BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024527
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZVW|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|B Chain B, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|C Chain C, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|D Chain D, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|E Chain E, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|F Chain F, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|G Chain G, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|H Chain H, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
Length = 275
Score = 490 bits (1261), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/255 (90%), Positives = 249/255 (97%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLELRLVQGSLLKKVLEA+K+LVNDANFDCS TGFSLQAMDSSHVALV+LLLRSEGFEHY
Sbjct: 21 MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHY 80
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCDRN+SMGMNL N+SKMLKCAGNDDIIT+KADDGSDTVTFMFESPTQDKIADFEMKLMD
Sbjct: 81 RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMD 140
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 180
IDSEHLGIP+AEYH+IVRMPS EF+RICKDL+SIGDTVVISVTKEGVKFST GDIGTANI
Sbjct: 141 IDSEHLGIPDAEYHSIVRMPSGEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANI 200
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
VLRQNTTVDKPE+A +IEM+EPVSL+FALRYMNSFT+ATPLS TVTISLSSELPVVVEYK
Sbjct: 201 VLRQNTTVDKPEDAIVIEMNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYK 260
Query: 241 IAEMGYIRFYLAPKI 255
+AEMGYIR+YLAPKI
Sbjct: 261 VAEMGYIRYYLAPKI 275
>pdb|2ZVV|A Chain A, Crystal Structure Of Proliferating Cellular Nuclear
Antigen 1 And Short Peptide From Human P21
pdb|2ZVV|B Chain B, Crystal Structure Of Proliferating Cellular Nuclear
Antigen 1 And Short Peptide From Human P21
Length = 276
Score = 489 bits (1260), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/256 (90%), Positives = 250/256 (97%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLELRLVQGSLLKKVLE+IK+LVNDANFDCS+TGFSLQAMDSSHVALV+LLLRSEGFEHY
Sbjct: 21 MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHY 80
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCDRN+SMGMNL N+SKMLKCAGNDDIIT+KADDG DTVTFMFESPTQDKIADFEMKLMD
Sbjct: 81 RCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMD 140
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 180
IDSEHLGIP+AEYH+IVRMPS EF+RICKDL+SIGDTVVISVTKEGVKFST GDIGTANI
Sbjct: 141 IDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVISVTKEGVKFSTAGDIGTANI 200
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
VLRQNTTVDKPE+A +IEM EPVSL+FALRYMNSFT+ATPLS+TVTISLSSELPVVVEYK
Sbjct: 201 VLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYK 260
Query: 241 IAEMGYIRFYLAPKIE 256
+AEMGYIR+YLAPKIE
Sbjct: 261 VAEMGYIRYYLAPKIE 276
>pdb|1AXC|A Chain A, Human Pcna
pdb|1U76|A Chain A, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U76|C Chain C, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U76|E Chain E, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U7B|A Chain A, Crystal Structure Of Hpcna Bound To Residues 331-350 Of
The Flap Endonuclease-1 (Fen1)
pdb|1VYJ|A Chain A, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|C Chain C, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|E Chain E, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|G Chain G, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|I Chain I, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|K Chain K, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYM|A Chain A, Native Human Pcna
pdb|1VYM|B Chain B, Native Human Pcna
pdb|1VYM|C Chain C, Native Human Pcna
pdb|1W60|A Chain A, Native Human Pcna
pdb|1W60|B Chain B, Native Human Pcna
pdb|1UL1|A Chain A, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|B Chain B, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|C Chain C, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|2ZVK|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVK|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVK|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVL|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|D Chain D, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|E Chain E, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|F Chain F, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVM|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|2ZVM|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|2ZVM|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|3P87|A Chain A, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|B Chain B, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|C Chain C, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|D Chain D, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|E Chain E, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|F Chain F, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3VKX|A Chain A, Structure Of Pcna
pdb|3TBL|A Chain A, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|3TBL|B Chain B, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|3TBL|C Chain C, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
Length = 261
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 168/259 (64%), Positives = 223/259 (86%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
M E RLVQGS+LKKVLEA+K+L+N+A +D S++G +LQ+MDSSHV+LV L LRSEGF+ Y
Sbjct: 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY 60
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT+ +FE+P Q+K++D+EMKLMD
Sbjct: 61 RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD 120
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 180
+D E LGIPE EY +V+MPS EFARIC+DL+ IGD VVIS K+GVKFS G++G NI
Sbjct: 121 LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI 180
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
L Q + VDK EEA IEM+EPV LTFALRY+N FT+ATPLS+TVT+S+S+++P+VVEYK
Sbjct: 181 KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK 240
Query: 241 IAEMGYIRFYLAPKIEEDE 259
IA+MG++++YLAPKIE++E
Sbjct: 241 IADMGHLKYYLAPKIEDEE 259
>pdb|1AXC|C Chain C, Human Pcna
pdb|1AXC|E Chain E, Human Pcna
Length = 261
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 167/258 (64%), Positives = 222/258 (86%)
Query: 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYR 61
E RLVQGS+LKKVLEA+K+L+N+A +D S++G +LQ+MDSSHV+LV L LRSEGF+ YR
Sbjct: 2 FEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYR 61
Query: 62 CDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI 121
CDRN++MG+NL ++SK+LKCAGN+DIITL+A+D +DT+ +FE+P Q+K++D+EMKLMD+
Sbjct: 62 CDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDL 121
Query: 122 DSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIV 181
D E LGIPE EY +V+MPS EFARIC+DL+ IGD VVIS K+GVKFS G++G NI
Sbjct: 122 DVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIK 181
Query: 182 LRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI 241
L Q + VDK EEA IEM+EPV LTFALRY+N FT+ATPLS+TVT+S+S+++P+VVEYKI
Sbjct: 182 LSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKI 241
Query: 242 AEMGYIRFYLAPKIEEDE 259
A+MG++++YLAPKIE++E
Sbjct: 242 ADMGHLKYYLAPKIEDEE 259
>pdb|3V60|B Chain B, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|B Chain B, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V62|B Chain B, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|E Chain E, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 258
Score = 224 bits (570), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 171/259 (66%), Gaps = 1/259 (0%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ Y
Sbjct: 1 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY 60
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KLMD
Sbjct: 61 RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMD 120
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 180
ID++ LGI E +Y + + +PS+EF++I +DL+ + D++ I +TKE +KF GDIG+ ++
Sbjct: 121 IDADFLGIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSV 180
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
+++ ++ PE + +EM +PV LTF +Y+ + + LS+ V I LSSE P + ++
Sbjct: 181 IIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 240
Query: 241 IAEMGYIRFYLAPKIEEDE 259
+ G+++F+LAPK ++E
Sbjct: 241 LKS-GFLQFFLAPKFNDEE 258
>pdb|3F1W|A Chain A, Crystal Structure Of A Mutant Proliferating Cell Nuclear
Antigen That Blocks Translesion Synthesis
Length = 258
Score = 221 bits (563), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 171/259 (66%), Gaps = 1/259 (0%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ Y
Sbjct: 1 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY 60
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KLMD
Sbjct: 61 RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMD 120
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 180
ID++ L I E +Y + + +PS+EF++I +DL+ + D++ I +TKE +KF GDIG++++
Sbjct: 121 IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSSSV 180
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
+++ ++ PE + +EM +PV LTF +Y+ + + LS+ V I LSSE P + ++
Sbjct: 181 IIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 240
Query: 241 IAEMGYIRFYLAPKIEEDE 259
+ G+++F+LAPK ++E
Sbjct: 241 LKS-GFLQFFLAPKFNDEE 258
>pdb|2OD8|A Chain A, Structure Of A Peptide Derived From Cdc9 Bound To Pcna
pdb|1PLQ|A Chain A, Crystal Structure Of The Eukaryotic Dna Polymerase
Processivity Factor Pcna
pdb|1PLR|A Chain A, Crystal Structure Of The Eukaryotic Dna Polymerase
Processivity Factor Pcna
Length = 258
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 170/259 (65%), Gaps = 1/259 (0%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ Y
Sbjct: 1 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY 60
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KLMD
Sbjct: 61 RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMD 120
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 180
ID++ L I E +Y + + +PS+EF++I +DL+ + D++ I +TKE +KF GDIG+ ++
Sbjct: 121 IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSV 180
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
+++ ++ PE + +EM +PV LTF +Y+ + + LS+ V I LSSE P + ++
Sbjct: 181 IIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 240
Query: 241 IAEMGYIRFYLAPKIEEDE 259
+ G+++F+LAPK ++E
Sbjct: 241 LKS-GFLQFFLAPKFNDEE 258
>pdb|3GPM|A Chain A, Structure Of The Trimeric Form Of The E113g Pcna Mutant
Protein
pdb|3GPN|A Chain A, Structure Of The Non-Trimeric Form Of The E113g Pcna
Mutant Protein
Length = 258
Score = 220 bits (560), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 169/259 (65%), Gaps = 1/259 (0%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ Y
Sbjct: 1 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY 60
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA + +KLMD
Sbjct: 61 RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAGYSLKLMD 120
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 180
ID++ L I E +Y + + +PS+EF++I +DL+ + D++ I +TKE +KF GDIG+ ++
Sbjct: 121 IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSV 180
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
+++ ++ PE + +EM +PV LTF +Y+ + + LS+ V I LSSE P + ++
Sbjct: 181 IIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 240
Query: 241 IAEMGYIRFYLAPKIEEDE 259
+ G+++F+LAPK ++E
Sbjct: 241 LKS-GFLQFFLAPKFNDEE 258
>pdb|3K4X|A Chain A, Eukaryotic Sliding Clamp Pcna Bound To Dna
Length = 798
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 170/258 (65%), Gaps = 1/258 (0%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ Y
Sbjct: 7 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY 66
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KLMD
Sbjct: 67 RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMD 126
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI 180
ID++ L I E +Y + + +PS+EF++I +DL+ + D++ I +TKE +KF GDIG+ ++
Sbjct: 127 IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSV 186
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
+++ ++ PE + +EM +PV LTF +Y+ + + LS+ V I LSSE P + ++
Sbjct: 187 IIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 246
Query: 241 IAEMGYIRFYLAPKIEED 258
+ + G+++F+LAPK ++
Sbjct: 247 L-KSGFLQFFLAPKFNDE 263
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/258 (37%), Positives = 170/258 (65%), Gaps = 1/258 (0%)
Query: 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYR 61
LE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ YR
Sbjct: 542 LEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYR 601
Query: 62 CDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI 121
CD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KLMDI
Sbjct: 602 CDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDI 661
Query: 122 DSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIV 181
D++ L I E +Y + + +PS+EF++I +DL+ + D++ I +TKE +KF GDIG+ +++
Sbjct: 662 DADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVI 721
Query: 182 LRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI 241
++ ++ PE + +EM +PV LTF +Y+ + + LS+ V I LSSE P + ++ +
Sbjct: 722 IKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDL 781
Query: 242 AEMGYIRFYLAPKIEEDE 259
+ G+++F+LAPK ++E
Sbjct: 782 -KSGFLQFFLAPKFNDEE 798
Score = 216 bits (551), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 169/257 (65%), Gaps = 1/257 (0%)
Query: 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYR 61
LE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ YR
Sbjct: 275 LEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYR 334
Query: 62 CDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI 121
CD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KLMDI
Sbjct: 335 CDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDI 394
Query: 122 DSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIV 181
D++ L I E +Y + + +PS+EF++I +DL+ + D++ I +TKE +KF GDIG+ +++
Sbjct: 395 DADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVI 454
Query: 182 LRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI 241
++ ++ PE + +EM +PV LTF +Y+ + + LS+ V I LSSE P + ++ +
Sbjct: 455 IKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDL 514
Query: 242 AEMGYIRFYLAPKIEED 258
+ G+++F+LAPK ++
Sbjct: 515 -KSGFLQFFLAPKFNDE 530
>pdb|1SXJ|F Chain F, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
pdb|1SXJ|G Chain G, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
pdb|1SXJ|H Chain H, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 283
Score = 211 bits (536), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 166/258 (64%), Gaps = 1/258 (0%)
Query: 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYR 61
LE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ YR
Sbjct: 27 LEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYR 86
Query: 62 CDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI 121
CD +++G +L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KL DI
Sbjct: 87 CDHPVTLGXDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLXDI 146
Query: 122 DSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIV 181
D++ L I E +Y + + +PS+EF++I +DL+ + D++ I +TKE +KF GDIG+ +++
Sbjct: 147 DADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIXITKETIKFVADGDIGSGSVI 206
Query: 182 LRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI 241
++ + PE + +E +PV LTF +Y+ + + LS+ V I LSSE P + ++ +
Sbjct: 207 IKPFVDXEHPETSIKLEXDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDL 266
Query: 242 AEMGYIRFYLAPKIEEDE 259
+ G+++F+LAPK ++E
Sbjct: 267 -KSGFLQFFLAPKFNDEE 283
>pdb|3P91|A Chain A, Crystal Structure Of Proliferating Cellular Nuclear
Antigen From Entamoeba Histolytica
Length = 265
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 166/265 (62%), Gaps = 14/265 (5%)
Query: 5 RLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDR 64
+ + +L K+V+E++K ++ NFDCS G ++Q MD+SHV+LV+LL+ ++ F+ ++C +
Sbjct: 10 KFKEAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLK 69
Query: 65 NISMGMNLNNVSKMLKCAGNDDIITL---KADDGSDTVTFMFESPTQDKIADFEMKLMDI 121
I++G+NL ++SK+LK ND + L K DD ++T S +K F + L+DI
Sbjct: 70 PITLGINLTHLSKILKALDNDCGLILDVKKVDDAVLSIT----SEGTNKTMKFGLNLVDI 125
Query: 122 DSEHLGIPEAEYHAIVRMPSAEFARICKDLASIG-DTVVISVTKEGVKFSTRGDIGTANI 180
++E + IPE + AI+ + SAEF +I KD +++G D++ I TK V +T+G + +
Sbjct: 126 EAESVEIPELQSDAIITLSSAEFLKITKDFSALGDDSITIGCTKNEVTLTTKGAMCETCM 185
Query: 181 VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240
L VD IE ++ V+ +FAL+ ++ F ++ PL++ V +SLS + P+++E+K
Sbjct: 186 TLSALENVDS--NGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFK 243
Query: 241 IAEMGYIRFYLAPKIEEDEDETKPQ 265
E ++FYLAPK +E EDE PQ
Sbjct: 244 -GEACVLKFYLAPKFDE-EDE--PQ 264
>pdb|3L0W|A Chain A, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position Two
pdb|3L0X|A Chain A, Structure Of Split Yeast Pcna
pdb|3L10|A Chain A, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position One
Length = 169
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 109/163 (66%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ Y
Sbjct: 7 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY 66
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KLMD
Sbjct: 67 RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMD 126
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVT 163
ID++ L I E +Y + + +PS+EF++I +DL+ + D++ I +T
Sbjct: 127 IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMIT 169
>pdb|3PGE|B Chain B, Structure Of Sumoylated Pcna
Length = 171
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 109/163 (66%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLE + + SL K++++ K+ V NF C G QA+D S V LV+L + E F+ Y
Sbjct: 9 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEY 68
Query: 61 RCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
RCD +++GM+L ++SK+L+C N D +TL AD+ D++ +FE +D+IA++ +KLMD
Sbjct: 69 RCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMD 128
Query: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVT 163
ID++ L I E +Y + + +PS+EF++I +DL+ + D++ I +T
Sbjct: 129 IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMIT 171
>pdb|2NTI|E Chain E, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|B Chain B, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|H Chain H, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2IO4|B Chain B, Crystal Structure Of Pcna12 Dimer From Sulfolobus
Solfataricus.
pdb|2IO4|D Chain D, Crystal Structure Of Pcna12 Dimer From Sulfolobus
Solfataricus
Length = 246
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 124/256 (48%), Gaps = 14/256 (5%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
M++ +++ +L + + +++ANF + G + +D S V + + L S FE +
Sbjct: 1 MMKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGF 60
Query: 61 RCDRNISM-GMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLM 119
+ + G L +V+ +LK DD + L +++ T+TF E FE+ L+
Sbjct: 61 EVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRS-----FELPLI 115
Query: 120 DIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTAN 179
++S E+ ++ + FA I +L+ +G+ + I + + F GD+ TA
Sbjct: 116 QVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAK 175
Query: 180 IVLRQNTTVDKPEEATIIEMHEP-VSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVE 238
+ L + T++E VS ++ + Y+ + T+ S+++ + S++P+ +
Sbjct: 176 VELSTDN-------GTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLR 228
Query: 239 YKIAEMGYIRFYLAPK 254
+K+ + GY FY+AP+
Sbjct: 229 FKLPQEGYGDFYIAPR 244
>pdb|3FDS|D Chain D, Structural Insight Into Recruitment Of Translesion Dna
Polymerase Dpo4 To Sliding Clamp Pcna
Length = 245
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 124/256 (48%), Gaps = 14/256 (5%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
M++ +++ +L + + +++ANF + G + +D S V + + L S FE +
Sbjct: 1 MMKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGF 60
Query: 61 RCDRNISM-GMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLM 119
+ + G L +V+ +LK DD + L +++ T+TF + FE+ L+
Sbjct: 61 EVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTF-----DGEFTRSFELPLI 115
Query: 120 DIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTAN 179
++S E+ ++ + FA I +L+ +G+ + I + + F GD+ TA
Sbjct: 116 QVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAK 175
Query: 180 IVLRQNTTVDKPEEATIIEMHEP-VSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVE 238
+ L + T++E VS ++ + Y+ + T+ S+++ + S++P+ +
Sbjct: 176 VELSTDN-------GTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLR 228
Query: 239 YKIAEMGYIRFYLAPK 254
+K+ + GY FY+AP+
Sbjct: 229 FKLPQEGYGDFYIAPR 244
>pdb|2IZO|B Chain B, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 246
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 124/256 (48%), Gaps = 14/256 (5%)
Query: 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
M++ +++ +L + + +++ANF + G + +D S V + + L S FE +
Sbjct: 1 MMKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGF 60
Query: 61 RCDRNISM-GMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLM 119
+ + G L +V+ +LK DD + L +++ T+TF E FE+ L+
Sbjct: 61 EVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRS-----FELPLI 115
Query: 120 DIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTAN 179
++S E+ ++ + FA I +L+ +G+ + I + + F GD+ TA
Sbjct: 116 QVESTSPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAK 175
Query: 180 IVLRQNTTVDKPEEATIIEMHEP-VSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVE 238
+ L + T++E VS ++ + Y+ + T+ S+++ + S++P+ +
Sbjct: 176 VELSTDN-------GTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLR 228
Query: 239 YKIAEMGYIRFYLAPK 254
+K+ + GY FY+AP+
Sbjct: 229 FKLPQEGYGDFYIAPR 244
>pdb|3IFV|A Chain A, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3IFV|B Chain B, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3IFV|C Chain C, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3HI8|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|B Chain B, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|C Chain C, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|D Chain D, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|E Chain E, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|F Chain F, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
Length = 247
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 20/258 (7%)
Query: 6 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN 65
+V + L+ L+++ LV++ + S++A+D ++V +V L L + FE Y
Sbjct: 5 IVSAATLRDALDSVSVLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGG 64
Query: 66 ISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDS-- 123
+ +G+NL+ + ++ AG D+I L D+ + + + + + + L+D DS
Sbjct: 65 V-IGVNLSRLEEVAGMAGAGDLIHLTLDEETRKLNIRIDGLS------YTLALIDPDSIR 117
Query: 124 EHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISV--TKEGVKFSTRGDIGTANIV 181
+ IP+ + A + + R K + D + + V +E GD ++
Sbjct: 118 QEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDHIRLRVDGAEETFHIEAEGDTDDVDLS 177
Query: 182 LRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI 241
L P + IE SL F+L Y+ +A P VT+ L E PV + Y+I
Sbjct: 178 L-------PPADLISIEAGAADSL-FSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQI 229
Query: 242 AE-MGYIRFYLAPKIEED 258
AE MG I + LAP+I+ D
Sbjct: 230 AEGMGTITYMLAPRIQSD 247
>pdb|2IX2|B Chain B, Crystal Structure Of The Heterotrimeric Pcna From
Sulfolobus Solfataricus
Length = 245
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 118/242 (48%), Gaps = 14/242 (5%)
Query: 15 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISM-GMNLN 73
+L + + +++ANF + G + +D S V + + L S FE + + + G L
Sbjct: 14 ILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLE 73
Query: 74 NVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEY 133
+V+ +LK DD + L +++ T+TF E FE+ L+ ++S E+
Sbjct: 74 DVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRS-----FELPLIQVESTQPPSVNLEF 128
Query: 134 HAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEE 193
++ + FA I +L+ +G+ + I + + F GD+ TA + L +
Sbjct: 129 PFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDN------- 181
Query: 194 ATIIEMHEP-VSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLA 252
T++E VS ++ + Y+ + T+ S+++ + S++P+ + +K+ + GY FY+A
Sbjct: 182 GTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIA 241
Query: 253 PK 254
P+
Sbjct: 242 PR 243
>pdb|1IZ4|A Chain A, Pyrococcus Furiosus Pcna Mutant (Met73leuASP143ALA):
Tetragonal Form
Length = 249
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 13/246 (5%)
Query: 14 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLN 73
++++ +L+++A F + G S++AMD S V L+ L L S F Y ++G+NL+
Sbjct: 15 QLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLD 74
Query: 74 NVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEY 133
++ K+LK D + LK + + F+ + F + L+D++ + +PE +
Sbjct: 75 HLKKILKRGKAKDTLILKKGEEN----FLEITIQGTATRTFRVPLIDVEEMEVDLPELPF 130
Query: 134 HAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI--VLRQNTTVDKP 191
A V + KD + + D++ + G+ I L +D
Sbjct: 131 TAKVVVLGEVLKAAVKDASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLD-- 188
Query: 192 EEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYL 251
IE+ E + + Y++ + ++ VTI +E+P+ +EY I + G + F L
Sbjct: 189 -----IEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLL 243
Query: 252 APKIEE 257
AP++EE
Sbjct: 244 APRVEE 249
>pdb|1GE8|A Chain A, Proliferating Cell Nuclear Antigen (Pcna) Homolog From
Pyrococcus Furiosus
pdb|1ISQ|A Chain A, Pyrococcus Furiosus Pcna Complexed With Rfcl Pip-Box
Peptide
Length = 249
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 13/246 (5%)
Query: 14 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLN 73
++++ +L+++A F + G S++AMD S V L+ L L S F Y ++G+NL+
Sbjct: 15 QLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLD 74
Query: 74 NVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEY 133
++ K+LK D + LK + + F+ + F + L+D++ + +PE +
Sbjct: 75 HLKKILKRGKAKDTLILKKGEEN----FLEITIQGTATRTFRVPLIDVEEMEVDLPELPF 130
Query: 134 HAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI--VLRQNTTVDKP 191
A V + KD + + D++ + G+ I L +D
Sbjct: 131 TAKVVVLGEVLKDAVKDASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLD-- 188
Query: 192 EEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYL 251
IE+ E + + Y++ + ++ VTI +E+P+ +EY I + G + F L
Sbjct: 189 -----IEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLL 243
Query: 252 APKIEE 257
AP++EE
Sbjct: 244 APRVEE 249
>pdb|2HII|B Chain B, Heterotrimeric Pcna Sliding Clamp
pdb|2HII|Y Chain Y, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|B Chain B, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|M Chain M, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|Y Chain Y, Heterotrimeric Pcna Sliding Clamp
Length = 245
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 116/242 (47%), Gaps = 14/242 (5%)
Query: 15 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISM-GMNLN 73
+L + + +++ANF + G + +D S V + + L S FE + + + G L
Sbjct: 14 ILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLE 73
Query: 74 NVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEY 133
+V+ +LK DD + L +++ T+TF E FE+ L+ ++S E+
Sbjct: 74 DVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRS-----FELPLIQVESTQPPSVNLEF 128
Query: 134 HAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEE 193
++ + FA I +L+ +G+ + I + + F GD+ TA + L +
Sbjct: 129 PFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDN------- 181
Query: 194 ATIIEMHEP-VSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLA 252
T++E VS ++ Y+ + T+ S++ + S++P+ + +K+ + GY FY+A
Sbjct: 182 GTLLEASGADVSSSYGXEYVANTTKXRRASDSXELYFGSQIPLKLRFKLPQEGYGDFYIA 241
Query: 253 PK 254
P+
Sbjct: 242 PR 243
>pdb|1RWZ|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From A. Fulgidus
pdb|1RXM|A Chain A, C-Terminal Region Of Fen-1 Bound To A. Fulgidus Pcna
pdb|1RXZ|A Chain A, C-Terminal Region Of A. Fulgidus Fen-1 Complexed With A.
Fulgidus Pcna
pdb|3P83|A Chain A, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
pdb|3P83|B Chain B, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
pdb|3P83|C Chain C, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 245
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 120/260 (46%), Gaps = 26/260 (10%)
Query: 6 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN 65
++ G LLK V AI LV++A G +A+D ++VA+V + + + FE Y D
Sbjct: 5 IMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEE 64
Query: 66 ISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEH 125
++G++++ + + K D++ L +D ES + K E K+ ID
Sbjct: 65 KTIGVDMDRIFDISKSISTKDLVELIVED---------ESTLKVKFGSVEYKVALIDPSA 115
Query: 126 L----GIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIV 181
+ IPE E A + M + EF + I D V+ KEG + +GD+ + IV
Sbjct: 116 IRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDS--IV 173
Query: 182 LRQNTTVDKPEEATIIEMH--EPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEY 239
E +IE + E S+ F++ Y+ F + + +TI L + PV + +
Sbjct: 174 FHMT-------ETELIEFNGGEARSM-FSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVF 225
Query: 240 K-IAEMGYIRFYLAPKIEED 258
+ + + + LAP+IE +
Sbjct: 226 ELVGGRAKVEYILAPRIESE 245
>pdb|1IZ5|A Chain A, Pyrococcus Furiosus Pcna Mutant (Met73leu, Asp143ala,
Asp147ala): Orthorhombic Form
pdb|1IZ5|B Chain B, Pyrococcus Furiosus Pcna Mutant (Met73leu, Asp143ala,
Asp147ala): Orthorhombic Form
Length = 249
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 113/246 (45%), Gaps = 13/246 (5%)
Query: 14 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLN 73
++++ +L+++A F + G S++AMD S V L+ L L S F Y ++G+NL+
Sbjct: 15 QLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLD 74
Query: 74 NVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEY 133
++ K+LK D + LK + + F+ + F + L+D++ + +PE +
Sbjct: 75 HLKKILKRGKAKDTLILKKGEEN----FLEITIQGTATRTFRVPLIDVEEMEVDLPELPF 130
Query: 134 HAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI--VLRQNTTVDKP 191
A V + K + + D++ + G+ I L +D
Sbjct: 131 TAKVVVLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLD-- 188
Query: 192 EEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYL 251
IE+ E + + Y++ + ++ VTI +E+P+ +EY I + G + F L
Sbjct: 189 -----IEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLL 243
Query: 252 APKIEE 257
AP++EE
Sbjct: 244 APRVEE 249
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 35/86 (40%)
Query: 6 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN 65
+V G +LK ++A + + F F ++A + + L L EG
Sbjct: 135 VVLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEE 194
Query: 66 ISMGMNLNNVSKMLKCAGNDDIITLK 91
++ +S M+K G D +T+K
Sbjct: 195 TKSAYGVSYLSDMVKGLGKADEVTIK 220
>pdb|1UD9|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) Homolog From Sulfolobus Tokodaii
pdb|1UD9|B Chain B, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) Homolog From Sulfolobus Tokodaii
pdb|1UD9|C Chain C, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) Homolog From Sulfolobus Tokodaii
pdb|1UD9|D Chain D, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) Homolog From Sulfolobus Tokodaii
Length = 245
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 14/246 (5%)
Query: 12 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMN 71
LK +++A+ +LV++A FD G L A+D +H++L+ + L E F+ Y G N
Sbjct: 11 LKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFN 70
Query: 72 LNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEA 131
+SK+LK A + I + AD S V + S +++ + +I+ +PE
Sbjct: 71 TQYMSKLLKAAKRKEEIIIDAD--SPEVVKLTLSGALNRV----FNVNNIEVLPPEVPEV 124
Query: 132 --EYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVD 189
E+ + ++ ++A + DT++IS +E V G+ + ++T
Sbjct: 125 NLEFDIKATINASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGE-NKVEVEFSKDTG-- 181
Query: 190 KPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRF 249
IE ++ S + + Y+N T LS+ V ++ + + P+ +E+ + G + +
Sbjct: 182 ---SLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTY 238
Query: 250 YLAPKI 255
LAPK+
Sbjct: 239 LLAPKL 244
>pdb|3LX1|A Chain A, Crystal Structure Analysis Of Pcna1 From Thermococcus
Kodakaraensis Tk0535
Length = 255
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 9/236 (3%)
Query: 22 LVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKC 81
L+++A F + G S++AMD S V L+ L L F Y + ++G+N++ K+LK
Sbjct: 23 LIDEAAFKFTEEGISMRAMDPSRVVLIDLNLPESIFSKYEVEEPETIGINMDQFKKILKR 82
Query: 82 AGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPS 141
D + L+ D + + FE + F + L+D++ L +PE + A V +
Sbjct: 83 GKAKDTLILRKGD-ENFLEITFEGTAK---RTFRLPLIDVEELELELPELPFTAKVVLLG 138
Query: 142 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHE 201
KD + + D + + KE +F+ + + T + +R + E +E+ E
Sbjct: 139 EVLKEGIKDASLVSDAIKF-IAKEN-EFTMKAEGETNEVEIRLTL---EDEGLLDLEVEE 193
Query: 202 PVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEE 257
+ +RY++ + ++ V + +E+P+ +EY I + G + F LAP++EE
Sbjct: 194 ETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLTFLLAPRVEE 249
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 11 LLKKVL-EAIKE--LVNDA-NFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNI 66
LL +VL E IK+ LV+DA F F+++A ++ + L L EG +
Sbjct: 136 LLGEVLKEGIKDASLVSDAIKFIAKENEFTMKAEGETNEVEIRLTLEDEGLLDLEVEEET 195
Query: 67 SMGMNLNNVSKMLKCAGNDDIITLK 91
+ +S M+K G D + L+
Sbjct: 196 KSAYGIRYLSDMVKGIGKADEVILR 220
>pdb|3L0X|B Chain B, Structure Of Split Yeast Pcna
Length = 94
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 165 EGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNT 224
E +KF GDIG+ +++++ ++ PE + +EM +PV LTF +Y+ + + LS+
Sbjct: 1 ETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDR 60
Query: 225 VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 259
V I LSSE P + ++ + + G+++F+LAPK ++E
Sbjct: 61 VGIRLSSEAPALFQFDL-KSGFLQFFLAPKFNDEE 94
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 165 EGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNT 224
E +KF GDIG+ +++++ ++ PE + +EM +PV LTF +Y+ + + LS+
Sbjct: 107 ETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDR 166
Query: 225 VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 259
V I LSSE P + ++ + + G+++F+LAPK ++E
Sbjct: 167 VGIRLSSEAPALFQFDL-KSGFLQFFLAPKFNDEE 200
>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position Two
pdb|3L10|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position One
Length = 169
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 100 TFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVV 159
T E + D I + + K+ D + GIP + I E R D ++ +
Sbjct: 12 TITLEVESSDTIDNVKSKIQDKE----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
Query: 160 ISVTK------EGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMN 213
V + E +KF GDIG+ +++++ ++ PE + +EM +PV LTF +Y+
Sbjct: 68 HLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLL 127
Query: 214 SFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKI 255
+ + LS+ V I LSSE P + ++ + + G+++F+LAPK
Sbjct: 128 DIIKGSSLSDRVGIRLSSEAPALFQFDL-KSGFLQFFLAPKF 168
>pdb|3AIX|A Chain A, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (I222)
pdb|3AIZ|C Chain C, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
pdb|3AIZ|D Chain D, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
Length = 246
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 114/266 (42%), Gaps = 31/266 (11%)
Query: 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYR 61
+ ++++ + ++E +++ D ++ G ++ +D S V + +L+ + FE Y
Sbjct: 1 MRVKVIDADAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYN 60
Query: 62 CDRNISMGMNLNNVSKMLKCAGNDDIITLKAD---------DGSDTVTFMFESPTQDKIA 112
++ +G+ L + + +LK +D + L+ D DG TF F S +I
Sbjct: 61 VEKEEKVGVKLEDFTDVLKTVTKNDSLYLETDENQNIKVTLDGVYERTFTFPSIVASEIE 120
Query: 113 DFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIG-DTVVISVTKEGVKFST 171
+ L E+ + + F I ++ IG D++ + S
Sbjct: 121 TPNLNL-------------EFPFKAKALTVTFTDIIDEIEDIGGDSITFKAEGGKLYLSA 167
Query: 172 RGDIGTANIVLRQNTTVDKPEEATIIEMHEP-VSLTFALRYMNSFTRATPLSNTVTISLS 230
D+G++ I L E ++E + L Y+ + ++ S+TV I+
Sbjct: 168 NSDMGSSTIELST-------ENGGLLESEGGDAESVYGLEYVVNTSKMRKPSDTVEIAFG 220
Query: 231 SELPVVVEYKIAEMGYIRFYLAPKIE 256
S++P+ + Y + + GY FY+AP+ E
Sbjct: 221 SQIPLKLRYNLPQGGYADFYIAPRAE 246
>pdb|3A2F|B Chain B, Crystal Structure Of Pyrococcus Furiosus Dna
PolymerasePCNA Monomer Mutant Complex
Length = 248
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 13/246 (5%)
Query: 14 KVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLN 73
++++ +L+++A F + G S +A D S V L+ L L S F Y ++G+NL+
Sbjct: 14 QLIDTASKLIDEAAFKVTEDGISXRAXDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLD 73
Query: 74 NVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEY 133
++ K+LK D + LK + + F+ + F + L+D++ + +PE +
Sbjct: 74 HLKKILKRGKAKDTLILKKGEEN----FLEITIQGTATRTFRVPLIDVEEXEVDLPELPF 129
Query: 134 HAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI--VLRQNTTVDKP 191
A V + K + + D++ + G+ I L +D
Sbjct: 130 TAKVVVLGEVLKAAVKAASLVSDSIKFIARENEFIXKAEGETQEVEIKLTLEDEGLLD-- 187
Query: 192 EEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYL 251
IE+ E + + Y++ + ++ VTI +E P EY I + G + F L
Sbjct: 188 -----IEVQEETKSAYGVSYLSDXVKGLGKADEVTIKFGNEXPXQXEYYIRDEGRLTFLL 242
Query: 252 APKIEE 257
AP++EE
Sbjct: 243 APRVEE 248
>pdb|3LX2|A Chain A, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
pdb|3LX2|B Chain B, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
pdb|3LX2|C Chain C, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
Length = 259
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 109/246 (44%), Gaps = 8/246 (3%)
Query: 12 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMN 71
+ ++ +++ ++A F + G ++A+D S V LV L L F Y + ++ +
Sbjct: 13 FESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAFD 72
Query: 72 LNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEA 131
L K+LK A + D + L+ G + F+ D+ F++ L+D ++ + IP
Sbjct: 73 LKRFLKVLKLARSRDTLVLR--KGGEN--FLEVGLLGDENTWFKLPLIDANTPEIEIPSL 128
Query: 132 EYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKP 191
+ + + R K + D++ T E + F G+ VL T++ P
Sbjct: 129 PWTVKAVVLAGALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSEVRTVL----TMEDP 184
Query: 192 EEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYL 251
+ + + Y+ R+ ++ V I ++P++++Y + + G + F +
Sbjct: 185 GLLDLEHKMTKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLI 244
Query: 252 APKIEE 257
AP++EE
Sbjct: 245 APRVEE 250
>pdb|2HII|C Chain C, Heterotrimeric Pcna Sliding Clamp
pdb|2HII|Z Chain Z, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|C Chain C, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|N Chain N, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|Z Chain Z, Heterotrimeric Pcna Sliding Clamp
Length = 252
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 112/247 (45%), Gaps = 10/247 (4%)
Query: 11 LLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGM 70
+LK +++A+ LV++A L A+D +H++L+++ L E F+ Y + G
Sbjct: 10 VLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREXFKEYDVNDEFKFGF 69
Query: 71 NLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPE 130
N + K+LK A + I + A + D+V T +F ++ +++ + +
Sbjct: 70 NTQYLXKILKVAKRKEAIEI-ASESPDSVIINIIGSTN---REFNVRNLEVSEQEIPEIN 125
Query: 131 AEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDK 190
++ + S F +++++ D VV+ ++ + G+ + ++T +
Sbjct: 126 LQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGE-SEVEVEFSKDTGGLQ 184
Query: 191 PEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFY 250
+E + +++ Y++ T LS+ V IS ++ P+ + + G + +
Sbjct: 185 D-----LEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNXEGGGKVTYL 239
Query: 251 LAPKIEE 257
LAPK+ E
Sbjct: 240 LAPKVLE 246
>pdb|2IJX|A Chain A, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|B Chain B, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|C Chain C, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|D Chain D, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2NTI|F Chain F, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|C Chain C, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|I Chain I, Crystal Structure Of Pcna123 Heterotrimer
Length = 244
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 112/245 (45%), Gaps = 10/245 (4%)
Query: 11 LLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGM 70
+LK +++A+ LV++A L A+D +H++L+++ L E F+ Y + G
Sbjct: 10 VLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGF 69
Query: 71 NLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPE 130
N + K+LK A + I + A + D+V T +F ++ +++ + +
Sbjct: 70 NTQYLMKILKVAKRKEAIEI-ASESPDSVIINIIGSTN---REFNVRNLEVSEQEIPEIN 125
Query: 131 AEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDK 190
++ + S F +++++ D VV+ ++ + G+ + ++T +
Sbjct: 126 LQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGE-SEVEVEFSKDTGGLQ 184
Query: 191 PEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFY 250
+E + +++ Y++ T LS+ V IS ++ P+ + + + G + +
Sbjct: 185 D-----LEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYL 239
Query: 251 LAPKI 255
LAPK+
Sbjct: 240 LAPKV 244
>pdb|2IX2|C Chain C, Crystal Structure Of The Heterotrimeric Pcna From
Sulfolobus Solfataricus
Length = 259
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 112/245 (45%), Gaps = 10/245 (4%)
Query: 11 LLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGM 70
+LK +++A+ LV++A L A+D +H++L+++ L E F+ Y + G
Sbjct: 25 VLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGF 84
Query: 71 NLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPE 130
N + K+LK A + I + A + D+V T +F ++ +++ + +
Sbjct: 85 NTQYLMKILKVAKRKEAIEI-ASESPDSVIINIIGSTN---REFNVRNLEVSEQEIPEIN 140
Query: 131 AEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDK 190
++ + S F +++++ D VV+ ++ + G+ + ++T +
Sbjct: 141 LQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGE-SEVEVEFSKDTGGLQ 199
Query: 191 PEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFY 250
+E + +++ Y++ T LS+ V IS ++ P+ + + + G + +
Sbjct: 200 D-----LEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYL 254
Query: 251 LAPKI 255
LAPK+
Sbjct: 255 LAPKV 259
>pdb|3AIX|B Chain B, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (I222)
pdb|3AIZ|A Chain A, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
pdb|3AIZ|B Chain B, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
Length = 248
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 13/247 (5%)
Query: 10 SLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMG 69
SLL +L+ E++ NF + FS D V +V + E E Y D+ + +
Sbjct: 14 SLLSGLLKVTDEII--LNFTEDSI-FSRYLTDD-KVLMVIFKIPKEYLEDYTIDKPLGIK 69
Query: 70 MNLNNVSKML-KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGI 128
+N+N++ K+L K +TL+ + VT E ++ +K + L
Sbjct: 70 ININDLKKILGKAKSKSATVTLEETEAGLKVTVRDEKTGTR--SNIYIKGEKTSIDQLTE 127
Query: 129 PEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTV 188
P+ I +DL+ +G+ V IS + V ST T +L+Q
Sbjct: 128 PKVNLSVTFTTDGDVLKDIARDLSLVGEEVEISADENTVTLSTEEAGRTYKSLLKQ---- 183
Query: 189 DKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIR 248
DKP ++ + + P +++ + + T +S VT+ + +P+ +E G +
Sbjct: 184 DKPLKS--LNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQLI 241
Query: 249 FYLAPKI 255
F++AP++
Sbjct: 242 FWIAPRL 248
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 27/100 (27%)
Query: 10 SLLKKVLEAIKELVNDANFD---------------------CSATGFSLQAMDSSHVALV 48
+L KV+E IKE + D+N CSA F+ A +
Sbjct: 116 KILDKVVERIKERMKDSNVKLLWGTANLFSHPRYMHGAATTCSADVFAYAAAQVKKALEI 175
Query: 49 ALLLRSEGF------EHYRCDRNISMGMNLNNVSKMLKCA 82
L EG+ E Y N +G L N+++ L+ A
Sbjct: 176 TKELGGEGYVFWGGREGYETLLNTDLGFELENLARFLRMA 215
>pdb|3LPX|A Chain A, Crystal Structure Of Gyra
pdb|3LPX|B Chain B, Crystal Structure Of Gyra
Length = 500
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 66 ISMGMNLNNVSKMLKCAGNDDII--TLKADDGSDTVTFMFESPTQDKIADFEM-KLMDID 122
IS G L NV+ ML AGND L+ + G + + I D ++ KL ++
Sbjct: 381 ISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGME 440
Query: 123 -----SEHLGIPE--AEYHAIVRMPSAEFARICKDLASIGD 156
SE+ + + AE I+ P+ IC++L +I D
Sbjct: 441 HDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRD 481
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,212,841
Number of Sequences: 62578
Number of extensions: 274722
Number of successful extensions: 855
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 64
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)