------RETAAIYL 143 (266)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~-v~ilIADlhA~~~---~-~~~e~ir~~~--------~~~~~~~l 143 (266)
+...++.|+-|=-+-|=+.++-.+-.| .+.+|+ |.|+++|.+.--+ . .++.+.++.+ +.+...+.
T Consensus 28 ~g~HallGISpgNsyFs~d~L~~Li~W--a~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~ 105 (257)
T 3oqi_A 28 RRRHVLVGISPFNSRFSEDYIHRLIAW--AVREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALE 105 (257)
T ss_dssp HTCEEEEEECTTSTTCCHHHHHHHHHH--HHHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999998888888888666667 566664 8999999865543 1 2333333222 34555666
Q ss_pred HcCcCCCceEEEEcccch
Q 024523 144 ACGIDNSKASVFVQSHVR 161 (266)
Q Consensus 144 A~GlDp~Kt~if~qSd~~ 161 (266)
++|.+.+ .+..=||+.
T Consensus 106 ~~g~~~~--~v~~~Sd~~ 121 (257)
T 3oqi_A 106 AHGGNPE--DIHTFSDFA 121 (257)
T ss_dssp HHTCCTT--CEEETTTTT
T ss_pred HcCCCcc--cceeHHHhh
Confidence 7798877 677778864
No 74
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=24.95 E-value=1.9e+02 Score=22.45 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHHHHH-Hhcc--CcEEEEEecceeeec--CCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523 99 AIKNWIA-LQNS--YETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (266)
Q Consensus 99 ~i~k~~~-LQ~g--~~v~ilIADlhA~~~--~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if 155 (266)
.|..+.. |++. -...|.|...+.-++ ..+++.-.+++......++..|+++++..+.
T Consensus 40 ~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~ 101 (148)
T 4erh_A 40 ALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISAR 101 (148)
T ss_dssp HHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 4445443 3332 134445443333333 2355566667777777777889999987665
No 75
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=22.49 E-value=1.6e+02 Score=26.15 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEecceeeec----CCCHHHHHHHH--------HHHHHHH
Q 024523 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIY 142 (266)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~-v~ilIADlhA~~~----~~~~e~ir~~~--------~~~~~~~ 142 (266)
.+...++.|+-|=-.-|=+.++-.+-.| .+.+|+ |-|+++|.+.--+ -.++.+.++.+ +.+...|
T Consensus 27 ~~g~HallGVSpgNsyFs~drl~~li~W--a~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral 104 (247)
T 3oqv_A 27 QRGEHALIGISAGNSYFSQKNTVMLLQW--AGQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSL 104 (247)
T ss_dssp -CEEEEEEEEESSCTTCCHHHHHHHHHH--HHHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999998888888888666667 566664 8999999954322 12333332222 3445666
Q ss_pred HHcCcCCCceEEEEcccch
Q 024523 143 LACGIDNSKASVFVQSHVR 161 (266)
Q Consensus 143 lA~GlDp~Kt~if~qSd~~ 161 (266)
.++|.+.++..+..=||+.
T Consensus 105 ~~~~~~~~~~rv~~~Sd~~ 123 (247)
T 3oqv_A 105 ESVGDHAERFRVRSLSELQ 123 (247)
T ss_dssp HHHCTTGGGEEEEEHHHHT
T ss_pred HHhCCCccCceeeeHHHhh
Confidence 7789998888888778864
No 76
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=22.12 E-value=58 Score=23.97 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523 127 DTQQLSKATRETAAIYLACGIDNSK 151 (266)
Q Consensus 127 ~~e~ir~~~~~~~~~~lA~GlDp~K 151 (266)
++++.|+.+.+.. .+++.|+||+.
T Consensus 60 sL~~AR~~a~~~r-~~l~~Gidp~~ 83 (88)
T 3jtz_A 60 SLSDARQQREGIR-KMLALNINLEH 83 (88)
T ss_dssp CHHHHHHHHHHHH-HHHTCC-----
T ss_pred CHHHHHHHHHHHH-HHHHcCCCchh
Confidence 6788888888755 45689999974
Done!