Query 024527
Match_columns 266
No_of_seqs 115 out of 777
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00057 proliferating cell nu 100.0 1.1E-61 2.4E-66 419.3 37.2 262 1-262 1-262 (263)
2 PTZ00113 proliferating cell nu 100.0 6.1E-61 1.3E-65 414.2 35.5 262 1-263 1-274 (275)
3 KOG1636 DNA polymerase delta p 100.0 4.4E-62 9.5E-67 394.2 24.9 259 1-259 1-259 (260)
4 TIGR00590 pcna proliferating c 100.0 1.9E-60 4E-65 411.1 36.4 259 1-259 1-259 (259)
5 PHA03383 PCNA-like protein; Pr 100.0 4.7E-59 1E-63 401.0 33.6 251 1-256 7-262 (262)
6 PTZ00483 proliferating cell nu 100.0 1.2E-57 2.5E-62 392.0 33.1 250 1-257 1-264 (264)
7 PRK01115 DNA polymerase slidin 100.0 1E-45 2.2E-50 318.4 34.1 246 1-256 1-247 (247)
8 cd00577 PCNA Proliferating Cel 100.0 3.6E-38 7.9E-43 270.8 33.1 246 5-256 2-248 (248)
9 PF00705 PCNA_N: Proliferating 100.0 1.5E-30 3.3E-35 200.8 16.9 124 1-124 1-126 (127)
10 PF02747 PCNA_C: Proliferating 100.0 3.7E-29 8.1E-34 194.0 18.3 127 128-254 2-128 (128)
11 PF02144 Rad1: Repair protein 100.0 1E-25 2.2E-30 196.4 30.0 231 1-241 1-275 (275)
12 PRK14942 DNA polymerase III su 99.9 2.4E-23 5.2E-28 189.0 26.3 215 8-253 138-370 (373)
13 PRK14944 DNA polymerase III su 99.9 9.8E-23 2.1E-27 185.1 24.4 216 8-254 134-373 (375)
14 PRK14940 DNA polymerase III su 99.9 3.2E-22 7E-27 181.5 25.7 218 8-256 131-367 (367)
15 PRK14947 DNA polymerase III su 99.9 8.5E-22 1.8E-26 179.4 26.8 225 8-259 131-377 (384)
16 PRK06673 DNA polymerase III su 99.9 6.2E-22 1.3E-26 180.1 24.8 212 9-253 138-372 (376)
17 PRK05643 DNA polymerase III su 99.9 4.5E-21 9.8E-26 174.1 26.9 214 9-253 133-364 (367)
18 PRK14941 DNA polymerase III su 99.9 8.7E-21 1.9E-25 172.5 26.4 221 8-256 134-373 (374)
19 PRK14945 DNA polymerase III su 99.9 1.6E-20 3.4E-25 170.3 26.0 212 8-253 128-359 (362)
20 PRK07761 DNA polymerase III su 99.9 3.5E-20 7.6E-25 168.8 27.4 222 8-255 128-374 (376)
21 PRK14946 DNA polymerase III su 99.9 2.3E-20 5E-25 168.9 23.8 214 8-253 131-363 (366)
22 PF04005 Hus1: Hus1-like prote 99.9 5.2E-19 1.1E-23 155.6 31.1 251 2-252 3-289 (292)
23 smart00480 POL3Bc DNA polymera 99.9 1E-19 2.3E-24 163.9 26.2 213 8-252 114-345 (345)
24 cd00140 beta_clamp Beta clamp 99.9 3E-19 6.6E-24 161.8 25.7 216 8-254 130-364 (365)
25 TIGR00663 dnan DNA polymerase 99.8 7.4E-19 1.6E-23 159.7 25.1 215 8-253 130-364 (367)
26 PRK14943 DNA polymerase III su 99.8 1.1E-18 2.4E-23 158.9 26.1 221 8-255 130-373 (374)
27 PF04139 Rad9: Rad9; InterPro 99.8 4.2E-18 9E-23 147.1 25.9 236 12-253 1-251 (252)
28 COG0592 DnaN DNA polymerase sl 99.8 2.4E-20 5.1E-25 168.8 7.1 251 4-265 63-333 (364)
29 KOG3194 Checkpoint 9-1-1 compl 99.8 6.4E-19 1.4E-23 145.9 13.5 242 2-253 14-270 (279)
30 COG0592 DnaN DNA polymerase sl 99.8 3.2E-16 6.8E-21 142.0 25.0 213 9-253 132-361 (364)
31 KOG3999 Checkpoint 9-1-1 compl 99.6 6.6E-13 1.4E-17 111.1 21.1 251 2-252 3-280 (284)
32 PF02768 DNA_pol3_beta_3: DNA 99.5 4.3E-13 9.4E-18 102.9 13.6 109 128-253 4-119 (121)
33 cd00140 beta_clamp Beta clamp 99.5 1.4E-11 3.1E-16 111.5 25.1 193 9-232 7-221 (365)
34 PF02767 DNA_pol3_beta_2: DNA 99.1 1.4E-09 3E-14 82.8 11.6 103 9-125 4-116 (116)
35 TIGR00663 dnan DNA polymerase 99.1 3.4E-08 7.4E-13 89.8 22.3 199 9-237 7-225 (367)
36 PRK14943 DNA polymerase III su 99.0 1.3E-07 2.8E-12 86.3 22.3 199 9-237 7-226 (374)
37 PRK05643 DNA polymerase III su 99.0 7.3E-07 1.6E-11 81.1 26.1 196 9-232 7-222 (367)
38 PRK14945 DNA polymerase III su 98.8 4.1E-06 8.8E-11 76.2 25.6 180 20-233 27-217 (362)
39 smart00480 POL3Bc DNA polymera 98.8 2.8E-06 6E-11 76.7 23.8 181 19-232 10-204 (345)
40 PRK14941 DNA polymerase III su 98.6 3.4E-05 7.3E-10 70.5 25.2 191 19-238 26-230 (374)
41 KOG2810 Checkpoint 9-1-1 compl 98.6 5.7E-08 1.2E-12 86.6 6.0 232 6-238 7-251 (394)
42 PRK07761 DNA polymerase III su 98.6 3.6E-05 7.7E-10 70.4 23.3 180 20-230 27-217 (376)
43 PRK14940 DNA polymerase III su 98.5 3E-05 6.4E-10 70.7 21.4 186 19-233 26-222 (367)
44 PRK01115 DNA polymerase slidin 98.5 8E-06 1.7E-10 70.2 15.6 108 8-117 137-244 (247)
45 PRK06673 DNA polymerase III su 98.4 0.00011 2.3E-09 67.3 21.2 186 20-232 27-226 (376)
46 PRK14944 DNA polymerase III su 98.4 0.00022 4.8E-09 65.1 22.7 186 20-233 27-226 (375)
47 PRK14942 DNA polymerase III su 98.3 0.0005 1.1E-08 62.8 22.9 190 20-233 27-229 (373)
48 PRK14947 DNA polymerase III su 98.3 0.00073 1.6E-08 61.9 24.0 186 20-233 27-224 (384)
49 PRK14946 DNA polymerase III su 98.2 0.00052 1.1E-08 62.5 20.9 181 22-233 28-219 (366)
50 PF00712 DNA_pol3_beta: DNA po 98.0 0.00013 2.9E-09 55.6 10.5 99 9-122 7-114 (120)
51 PF02747 PCNA_C: Proliferating 97.9 0.0018 3.9E-08 50.0 16.0 107 8-116 14-125 (128)
52 cd00577 PCNA Proliferating Cel 97.7 0.0021 4.6E-08 54.8 15.1 106 4-111 133-239 (248)
53 PF00705 PCNA_N: Proliferating 97.6 0.0087 1.9E-07 46.1 15.0 105 136-247 3-111 (127)
54 TIGR00590 pcna proliferating c 97.5 0.0091 2E-07 51.8 15.6 111 9-120 141-256 (259)
55 PLN00057 proliferating cell nu 97.3 0.016 3.4E-07 50.4 15.5 111 9-122 141-258 (263)
56 PTZ00113 proliferating cell nu 97.2 0.023 4.9E-07 49.7 15.1 114 9-123 143-271 (275)
57 PF04139 Rad9: Rad9; InterPro 97.1 0.0065 1.4E-07 52.4 10.8 109 8-117 136-250 (252)
58 PTZ00483 proliferating cell nu 97.0 0.032 6.9E-07 48.5 14.3 94 9-104 147-240 (264)
59 PF00712 DNA_pol3_beta: DNA po 96.8 0.12 2.7E-06 39.1 14.5 100 136-252 2-111 (120)
60 PHA03383 PCNA-like protein; Pr 96.8 0.1 2.2E-06 45.4 15.3 118 135-258 8-129 (262)
61 PF02768 DNA_pol3_beta_3: DNA 96.6 0.084 1.8E-06 40.0 12.0 89 8-103 15-107 (121)
62 PHA02545 45 sliding clamp; Pro 95.2 1.6 3.5E-05 36.7 15.9 120 34-172 26-152 (223)
63 PF02144 Rad1: Repair protein 95.2 0.26 5.7E-06 43.1 10.6 95 8-103 172-273 (275)
64 KOG1636 DNA polymerase delta p 95.1 0.87 1.9E-05 38.2 12.5 111 9-120 141-256 (260)
65 PF04005 Hus1: Hus1-like prote 77.8 41 0.00089 29.6 11.2 94 141-241 10-112 (292)
66 PF02767 DNA_pol3_beta_2: DNA 72.3 37 0.0008 25.1 12.6 89 138-238 1-99 (116)
67 KOG3194 Checkpoint 9-1-1 compl 62.9 80 0.0017 27.3 9.0 89 12-103 160-252 (279)
68 PF09116 gp45-slide_C: gp45 sl 54.6 90 0.0019 23.4 8.1 37 135-171 2-39 (112)
69 PF01776 Ribosomal_L22e: Ribos 47.7 99 0.0022 23.2 6.4 62 138-231 20-92 (112)
70 KOG3999 Checkpoint 9-1-1 compl 46.3 2E+02 0.0044 25.1 9.1 154 10-170 86-265 (284)
71 KOG2810 Checkpoint 9-1-1 compl 33.4 55 0.0012 30.1 3.7 35 140-174 9-43 (394)
72 PRK02770 S-adenosylmethionine 33.2 49 0.0011 25.8 3.0 60 6-65 33-99 (139)
73 PTZ00198 60S ribosomal protein 31.9 2.3E+02 0.005 21.5 6.6 28 204-231 74-105 (122)
74 PRK01236 S-adenosylmethionine 31.3 57 0.0012 25.1 3.1 72 6-81 21-99 (131)
75 PRK01706 S-adenosylmethionine 31.0 45 0.00097 25.4 2.4 61 6-66 22-89 (123)
76 PRK04025 S-adenosylmethionine 29.6 72 0.0016 24.9 3.4 75 6-80 20-101 (139)
77 TIGR03330 SAM_DCase_Bsu S-aden 29.3 66 0.0014 24.0 3.1 72 6-81 19-97 (112)
78 COG3110 Uncharacterized protei 26.1 82 0.0018 26.2 3.2 40 217-260 65-104 (216)
79 PRK03124 S-adenosylmethionine 26.1 77 0.0017 24.3 3.0 60 6-65 20-86 (127)
80 PF02282 Herpes_UL42: DNA poly 23.8 3.8E+02 0.0082 21.3 7.0 97 9-107 7-112 (156)
81 PHA03071 late transcription fa 23.5 4.3E+02 0.0093 21.9 9.1 145 14-167 73-239 (260)
82 PF06228 ChuX_HutX: Haem utili 20.4 3.6E+02 0.0079 21.0 5.8 39 136-175 21-59 (141)
No 1
>PLN00057 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=1.1e-61 Score=419.31 Aligned_cols=262 Identities=87% Similarity=1.284 Sum_probs=249.3
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+|+.||++++++++++++|+|+++++||+++|||++||||+++.|++++|++|+|+++.++||+++.|.|+||
T Consensus 1 Mf~a~~~~a~~~k~i~~ai~~lvde~~~~~t~~Gi~~~amD~s~Valv~l~l~~~~F~eY~~d~~~~~gv~l~~l~kiLk 80 (263)
T PLN00057 1 MLEARLVQGSLLKKVLEAIKDLVSDANFDCSETGLSLQAMDSSHVALVALLLRADGFEHYRCDRNLSMGINLANMSKILK 80 (263)
T ss_pred CeEEEEcchHHHHHHHHHHHHHhheeEEEEcCCeEEEEEEcCCcEEEEEEEeChhcCeEEecCCceEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
+++++|.+.|+++++++.|.|.+++.++++++.|.+++++++.+++++|+.+|+++++|+|+.|+++|++++.+||.|+|
T Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~f~l~l~d~~~e~l~iP~~e~~~~v~m~s~~f~~~~kdl~~vsd~v~i 160 (263)
T PLN00057 81 CAGNDDIITIKADDGGDTVTFMFESPKQDRISDFELKLMDIDSEHLGIPETEYSAIVRMPSAEFQRICKDLSSIGDTVVI 160 (263)
T ss_pred ccCCCCEEEEEecCCCCEEEEEEEcCCCceEEEEEEEeeecCcccCCCCCCceeEEEEEEHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999988889999999998888999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.++++++.|+++||.|++++.++.....+++++.+.+++++++++.|+++||++++|++++|++|+|+|++++||+|+|.
T Consensus 161 ~~~~~~~~f~~~Gd~g~~~~~l~~~~~~~~~~~~~~i~~~e~~~~~y~l~YL~~~~Ka~~ls~~V~i~~~~~~Pl~l~y~ 240 (263)
T PLN00057 161 SVTKEGVKFSTSGDIGTANIVLRQNTTVDKPEEKTVIEMQEPVSLTFALRYLNSFTKATPLSDTVTLSLSKELPVVVEYK 240 (263)
T ss_pred EEeCCEEEEEEEecCcEEEEEEecCCCCCCccceEEEEecCceEEEEhHHHHHHhhccccCCCeEEEEEcCCCCEEEEEE
Confidence 99999999999999999999997654444444556688899999999999999999999999999999999999999999
Q ss_pred eCCcEEEEEEEcccCCCCcccC
Q 024527 241 IAEMGYIRFYLAPKIEEDEDET 262 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~~~~~~~ 262 (266)
++++|+++||||||+++|++++
T Consensus 241 l~~~g~l~f~LAPri~~~~~~~ 262 (263)
T PLN00057 241 IAEMGYIRYYLAPKIEEDEDMD 262 (263)
T ss_pred eCCCeEEEEEEcCCCCCccccc
Confidence 9888999999999999998665
No 2
>PTZ00113 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=6.1e-61 Score=414.20 Aligned_cols=262 Identities=38% Similarity=0.765 Sum_probs=244.7
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+|+.||++++++++++++++|+++++||+++|||++||||+++.|++++|++|+|+++.++|||++.|.|+||
T Consensus 1 Mfea~~~~a~~~K~i~eal~~lv~e~~f~~t~~Gi~lqamD~shVaLv~l~l~~~~FeeY~cd~~~~lGvn~~~l~KILk 80 (275)
T PTZ00113 1 MLEAKLNNASVLRRLFECIKDLVSDGNIDFDETGLKLQALDGNHVALVHLKLHDSGFSHYRCDRERALGINIASVTKVFK 80 (275)
T ss_pred CeEEEeccHHHHHHHHHHHHHHhceEEEEECCCeEEEEEECCCcEEEEEEEeCHHhCeEEecCCCcEEEEEHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcc--eeeEEEEEehHHHHHHHHHhhccCCEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEA--EYHAIVRMPSAEFARICKDLASIGDTV 158 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~--~~~~~i~~~s~~~~~~i~~~~~~~d~v 158 (266)
+++++|.+.|+.+++.+.|.|.+++...+++++|.+++++++.+++.+|+. +|+++++|+|++|+++|++++.+||.|
T Consensus 81 ~~~~~D~l~l~~~~~~~~l~i~~~~~~~~~~~~f~l~L~di~~e~~~iPe~~~e~~~~v~m~s~~f~~i~rdl~~vgd~V 160 (275)
T PTZ00113 81 LCSNNDSVLIQSEEDKDNINFVFENNVEDKVSSFSLKLMSIEQDALSIPENEEGFDAEVTLSSKELTNICRQMNEFSDTV 160 (275)
T ss_pred hCCCCCEEEEEEcCCCCEEEEEEEcCCCceEEEEEEEccccCccccCCCCCCCCccEEEEEEHHHHHHHHHHHHHcCCEE
Confidence 999999999998888889999999998888999999999999988888876 899999999999999999999999999
Q ss_pred EEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEE
Q 024527 159 VISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVE 238 (266)
Q Consensus 159 ~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~ 238 (266)
+|.++++.+.|+++||.|++++.+++....+.++..+.+++.+++++.|+++||..|+|+.++|+.|+|+|++++||+++
T Consensus 161 ~i~~~~~~v~f~a~Gd~g~~~i~l~~~~~~~~~~~~~~~~v~~~~~~~ysl~YL~~f~Ka~~ls~~V~l~l~~d~Pl~le 240 (275)
T PTZ00113 161 KIEIDSNSIKFTTQGDLGDGEVVLKPRPPTSEDDCGVTIKVRKPIKQSYATKYLNMFAKSGCLSDVVTLGLSDNRPIEVK 240 (275)
T ss_pred EEEEeCCEEEEEEeccCcEEEEEEecCCCCCCccceEEEEecCceeeEEhHHHHHHhhccccCCCeEEEEEcCCCCEEEE
Confidence 99999999999999999999999976433233344556888999999999999999999999999999999999999999
Q ss_pred EEeCC----------cEEEEEEEcccCCCCcccCC
Q 024527 239 YKIAE----------MGYIRFYLAPKIEEDEDETK 263 (266)
Q Consensus 239 ~~i~~----------~g~~~~~iaPr~~~~~~~~~ 263 (266)
|++++ .|+++||||||+++|+ |++
T Consensus 241 y~i~~~~~~~~~~~~~G~l~fyLAPkie~~~-~~~ 274 (275)
T PTZ00113 241 YEIKDTSPDARHTHKLGEVKFFLAPKMDDDM-DTK 274 (275)
T ss_pred EEeccccccccccCCccEEEEEEcCccCccc-ccC
Confidence 99952 5999999999999888 443
No 3
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=100.00 E-value=4.4e-62 Score=394.23 Aligned_cols=259 Identities=74% Similarity=1.156 Sum_probs=253.9
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||||++.++..||+|+++++.++++++|+++++|+.+||||.+|||++++.|.++.|+.|+|++++++|++++.|.|+||
T Consensus 1 M~Earl~q~sLlKkIlealkdlV~~a~fdcse~GislQaMD~SHValvsl~l~s~~F~~yRCDRnl~lG~~L~slsKiLk 80 (260)
T KOG1636|consen 1 MLEARLVQASLLKKILEALKDLVNDANFDCSETGISLQAMDSSHVALVSLLLRSEGFEKYRCDRNLSLGMNLKSLSKILK 80 (260)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhccCcccccCceEEEEecccceEEEEEEeeccccceeccCCccccccCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
+++++|.++|..+++++.+.+.|++.+.+++..|.++|++.+.+.+.||+.+|++.++||+.+|+++|++++.+||.|.|
T Consensus 81 canned~~Tlkaed~~dti~l~fe~~~~dki~dy~lKLmdiD~ehl~IPe~dy~~~~~mPa~EF~ricrdls~f~Dsv~I 160 (260)
T KOG1636|consen 81 CANNEDTVTLKAEDNPDTITLMFESPKQDKIADYELKLMDIDSEHLGIPEQDYDAVVTMPAGEFSRICRDLSTFSDSVVI 160 (260)
T ss_pred cccCCCceEEEeecCCceEEEEEECCCCCcceeeEEEeeeccHHHcCCCcccceEEEEccHHHHHHHHHHHhhhcCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.+++..+.|+++||.|++++.+++..+.+++++.+.+++++|++.+|.+|||..|.|+.+|++.|+|+++++.|+.++|.
T Consensus 161 ~~tkegv~F~~~Gdig~asi~l~~~~~~d~~e~av~iE~~~pVtltfa~kYln~ftKatpLs~rV~lsls~~~P~~vey~ 240 (260)
T KOG1636|consen 161 SATKEGVKFSAKGDIGTASITLSQCTAVDKPEEAVKIEMNEPVTLTFALKYLNQFTKATPLSDRVTLSLSSEVPVVVEYK 240 (260)
T ss_pred EEecceeEEEecccccceeEEEccCCCCCCccceEEEEecCcchhhhHHHHHHHhhccccccceEEEEecCCCcEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcEEEEEEEcccCCCCc
Q 024527 241 IAEMGYIRFYLAPKIEEDE 259 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~~~~ 259 (266)
+.+.|+++||+||++++++
T Consensus 241 i~~~g~lr~YLAPKieD~e 259 (260)
T KOG1636|consen 241 IEDMGHLRYYLAPKIEDEE 259 (260)
T ss_pred cccCceEEEEEccccCCCC
Confidence 9999999999999999443
No 4
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.9e-60 Score=411.06 Aligned_cols=259 Identities=67% Similarity=1.109 Sum_probs=246.9
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+|+.||++++++++++++++|+++++||+++|||++||||+++.|++++|++|+|+++.++|||++.|.|+||
T Consensus 1 Mfea~~~~a~~~k~i~eai~~lv~e~~~~~t~~Gi~~~amD~s~Valv~l~l~~~~F~~Y~~d~~~~~gv~l~~l~kiLk 80 (259)
T TIGR00590 1 MFEARLEQASLLKKILEAIKDLVNDANFDCSESGISLQAMDSSHVSLVSLTLRSEGFDTYRCDRNLALGVNLTSLSKILK 80 (259)
T ss_pred CeEEEEccHHHHHHHHHHHHHHhceeeEEECCCeEEEEEEcCCcEEEEEEEcCHHhCceEecCCceEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
+++++|.+.|+++++++.|.|.+++.+.++.+.|.+++++++.+++++|+.+|+++++|+|+.|+++|++++.+||.|+|
T Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~f~l~l~d~~~e~l~iP~~e~~~~v~m~s~~f~~~~kdl~~v~d~v~i 160 (259)
T TIGR00590 81 CANNEDIVTLKAEDNADTLILVFESPKQDKISDYELKLMDIDVEHLGIPEQEYDCVVEMPSSEFARICRDLSQFSDSVVI 160 (259)
T ss_pred ccCCCCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEEeeecccccCCCCCCceeEEEEEEHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999988888999999988778899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.++++++.|+++||.|++++.++......++.+.+.++++++++++|+++||+.++|++++|++|+|+|++++||+|+|.
T Consensus 161 ~~~~~~~~f~~~Gd~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~y~l~YL~~~~Ka~~ls~~V~l~~~~~~Pl~l~y~ 240 (259)
T TIGR00590 161 SCTKEGVKFSAKGDIGSGNVKLKQTSDTDKEEEAVTIEMKEPVTLTFAIKYLNLFTKATPLSDRVTLSMSNDVPLVVEYK 240 (259)
T ss_pred EEeCCEEEEEEEecccEEEEEEecCCCCCCCcceEEEEecCceeeeeeHHHHHHhhhhccCCCeEEEEEcCCCCEEEEEE
Confidence 99999999999999999999997654444555556688899999999999999999999999999999999999999999
Q ss_pred eCCcEEEEEEEcccCCCCc
Q 024527 241 IAEMGYIRFYLAPKIEEDE 259 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~~~~ 259 (266)
++++|+++||||||+++|+
T Consensus 241 i~~~g~l~f~lAPrie~~~ 259 (259)
T TIGR00590 241 IKDMGFLRFFLAPKIEDEE 259 (259)
T ss_pred eCCCeEEEEEEcCccCCCC
Confidence 9888999999999999874
No 5
>PHA03383 PCNA-like protein; Provisional
Probab=100.00 E-value=4.7e-59 Score=400.95 Aligned_cols=251 Identities=28% Similarity=0.613 Sum_probs=235.7
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+|+.||++++++++++++++|+++++||+++|||++||||+++.|++++|++|+|+++.++|+|++.|.|+||
T Consensus 7 mfe~~~~~a~~~K~iieai~~lv~e~~f~~t~~Gi~lqamD~shVaLv~l~L~~~~F~~Y~~d~~~~iGv~~~~l~KILk 86 (262)
T PHA03383 7 LFHIRTIQGSVIKSLFDVLKEILHDVNIFFRPTGVYISALDGAKVSLVHMKLDAESFEEYHCDQTYEIGVNVSNMFKLLR 86 (262)
T ss_pred EEEEEecchHHHHHHHHHHHHHhceEEEEECCCcEEEEEECCCcEEEEEEEeCHHhCceEecCCceEEEEEHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEE-cCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEE
Q 024527 81 CAGNDDIITLKA-DDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVV 159 (266)
Q Consensus 81 ~~~~~d~l~l~~-~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~ 159 (266)
+++++|.+.|++ +++++.|.|.+++.+.+++++|.+++++++.+++++|+.+|+++++|+|++|+++|++++.+||.|+
T Consensus 87 ~a~~~D~l~l~~~~~~~~~l~i~~~~~~~~~~~~f~l~Lidi~~e~l~iP~~e~~~~v~m~s~~f~~i~kdl~~igD~v~ 166 (262)
T PHA03383 87 TAGSHDSILFRYLKNSPHFLEITIQNFEKNSLTKFQLKLIEIDSSRIEVPDVEFDTIIILPSNYFQRLCRDMSNITDDLE 166 (262)
T ss_pred ccCCCCEEEEEecCCCCCEEEEEEEeCCCCcEEEEEEEccccCcccCCCCCCCccEEEEEEHHHHHHHHHHHHHcCCeEE
Confidence 999999999986 6777799999999888889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEE----EEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcE
Q 024527 160 ISVTKEGVKFS----TRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPV 235 (266)
Q Consensus 160 i~~~~~~l~~s----~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl 235 (266)
|.++++.+.|+ ++||.|.+++.++.. .+..+.+..+++++.+|+++||.+|+|+.++|++|+|+|++++||
T Consensus 167 i~~~~~~v~f~~~~~~~Gd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~ysl~YL~~~~Ka~~ls~~V~i~l~~d~Pl 241 (262)
T PHA03383 167 ITKKGKEVSFRSDYTCVTDFASQETIIGDS-----DNGQITCNESPDYTGKFSLKYLTSFTKASGMSSSVEIYLKESNPL 241 (262)
T ss_pred EEEeCCEEEEEEcccccccccceEEEecCC-----CCCceEEecCCceEEEEeHHHHHHhhccccCCCeEEEEEcCCCCE
Confidence 99999999999 999999999998532 233343333678999999999999999999999999999999999
Q ss_pred EEEEEeCCcEEEEEEEcccCC
Q 024527 236 VVEYKIAEMGYIRFYLAPKIE 256 (266)
Q Consensus 236 ~l~~~i~~~g~~~~~iaPr~~ 256 (266)
+++|.++++|++.||||||+.
T Consensus 242 ~ley~i~~~G~l~fyLAPri~ 262 (262)
T PHA03383 242 ILKYNVGSLGNLKFVIAPKVS 262 (262)
T ss_pred EEEEEeCCCcEEEEEEccccC
Confidence 999999888999999999974
No 6
>PTZ00483 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=1.2e-57 Score=392.02 Aligned_cols=250 Identities=34% Similarity=0.604 Sum_probs=228.9
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++. |+.||+++++++.++++++|+++++||+++|||++||||+++.|++++|++|+|+++.++|||+..|.|+||
T Consensus 1 Mfea~~~-a~~lK~i~eai~~lv~e~~f~~~e~Gi~lqAmD~shVaLV~l~L~~~~Fe~Y~cd~~~~lGinl~~l~KiLk 79 (264)
T PTZ00483 1 MFECRLD-GMFLRRLFETLKDICTDVSIDCSENGLKMQAMDNSHISLIHLNLAPDFFQLYRCDKPCVLGLNISFMLKILS 79 (264)
T ss_pred CeEEEEe-HHHHHHHHHHHHHHhheeEEEECCCcEEEEEECCCcEEEEEEEcCHHhCeEEecCCCeEEEEEHHHHHHHHh
Confidence 9999996 999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred ccCCCceEEEE-EcCC-CCeEEEEEeCCCCC-----eEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhc
Q 024527 81 CAGNDDIITLK-ADDG-SDTVTFMFESPTQD-----KIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLAS 153 (266)
Q Consensus 81 ~~~~~d~l~l~-~~~~-~~~l~i~~~~~~~~-----~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~ 153 (266)
+++++|.+.|+ .++. ...+.|++.+...+ +++.|.++|++++.+++++|+.+|+++++|+|++|+++|++++.
T Consensus 80 ~a~~~D~l~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~f~l~Lidi~~e~l~iP~~e~~~~v~m~s~~f~~i~kdl~~ 159 (264)
T PTZ00483 80 VVKEKSTIYLFRGDNTEDPVLNIRIIEEEGQNSLESDSLEAQVKLINVQREHLEIPQCEYHCKCVMNSKKFQEFAKYLHS 159 (264)
T ss_pred hcCCCCEEEEEeccCCCCceEEEEEeccccccccccceEEEEEEccccCcccCCCCCCCccEEEEEEHHHHHHHHHHHHH
Confidence 99999999997 4333 33566655444322 67799999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCC
Q 024527 154 IGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSEL 233 (266)
Q Consensus 154 ~~d~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~ 233 (266)
+||.|+|.++++++.|+++||.|+++..++ ++...+.++++++++.+|+++||.+|+|+.++|++|+|+|++++
T Consensus 160 vsD~v~i~~~~~~v~f~a~Gd~~~~~~~l~------~~~~~v~~~~~~~v~~~fsl~YL~~f~Ka~~lsd~V~i~l~~~~ 233 (264)
T PTZ00483 160 IGDTVSISMKKDEMRLETEGEGIKASKQFH------NDVGDVRVTSTESLSQEFATRYLVLFSKATSLADEVSINLSAGI 233 (264)
T ss_pred cCCEEEEEEECCEEEEEEeecCcEEEEEEc------cCCCceEEEecCcchheehHHHHHHhhccccCCCeEEEEEcCCC
Confidence 999999999999999999999999999984 22334667789999999999999999999999999999999999
Q ss_pred cEEEEEEeC-------CcEEEEEEEcccCCC
Q 024527 234 PVVVEYKIA-------EMGYIRFYLAPKIEE 257 (266)
Q Consensus 234 Pl~l~~~i~-------~~g~~~~~iaPr~~~ 257 (266)
||+++|.++ ++|+++||||||+++
T Consensus 234 Pl~ley~i~~~~~~~~~~G~l~fyLAPrie~ 264 (264)
T PTZ00483 234 PLSVKFNFKDPLTDLQDSSFINFYLAPNIEE 264 (264)
T ss_pred CEEEEEEecccccCCCCceEEEEEEccccCC
Confidence 999999994 579999999999975
No 7
>PRK01115 DNA polymerase sliding clamp; Validated
Probab=100.00 E-value=1e-45 Score=318.38 Aligned_cols=246 Identities=27% Similarity=0.512 Sum_probs=226.3
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+++.||+++++++.+++++.|+++++||+++|+|++|+|++.+.++++.|++|+|..+..++++++.|.++||
T Consensus 1 ~~~~~~~~~~~lk~i~~~i~~l~~~v~~~~~~~~l~~~atD~~Rla~~~~~~~~~~f~~~~~~~~~~~~v~l~~l~~il~ 80 (247)
T PRK01115 1 MMKAVYPDAKDFKYIIDAISKLVDEAKFKFTEDGIRLRALDPAKVAMVDLELPKEAFEEYEVDEEEKIGVDLEDLKKILK 80 (247)
T ss_pred CeEEEecchHHHHHHHHHHHHHhceEEEEECCCcEEEEEECCccEEEEEEEeCHHhCccEecCCCeEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
++++++.+.|.++++.+++.|.+++ ++.+.|.++|+++++|+..+|+.+|+++++|++++|+++++|++.+++.|+|
T Consensus 81 ~~~~~~~v~i~~~~~~~~l~~~~~~---~~~~~~~~~Lieg~~p~~~v~p~~~~~~i~~~~~~l~~~~~r~~~~~~~v~i 157 (247)
T PRK01115 81 RAKKGDKLELELDEEENKLKITFGG---EKTREFSLPLLDVSSEEPPEPNLELPVKAVILGDDLKDAIKDAELVSDHIEL 157 (247)
T ss_pred hCCCCCEEEEEEcCCCCEEEEEEec---CcEEEEEEEeeccCCCCCCCCCCcccEEEEEEHHHHHHHHHHHHhcCCeEEE
Confidence 9988889999997666799999987 4567999999999999887777899999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCce-EEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT-IIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEY 239 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~ 239 (266)
.++++.++|++.|+ |++.+++.. .++.. .+++.++++++||.+||.+++|+++.+++|.|+|+++.|+.+++
T Consensus 158 ~~~~~~l~lsa~~~-g~a~~~i~~------~~~~~~~~~g~e~~~i~fn~~YL~d~lk~~~~~~~V~l~~~~~~P~~l~~ 230 (247)
T PRK01115 158 EADEDKFYIEAEGE-GEDEVELSL------DSGPLIELSVEEPAKSSYSLDYLKDMVKATSASDEVTIEFGSDMPLKLEF 230 (247)
T ss_pred EEeCCEEEEEEEeC-CceEEEEec------CCCceEEEEecCceeEEEhHHHHHHhhccccCCCeEEEEECCCCCEEEEE
Confidence 99999999999999 999998842 12222 24545789999999999999999997799999999999999999
Q ss_pred EeCCcEEEEEEEcccCC
Q 024527 240 KIAEMGYIRFYLAPKIE 256 (266)
Q Consensus 240 ~i~~~g~~~~~iaPr~~ 256 (266)
.++++|++.||||||++
T Consensus 231 ~~~~~~~~~~~i~P~~~ 247 (247)
T PRK01115 231 EIAGGGKVTYLLAPRIE 247 (247)
T ss_pred EeCCCeEEEEEEecccC
Confidence 88888999999999985
No 8
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY].
Probab=100.00 E-value=3.6e-38 Score=270.81 Aligned_cols=246 Identities=52% Similarity=0.867 Sum_probs=221.1
Q ss_pred EEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCC
Q 024527 5 RLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGN 84 (266)
Q Consensus 5 ~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~ 84 (266)
++.+++.|++++++++++.+++.|+++++||+++++|++|++++++.++++.|++|+|+.+..++|+++.|.+++|.++.
T Consensus 2 ~~~~~~~l~~~~~~l~~i~~~v~~~~~~~gl~~~a~d~~r~~~~~~~l~~~~F~~y~~~~~~~~~i~~k~l~~~lk~~~~ 81 (248)
T cd00577 2 TLSNAKLLKKIVDALSKLVDEANFDITEDGISLQAMDSSHVALVSLFLPKELFEEYRCDEEISLGVNLKSLLKILKCAGN 81 (248)
T ss_pred cccchHHHHHHHHHHHHHhcEEeEEECCCceEEEEEcCCcEEEEEEEechhhCeEEecCCceEEEEEHHHHHHHHhhCCC
Confidence 56789999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEEEEeC
Q 024527 85 DDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTK 164 (266)
Q Consensus 85 ~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i~~~~ 164 (266)
.+.+.+.++++ +++.|.+++...+..+.|.+++++++++++..|..+++++++|+++.|++++++++.+++.|+|.+++
T Consensus 82 ~~~v~i~~~~~-~~l~i~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~i~i~~~~L~~~i~~~~~~~~~i~i~~~~ 160 (248)
T cd00577 82 EDCVTLRADDE-DPLKILFESSKGDVTSEFSLKLMDIDSEQLPIPELEYDATVTLPSDELKDIVRDLESISDSVTISASK 160 (248)
T ss_pred CCEEEEEecCC-CeEEEEEEcCCCceEEEEEEEccccCcccCCCCCCceeEEEEEEHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 88999999766 68989888765566789999999999998866667999999999999999999999999999999999
Q ss_pred CeEEEEEEecceeEEEEEeecccCCCCCCc-eEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEEeCC
Q 024527 165 EGVKFSTRGDIGTANIVLRQNTTVDKPEEA-TIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAE 243 (266)
Q Consensus 165 ~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i~~ 243 (266)
+.+.|++.|+.|.+....... .... ..+.+++++++.|+.+||.+++|+++++++|.|+++.++|+.+++.+++
T Consensus 161 ~~l~lss~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~fn~~yL~~~l~~~~~s~~v~i~~~~~~p~~i~~~~~~ 235 (248)
T cd00577 161 DGFKFSAEGELGGASVTLLPK-----DSDLLVTIECSEPVSSTYSLKYLKDFTKAAPLSDKVTLSFGSDGPLSLEFKIAD 235 (248)
T ss_pred CEEEEEEeecCCceEEEEecC-----CCCceEEEEeCCceEEEEhHHHHHHHhhhcccCCeEEEEEcCCCCEEEEEEcCC
Confidence 999999999867665555321 1111 2245689999999999999999999889999999999999999999987
Q ss_pred cEEEEEEEcccCC
Q 024527 244 MGYIRFYLAPKIE 256 (266)
Q Consensus 244 ~g~~~~~iaPr~~ 256 (266)
.|.++|||||+++
T Consensus 236 ~~~~~f~lap~~~ 248 (248)
T cd00577 236 GGHLTFYLAPKIE 248 (248)
T ss_pred CcEEEEEEccccC
Confidence 8999999999874
No 9
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1U76_E 2ZVK_B 1VYJ_A 1UL1_B 3P87_D 2ZVM_C 2ZVL_A 1AXC_C 3VKX_A 3TBL_B ....
Probab=99.97 E-value=1.5e-30 Score=200.80 Aligned_cols=124 Identities=47% Similarity=0.816 Sum_probs=115.9
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+|..||+++++++.++++++|+++++||+++|||++|+||+++.+|+++|++|+|+++.++|||++.|.++||
T Consensus 1 Mfea~~~~a~~~K~i~eal~~lv~e~~f~~~~~Gi~~~amD~s~Valv~l~l~~~~F~~Y~~d~~~~igvnl~~l~kiLk 80 (127)
T PF00705_consen 1 MFEAKFSDASLFKKIFEALKDLVDEANFEFTEDGISLQAMDPSHVALVDLELPSEAFEEYRCDKELSIGVNLSDLKKILK 80 (127)
T ss_dssp SEEEEESSHHHHHHHHHHHTTTCSEEEEEEESSEEEEEEE-TTSSEEEEEEEEGGGSSEEEESSSEEEEEEHHHHHHHHT
T ss_pred CeEEEEcchHHHHHHHHHHHHHhhEEEEEEccCCEEEEEECCCcEEEEEEEechhcceEEEcCCCEEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEE--EEEEeeeecCCC
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIA--DFEMKLMDIDSE 124 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~--~~~l~li~~~~~ 124 (266)
+++++|.+.|+++++++.+.+.+++.++++.+ .|.++++|.+.+
T Consensus 81 ~~~~~D~l~l~~~~~~~~l~i~~~~~~~~~~~~~~~~l~~id~d~e 126 (127)
T PF00705_consen 81 RAKKDDSLELESDEEPDKLNIVFENEKKGRVREFSLKLMLIDIDSE 126 (127)
T ss_dssp TSSTTSEEEEEEESSSSEEEEEEEETTSSEEEEEEEEEEEBEEEEE
T ss_pred hccCCCEEEEEEeCCCCEEEEEEEcCCCCeEEeeeeEEEEeccccC
Confidence 99999999999998888999999999988888 556666666543
No 10
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=99.97 E-value=3.7e-29 Score=194.03 Aligned_cols=127 Identities=49% Similarity=0.895 Sum_probs=113.8
Q ss_pred CCcceeeEEEEEehHHHHHHHHHhhccCCEEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEE
Q 024527 128 IPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTF 207 (266)
Q Consensus 128 ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 207 (266)
+|+.+|+++++|+|++|+++|++++.+||.|+|.++++++.|+++||.|++++.++.....+++++.+.+++.++++..|
T Consensus 2 iP~~e~~~~v~m~S~~f~~~~kdl~~v~d~v~i~~~~~~~~f~~~Gd~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~f 81 (128)
T PF02747_consen 2 IPDLEYDATVTMPSSEFKKICKDLSSVGDTVTISADKDSVIFSAEGDIGSAEVEFKETESSEDDEELIEIEVKEPVSSSF 81 (128)
T ss_dssp ---SS-SEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEESSEEEEEEEEEEEEETTCTCESEEEESSEEEEEE
T ss_pred CCCccceEEEEEEHHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEeccCcEEEEEeeccccccccccceeeeccceeeEE
Confidence 79999999999999999999999999999999999999999999999999999887654444555566788999999999
Q ss_pred ehHHHHhccccCCCCceEEEEecCCCcEEEEEEeCCcEEEEEEEccc
Q 024527 208 ALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPK 254 (266)
Q Consensus 208 ~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i~~~g~~~~~iaPr 254 (266)
+++||..|+|+++++++|+|+|++++||+|+|.++++|++.|||||+
T Consensus 82 sl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~f~~~~~g~l~f~LAPK 128 (128)
T PF02747_consen 82 SLDYLNDFSKAAPLSDEVTLELGEDMPLKLEFELADGGSLKFYLAPK 128 (128)
T ss_dssp EHHHHHHHGGGGGTTSEEEEEEETTSEEEEEEEETTTEEEEEEE-BB
T ss_pred eHHHHHhhhccccCCceEEEEEcCCCCEEEEEEeCCCeEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999996
No 11
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus. REC1 mutants are very sensitive to UV light. Mutation leads to a complex phenotype with alterations in DNA repair, recombination, mutagenesis, meiosis and cell division []. The predicted product of the REC1 gene is a polypeptide of 522 amino acid residues with molecular mass 57kDa. The protein shows 3'--5' exonuclease activity, but only in cells over-expressing REC1 []. While it is distinguishable from the major bacterial nucleases, the protein has certain enzymatic features in common with epsilon, the proof-reading exonuclease subunit of Escherichia coli DNA polymerase III holoenzyme []. The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes a 37kDa protein that exhibits partial similarity to the REC1 gene of U. maydis []. The two genes share putative functional similarities in their respective organisms.; GO: 0003684 damaged DNA binding, 0008853 exodeoxyribonuclease III activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3G65_B 3GGR_C 3A1J_C.
Probab=99.96 E-value=1e-25 Score=196.39 Aligned_cols=231 Identities=16% Similarity=0.292 Sum_probs=189.2
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeee-------------CCcEE
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRC-------------DRNIS 67 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~-------------~~~~~ 67 (266)
+|.|++.+++.|.+++++|. +.+.+.+.++++||++.+ +.+|+.++.+.|+++.|++|.+ +....
T Consensus 1 ~f~A~~~~~~~l~~lL~~I~-~~~~a~v~is~~Gi~~~v-E~~~~~qa~a~l~k~LF~~Y~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PF02144_consen 1 IFSASTSNVRHLYQLLKCIA-FKNKATVEISEDGIKFTV-EDSKSIQASAFLDKSLFSEYTFNPPPDADDDDEEEEDEVS 78 (275)
T ss_dssp -EEEEES-THHHHHHHHTT--SSSEEEEEEETTEEEEEE-EETTTEEEEEEEEGGGSSEEEE------------SSS-EE
T ss_pred CeEEEECCHHHHHHHHHhcc-cCCeEEEEEcCCEEEEEE-ECCcEEEEEEEEChhhceEEEEeccccccccccCCCCceE
Confidence 69999999999999999999 667899999999999987 5799999999999999999999 23689
Q ss_pred EEEEhhhHHHHhcccCCCc----------------------eEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCC-
Q 024527 68 MGMNLNNVSKMLKCAGNDD----------------------IITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSE- 124 (266)
Q Consensus 68 ~gi~l~~L~~ilk~~~~~d----------------------~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~- 124 (266)
|+|+++.|.+||..++.++ .+.|.|.+.+.+|.+.++.. |.++++.+++++++.+
T Consensus 79 F~I~L~~LlecL~ifg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsY~g~G~pL~l~led~--gv~t~c~i~T~~~~~~~ 156 (275)
T PF02144_consen 79 FGINLSALLECLNIFGSSDSSSSSSSSGGDPSRNNASGEPTSCRLSYPGEGSPLVLILEDS--GVTTTCEIRTYEPDDPL 156 (275)
T ss_dssp EEEEHHHHHHHHTTT-SS--TT-----------------EEEEEEEESSSCCEEEEEEEET--TEEEEEEEEEE------
T ss_pred EEEEhHHHHHHHHHhCCCCCccccccccccccccccccCCceEEEEEcCCCCeEEEEEEeC--CEEEEEEEEEecCCccc
Confidence 9999999999999987422 58999999999999999984 8899999999998864
Q ss_pred CCCCCcceeeEEEEEehHHHHHHHHHhhcc-CCEEEEEEeC---CeEEEEEEecceeEEEEEeecccCCCCCCceE-EEe
Q 024527 125 HLGIPEAEYHAIVRMPSAEFARICKDLASI-GDTVVISVTK---EGVKFSTRGDIGTANIVLRQNTTVDKPEEATI-IEM 199 (266)
Q Consensus 125 ~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~d~v~i~~~~---~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~-~~~ 199 (266)
++++......+++.|.|+.|++++++++.. ++.+.|.+++ +.+.|+++|..|.+++.++ +..+-++ ++|
T Consensus 157 d~~f~~~~~~~kiimks~~L~~al~eL~~~~~~~l~i~~s~~~~p~f~l~s~G~~G~s~v~fp------~~~~~le~f~~ 230 (275)
T PF02144_consen 157 DFPFDRSDVVNKIIMKSDWLRDALSELDWSNSEELTIYISPPDKPHFRLSSKGPLGSSKVDFP------NDSDVLETFEC 230 (275)
T ss_dssp -----TTTEEEEEEEEHHHHHHHHHTT-TS-CSEEEEEE-S-SSSSEEEEEEETTEEEEEEE-------TTSTSEEEEEE
T ss_pred CcccccccceeEEEEEhHHHHHHHHHHhhccCCeEEEEEEeCCCCEEEEEEEcCCCeEEEEEC------CCCCceeEEEE
Confidence 566654567899999999999999999999 8899999987 6999999999999999995 2233343 788
Q ss_pred c---CcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEEe
Q 024527 200 H---EPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI 241 (266)
Q Consensus 200 ~---~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i 241 (266)
. +.....|...+|+.+.||+++|.+|.|+++.++-|.+|+.+
T Consensus 231 ~~~~~~~~~~Y~f~~i~~~~kAl~~ssKv~ir~d~~GlLs~Q~mi 275 (275)
T PF02144_consen 231 YDGEEPVISRYKFSLIKKAMKALKISSKVSIRIDENGLLSLQFMI 275 (275)
T ss_dssp ----S-EEEEEEHHHHCCHHHHHTTSSEEEEEEESSS-EEEEEEE
T ss_pred eccCceEEEEEeHHHHHHHHHHhhhccEEEEEeCCCcEEEEEEeC
Confidence 7 56777799999999999999999999999999999999854
No 12
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=99.93 E-value=2.4e-23 Score=188.98 Aligned_cols=215 Identities=16% Similarity=0.202 Sum_probs=181.9
Q ss_pred ChhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++. .+++++|+.|++.+++++++|+|++|+|+....++... ..+..+.||.+.|.++
T Consensus 138 ~~~~L~~~i~~t~fa~s~de~R~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~------~~~~~~iIP~k~l~el 211 (373)
T PRK14942 138 PSQLINDMIRKTSYAIAHEDQRFIFNGLYMIPDGTKLIFVGTDGRRLCKIERTLPSPL------QFKDSIIVPAKAVREI 211 (373)
T ss_pred CHHHHHHHHhhEeEEEeccccchhheeEEEEEeCCEEEEEEechHHeEEEecccCCCC------CCCceEEEehHHHHHH
Confidence 36788888887 55889999999999999999999999999887776421 1135689999999999
Q ss_pred hcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccCC
Q 024527 79 LKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIGD 156 (266)
Q Consensus 79 lk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d 156 (266)
+|.+..++.+++.++++ ++.|.+++. .+.++|+++.+|+| .+|+ +++.++++++++|.++++|++.+++
T Consensus 212 ~kll~~~~~v~i~~~~~--~i~f~~~~~------~~~srLieG~yPdy~~vIP~-~~~~~~~v~r~~l~~al~Rv~~~~~ 282 (373)
T PRK14942 212 SKMIATSETGNIGLIDE--QIYVSANNI------ELLCKLIEGNFPNYEQVIPK-QTKFSVRISKEEFQVSLRQVLTAAE 282 (373)
T ss_pred HHhcCCCCcEEEEEcCC--EEEEEECCE------EEEEEecccCCCChhhhCCC-CCCeEEEEeHHHHHHHHHHHHHHhh
Confidence 99987666788888755 788888765 89999999999998 7885 8999999999999999999999863
Q ss_pred ----EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEec
Q 024527 157 ----TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISLS 230 (266)
Q Consensus 157 ----~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~ 230 (266)
.|.+..+++.+++++.+ +.|.+.+++ .++. |++.++.||.+||.+++++++ +++|.++|+
T Consensus 283 ~~~~~v~l~~~~~~l~isa~~~~~g~~~e~i-------------~~~~~G~~~~I~fN~~ylld~L~~i~-~~~v~l~~~ 348 (373)
T PRK14942 283 EPSRQVRLTFSKNNLNLFAQTLGASEADINM-------------PIEYSGEEITIAFKGEYLMDIFRSID-DNEVKIEFS 348 (373)
T ss_pred cCCceEEEEEeCCEEEEEEeCCCcceEEEEE-------------EEEecCCcEEEEECHHHHHHHHhcCC-CCeEEEEEC
Confidence 58888899999999875 778887776 2445 678999999999999999998 899999999
Q ss_pred CC-CcEEEEEEeCCcEEEEEEEcc
Q 024527 231 SE-LPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 231 ~~-~Pl~l~~~i~~~g~~~~~iaP 253 (266)
+. .|+.++. . ++..+.|+|+|
T Consensus 349 ~~~~P~~i~~-~-~~~~~~~liMP 370 (373)
T PRK14942 349 DSSSPVIFKD-P-SDPEFISVIMP 370 (373)
T ss_pred CCCCCEEEEe-C-CCCceEEEEee
Confidence 87 5999985 3 34567799999
No 13
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=99.92 E-value=9.8e-23 Score=185.12 Aligned_cols=216 Identities=11% Similarity=0.206 Sum_probs=180.0
Q ss_pred ChhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++. .+++++|+.|++.+++++++|+|+||+|+....++.+. .+..+.||.+.|.++
T Consensus 134 ~~~~l~~~i~~t~fa~s~de~r~~L~Gv~~~~~~~~l~~vATDghRLa~~~~~~~~~~-------~~~~~iIP~k~l~el 206 (375)
T PRK14944 134 KTHFFKKIIKEINISTSKNEKRPILTGLNLIYQKNLLKALATDSFRMSQKKIKLDFNY-------HNFNIVIPNKSLEEL 206 (375)
T ss_pred CHHHHHHHHhheeEEEccccCccceeEEEEEEECCEEEEEEEccceeEEEEeccCCCC-------CceEEEEECchHHHH
Confidence 36678888877 46789999999999999999999999999888776432 135689999999999
Q ss_pred hcccC--CCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhcc
Q 024527 79 LKCAG--NDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASI 154 (266)
Q Consensus 79 lk~~~--~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~ 154 (266)
+|.+. .++.+++.++++ ++.|.+++. .+..+|+|+.+|+| .+|+ +|+.+++++.++|.++++|++.+
T Consensus 207 ~kll~~~~~~~v~i~~~~~--~i~f~~~~~------~~~srLieG~fPdy~~viP~-~~~~~~~i~r~~l~~al~Rvsll 277 (375)
T PRK14944 207 SKILEYYQSKNLKIYSDSK--KIFLKIDNL------WFQTSLLEGNYPQIQEIKLT-NFPFSIHLNKDDLMKALERVSLL 277 (375)
T ss_pred HHHhccCCCCcEEEEEcCC--EEEEEECCE------EEEEEeecccCCChhhhCCC-CCCeEEEEeHHHHHHHHHHHHHH
Confidence 99886 355789988755 888988766 89999999999998 7885 89999999999999999999999
Q ss_pred CC-------EEEEEEe-CCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCce
Q 024527 155 GD-------TVVISVT-KEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNT 224 (266)
Q Consensus 155 ~d-------~v~i~~~-~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~ 224 (266)
+. .|++.++ ++.+.+++.+ |.|++.+++. .++. |+++++.||.+||.++++++. +++
T Consensus 278 s~~~~~~~~~v~l~~~~~~~l~iss~~~e~G~a~e~i~------------~~~~~Ge~~~I~fN~~YL~d~L~~i~-~~~ 344 (375)
T PRK14944 278 FSKEQNNTNVVKFILTKEKSIEISSSNESLGTALEKII------------PLKVSANSFEIAFNAKYLEDILKVLS-VKE 344 (375)
T ss_pred hccccCCCceEEEEEcCCCEEEEEEcCcccCeEEEEEe------------cccccCCcEEEEEcHHHHHHHHhcCC-CCE
Confidence 63 2889985 7899998875 8898877641 1333 678999999999999999997 899
Q ss_pred EEEEecCC-CcEEEEEEeCCcEEEEEEEccc
Q 024527 225 VTISLSSE-LPVVVEYKIAEMGYIRFYLAPK 254 (266)
Q Consensus 225 v~l~~~~~-~Pl~l~~~i~~~g~~~~~iaPr 254 (266)
|.++|.+. .|+.++. .++ ....|+|+|.
T Consensus 345 v~i~~~~~~~p~~i~~-~~~-~~~~~lImPv 373 (375)
T PRK14944 345 IVFYFDSPLKPFIVTT-LEK-DSSIHLILPI 373 (375)
T ss_pred EEEEECCCCCCEEEEc-CCC-CceEEEEEeC
Confidence 99999987 5999986 333 4567999994
No 14
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=99.91 E-value=3.2e-22 Score=181.50 Aligned_cols=218 Identities=12% Similarity=0.159 Sum_probs=179.9
Q ss_pred ChhhHHHHHHHH---------HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEAI---------KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~l---------~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++.+ +++++++.|++.+++++++|+|++|+|.+...++.+. .+...+.|+.+.|..+
T Consensus 131 ~~~~L~~~i~~v~~a~s~~~~rpiL~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~------~~~~~viiP~k~l~~l 204 (367)
T PRK14940 131 PTKDLREMINQTIFAVSDDETRYFMNGVYVEFQYGNIICVATDGRRLAYIKKKGESSP------QEFSGVIVPPKILGII 204 (367)
T ss_pred CHHHHHHHHhhEeEEEcCCCCCceeEEEEEEEeCCEEEEEEEcCceEEEEEeccCCCc------cccceEEEcHHHHHHH
Confidence 366788888774 5689999999999999999999999999888776432 1223578999999877
Q ss_pred hcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccCC
Q 024527 79 LKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIGD 156 (266)
Q Consensus 79 lk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d 156 (266)
.|.+..++.+.+.++++ ++.|..++. .|.++++++++|+| .+|+ +++..+++++++|.++++|++.+++
T Consensus 205 ~kll~~~~~v~i~~~~~--~i~f~~~~~------~~~~rlidg~fPdy~~vip~-~~~~~~~i~~~~L~~al~R~~~~~~ 275 (367)
T PRK14940 205 NKKLSPEGNVTLCITSQ--NIFFFFGGY------KFSSVLIEGQFPNYKRVIPD-HQERSFCVGRVELMEALKRVSLLVE 275 (367)
T ss_pred HHhcCCCCcEEEEEeCC--EEEEEECCE------EEEEEEccccccchHhhCCC-CCCEEEEEEHHHHHHHHHHHHHHhc
Confidence 77766667888888755 687877655 89999999999988 5574 7899999999999999999999862
Q ss_pred ----EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEec
Q 024527 157 ----TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISLS 230 (266)
Q Consensus 157 ----~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~ 230 (266)
.|.+.++++.+++++.+ |.|++.+++. ++. |++.++.||.+||.+++++++ +++|.++|.
T Consensus 276 ~~~~~v~l~~~~~~l~l~~~~~e~G~~~e~i~-------------~~~~Ge~~~I~fN~~yl~d~L~~i~-~~~v~l~~~ 341 (367)
T PRK14940 276 QKSRRIFLTIQQGLLTLSSQENEIGDAQEEIA-------------CAYTGEEEVIALNYLYLEEPLKVFT-SKEVQVEFT 341 (367)
T ss_pred cCCceEEEEEeCCEEEEEEcCCCCccEEEEEE-------------EEecCCcEEEEECHHHHHHHHhCCC-CCEEEEEEC
Confidence 58899999999998864 8898888772 444 678999999999999999998 899999999
Q ss_pred CC-CcEEEEEEeCCcEEEEEEEcc-cCC
Q 024527 231 SE-LPVVVEYKIAEMGYIRFYLAP-KIE 256 (266)
Q Consensus 231 ~~-~Pl~l~~~i~~~g~~~~~iaP-r~~ 256 (266)
+. .|+.++. .+ +....|+|+| |++
T Consensus 342 ~~~~p~~i~~-~~-~~~~~~liMP~r~~ 367 (367)
T PRK14940 342 EAAKAITLRP-VP-ETDCFHIIMPMQTE 367 (367)
T ss_pred CCCCCEEEEe-CC-CCcEEEEEEeeecC
Confidence 87 5999986 33 3567799999 553
No 15
>PRK14947 DNA polymerase III subunit beta; Provisional
Probab=99.91 E-value=8.5e-22 Score=179.41 Aligned_cols=225 Identities=14% Similarity=0.186 Sum_probs=181.5
Q ss_pred ChhhHHHHHHH---------HHhhhceeeEEEeC-CceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHH
Q 024527 8 QGSLLKKVLEA---------IKELVNDANFDCSA-TGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSK 77 (266)
Q Consensus 8 ~~~~~k~i~~~---------l~~l~~~~~~~~~~-~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ 77 (266)
++..|+++++. .+++++|+.|++.+ +.++++|+|++|+|+....... ....+ ....+.||.+.|.+
T Consensus 131 ~~~~L~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~~-~~~~~---~~~~~iIP~k~l~e 206 (384)
T PRK14947 131 SGDFLQELIDRIAFCISDEDAMEAIACLKIKPVADNAIEVCGLNGHQFALLRFLNDD-IHAKL---PQEGILIQKKYLLE 206 (384)
T ss_pred CHHHHHHHHhheeeEeeccchhhhhceEEEEEcCCCEEEEEEcCccceEEEEccccc-ccccc---CCccEEEechHHHH
Confidence 36678888877 56889999999765 5699999999999998766532 10010 12357999999999
Q ss_pred HhcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCc--ceeeEEEEEehHHHHHHHHHhhc
Q 024527 78 MLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPE--AEYHAIVRMPSAEFARICKDLAS 153 (266)
Q Consensus 78 ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~--~~~~~~i~~~s~~~~~~i~~~~~ 153 (266)
++|.+. ++.+.+.++++ ++.|.+++. ...|..||+++.+|+| .+|+ .+|+.+++++..+|.++++|++.
T Consensus 207 l~kll~-~~~v~i~~~~~--~i~f~~~~~----~~~~~srLieG~fPdY~~vIP~~~~~~~~~~~i~r~~l~~al~Rvsi 279 (384)
T PRK14947 207 LKKWLG-ADEIELSISEK--RLFFRTGDG----KETFSLPLSYYQYPDYMNFLSKLQGDDVSNLEVDRKECMDALDRILI 279 (384)
T ss_pred HHHhCC-CCcEEEEEeCC--EEEEEECCc----EEEEEEEeeecccCcceeeCCCCCCCCCEEEEEEHHHHHHHHHHHHH
Confidence 999886 46788888755 788887643 2368899999999998 7886 27899999999999999999999
Q ss_pred cCC----EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEE
Q 024527 154 IGD----TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTI 227 (266)
Q Consensus 154 ~~d----~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l 227 (266)
+++ .|++..+++.+++++.+ |.|++++++ .++. |++.++.||.+||.+++++++ +++|.+
T Consensus 280 ~s~~~~~~v~l~~~~~~l~iss~~~e~G~a~E~i-------------~~~~~Ge~~~I~fN~~YL~d~L~~i~-~~~i~l 345 (384)
T PRK14947 280 FNTDNNRCTYFDFGPGELSLSAQGQDVGSATESL-------------EVTYSGDIKKIAFPTKNLIEILGHFQ-SDKITL 345 (384)
T ss_pred HhcCCCceEEEEEeCCEEEEEEcCCCCceEEEEE-------------EEEecCCcEEEEECHHHHHHHHhcCC-CCeEEE
Confidence 963 58899999999999875 889988887 2445 678999999999999999997 899999
Q ss_pred EecCC-CcEEEEEEeCCcEEEEEEEcc-cCCCCc
Q 024527 228 SLSSE-LPVVVEYKIAEMGYIRFYLAP-KIEEDE 259 (266)
Q Consensus 228 ~~~~~-~Pl~l~~~i~~~g~~~~~iaP-r~~~~~ 259 (266)
+|.+. .|+.++. .++ ....|+|+| |+.+++
T Consensus 346 ~~~~~~~p~~i~~-~~~-~~~~~lIMPvr~~~~~ 377 (384)
T PRK14947 346 TLTGAEGPCGITG-EDD-PDYLVIVMPMKIVEET 377 (384)
T ss_pred EECCCCCCEEEEc-CCC-CceEEEEeceEECCCc
Confidence 99987 5999985 333 456699999 786653
No 16
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=99.90 E-value=6.2e-22 Score=180.06 Aligned_cols=212 Identities=16% Similarity=0.299 Sum_probs=178.3
Q ss_pred hhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
+..|+++++. .+++++|++|++.++++.++|+|++|+|+....++.+. +..+.||.+.|.+++
T Consensus 138 ~~~L~~~i~kt~fA~s~~e~r~~L~Gv~l~~~~~~l~~vaTDg~RLA~~~~~~~~~~--------~~~~iIP~k~l~el~ 209 (376)
T PRK06673 138 TKQLIDAFKQTVFAVAKNESRPVLTGVHIELDHNKLICAATDSHRLAIRETLISTNM--------KANCIVPSATINELL 209 (376)
T ss_pred HHHHHHHHhhEeEEEecCCCChhceeEEEEEeCCEEEEEEecCceEEEEecccCCCC--------CCcEEEEHHHHHHHH
Confidence 6678888877 46789999999999999999999999999888775321 245799999999999
Q ss_pred cccCC-CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccCC
Q 024527 80 KCAGN-DDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIGD 156 (266)
Q Consensus 80 k~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d 156 (266)
|.+.. ++.+.+.++++ ++.|.+++. .+..||+++.+|+| .+|+ +|+.+++++.++|.++++|++.+++
T Consensus 210 kll~~~~~~v~i~~~~~--~i~f~~~~~------~~~srLieG~fPdy~~vip~-~~~~~v~i~r~~l~~al~Rvsi~~~ 280 (376)
T PRK06673 210 KLMNSNLEFVSIYLSES--HIIFTFGTT------TLYSRLIEGKYPNISTLIPN-EFQTVINIDRQRMLQGVDRSSLLAS 280 (376)
T ss_pred HhccCCCceEEEEEeCC--EEEEEECCE------EEEEEEecccCCChhhcCCC-CCcEEEEEEHHHHHHHHHHHHHhhc
Confidence 98864 45788888754 888888766 89999999999998 7885 8999999999999999999999973
Q ss_pred -----EEEEEE-eCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEE-e-cC-cEEEEEehHHHHhccccCCCCceEE
Q 024527 157 -----TVVISV-TKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIE-M-HE-PVSLTFALRYMNSFTRATPLSNTVT 226 (266)
Q Consensus 157 -----~v~i~~-~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~f~~~yL~~~~k~~~ls~~v~ 226 (266)
.|++.+ +++.+++++.+ |.|++++++. ++ . ++ ++++.||.+||.+++++++ +++|.
T Consensus 281 ~~~~~~v~l~~~~~~~l~i~s~~~e~G~a~e~i~-------------~~~~~Ge~~~~I~fN~~YLld~L~~i~-~e~v~ 346 (376)
T PRK06673 281 EWANNNVNLEIVNESTIQISSNASQIGKISETQQ-------------IDAIQGEKQLNISFDGRFMLDALRAIK-EETVT 346 (376)
T ss_pred cCCCCcEEEEEcCCCEEEEEEcCCCCCcEEEEEE-------------eeecCCCccEEEEECHHHHHHHHhcCC-CCEEE
Confidence 388888 68899998875 8899888772 33 2 55 7999999999999999997 89999
Q ss_pred EEecCC-CcEEEEEEeCCcEEEEEEEcc
Q 024527 227 ISLSSE-LPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 227 l~~~~~-~Pl~l~~~i~~~g~~~~~iaP 253 (266)
++|.++ .|+.++. .+ +..+.|+|+|
T Consensus 347 l~~~~~~~p~li~~-~~-~~~~~~limP 372 (376)
T PRK06673 347 LSFSGSMRPILIEA-GT-QSAAIHLISP 372 (376)
T ss_pred EEECCCCCCEEEEc-CC-CCceEEEEEe
Confidence 999987 5998885 33 3467799999
No 17
>PRK05643 DNA polymerase III subunit beta; Validated
Probab=99.90 E-value=4.5e-21 Score=174.13 Aligned_cols=214 Identities=18% Similarity=0.309 Sum_probs=178.5
Q ss_pred hhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
+..|+++++. .++++.++.|++.+++++++|+|++|++...+.++...++ +..+-|+.+.|.+++
T Consensus 133 ~~~l~~~i~~v~~a~~~~~~~piL~gi~~~~~~~~l~l~aTD~~rl~~~~~~~~~~~~~------~~~~~vp~k~l~ei~ 206 (367)
T PRK05643 133 QKTLKRLIEKTQFAMSTQETRYYLNGVLLEIEGNELRAVATDGHRLAVRKLELEEGSLG------DFSVIIPRKTLLELQ 206 (367)
T ss_pred HHHHHHHHhheeEEeecCCccccccEEEEEEeCCEEEEEEeccceeEEEEecccCCccc------CceEEEchHHHHHHH
Confidence 5677777775 4567899999999999999999999999988887644332 345789999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccC--
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIG-- 155 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~-- 155 (266)
|.+..++.+.+..+++ ++.|..++. .|.++++++++|+| .+|. +++..+.+++++|.++++++..++
T Consensus 207 k~l~~~~~v~i~~~~~--~~~~~~~~~------~~~~~li~g~yP~~~~~ip~-~~~~~~~i~~~~L~~~i~rv~~~~~~ 277 (367)
T PRK05643 207 KLLDDEEPVEIFISDN--QILFEFGNT------IFTSKLIDGKFPDYRRVIPK-EFDKKLTVDRKELLQALERASILSNE 277 (367)
T ss_pred HhcCCCCcEEEEEeCC--EEEEEECCE------EEEEEEeeecCCChhhhCCC-CCCEEEEEEHHHHHHHHHHHHHHhcC
Confidence 9887556788888654 788887655 89999999999988 3675 889999999999999999999883
Q ss_pred --CEEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEecC
Q 024527 156 --DTVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISLSS 231 (266)
Q Consensus 156 --d~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~ 231 (266)
+.|.+.++++.+++++.+ +.|.+...+. ++. +++.++.||.+||.+++|+++ +++|.+++++
T Consensus 278 ~~~~i~l~~~~~~l~~~a~~~~~g~a~~~i~-------------~~~~g~~~~i~~n~~yL~d~l~~~~-~~~v~i~~~~ 343 (367)
T PRK05643 278 KSRGVKLSLSEGQLKISANNPEQGEAEEELE-------------VEYSGEELEIGFNVKYLLDVLKALD-SEEVRLSFND 343 (367)
T ss_pred CCceEEEEEeCCEEEEEEECCCCCcEEEEEE-------------EEecCCcEEEEEcHHHHHHHHhcCC-CCEEEEEECC
Confidence 468899999999998875 7888777662 333 678999999999999999998 8899999998
Q ss_pred C-CcEEEEEEeCCcEEEEEEEcc
Q 024527 232 E-LPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 232 ~-~Pl~l~~~i~~~g~~~~~iaP 253 (266)
+ .|+.+++ .+++.+.|+|+|
T Consensus 344 ~~~p~~i~~--~~~~~~~~limP 364 (367)
T PRK05643 344 ANSPFLIRP--PDDDSFLYVIMP 364 (367)
T ss_pred CCCCEEEEc--CCCCceEEEEEe
Confidence 6 6999987 345678999999
No 18
>PRK14941 DNA polymerase III subunit beta; Provisional
Probab=99.89 E-value=8.7e-21 Score=172.54 Aligned_cols=221 Identities=15% Similarity=0.187 Sum_probs=178.0
Q ss_pred ChhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++. .+++++++.|++.+++|+++|+|++|++...+.+.... ..+..+.|+.+.|..+
T Consensus 134 ~~~~L~~~i~~v~~a~s~~~~rpiL~Gv~l~~~~~~l~lvATDg~Rla~~~~~~~~~~------~~~~~~iiP~k~l~el 207 (374)
T PRK14941 134 ETSELLDLIQKTIFACSVDGMRPAMMGVLFELEGNTITAVSTDGHRLVRCRKNSSVGV------EEKQKIVVPARVLSIL 207 (374)
T ss_pred CHHHHHHHHhheeEEEecccchhhhceEEEEEeCCEEEEEEecCeeEEEEEecccCCc------cccceEEechHHHHHH
Confidence 36678888777 45789999999999999999999999999877664321 2235689999999766
Q ss_pred hcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccC-
Q 024527 79 LKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIG- 155 (266)
Q Consensus 79 lk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~- 155 (266)
.|.... +.+.+.++.+..++.|..++. .|..+++++++|+| .+|. +++.++.++++.|.++++|++.++
T Consensus 208 ~kll~~-~~v~i~~~~~~~~i~~~~~~~------~~~s~Li~g~fPdy~~viP~-~~~~~i~i~~~~L~~al~rv~~~~~ 279 (374)
T PRK14941 208 QKLAQH-ETVTMSIDSERRFVRFICGNV------VLDAALIVEPYPNYEAVIPV-ENDKKLVINRSNIYDSVKRVGRFSS 279 (374)
T ss_pred HHhCCC-CceEEEEEcCCCEEEEEECCE------EEEEEEEeecCCCccccCCC-CCCEEEEEeHHHHHHHHHHHHHHcc
Confidence 666553 367787765555888888665 78899999999988 5674 899999999999999999999875
Q ss_pred -CEEEEEEeCCeEEEEEEe-cce-eEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEecC
Q 024527 156 -DTVVISVTKEGVKFSTRG-DIG-TANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISLSS 231 (266)
Q Consensus 156 -d~v~i~~~~~~l~~s~~g-d~g-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~ 231 (266)
+.+++.++++.+++++.+ |.| .+.+++ .++. |+++++.||.+||.++++++. +++|.++|.+
T Consensus 280 ~~~v~~~~~~~~l~l~~~~~~~g~~~~e~i-------------~~~~~G~~~~I~fN~~yl~d~L~~~~-~~~v~l~~~~ 345 (374)
T PRK14941 280 IGDIKISVEGSVLKVMAENTNEGESAQEEL-------------PCSYTGEDITIGFNSKFIEAALAHLD-EEEIIIELSS 345 (374)
T ss_pred CCceEEEEECCEEEEEEECcccccceEEEE-------------EeEeCCCcEEEEEcHHHHHHHHhcCC-CCEEEEEECC
Confidence 358999999999999886 776 566666 2444 678999999999999999997 8999999998
Q ss_pred C-CcEEEEEEe-CCcEEEEEEEcc-cCC
Q 024527 232 E-LPVVVEYKI-AEMGYIRFYLAP-KIE 256 (266)
Q Consensus 232 ~-~Pl~l~~~i-~~~g~~~~~iaP-r~~ 256 (266)
+ .|+.++..- .++..+.|+|+| |+.
T Consensus 346 ~~~p~~i~~~~~~~~~~~~~limPvr~~ 373 (374)
T PRK14941 346 PTTAVIFKPKKEEENDDLIILVMPVRIN 373 (374)
T ss_pred CCCCEEEecCCCCCCCceEEEEeeEEeC
Confidence 7 599998531 234567899999 653
No 19
>PRK14945 DNA polymerase III subunit beta; Provisional
Probab=99.88 E-value=1.6e-20 Score=170.31 Aligned_cols=212 Identities=17% Similarity=0.289 Sum_probs=175.2
Q ss_pred ChhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++. .+++++++.|++.+++++++|+|++|.+...+.++. +.+..+.|+.+.|.++
T Consensus 128 ~~~~L~~~i~~v~~avs~~~~~piL~gv~l~~~~~~l~lvATDg~rla~~~~~~~~--------~~~~~~iip~k~l~el 199 (362)
T PRK14945 128 SAGELAKALTHVRYAASNEEFQAIFRGVKLEHSPQGLRAVASDGYRLAIYDLPASQ--------GQGRKLVIPARSADEL 199 (362)
T ss_pred CHHHHHHHHhhEEEEEecccchhheeeEEEEEeCCEEEEEEEccceEEEEEeccCC--------CCCceEEEEHHHHHHH
Confidence 36677777776 567899999999999999999999999998876542 2346789999999999
Q ss_pred hcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccCC
Q 024527 79 LKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIGD 156 (266)
Q Consensus 79 lk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d 156 (266)
+|.+.+++.+++.++++ ++.|..++. .|.++++++++|+| .+| .+++..+.++++.|.++++++..+++
T Consensus 200 ~k~l~~~~~v~i~~~~~--~i~~~~~~~------~~~~~lidg~fP~~~~vip-~~~~~~v~i~~~~L~~~l~r~~~~~~ 270 (362)
T PRK14945 200 VRVLKDGDEASLALGEG--VLTLTTGGV------RMNLKLMEGEFPDYERVIP-QDFKLQVTLPAEALREAVNRVAVLSD 270 (362)
T ss_pred HHhcCCCCcEEEEEcCC--EEEEEECCE------EEEEEeecccCCChhhhCC-CCCCEEEEEEHHHHHHHHHHHhhhhc
Confidence 99997655788888644 788877655 89999999999988 457 37889999999999999999998763
Q ss_pred -----EEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEe-cC--cEEEEEehHHHHhccccCCCCceEEEE
Q 024527 157 -----TVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEM-HE--PVSLTFALRYMNSFTRATPLSNTVTIS 228 (266)
Q Consensus 157 -----~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~f~~~yL~~~~k~~~ls~~v~l~ 228 (266)
.|.+.++++.+++++.++.|.+..++. ++. ++ ++++.||.+||.++++++. . +|.++
T Consensus 271 ~~~~~~v~l~~~~~~l~~~a~~~~g~a~~~i~-------------~~~~G~~~~~~i~fN~~yl~d~L~~~~-~-~v~l~ 335 (362)
T PRK14945 271 RNANNRVELLVAEGRLRLTAEGDYGRGQEELA-------------VTQEGSEPAMALAYNARYLLDALAPIE-G-DARLG 335 (362)
T ss_pred cCCCccEEEEEECCEEEEEecCCCceEEEEEE-------------EEeecCCCCEEEEECHHHHHHHHHhCC-C-cEEEE
Confidence 378888999999999888888887762 444 33 7999999999999999986 4 69999
Q ss_pred ecCC-CcEEEEEEeCCcEEEEEEEcc
Q 024527 229 LSSE-LPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 229 ~~~~-~Pl~l~~~i~~~g~~~~~iaP 253 (266)
|.++ .|+.++. .+ +..+.|+|+|
T Consensus 336 ~~~~~~p~~i~~-~~-~~~~~~limP 359 (362)
T PRK14945 336 FSGPTSPSVLRS-VD-DPGYLAVVVP 359 (362)
T ss_pred ECCCCCCEEEEe-CC-CCcEEEEEEe
Confidence 9987 5999986 33 3457899999
No 20
>PRK07761 DNA polymerase III subunit beta; Validated
Probab=99.88 E-value=3.5e-20 Score=168.82 Aligned_cols=222 Identities=15% Similarity=0.240 Sum_probs=179.5
Q ss_pred ChhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++. .++++.++.|++.+++|+++|+|++|+++....+.... ++++..+.|+.+.|.++
T Consensus 128 ~~~~L~~~i~~v~~a~s~~~~~piL~gV~l~~~~~~L~l~ATDg~rLa~~~~~~~~~~-----~~~~~~~iIP~k~l~ei 202 (376)
T PRK07761 128 DADAFAEAVSQVAVAAGRDDTLPMLTGVRVEIEGDTVTLAATDRYRLAVRELTWKPAS-----PDISAAALVPARTLSDT 202 (376)
T ss_pred CHHHHHHHHhhEeEEEEcccchhhhceEEEEEeCCEEEEEEECCceEEEEEeccCCCC-----CCcceeEEEEhHHHHHH
Confidence 35667777766 46789999999999999999999999999876654322 23346789999999999
Q ss_pred hcccCCCceEEEEEc---CCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhc
Q 024527 79 LKCAGNDDIITLKAD---DGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLAS 153 (266)
Q Consensus 79 lk~~~~~d~l~l~~~---~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~ 153 (266)
+|.+..++.+.+.++ ++...+.|..++. .|.++++++++|+| .+|+ ++...+.+++++|.++++|+..
T Consensus 203 ~k~l~~~~~v~i~~~~~~~~~~~i~~~~~~~------~~~~~li~g~fP~~~~vip~-~~~~~~~i~~~~L~~~l~r~~~ 275 (376)
T PRK07761 203 AKSLGSGGNVSIALSTGVGGEGLIGFEGGGR------RTTTRLLDGEFPKVRRLFPD-EHPAVAVVETAPLIEAIKRVAL 275 (376)
T ss_pred HHhcCCCCcEEEEEecCcCCCCEEEEEECCE------EEEEEEecccCCChHhhCCC-CCCEEEEEEHHHHHHHHHHHHH
Confidence 999976667888886 2234677766554 89999999999988 4574 7778999999999999999998
Q ss_pred cCC---EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEE
Q 024527 154 IGD---TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTIS 228 (266)
Q Consensus 154 ~~d---~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~ 228 (266)
+++ .|.+.++++.+++++.+ |.|.+..++ .++. |+++++.||.+||.+++|+++ +++|.++
T Consensus 276 ~~~~~~~v~l~~~~~~l~l~~~~~~~G~~~e~i-------------~~~~~Ge~~~i~fN~~yl~d~L~~~~-~~~v~l~ 341 (376)
T PRK07761 276 VAERNAPVRLEFSDGQLTLSAGGGDDAQASEAL-------------EADLTGEDLTIAFNPQYLLDGLSALH-TPRVRFG 341 (376)
T ss_pred HhcCCceEEEEEeCCEEEEEEcCCCcceEEEEE-------------EEEecCCcEEEEECHHHHHHHHhcCC-CCeEEEE
Confidence 853 58999999999999865 889888877 2444 678999999999999999998 8999999
Q ss_pred ecCC-CcEEEEEEeCC----cEEEEEEEcc-cC
Q 024527 229 LSSE-LPVVVEYKIAE----MGYIRFYLAP-KI 255 (266)
Q Consensus 229 ~~~~-~Pl~l~~~i~~----~g~~~~~iaP-r~ 255 (266)
+.+. .|+.++..-++ +..+.|+|+| |+
T Consensus 342 ~~~~~~p~~i~~~~~~~~~~~~~~~~limPvr~ 374 (376)
T PRK07761 342 FTTPSKPALLTGQPEDDGEPSTDYRYLLMPVRL 374 (376)
T ss_pred ECCCCCCEEEecCcccccCCCCceEEEEEeeec
Confidence 9987 59999864221 2468899999 54
No 21
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=99.88 E-value=2.3e-20 Score=168.92 Aligned_cols=214 Identities=12% Similarity=0.229 Sum_probs=173.6
Q ss_pred ChhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++. .+++++|+.|++.+++|+++|+|++|+|+....+... .+..+.||.+.|.++
T Consensus 131 ~~~~l~~~i~kt~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLA~~~~~~~~~--------~~~~~iIP~k~l~el 202 (366)
T PRK14946 131 NAKNLKRAIKNTAFATTNNPNQPILSAINLKSEDNFLHFSATDTIRFASEKIEISNP--------SRIDISISAKNLKDF 202 (366)
T ss_pred CHHHHHHHHhhEEEEEeCCCCcccceEEEEEEeCCEEEEEEecchheEEEEeccCCC--------CcceEEEeccCHHHH
Confidence 36788888887 4678999999999999999999999999988777432 124578899999998
Q ss_pred hcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcc-eeeEEEEEehHHHHHHHHHhhccC
Q 024527 79 LKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEA-EYHAIVRMPSAEFARICKDLASIG 155 (266)
Q Consensus 79 lk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~-~~~~~i~~~s~~~~~~i~~~~~~~ 155 (266)
+.. ..++.+.+.++++ ++.|.+++. .+.++|+++.+|+| .+|+. +|+.+++++.++|.++++|++.++
T Consensus 203 l~~-~~~~~v~i~~~~~--~i~f~~~~~------~~~srLieG~fPdy~~viP~~~~~~~~~~i~r~~l~~al~Rvsl~a 273 (366)
T PRK14946 203 IPP-ELDKDIELFIESS--KISYTYDNL------TIQSRIFTIEYKDISNVLPKDSEILYSLTIEKKEILDLIDKATIIT 273 (366)
T ss_pred hcc-cCCCcEEEEEeCC--EEEEEECCE------EEEEEEecccCCCHHHhCCCCCCccEEEEEEHHHHHHHHHHhheee
Confidence 431 2345788888754 788888776 89999999999998 78863 377999999999999999999997
Q ss_pred C----EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEe
Q 024527 156 D----TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISL 229 (266)
Q Consensus 156 d----~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~ 229 (266)
. .|++.++++.+.+++.+ |.|.+.+++.. .++. |+++++.||.+||.++++++. ++|.++|
T Consensus 274 ~~~~~~v~l~~~~~~l~lss~~~e~G~a~e~i~~-----------~~~~~Ge~~~IafN~~YL~D~L~~i~--~~v~l~~ 340 (366)
T PRK14946 274 PGKDNVINFSLSKNELKGYISQYESGQSNVKTKN-----------VLRFSGELAQVNVNYKYLKDAISVFD--KVINIFI 340 (366)
T ss_pred cCCCceEEEEEcCCEEEEEEECCCCceEEEEecc-----------cccccCCcEEEEEcHHHHHHHHHhCC--CeEEEEE
Confidence 3 48999999999998875 88998887620 1323 678999999999999999997 5699999
Q ss_pred cCC-CcEEEEEEeCCcEEEEEEEcc
Q 024527 230 SSE-LPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 230 ~~~-~Pl~l~~~i~~~g~~~~~iaP 253 (266)
.++ .|+.++. . ++....|+||-
T Consensus 341 ~~~~~p~~i~~-~-~~~~~~~li~~ 363 (366)
T PRK14946 341 NEKKTKMLIVS-P-EKKEICQLVGL 363 (366)
T ss_pred CCCCCCEEEEC-C-CCCCeEEEEEE
Confidence 987 5998875 3 34566788774
No 22
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
Probab=99.87 E-value=5.2e-19 Score=155.59 Aligned_cols=251 Identities=16% Similarity=0.250 Sum_probs=179.4
Q ss_pred eeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEEC-CCCeEEEEEEecCC-CcceeeeCC----cEEEEEEhhhH
Q 024527 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMD-SSHVALVALLLRSE-GFEHYRCDR----NISMGMNLNNV 75 (266)
Q Consensus 2 f~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D-~~r~a~v~~~l~~~-~F~~y~~~~----~~~~gi~l~~L 75 (266)
|+|++.+.+.|++++.+++++-+.|.++++++.+.+.... ...-.++|+.++.+ .|++|++++ .+.+.++++.|
T Consensus 3 Fka~i~~~~~~~~~~~~~~kl~k~~vlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~~F~~y~i~s~~~N~I~le~~~~~L 82 (292)
T PF04005_consen 3 FKATISDIKLFKKFVSTISKLGKRCVLRLTPERLHFISTSDDSDGIQVWCELPQDSLFSEYRIQSASENEIYLEVNIDSL 82 (292)
T ss_dssp EEEEEE-HHHHHHHHHHHHHH-SEEEEEE-SSEEEEEEE-SSTT--EEEEEEEGGGT-SEEEEE-SSSS-EEEEEEHHHH
T ss_pred ceEEecCHHHHHHHHHHHHHhhCEEEEEEeCCEEEEEEecCCCCeEEEEEEEChhhcCcccEEEeCCCCEEEEEEcHHHH
Confidence 8999999999999999999999999999999999999874 67888999999977 999999974 69999999999
Q ss_pred HHHhcccCCCceEEEEEc--CCCCeEEEEEeCCCC---CeEEEEEEeeeecCC---CCCCCCcc-eeeEEEEEeh-HHHH
Q 024527 76 SKMLKCAGNDDIITLKAD--DGSDTVTFMFESPTQ---DKIADFEMKLMDIDS---EHLGIPEA-EYHAIVRMPS-AEFA 145 (266)
Q Consensus 76 ~~ilk~~~~~d~l~l~~~--~~~~~l~i~~~~~~~---~~~~~~~l~li~~~~---~~~~ip~~-~~~~~i~~~s-~~~~ 145 (266)
.++||.+.+...++|.+. ++.+.|.|.+..... .+...+.+|.--... +.+..|.. +++..+.||+ ..++
T Consensus 83 ~raLrs~~~a~~~~ikL~kk~~~p~L~~~~~~~~~~~~~~~v~hdiPV~vl~~~~~~~~~eP~~~~~dv~i~LP~l~~l~ 162 (292)
T PF04005_consen 83 LRALRSADNASSVKIKLTKKGRMPCLSFEITGTSSSGRSRIVVHDIPVRVLPRREWEELQEPMVPDPDVSIYLPPLKQLR 162 (292)
T ss_dssp HHHHCTCSSCSEEEEEEE-S-SSSEEEEEEEE--SSST-EEEEEEEEBEE--GGGGGGGS-------SEEEE-S-HHHHH
T ss_pred HHHHHhhccCceeEEehhhccCCcEEEEEEEeeccCCCccEEEEECCeEecCHHHHHHhhhcccCCCCEEEECCCHHHHH
Confidence 999999987778888873 356689998877643 344566777644322 35667765 6788899999 9999
Q ss_pred HHHHHhhccCCEEEEEEe-CCeEEEEEEecceeEEEEEeecccCCCCC----------------Cc--eEEEecCcEEEE
Q 024527 146 RICKDLASIGDTVVISVT-KEGVKFSTRGDIGTANIVLRQNTTVDKPE----------------EA--TIIEMHEPVSLT 206 (266)
Q Consensus 146 ~~i~~~~~~~d~v~i~~~-~~~l~~s~~gd~g~~~~~~~~~~~~~~~~----------------~~--~~~~~~~~~~~~ 206 (266)
.+++++..+|+.++|+++ .|.+.|..+.|..+....|+...+..-.. .. -..+-++.+++.
T Consensus 163 ~~veR~k~~s~~v~i~an~~G~L~L~v~t~~~~v~t~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~ 242 (292)
T PF04005_consen 163 SIVERMKNLSDYVTISANMNGELRLSVETDSVSVETEFRGLENPPLDPAELNTVDQLPSEDDSDSDQQEERDPEEFASVR 242 (292)
T ss_dssp HHHHHHHTT-SEEEEEE-SSS-EEEEEE-SSEEEEEEE-S------------------------SSSSS-------EEEE
T ss_pred HHHHHHhccCceEEEEEECCCcEEEEEEeCcEEEEEEECCCCCCccccccccccccccccccccccccccCCCCcEEEEE
Confidence 999999999999999999 57999999999999999997643322100 00 001223458999
Q ss_pred EehHHHHhccccCCCC-ceEEEEecCCCcEEEEEEeCCcEEEEEEEc
Q 024527 207 FALRYMNSFTRATPLS-NTVTISLSSELPVVVEYKIAEMGYIRFYLA 252 (266)
Q Consensus 207 f~~~yL~~~~k~~~ls-~~v~l~~~~~~Pl~l~~~i~~~g~~~~~ia 252 (266)
.+.|-+..+++...++ +.|.+.+.++..+.+...+++++.++|||.
T Consensus 243 Vd~K~~~~~l~~~~~~p~~vi~~I~~~~~~vl~~~~~~~~~l~yyip 289 (292)
T PF04005_consen 243 VDIKDLAKFLKSHQLSPSRVICCICHNKALVLHVYLDEDVSLTYYIP 289 (292)
T ss_dssp EEHHHHHHHHHH--S--SEEEEEEETTTEEEEEEEE-TTEEEEEEEE
T ss_pred EEHHHHHHhhCccccCCCEEEEEEccCCeEEEEEEEcCCEEEEEEEe
Confidence 9999999999987776 899999999999999998878899999985
No 23
>smart00480 POL3Bc DNA polymerase III beta subunit.
Probab=99.87 E-value=1e-19 Score=163.93 Aligned_cols=213 Identities=17% Similarity=0.324 Sum_probs=174.0
Q ss_pred ChhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++. .+++++++.|++.+++++++|+|++|.+...+.++.+. .+..+.||.+.|.++
T Consensus 114 ~~~~L~~~i~~v~~a~s~~~~~piL~Gi~~~~~~~~l~lvATDg~rla~~~~~~~~~~-------~~~~~ivP~k~l~el 186 (345)
T smart00480 114 PTKLLKEGIEKTAFAVSTDETRPVLNGVNLEISNGELRLVATDGHRLAVREIKLESEE-------DDFSVIIPRKSLLEL 186 (345)
T ss_pred CHHHHHHHHhhEEEEEecCCCcceeeEEEEEEECCEEEEEEEcCceEEEEEeccCCCC-------CcceEEEehHHHHHH
Confidence 36677777775 45679999999999999999999999999877654321 135689999999999
Q ss_pred hcccCC-CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccC
Q 024527 79 LKCAGN-DDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIG 155 (266)
Q Consensus 79 lk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~ 155 (266)
+|.+.+ ++.+++.++++ ++.|..++. .|.++++++++|+| .+| .+++.++.+++.+|.++++|+..++
T Consensus 187 ~k~l~~~~~~v~i~~~~~--~~~~~~~~~------~~~~~li~g~fP~~~~vip-~~~~~~~~i~~~~L~~ai~rv~~~~ 257 (345)
T smart00480 187 NKLLTDNEELVEIFISSN--QILFETGNV------IFTSRLIDGEFPDYKRVIP-KEFETKLTVNRKELKEALKRVALLA 257 (345)
T ss_pred HHhccCCCCcEEEEEeCC--EEEEEECCE------EEEEEEeeecCCCchhhCC-CCCCEEEEEEHHHHHHHHHHHhhhh
Confidence 999875 45788888754 788877665 89999999999988 356 4888999999999999999999886
Q ss_pred C----EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEe
Q 024527 156 D----TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISL 229 (266)
Q Consensus 156 d----~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~ 229 (266)
+ .|.+.++++++.+++.+ |.|.+.+++. ++. ++++++.||.+||.++++++. +++|.+++
T Consensus 258 ~~~~~~v~l~~~~~~l~~~a~d~~~g~~~e~i~-------------~~~~g~~~~i~fN~~yL~d~l~~~~-~~~v~l~~ 323 (345)
T smart00480 258 NEKNRSVKLTLEEGQLKLTANSPEVGEAEEEVD-------------VDYEGEDLEIAFNPKYLLDALKALK-SEEIELKF 323 (345)
T ss_pred cCCCceEEEEEeCCEEEEEEcCCccceEEEEEE-------------EEecCCcEEEEECHHHHHHHHhcCC-CCEEEEEE
Confidence 4 58899999999999875 8898888773 334 678999999999999999997 89999999
Q ss_pred cCCC-cEEEEEEeCCcEEEEEEEc
Q 024527 230 SSEL-PVVVEYKIAEMGYIRFYLA 252 (266)
Q Consensus 230 ~~~~-Pl~l~~~i~~~g~~~~~ia 252 (266)
.+.. |+.++. .++ ..+.|+|+
T Consensus 324 ~~~~~p~~i~~-~~~-~~~~~lim 345 (345)
T smart00480 324 TDSSSPFLISP-PDD-EKLKYLIM 345 (345)
T ss_pred CCCCCCEEEEc-CCC-CceEEEeC
Confidence 9875 999985 333 34456653
No 24
>cd00140 beta_clamp Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds.
Probab=99.86 E-value=3e-19 Score=161.76 Aligned_cols=216 Identities=18% Similarity=0.326 Sum_probs=177.2
Q ss_pred ChhhHHHHHHHHHh---------hhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEAIKE---------LVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~l~~---------l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
+...|.++++.+.. ++.++.|++.++++++.|+|++|.+...+.++... .++..+.+|.+.|.++
T Consensus 130 ~~~~l~~~l~~v~~~~~~~~~~~~l~gI~~~~~~~~l~l~atD~~~~~~~~~~~~~~~------~~~~~~~i~~~~l~~l 203 (365)
T cd00140 130 PASELKELIKKTAFAVSTDETRPILNGVLLEIEDNKLRAVATDGHRLALREIELESGA------EEDFNVIVPRKTLNEL 203 (365)
T ss_pred CHHHHHHHHhhEEEEecCccCcccceEEEEEEECCEEEEEEEcCceEEEEEeecCCCC------ccCceEEEechHHHHH
Confidence 36677777776443 34689999999999999999999998888777532 2346789999999999
Q ss_pred hcccC-CCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCC--CCcceeeEEEEEehHHHHHHHHHhhccC
Q 024527 79 LKCAG-NDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLG--IPEAEYHAIVRMPSAEFARICKDLASIG 155 (266)
Q Consensus 79 lk~~~-~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~--ip~~~~~~~i~~~s~~~~~~i~~~~~~~ 155 (266)
+|.++ .++.+.|...++ .+.|..++. .|.++++++++|+++ +|. .++.++.++++.|.++++++..++
T Consensus 204 ~k~l~~~~~~v~i~~~~~--~l~i~~~~~------~~~~~li~~~yP~~~~~ip~-~~~~~~~i~~~~L~~~l~~~~~~~ 274 (365)
T cd00140 204 LKLLEDDDEEVEISISEN--QILFKLGNT------TFTSRLIEGEFPDYERVIPK-EFEKSLTVDREELLEALKRVSLLS 274 (365)
T ss_pred HHhccCCCCcEEEEEeCC--EEEEEECCE------EEEEEEEeeECCCchhcCCC-CCcEEEEEEHHHHHHHHHHHhhhh
Confidence 99987 467888888654 788877654 899999999999873 575 588999999999999999999987
Q ss_pred C----EEEEEEeCCeEEEEEEec-ceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEe
Q 024527 156 D----TVVISVTKEGVKFSTRGD-IGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISL 229 (266)
Q Consensus 156 d----~v~i~~~~~~l~~s~~gd-~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~ 229 (266)
+ .|.+.++++++++++.++ .|.+...+. .+. +++.++.|+.+||.+++|+.+ +++|.+++
T Consensus 275 ~~~~~~v~l~~~~~~l~~~a~~~~~~~~~~~~~-------------~~~~g~~~~i~~~~~yL~d~lk~~~-~~~v~i~~ 340 (365)
T cd00140 275 NEKNRGVKLEISEGQLKLSANNPEIGEAEEELE-------------VEYEGEELEIGFNPKYLLDALKAID-SEEVRLSF 340 (365)
T ss_pred ccCCceEEEEEeCCEEEEEEcCCCCceEEEEEE-------------EEecCCcEEEEECHHHHHHHHhcCC-CCEEEEEE
Confidence 5 799999999999999875 577766662 333 567899999999999999987 78999999
Q ss_pred cCC-CcEEEEEEeCCcEEEEEEEccc
Q 024527 230 SSE-LPVVVEYKIAEMGYIRFYLAPK 254 (266)
Q Consensus 230 ~~~-~Pl~l~~~i~~~g~~~~~iaPr 254 (266)
+++ .|+.+++.- ++.+.|+|+|.
T Consensus 341 ~~~~~p~~i~~~~--~~~~~~limP~ 364 (365)
T cd00140 341 TDSNSPVLITPED--DDNFLYLIMPV 364 (365)
T ss_pred CCCCCCEEEEcCC--CCcEEEEEEeC
Confidence 998 799998753 47899999993
No 25
>TIGR00663 dnan DNA polymerase III, beta subunit. University).
Probab=99.85 E-value=7.4e-19 Score=159.67 Aligned_cols=215 Identities=18% Similarity=0.291 Sum_probs=172.2
Q ss_pred ChhhHHHHHHHHH---------hhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEAIK---------ELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~l~---------~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++.+. +++.++.|++.++.+++.|+|++|+|+....++... ..+..+.||.+.|..+
T Consensus 130 ~~~~l~~~i~~v~~a~~~~~~r~~L~gi~~~~~~~~l~~~atDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el 203 (367)
T TIGR00663 130 PSDVLKEAINQTAFAAGEDETRPVLNGVLIEQKGKTLLLVATDGHRLAVCKLKSEVSD------EEDFSVIIPAKALNEL 203 (367)
T ss_pred CHHHHHHHHhhEEEEEecCCCCcccceEEEEEeCCEEEEEEecchheEEEeccccCCC------CccceEEEecHHHHHH
Confidence 4677888887743 345689999999999999999999999876654221 2245689999999999
Q ss_pred hcccCCCceEEE-EEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccC
Q 024527 79 LKCAGNDDIITL-KADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIG 155 (266)
Q Consensus 79 lk~~~~~d~l~l-~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~ 155 (266)
.|.+.+++.+.+ ..+ ++++.|..++. .|.++++++++|+| .+|+ +++.+++++..+|.++++|+..++
T Consensus 204 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~------~~~~rli~g~yP~y~~vip~-~~~~~~~i~~~~L~~al~rv~~~~ 274 (367)
T TIGR00663 204 LKLLSENGSVVLKSLN--DQLVYIELGNY------KFTSKLIEGNYPDYKSVIPK-EQKNSFTVNREELKEAIKRVSLLA 274 (367)
T ss_pred HHHhcCCCCeEEEEEe--CCEEEEEECCE------EEEEEEeeccCCCccccCCC-CCCEEEEEeHHHHHHHHHHHHHHh
Confidence 998875544444 333 34788887765 89999999999987 5674 788999999999999999998876
Q ss_pred C----EEEEEEeCC-eEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEE
Q 024527 156 D----TVVISVTKE-GVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTIS 228 (266)
Q Consensus 156 d----~v~i~~~~~-~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~ 228 (266)
+ .|.+..+++ .+.+++.+ +.|.++..+. +.. +++.++.||.+||.++++++. +++|.++
T Consensus 275 ~~~~~~v~~~~~~~~~l~i~~~~~~~g~~~e~i~-------------~~~~g~~~~i~fN~~yL~d~l~~~~-~~~v~l~ 340 (367)
T TIGR00663 275 DEKRNLVLTLSENGKKLKESSDTQEIGEAEEEIE-------------VAYDGEDLVIAFNIKYLLDALKALK-SKEIQIQ 340 (367)
T ss_pred cCCCceEEEEECCCCeEEEEEcCCCCccEEEEEE-------------EEecCCcEEEEECHHHHHHHHhcCC-CCEEEEE
Confidence 3 588888888 99998875 7888887772 334 678999999999999999997 8999999
Q ss_pred ecCC-CcEEEEEEeCCcEEEEEEEcc
Q 024527 229 LSSE-LPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 229 ~~~~-~Pl~l~~~i~~~g~~~~~iaP 253 (266)
+.+. .|+.++.. ++..+.|+|+|
T Consensus 341 ~~~~~~p~~i~~~--~~~~~~~limP 364 (367)
T TIGR00663 341 FNDPSKPLLIEPE--NDEKITYLIMP 364 (367)
T ss_pred ECCCCCCEEEecC--CCCcEEEEEEe
Confidence 9986 59988753 33457799999
No 26
>PRK14943 DNA polymerase III subunit beta; Provisional
Probab=99.84 E-value=1.1e-18 Score=158.86 Aligned_cols=221 Identities=15% Similarity=0.222 Sum_probs=173.1
Q ss_pred ChhhHHHHHHHHH---------hhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEAIK---------ELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~l~---------~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
+++.|+++++.+. +++.++.|++.++.++++|+|++|.|+....++.. ++.+..+.++.+.|..+
T Consensus 130 ~~~~l~~~i~~v~~a~s~~~~~~~L~gv~l~~~~~~l~l~aTDg~rla~~~~~~~~~------~~~~~~~ivp~k~l~~l 203 (374)
T PRK14943 130 EQSELRDMLKSVEYAQSTDETRYILNGVYFNFRDGKLTLVATDGRRLALAETELEFP------EDQAGDAILPAKTVGEL 203 (374)
T ss_pred CHHHHHHHHhhEeEEeccCcCCcceEEEEEEEeCCEEEEEEecchhEEEEEeccCCC------CCcCceEEEehhHHHHH
Confidence 3567777777643 34568999999999999999999999877766432 12234578899999888
Q ss_pred hcccCCCceEEEEEcCCCCeEEEEEeCC--CCC--eEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhh
Q 024527 79 LKCAGNDDIITLKADDGSDTVTFMFESP--TQD--KIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLA 152 (266)
Q Consensus 79 lk~~~~~d~l~l~~~~~~~~l~i~~~~~--~~~--~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~ 152 (266)
+|.+..++.+.+.+++. .+.+.+... ..| .-+.+..+++++++|+| .+|. +++.++++++.+|.++++|+.
T Consensus 204 ~~~l~~~~~V~i~~~~~--~~~f~~~~~~~~~~~~~~~~~~~~li~g~fP~y~~vip~-~~~~~~~i~~~~l~~al~r~~ 280 (374)
T PRK14943 204 RRLLDKGGKLKIRFNDR--QAAFEISIGEDSSGLANDTYLISKLVEGNYPNYRQVIPK-ETKERIKLERELLLECVHRAA 280 (374)
T ss_pred HHhCCCCCcEEEEEeCC--EEEEEEeccccccccCCCEEEEEEEeeecCCChHHhCCC-CCCeEEEEEHHHHHHHHHHHH
Confidence 88887667789988655 566666211 001 12378899999999998 5674 788999999999999999998
Q ss_pred ccC----CEEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEE
Q 024527 153 SIG----DTVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVT 226 (266)
Q Consensus 153 ~~~----d~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~ 226 (266)
.++ ..|.+.++++.+.+++.. |.|++.+++ .++. +++.++.||.+||.+++++++ +++|+
T Consensus 281 ~~~~~~~~~v~l~~~~~~l~i~~~~~e~G~~~e~i-------------~~~~~G~~~~i~fN~~yl~d~l~~~~-~~~v~ 346 (374)
T PRK14943 281 LVSSDKSNSVKLKFSENLLEIASSSEGVGEAHESM-------------AITYSGPELQVAFNPDFFMAPLKALT-KDEVF 346 (374)
T ss_pred hhcccCCceEEEEEECCEEEEEEcCCCCceEEEEE-------------EEEecCCcEEEEECHHHHHHHHhcCC-CCEEE
Confidence 885 258899999999998875 889888877 2444 678999999999999999997 89999
Q ss_pred EEecCC-CcEEEEEEeCCcEEEEEEEcc-cC
Q 024527 227 ISLSSE-LPVVVEYKIAEMGYIRFYLAP-KI 255 (266)
Q Consensus 227 l~~~~~-~Pl~l~~~i~~~g~~~~~iaP-r~ 255 (266)
+++..+ .|+.++. ++ .+.|+|+| |+
T Consensus 347 l~~~~~~~p~~i~~---~~-~~~~limP~r~ 373 (374)
T PRK14943 347 FELKDEMSPGVFKT---LD-EFLCVIMPMRL 373 (374)
T ss_pred EEECCCCCCEEEec---CC-CeEEEEEeeec
Confidence 999986 5998874 33 45799999 43
No 27
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage.; GO: 0006281 DNA repair; PDB: 3GGR_A 3G65_A 3A1J_A.
Probab=99.83 E-value=4.2e-18 Score=147.07 Aligned_cols=236 Identities=15% Similarity=0.268 Sum_probs=171.5
Q ss_pred HHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCccee--eeC--CcEEEEEEhhhHHHHhcccC----
Q 024527 12 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY--RCD--RNISMGMNLNNVSKMLKCAG---- 83 (266)
Q Consensus 12 ~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y--~~~--~~~~~gi~l~~L~~ilk~~~---- 83 (266)
|.+++.+++++-+++.++++++||.++|++++|.|+..+.+.+.+|++| ..+ ......++++.+..++|+..
T Consensus 1 f~ral~~Lskigeel~ie~~~~~L~l~avNss~Sa~~~~~F~~~FF~~y~~~~~~~~~~~~~i~~K~~l~vfr~~~~~~~ 80 (252)
T PF04139_consen 1 FARALQCLSKIGEELYIEITEDGLSLRAVNSSRSAYAQFRFSKSFFDKYQADSDSQDSFSCKISMKSLLSVFRSLSTLEK 80 (252)
T ss_dssp HHHHHHHHHTT-SEEEEEEETTEEEEEEE-TTSSEEEEEEETGGGSSEEE--SSSS----EEEEHHHHHHHHSSCTCCHH
T ss_pred CHHHHHHHHhhCCeEEEEEcCCeEEEEEECccccEEEEEEEChHHhhhhcccCCCCCcEEEEEEchhhhhhhcccccccc
Confidence 6789999999999999999999999999999999999999999999999 222 35678999999999999765
Q ss_pred CCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEEEEe
Q 024527 84 NDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISVT 163 (266)
Q Consensus 84 ~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i~~~ 163 (266)
+-+.+.|.++...+.|.+++.+. .|.+++|.++..+.+..........+++.++++++.|++++..+..--+.|++.++
T Consensus 81 ~Ve~c~i~i~~~~~~L~~~l~c~-~gI~Kt~~l~~~~~~~~~a~~d~~~~~n~l~~~~~~l~~~l~~f~~~~eeitl~~~ 159 (252)
T PF04139_consen 81 NVESCEISIDNDESRLIFQLFCK-NGIIKTYNLPYEECESLQAVFDKESCPNYLVISPRLLKDLLDHFPSSTEEITLEVT 159 (252)
T ss_dssp CEEEEEEEE-TTSSEEEEEEEEG-GGEEEEEEEE-CE---------GGGSSEEEEEEHHHHHHHHTTS-TT--EEEEEEE
T ss_pred ceeEEEEEEcCCCcEEEEEEEec-cceEEEEEEEEEeccccccccchhcCCceEEEChHHHHHHHhhcCCChhhEEEEec
Confidence 34678999977778999999876 58999999999988876544444467899999999999999999887789999999
Q ss_pred CCeEEEEEEecc-----eeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCC-CCceEEEEecCCC-cEE
Q 024527 164 KEGVKFSTRGDI-----GTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATP-LSNTVTISLSSEL-PVV 236 (266)
Q Consensus 164 ~~~l~~s~~gd~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~-ls~~v~l~~~~~~-Pl~ 236 (266)
++++.+++-.+. .....++.. +.++.....+.++..++|++|-++.++..+. ++..+.++|+.++ |+.
T Consensus 160 ~~~v~~~s~~~~~~~~~~~l~t~v~i-----~~~ef~~~~~~~~~~itF~lKefka~l~~ae~~~~~i~~~f~~pG~Pi~ 234 (252)
T PF04139_consen 160 DDKVSFKSYTEEIQDSKQPLSTEVTI-----STEEFDEYNVQEDTDITFSLKEFKAILSFAESLSLPISIYFDNPGRPIL 234 (252)
T ss_dssp CTCEEEEEE-----SSS---EEEEEE------GGGSSEEE--TT-EEEEEHHHHHHHHHHHHHTTEEEEEEESSTTS-EE
T ss_pred CCEEEEEeecccccccccceEEEEEE-----ehHhcceEEcCCCCEEEEEeHHHHHHHHHHHhcCCcEEEEECCCCCcEE
Confidence 999999886421 122233321 2244445777788999999999999987653 3679999999875 999
Q ss_pred EEEEeCCcEEEEEEEcc
Q 024527 237 VEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 237 l~~~i~~~g~~~~~iaP 253 (266)
+++.=.+.-.++|.+|-
T Consensus 235 ~~~~~~~~~~~~~vlaT 251 (252)
T PF04139_consen 235 FELEQNDHFEAEFVLAT 251 (252)
T ss_dssp EEEE--SSEEEEEEE--
T ss_pred EEECCCCcEEEEEEEEc
Confidence 99873245688888873
No 28
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.4e-20 Score=168.84 Aligned_cols=251 Identities=25% Similarity=0.328 Sum_probs=197.1
Q ss_pred EEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCc-EEEEEEhhhHHHHhccc
Q 024527 4 LRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN-ISMGMNLNNVSKMLKCA 82 (266)
Q Consensus 4 a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~-~~~gi~l~~L~~ilk~~ 82 (266)
+....+..+|.+++.++++.+++.+.++.+|+...++|+.|+++....+|++.|.+|.++++ ..++++.+.|.++++++
T Consensus 63 ~~g~~~v~~k~l~dii~~L~de~~~~~~~~~~~~~~i~~~~s~f~l~~lp~e~Fp~~~~~~~~~~~~l~~~~Lk~ii~~~ 142 (364)
T COG0592 63 AEGEVAVPAKKLLDIISKLPDEAVFLVTEDGISLLAVDSGKSAFVLLTLPAEDFPEYPVDEEEVEFGLPTELLKKIIKRT 142 (364)
T ss_pred cceeEEEEhHHHHHHHHhCCCCceEEEEecCCceEEEecCceEEEcCCCCHHHCCCCCCCCcCceEEecHHHHHHHHhhe
Confidence 34445678999999999999999999999999999999999999999999999999999986 46899999999999999
Q ss_pred CCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHH---HHhh----ccC
Q 024527 83 GNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARIC---KDLA----SIG 155 (266)
Q Consensus 83 ~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i---~~~~----~~~ 155 (266)
...+.. .+.+..-+.+.+.+++. ..+.+.+........++++|+.++++.+++|++.|++++ ++.+ ..+
T Consensus 143 ~fa~~~-~e~~~~lngv~~~i~~~---~l~~vatd~~rla~~~~~~~~~~~~~~viIp~k~l~el~k~~~d~~~~~~~~s 218 (364)
T COG0592 143 KFADSL-LETRYELNGVLLEIEGT---KLRLVATDGHRLAVEELEIPELEEDASVIIPAKTLKELIKLLKDADVEIFLVS 218 (364)
T ss_pred eecccc-hhhhhhcccEEEEEECC---EEEEEEECCceEEEEEeccccCCCCccEEEEhhHHHHHHHhCCCCCeEEEEcC
Confidence 877766 66655555788887765 466777777776666677887788899999999999999 6666 566
Q ss_pred CEEEEEEeCCeEEEEE--EecceeEEEEEeecccCCCC-CCceEE---EecCcEEEEEehHHHHhccccCCCCc-eEEEE
Q 024527 156 DTVVISVTKEGVKFST--RGDIGTANIVLRQNTTVDKP-EEATII---EMHEPVSLTFALRYMNSFTRATPLSN-TVTIS 228 (266)
Q Consensus 156 d~v~i~~~~~~l~~s~--~gd~g~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~f~~~yL~~~~k~~~ls~-~v~l~ 228 (266)
+.+.+.+++ ...++. +|+.......+. +. +..+.+ ++.+.++-.|.+.|++...+...+++ .+++.
T Consensus 219 d~i~f~~~~-~~~~s~lieG~fpd~~~vip------~~~~~~~~l~~~el~~al~r~~~l~~~~~~~~~~~~~~~~v~i~ 291 (364)
T COG0592 219 DQIRFKAGE-TILFSKLIEGEFPDYERVIP------KEFEKELTLDRLELKEALKRVYSLSYLKDRGKKLSLADGEVKLS 291 (364)
T ss_pred CeEEEEECC-EEEEEEEecccCCChhhcCC------CCCceEEEEeHHHHHHHHHHHHHHHhcccCceEEEeeCCeEEEE
Confidence 677777666 333333 344344333331 11 111122 23456888999999999999988888 99999
Q ss_pred ecCCCcEEEEEEeCC-----cEEEEEEEcccCCCCcccCCCC
Q 024527 229 LSSELPVVVEYKIAE-----MGYIRFYLAPKIEEDEDETKPQ 265 (266)
Q Consensus 229 ~~~~~Pl~l~~~i~~-----~g~~~~~iaPr~~~~~~~~~~~ 265 (266)
++++.|+.+++.+.. .+++.|++||+++....-++++
T Consensus 292 ~~~~~~g~~~eei~~~~~g~~~~I~fn~~ylld~l~~~~~~~ 333 (364)
T COG0592 292 LGNDEPGKAEEEIDVGYTGEELKIGFNLAYLLDVLKALDSEE 333 (364)
T ss_pred ecCCCccceEEEEEeccCCceEEEEECHHHHHHHHhcCCCCe
Confidence 999999999998754 4899999999999777666654
No 29
>KOG3194 consensus Checkpoint 9-1-1 complex, RAD1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.80 E-value=6.4e-19 Score=145.86 Aligned_cols=242 Identities=15% Similarity=0.277 Sum_probs=196.1
Q ss_pred eeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCc-EE----EEEEhhhHH
Q 024527 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN-IS----MGMNLNNVS 76 (266)
Q Consensus 2 f~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~-~~----~gi~l~~L~ 76 (266)
+.+...+...+..++.++. .-+.+.+.++.+|+.++. +++++..+.+++.++.|.+|.+.++ +. .++..+.|.
T Consensus 14 ~~~~~env~tl~~~lkav~-~kd~~t~ha~~dg~kftv-en~~~~~a~~fi~~~~f~sfkvreesv~~~~~~~is~~sl~ 91 (279)
T KOG3194|consen 14 STVHLENVTTLLSCLKAVG-FKDDVTIHADADGLKFTV-ENNHVIKAQLFISRELFMSFKVREESVDHMKLMVISNSSLD 91 (279)
T ss_pred eeehhhhHHhHHHHHhhhc-cccceEEEEecCCcEEEE-EcCeEeeehhhccHHHhcchhhhhhhhhhhhhheeehhhhh
Confidence 3456667777777777777 789999999999999996 5699999999999999999998764 44 566666666
Q ss_pred HHhcccCCC--ceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCC-CCCCCcceeeEEEEEehHHHHHHHHHhhc
Q 024527 77 KMLKCAGND--DIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSE-HLGIPEAEYHAIVRMPSAEFARICKDLAS 153 (266)
Q Consensus 77 ~ilk~~~~~--d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~-~~~ip~~~~~~~i~~~s~~~~~~i~~~~~ 153 (266)
......-.+ -.++++|++-+.++...++.. |.+..+..-..+.... ++.....+.-+++.+.+..|.+|+++++.
T Consensus 92 ~~~s~~m~~~~~~~kvsY~G~g~P~i~~vEd~--G~vt~c~~~tte~~kd~D~n~~~t~v~~kiilKse~L~eAlkeLD~ 169 (279)
T KOG3194|consen 92 SFSSMIMSDDLVECKVSYDGHGSPFILIVEDA--GVVTECVELTTELEKDLDFNFLETNVIFKIILKSEGLHEALKELDM 169 (279)
T ss_pred hhhccccCCCceEEEEEecCCCCceEEEEecc--ceEEEeeecchhhhhccCccccchhhHHHHHHhhHHHHHHHHHhhh
Confidence 666543333 468899988888998888876 6676776666655442 44444445667889999999999999999
Q ss_pred cCCEEEEEEeCC--eEEEEEEecceeEEEEEeecccCCCCCCceE-EEecCcEEEEEehHHHHhccccCCCCceEEEEec
Q 024527 154 IGDTVVISVTKE--GVKFSTRGDIGTANIVLRQNTTVDKPEEATI-IEMHEPVSLTFALRYMNSFTRATPLSNTVTISLS 230 (266)
Q Consensus 154 ~~d~v~i~~~~~--~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~ 230 (266)
.++.+.|+.+++ .+.+++.|+.|.+++.++ +.+..++ +++.+++...|....+.+++||..++.+|.+++.
T Consensus 170 tsevl~It~s~dk~~F~L~tfG~lG~S~i~~P------s~s~~mEs~~~~~ev~~sy~fSli~~~tkAl~lasKv~lR~D 243 (279)
T KOG3194|consen 170 TSEVLQITMSPDKPYFRLSTFGNLGSSHIDYP------SDSSLMESFQCFDEVIGSYDFSLIDKITKALKLASKVLLRMD 243 (279)
T ss_pred cceeEEEEecCCCcEEEEEEecccCcceecCC------CcHHHHHHhhhhhhhhceEeehhhHHHHHHHhhhheEEEEEc
Confidence 999999999866 999999999999999984 2222333 7777889999999999999999999999999999
Q ss_pred CCCcEEEEEEeCC-cE---EEEEEEcc
Q 024527 231 SELPVVVEYKIAE-MG---YIRFYLAP 253 (266)
Q Consensus 231 ~~~Pl~l~~~i~~-~g---~~~~~iaP 253 (266)
+++-|.+++.+.+ +| ++.|++.|
T Consensus 244 erGvLS~qimi~~~dg~itfiefc~vp 270 (279)
T KOG3194|consen 244 ERGVLSVQIMIQTDDGIITFIEFCMVP 270 (279)
T ss_pred CCcEEEEEEEEecCCceEEEEEEEEee
Confidence 9999999999754 44 88999999
No 30
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.2e-16 Score=141.98 Aligned_cols=213 Identities=18% Similarity=0.246 Sum_probs=178.5
Q ss_pred hhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
...|+++++. .+...+++.|++.++-++..|+|++|+++.+..++...+ +..+.|+.+.|.++.
T Consensus 132 ~~~Lk~ii~~~~fa~~~~e~~~~lngv~~~i~~~~l~~vatd~~rla~~~~~~~~~~~-------~~~viIp~k~l~el~ 204 (364)
T COG0592 132 TELLKKIIKRTKFADSLLETRYELNGVLLEIEGTKLRLVATDGHRLAVEELEIPELEE-------DASVIIPAKTLKELI 204 (364)
T ss_pred HHHHHHHHhheeecccchhhhhhcccEEEEEECCEEEEEEECCceEEEEEeccccCCC-------CccEEEEhhHHHHHH
Confidence 5667777765 566789999999999999999999999999999997653 267899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccCC-
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIGD- 156 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d- 156 (266)
|.+...+ +.+...++ ++.|..++. .+..+++|+++|++ .+| .++..++++...+|.++++++..++.
T Consensus 205 k~~~d~~-~~~~~~sd--~i~f~~~~~------~~~s~lieG~fpd~~~vip-~~~~~~~~l~~~el~~al~r~~~l~~~ 274 (364)
T COG0592 205 KLLKDAD-VEIFLVSD--QIRFKAGET------ILFSKLIEGEFPDYERVIP-KEFEKELTLDRLELKEALKRVYSLSYL 274 (364)
T ss_pred HhCCCCC-eEEEEcCC--eEEEEECCE------EEEEEEecccCCChhhcCC-CCCceEEEEeHHHHHHHHHHHHHHHhc
Confidence 8888777 77777544 888888764 89999999999987 667 59999999999999999999999974
Q ss_pred ---EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCC
Q 024527 157 ---TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSE 232 (266)
Q Consensus 157 ---~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~ 232 (266)
.+.+...++.+.+++.. +.|++..++.. -..+++.++.|+..|+.+.+++.+ +++|.+.|++.
T Consensus 275 ~~~~~~~~~~~~~v~i~~~~~~~g~~~eei~~------------~~~g~~~~I~fn~~ylld~l~~~~-~~~v~~~~~~~ 341 (364)
T COG0592 275 KDRGKKLSLADGEVKLSLGNDEPGKAEEEIDV------------GYTGEELKIGFNLAYLLDVLKALD-SEEVQFGFNDS 341 (364)
T ss_pred ccCceEEEeeCCeEEEEecCCCccceEEEEEe------------ccCCceEEEEECHHHHHHHHhcCC-CCeEEEEEcCC
Confidence 45566666899998875 67888888731 111688999999999999999998 99999999986
Q ss_pred -CcEEEEEEeCCcEEEEEEEcc
Q 024527 233 -LPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 233 -~Pl~l~~~i~~~g~~~~~iaP 253 (266)
.|+.++.. ++..+.|+|+|
T Consensus 342 ~~p~~i~~~--~~~~~~~~imP 361 (364)
T COG0592 342 SSPFLIRPE--ENDDFKYLIMP 361 (364)
T ss_pred CCcEEEEeC--CCCCceEEEEE
Confidence 49999873 44578899999
No 31
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.58 E-value=6.6e-13 Score=111.09 Aligned_cols=251 Identities=12% Similarity=0.150 Sum_probs=182.6
Q ss_pred eeEEEcC---hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECC--CCeEEEEEEecC-CCcceeeeCC------cEEEE
Q 024527 2 LELRLVQ---GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDS--SHVALVALLLRS-EGFEHYRCDR------NISMG 69 (266)
Q Consensus 2 f~a~~~~---~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~--~r~a~v~~~l~~-~~F~~y~~~~------~~~~g 69 (266)
|+|.+.+ -..|++++.++.++-+.|+++++++.+.|...|. ++..++|..+.+ .+|++|+++. ++.++
T Consensus 3 Fka~l~d~~~l~~f~ril~al~Kl~K~C~l~l~~e~lnFI~c~~~~~~~~~~ws~~~~e~iF~dy~m~s~~p~~e~I~L~ 82 (284)
T KOG3999|consen 3 FKALLQDNAVLLLFTRILPALDKLGKNCHLRLTKEHLNFIHCDLLDGGSVQVWSQLEKEVIFDDYRMESQNPNNEEINLE 82 (284)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhhhceEEEecccceEEEEecccCCCceEEEEeeehhhcchhheeeccCCCcceEEEE
Confidence 7788888 5689999999999999999999999999987554 467778888885 4899999864 58999
Q ss_pred EEhhhHHHHhcccCC-CceEEEEEcC-CCCeEEEEEe--CCC--CCeEEEEEEeeee--cCCC-CCCCCcc-eeeEEEEE
Q 024527 70 MNLNNVSKMLKCAGN-DDIITLKADD-GSDTVTFMFE--SPT--QDKIADFEMKLMD--IDSE-HLGIPEA-EYHAIVRM 139 (266)
Q Consensus 70 i~l~~L~~ilk~~~~-~d~l~l~~~~-~~~~l~i~~~--~~~--~~~~~~~~l~li~--~~~~-~~~ip~~-~~~~~i~~ 139 (266)
++...|.++||.+.. ...+++.+.+ ..+++....+ +.. ..+...+.+|+-- ..+- +|..|.. +-+..+-|
T Consensus 83 v~~~nl~rAlrs~~~g~~~lklKLskk~~p~~t~~~~~lt~~a~~s~iVtHdIPItii~~s~w~~~~~P~vp~~dl~I~l 162 (284)
T KOG3999|consen 83 VDSANLYRALRSLVGGANRLKLKLSKKQFPCLTVSVEVLTFEAKGSRIVTHDIPITIISRSYWSEYQEPLVPAPDLSIQL 162 (284)
T ss_pred ecHHHHHHHHHHhcCcccceEEEehhccCCCceeeeeeeccccccCceeEecCCeEEecHHHhhhhcCcCCCCCCcceeC
Confidence 999999999999876 4567777743 2334433222 111 2344566666532 2221 4444432 45566899
Q ss_pred eh-HHHHHHHHHhhccCCEEEEEEe-CCeEEEEEEecceeEEEEEeecccCCCCCCce-EEE-ecCcEEEEEehHHHHhc
Q 024527 140 PS-AEFARICKDLASIGDTVVISVT-KEGVKFSTRGDIGTANIVLRQNTTVDKPEEAT-IIE-MHEPVSLTFALRYMNSF 215 (266)
Q Consensus 140 ~s-~~~~~~i~~~~~~~d~v~i~~~-~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~f~~~yL~~~ 215 (266)
|. +.++..++.+..+|+.+.++++ +|.+.++++.+.+...+.|....+..-.++.. ... .++.++...+.+-+..+
T Consensus 163 P~l~~lk~~vdk~Knis~~l~~tan~~GeLqv~v~~e~~~vtt~Fq~L~~~~~~s~s~~edr~~e~~a~~~ld~r~~~~~ 242 (284)
T KOG3999|consen 163 PDLNQLKSFVDKMKNISDVLNVTANKSGELQVSVSIELIRVTTEFQDLSNPPLKSSSPVEDRSAEARAEVALDSRDASSF 242 (284)
T ss_pred CCHHHHHHHHHHhhcccceEEEEEecCceEEEEEEEeeEEEEEEhhhccCCCCCCcccccccChhhhhhheehhhhHHHH
Confidence 98 8999999999999999999998 78999999999999999997654433322222 222 25568899999999999
Q ss_pred cccCCCC-ceEEEEecCCCcEEEEEEeCCcEEEEEEEc
Q 024527 216 TRATPLS-NTVTISLSSELPVVVEYKIAEMGYIRFYLA 252 (266)
Q Consensus 216 ~k~~~ls-~~v~l~~~~~~Pl~l~~~i~~~g~~~~~ia 252 (266)
+++.+.. ....+.+..+.-..+.+--..+..++|+|.
T Consensus 243 ~~s~~~~~~~l~c~i~~~~~v~~~~~~~~dvvL~y~vp 280 (284)
T KOG3999|consen 243 FVSVQVFSTSLQCNITKNDSVHYGIAPQEDVVLQYIVP 280 (284)
T ss_pred HHHhhcCcceeEEeeccCceEEEeeccCccEEEEEEec
Confidence 9988875 466666666555433332224678888875
No 32
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D 2POL_A ....
Probab=99.52 E-value=4.3e-13 Score=102.92 Aligned_cols=109 Identities=23% Similarity=0.444 Sum_probs=90.4
Q ss_pred CCcceeeEEEEEehHHHHHHHHHhhccCC----EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cC
Q 024527 128 IPEAEYHAIVRMPSAEFARICKDLASIGD----TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HE 201 (266)
Q Consensus 128 ip~~~~~~~i~~~s~~~~~~i~~~~~~~d----~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~ 201 (266)
+|. ++..+++++..+|.++++|+..+++ .|.+.++++++.+++.+ |.|++.+++. +.. ++
T Consensus 4 iP~-~~~~~i~i~r~~L~~al~Rv~~~~~~~~~~v~l~~~~~~l~l~~~~~~~g~~~e~i~-------------~~~~g~ 69 (121)
T PF02768_consen 4 IPT-EFETSITIDRKELLDALKRVSIISSEKNNPVKLSFSDNQLTLSSQSSEIGEAEEEIP-------------IEYEGE 69 (121)
T ss_dssp S-S-SESEEEEEEHHHHHHHHHHHHHHHTTTTGEEEEEEETTEEEEEEEETTTEEEEEEEE--------------EEEES
T ss_pred CCC-CCCEEEEEEHHHHHHHHHHHHHHhhcCCceEEEEEECCEEEEEEcCCCCceEEEEEe-------------eeecCC
Confidence 674 8999999999999999999999874 79999999999999985 8899988873 333 78
Q ss_pred cEEEEEehHHHHhccccCCCCceEEEEecCCC-cEEEEEEeCCcEEEEEEEcc
Q 024527 202 PVSLTFALRYMNSFTRATPLSNTVTISLSSEL-PVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 202 ~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~-Pl~l~~~i~~~g~~~~~iaP 253 (266)
+.++.||.+||.+++++++ +++|.+++.++. |+.++.. ++....|+|+|
T Consensus 70 ~~~i~fN~~yL~d~L~~~~-~~~V~l~~~~~~~p~~i~~~--~d~~~~~liMP 119 (121)
T PF02768_consen 70 PLEIAFNPKYLLDALKAID-GEEVTLEFSDPSSPILITPE--EDPDFKYLIMP 119 (121)
T ss_dssp -EEEEEEHHHHHHHHHCC--SSEEEEEESSTTS-EEEEET--TSSCEEEEE--
T ss_pred ceEEEECHHHHHHHHhhcC-CCEEEEEEcCCCCCEEEEeC--CCCceEEEEEe
Confidence 9999999999999999998 899999999875 9998863 45678899999
No 33
>cd00140 beta_clamp Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds.
Probab=99.51 E-value=1.4e-11 Score=111.53 Aligned_cols=193 Identities=14% Similarity=0.208 Sum_probs=148.9
Q ss_pred hhhHHHHHHHH---------HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEAI---------KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~l---------~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
+..|+.+++.+ ++++.++.|++.++++++.|+|++|.+...+.... +.++-.+.|+.+.|.+++
T Consensus 7 ~~~l~~~i~~~~~~~~~~~~~p~L~gvl~e~~~~~l~~~atd~~~~~~~~~~~~~-------~~~~g~~~vp~k~l~~i~ 79 (365)
T cd00140 7 REALLEALQKVSRAIESRNTIPILSNVLIEASDGGLTLTATDLEISIKTTIPAEE-------VEEEGSVTVPAKKLLDIV 79 (365)
T ss_pred HHHHHHHHHHHHhHhCCCCChhHhcCEEEEEECCEEEEEEecceEEEEEEEecee-------cccCeEEEEEhHHHHHHH
Confidence 55666666664 35678999999999999999999999987665432 234567899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeee-cCCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-CC-
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD-IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-GD- 156 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~-~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~d- 156 (266)
|.+.. +.+.+..++ +.+.|+.++. .|.+++++ .++|+++.. ++...+.++++.|.++++++... ++
T Consensus 80 k~l~~-~~v~i~~~~--~~l~i~~g~~------~~~~~~~~~~~fP~~~~~--~~~~~~~i~~~~l~~~l~~v~~~~~~~ 148 (365)
T cd00140 80 RKLPD-EEVTLETEE--NRLTIKSGKS------RFSLNTLPAEEFPELPEI--ENGSSFTIPASELKELIKKTAFAVSTD 148 (365)
T ss_pred HhCCC-CcEEEEEcC--CEEEEEECcE------EEEEcCCCHHHCCCCCCC--CCCcEEEECHHHHHHHHhhEEEEecCc
Confidence 99985 789999875 4788888765 89999999 488887654 66789999999999999999864 32
Q ss_pred -------EEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEE--ecCcEEEEEehHHHHhccccCC-CCceEE
Q 024527 157 -------TVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIE--MHEPVSLTFALRYMNSFTRATP-LSNTVT 226 (266)
Q Consensus 157 -------~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~yL~~~~k~~~-ls~~v~ 226 (266)
.|.|.++++.+.+.+..-...+...+. +. .+++.++.++.+||.+++|..+ -++.|+
T Consensus 149 ~~~~~l~gI~~~~~~~~l~l~atD~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~l~~l~k~l~~~~~~v~ 215 (365)
T cd00140 149 ETRPILNGVLLEIEDNKLRAVATDGHRLALREIE-------------LESGAEEDFNVIVPRKTLNELLKLLEDDDEEVE 215 (365)
T ss_pred cCcccceEEEEEEECCEEEEEEEcCceEEEEEee-------------cCCCCccCceEEEechHHHHHHHhccCCCCcEE
Confidence 478888899999987631122222221 11 2456788999999999999886 367899
Q ss_pred EEecCC
Q 024527 227 ISLSSE 232 (266)
Q Consensus 227 l~~~~~ 232 (266)
+.+.++
T Consensus 216 i~~~~~ 221 (365)
T cd00140 216 ISISEN 221 (365)
T ss_pred EEEeCC
Confidence 998775
No 34
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=99.11 E-value=1.4e-09 Score=82.79 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=83.5
Q ss_pred hhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
+..|+++++. .++.+++++|++.+++|+++|+|++|+|+....+..... .+..+.|+.+.+..+.
T Consensus 4 ~~~l~~~i~~v~fa~s~d~~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~------~~~~~iIp~k~l~~l~ 77 (116)
T PF02767_consen 4 AKELKEAIKKVAFAASKDESRPILNGVLFEIENNKLRLVATDGHRLAVREIELDEENE------DEFSFIIPAKALKELK 77 (116)
T ss_dssp HHHHHHHHHHHGGGS-SSTTSGGGGEEEEEEETTEEEEEEEESSEEEEEEEEEEEECE------SEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHhheeEEEecCCCCceeeeEEEEEECCEEEEEEeCCceEEEEEEecCcccc------cceEEEEechHHHHHh
Confidence 5677777766 457899999999999999999999999999998886542 1478999999999999
Q ss_pred cccCC-CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCC
Q 024527 80 KCAGN-DDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEH 125 (266)
Q Consensus 80 k~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~ 125 (266)
|.+.. ++.++|.++++ ++.|..++. .+..+++++++|+
T Consensus 78 k~l~~~~~~v~i~~~~~--~i~f~~~~~------~~~srli~g~yPd 116 (116)
T PF02767_consen 78 KLLSDEDEEVEISISDN--QIIFKFDNI------EITSRLIDGEYPD 116 (116)
T ss_dssp HHSSTTSSEEEEEEESS--EEEEEESSE------EEEEE-BSS----
T ss_pred hhcccCCceEEEEEcCC--EEEEEECCE------EEEEEEecccCCC
Confidence 98876 67899999855 899998876 8999999999874
No 35
>TIGR00663 dnan DNA polymerase III, beta subunit. University).
Probab=99.10 E-value=3.4e-08 Score=89.82 Aligned_cols=199 Identities=14% Similarity=0.176 Sum_probs=138.7
Q ss_pred hhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
...|.++++. ..+++.++.|++.+++++++|+|.++.+...+. +.+ +.++-.+.|+.+.|.+++
T Consensus 7 ~~~L~~~l~~v~~~i~~~~~~piL~gvlle~~~~~l~l~atD~~~~~~~~~~-~~~------~~~~g~~~vp~k~l~ei~ 79 (367)
T TIGR00663 7 RDDLLKELSKVQRVLSNRPTIPILSNILLEVKDDKLTITATDLDISLESQIF-TIN------SEQEGSVTINAKKFLDIV 79 (367)
T ss_pred HHHHHHHHHHHHhHhcCCCchhhhcCEEEEEECCEEEEEEECCceEEEEEEe-ccc------cccCeEEEEEhHHHHHHH
Confidence 5556666555 345788999999999999999999999877654 111 233456899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhccC--C
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASIG--D 156 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~--d 156 (266)
|.+. ++.+.+..+++ ++.|..+.. .|.+++++. ++|+++.+ .....+.++++.|++++++..... +
T Consensus 80 k~l~-~~~i~i~~~~~--~l~i~~~~~------~~~~~~l~~~~fP~~~~~--~~~~~~~i~~~~l~~~i~~v~~a~~~~ 148 (367)
T TIGR00663 80 RALP-DSKITLEVKND--KLAITSEKS------RFKLPTLSAEEFPNLPTI--EEGVSIEIPSDVLKEAINQTAFAAGED 148 (367)
T ss_pred HhCC-CCceEEEEcCC--EEEEEECcE------EEEecCCCHHHCCCCCCc--CCCcEEEECHHHHHHHHhhEEEEEecC
Confidence 9987 46788888654 688877554 799999985 88887554 335688999999999999987753 2
Q ss_pred -------EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEE
Q 024527 157 -------TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTIS 228 (266)
Q Consensus 157 -------~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~ 228 (266)
.|.|..+++.+.+.+.. .. =+...+.. .....++.+...+.++|..+.|..+-.+.+.+.
T Consensus 149 ~~r~~L~gi~~~~~~~~l~~~atDg~R-La~~~~~~-----------~~~~~~~~~~iiP~k~l~el~~~l~~~~~~~~~ 216 (367)
T TIGR00663 149 ETRPVLNGVLIEQKGKTLLLVATDGHR-LAVCKLKS-----------EVSDEEDFSVIIPAKALNELLKLLSENGSVVLK 216 (367)
T ss_pred CCCcccceEEEEEeCCEEEEEEecchh-eEEEeccc-----------cCCCCccceEEEecHHHHHHHHHhcCCCCeEEE
Confidence 47888889999887763 31 11111100 001123467789999999999987633344443
Q ss_pred ecCCCcEEE
Q 024527 229 LSSELPVVV 237 (266)
Q Consensus 229 ~~~~~Pl~l 237 (266)
..++.-+.+
T Consensus 217 ~~~~~~~~~ 225 (367)
T TIGR00663 217 SLNDQLVYI 225 (367)
T ss_pred EEeCCEEEE
Confidence 333333433
No 36
>PRK14943 DNA polymerase III subunit beta; Provisional
Probab=99.01 E-value=1.3e-07 Score=86.30 Aligned_cols=199 Identities=8% Similarity=0.112 Sum_probs=134.3
Q ss_pred hhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
...|.++++. ..+++.++.|++.+++|+++|+|.++.+...+ +. .++++-.+.|+.+.|.+++
T Consensus 7 ~~~L~~~l~~v~~~v~~~~~~piL~gill~~~~~~l~l~aTD~~~~~~~~~--~~------~~~~~g~~~vpak~l~ei~ 78 (374)
T PRK14943 7 KDHFLNGLRQVLNVVSSKTTMPILSNVLIEAENGQISLTTTNLDLGIRCVI--KA------NVLREGTVTLPVKKLATIV 78 (374)
T ss_pred HHHHHHHHHHHHhHhCCCCChHHhcCEEEEEECCEEEEEEECccEEEEEEE--Ee------eeccCeEEEEEhHHHHHHH
Confidence 4555555555 35678999999999999999999865444433 32 1334567899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeee-cCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccC--C
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD-IDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIG--D 156 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~-~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~--d 156 (266)
|.+.+ +.+.+..++ ++++.|..++. .|.++.++ .++|+ +|..++...+.++.+.|.+++++..... +
T Consensus 79 k~l~~-~~i~i~~~~-~~~~~i~~~~~------~~~l~~l~~~~fP~--~p~~~~~~~~~i~~~~l~~~i~~v~~a~s~~ 148 (374)
T PRK14943 79 RELPE-AEVQVDANQ-NNQAKVESGGS------QFKIMGIPAEEFPP--LPSFEQATVFQLEQSELRDMLKSVEYAQSTD 148 (374)
T ss_pred HhCCC-CceEEEEcC-CCeEEEEECCE------EEEEccCCHHHCCC--CCCCCCCcEEEECHHHHHHHHhhEeEEeccC
Confidence 99874 478887753 23787776654 78877665 67776 4544677889999999999999998643 1
Q ss_pred -------EEEEEEeCCeEEEEEE-ecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEE
Q 024527 157 -------TVVISVTKEGVKFSTR-GDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTIS 228 (266)
Q Consensus 157 -------~v~i~~~~~~l~~s~~-gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~ 228 (266)
.|.|..+++.+++.+. |.... ...... ...+..+.+.....+.|..+.|.++-.++|.+.
T Consensus 149 ~~~~~L~gv~l~~~~~~l~l~aTDg~rla-~~~~~~-----------~~~~~~~~~~ivp~k~l~~l~~~l~~~~~V~i~ 216 (374)
T PRK14943 149 ETRYILNGVYFNFRDGKLTLVATDGRRLA-LAETEL-----------EFPEDQAGDAILPAKTVGELRRLLDKGGKLKIR 216 (374)
T ss_pred cCCcceEEEEEEEeCCEEEEEEecchhEE-EEEecc-----------CCCCCcCceEEEehhHHHHHHHhCCCCCcEEEE
Confidence 4788888999998876 33221 111110 011122234456666666666665535689999
Q ss_pred ecCCC-cEEE
Q 024527 229 LSSEL-PVVV 237 (266)
Q Consensus 229 ~~~~~-Pl~l 237 (266)
++++. ++.+
T Consensus 217 ~~~~~~~f~~ 226 (374)
T PRK14943 217 FNDRQAAFEI 226 (374)
T ss_pred EeCCEEEEEE
Confidence 98764 5544
No 37
>PRK05643 DNA polymerase III subunit beta; Validated
Probab=98.98 E-value=7.3e-07 Score=81.07 Aligned_cols=196 Identities=14% Similarity=0.152 Sum_probs=139.2
Q ss_pred hhhHHHHHHHH---------HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEAI---------KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~l---------~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
.+.|.++++.+ .+++.++.+++.++++++.|+|..+.+...+...-. + ++-.+.|+.+.|.+++
T Consensus 7 ~~~l~~~l~~~~~~i~~~~~~piL~~ili~~~~~~l~l~atd~~~~~~~~~~~~~~----~---~~G~~~v~~k~l~eii 79 (367)
T PRK05643 7 RNALLKALQLVQGAVERRNTIPILSNVLIEAEGGKLSLTATDLEISIETTIPAEVE----V---EEGSITVPAKKLLDIV 79 (367)
T ss_pred HHHHHHHHHHHhhhcCCCCChhHhcCEEEEEeCCEEEEEEECcceEEEEEEEeeEc----c---cCeEEEEEhHHHHHHH
Confidence 45566666553 456889999999999999999988777665543311 1 3456899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D 156 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d 156 (266)
|.+.+++.+.++..++ +.+.|..+.. .|.++++++ ++|+++.+ +....+.+++..|.++++...-. + +
T Consensus 80 k~l~~~~~i~i~~~~~-~~l~i~~~~~------~~~l~~~~~~~fP~~~~~--~~~~~~~i~~~~l~~~i~~v~~a~~~~ 150 (367)
T PRK05643 80 RKLPDGAEITLELEEN-NRLTIKSGKS------RFNLPTLPAEDFPNLPEI--EEEVSFTLPQKTLKRLIEKTQFAMSTQ 150 (367)
T ss_pred HcCCCCCcEEEEECCC-CEEEEEECCE------EEEeccCCHHHCCCCCCC--CCCcEEEECHHHHHHHHhheeEEeecC
Confidence 9998655899988543 3787776554 899999987 66765443 55578899999999999998753 2 2
Q ss_pred -------EEEEEEeCCeEEEEEE-ecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEE
Q 024527 157 -------TVVISVTKEGVKFSTR-GDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTIS 228 (266)
Q Consensus 157 -------~v~i~~~~~~l~~s~~-gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~ 228 (266)
.|.|.++++.+++.+. |... +...+.. + ....++.+.....+.|..+.|..+-.+.|.+.
T Consensus 151 ~~~piL~gi~~~~~~~~l~l~aTD~~rl-~~~~~~~----~-------~~~~~~~~~~vp~k~l~ei~k~l~~~~~v~i~ 218 (367)
T PRK05643 151 ETRYYLNGVLLEIEGNELRAVATDGHRL-AVRKLEL----E-------EGSLGDFSVIIPRKTLLELQKLLDDEEPVEIF 218 (367)
T ss_pred CccccccEEEEEEeCCEEEEEEecccee-EEEEecc----c-------CCcccCceEEEchHHHHHHHHhcCCCCcEEEE
Confidence 4778888899988876 2321 1222210 0 00113466789999999999988633468888
Q ss_pred ecCC
Q 024527 229 LSSE 232 (266)
Q Consensus 229 ~~~~ 232 (266)
+.++
T Consensus 219 ~~~~ 222 (367)
T PRK05643 219 ISDN 222 (367)
T ss_pred EeCC
Confidence 8765
No 38
>PRK14945 DNA polymerase III subunit beta; Provisional
Probab=98.84 E-value=4.1e-06 Score=76.16 Aligned_cols=180 Identities=13% Similarity=0.161 Sum_probs=128.8
Q ss_pred HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCCeE
Q 024527 20 KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTV 99 (266)
Q Consensus 20 ~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~l 99 (266)
.+++.++.+++.++++.++|+|..-.. ...++.+ +.++-.+.|+.+.|.+++|.+.+ +.+.++.+ ++.+
T Consensus 27 ~piL~~ili~a~~~~l~l~atd~~~~i--~~~i~~~------i~~~G~~~v~ak~l~~ivk~lp~-~~i~~~~~--~~~l 95 (362)
T PRK14945 27 NPLLTYLKVELSEGGLTLSGTNGEVDL--EVTLPAE------VQGPGRVVVPAHLFFQIVRNLPG-ELVELEFQ--GGEL 95 (362)
T ss_pred hhhhcCEEEEEeCCEEEEEEECCcEEE--EEEEeee------eccCeEEEEEccCHHHHHHhCCC-CcEEEEEc--CCEE
Confidence 346799999999999999999965333 3333432 34556789999999999999974 47888875 3378
Q ss_pred EEEEeCCCCCeEEEEEEeeeecC-CCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEeCCeEEE
Q 024527 100 TFMFESPTQDKIADFEMKLMDID-SEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVTKEGVKF 169 (266)
Q Consensus 100 ~i~~~~~~~~~~~~~~l~li~~~-~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~~~~l~~ 169 (266)
.|+.+.. +|.++.++++ +|.++.++.. .+.++.+.|+++++...-. + + .|.+.++++.+++
T Consensus 96 ~i~~~~~------~~~l~~~~~~~fP~~~~~~~~---~~~i~~~~L~~~i~~v~~avs~~~~~piL~gv~l~~~~~~l~l 166 (362)
T PRK14945 96 EVRSGSS------RTKLQTAPPEGYPELSFPSQG---DVRLSAGELAKALTHVRYAASNEEFQAIFRGVKLEHSPQGLRA 166 (362)
T ss_pred EEEECCE------EEEeccCChHHCCCCCCCCCc---eEEECHHHHHHHHhhEEEEEecccchhheeeEEEEEeCCEEEE
Confidence 8876544 8999999874 5766555422 3699999999999998764 2 2 5788888999998
Q ss_pred EEE-ecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCC
Q 024527 170 STR-GDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSEL 233 (266)
Q Consensus 170 s~~-gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~ 233 (266)
.|. |... +...+. ++..++.++..+.+.|.++.|.++-.+.|.+.+.++.
T Consensus 167 vATDg~rl-a~~~~~-------------~~~~~~~~~iip~k~l~el~k~l~~~~~v~i~~~~~~ 217 (362)
T PRK14945 167 VASDGYRL-AIYDLP-------------ASQGQGRKLVIPARSADELVRVLKDGDEASLALGEGV 217 (362)
T ss_pred EEEccceE-EEEEec-------------cCCCCCceEEEEHHHHHHHHHhcCCCCcEEEEEcCCE
Confidence 876 2321 111221 1123456788999999999998863347888887653
No 39
>smart00480 POL3Bc DNA polymerase III beta subunit.
Probab=98.83 E-value=2.8e-06 Score=76.71 Aligned_cols=181 Identities=13% Similarity=0.182 Sum_probs=130.5
Q ss_pred HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeC-CcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCC
Q 024527 19 IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCD-RNISMGMNLNNVSKMLKCAGNDDIITLKADDGSD 97 (266)
Q Consensus 19 l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~-~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~ 97 (266)
..+++.++.+++.+++|+++|+|........+... +. ++-++.|+.+.|.+++|.+.+ +.+.++.+++
T Consensus 10 ~~piL~~ill~a~~~~l~l~atd~e~~i~~~i~~~--------~~~~~G~~~v~a~~l~~ivk~lp~-~~i~~~~~~~-- 78 (345)
T smart00480 10 TIPILSNILLEAKDDGLTLTATDLEISIKSSISAE--------VEDEEGSVTVPAKKFLDIVRKLPD-KEITLSVEED-- 78 (345)
T ss_pred ChhHhcCEEEEEECCEEEEEEECCceEEEEEEEee--------EccCCeEEEEEhHHHHHHHHhCCC-CceEEEEcCC--
Confidence 45789999999999999999999775444444322 23 456789999999999999975 6788888654
Q ss_pred eEEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEeCCeE
Q 024527 98 TVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVTKEGV 167 (266)
Q Consensus 98 ~l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~~~~l 167 (266)
++.|+.+.. +|.++.++. ++|.++.+ +....+.+++..|+++++...-. + + .|.|.++++.+
T Consensus 79 ~l~i~~~~~------~~~l~~~~~~~fP~~~~~--~~~~~~~i~~~~L~~~i~~v~~a~s~~~~~piL~Gi~~~~~~~~l 150 (345)
T smart00480 79 KLVITSGKS------RFNLPTLDAEEFPELPFI--EEGVTFELPTKLLKEGIEKTAFAVSTDETRPVLNGVNLEISNGEL 150 (345)
T ss_pred EEEEEECcE------EEEecCCCHHHCCCCCCc--CCCcEEEECHHHHHHHHhhEEEEEecCCCcceeeEEEEEEECCEE
Confidence 677765443 799999986 56665443 44568899999999999998763 3 2 46788888999
Q ss_pred EEEEE-ecceeEEEEEeecccCCCCCCceEEEec-CcEEEEEehHHHHhccccCCC-CceEEEEecCC
Q 024527 168 KFSTR-GDIGTANIVLRQNTTVDKPEEATIIEMH-EPVSLTFALRYMNSFTRATPL-SNTVTISLSSE 232 (266)
Q Consensus 168 ~~s~~-gd~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~yL~~~~k~~~l-s~~v~l~~~~~ 232 (266)
.+.+. |... +...+. ++.. ++.++..+.++|.++.|.++- .+.|.+.++++
T Consensus 151 ~lvATDg~rl-a~~~~~-------------~~~~~~~~~~ivP~k~l~el~k~l~~~~~~v~i~~~~~ 204 (345)
T smart00480 151 RLVATDGHRL-AVREIK-------------LESEEDDFSVIIPRKSLLELNKLLTDNEELVEIFISSN 204 (345)
T ss_pred EEEEEcCceE-EEEEec-------------cCCCCCcceEEEehHHHHHHHHhccCCCCcEEEEEeCC
Confidence 88776 3321 111221 1111 236788999999999998863 35788888866
No 40
>PRK14941 DNA polymerase III subunit beta; Provisional
Probab=98.65 E-value=3.4e-05 Score=70.48 Aligned_cols=191 Identities=12% Similarity=0.174 Sum_probs=130.7
Q ss_pred HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcC----
Q 024527 19 IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADD---- 94 (266)
Q Consensus 19 l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~---- 94 (266)
..+++.++.|++.+++|.++|+|.. ++ +...++. .++++-.+.|+.+.|.+++|.+.+ +.+.++.++
T Consensus 26 ~~piL~~ill~a~~~~l~l~atD~e-~~-i~~~i~~------~~~~~G~~~v~a~~l~~ivk~lp~-~~i~~~~~~~~~~ 96 (374)
T PRK14941 26 IDPRFENIHLTLENGKLTLFATDGE-LS-ITAKTEV------ESSDSGNIGIRARTLQDFLRSMYD-TEVTFSIERQEIS 96 (374)
T ss_pred chhHhcCEEEEEECCEEEEEEECCC-eE-EEEEEee------eeccceEEEEEhHHHHHHHHcCCC-CcEEEEEeccccC
Confidence 3467999999999999999999965 33 3334443 245566789999999999999964 478888752
Q ss_pred CCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEeCC
Q 024527 95 GSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVTKE 165 (266)
Q Consensus 95 ~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~~~ 165 (266)
+++.+.|.-+.. +|.++.+..++|. +|..+....+.++++.|+++++...-. + + -|.+.++++
T Consensus 97 ~~~~l~I~~~~~------~f~l~~~~~~~p~--~~~~~~~~~~~i~~~~L~~~i~~v~~a~s~~~~rpiL~Gv~l~~~~~ 168 (374)
T PRK14941 97 DHGTVHIATDKG------RYKIPCLFESKPE--KQEKNFDISLDLETSELLDLIQKTIFACSVDGMRPAMMGVLFELEGN 168 (374)
T ss_pred CCCEEEEEECCE------EEEeeccCcccCC--CcCCCCceEEEECHHHHHHHHhheeEEEecccchhhhceEEEEEeCC
Confidence 344777765443 7999999766543 344456678999999999999998653 3 2 478888899
Q ss_pred eEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCC-CcEEEE
Q 024527 166 GVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSE-LPVVVE 238 (266)
Q Consensus 166 ~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~-~Pl~l~ 238 (266)
.+++.|..-.--+...... + ....++.++....+.|..+.|... .+.+.+.++.+ .-+.++
T Consensus 169 ~l~lvATDg~Rla~~~~~~-------~----~~~~~~~~~iiP~k~l~el~kll~-~~~v~i~~~~~~~~i~~~ 230 (374)
T PRK14941 169 TITAVSTDGHRLVRCRKNS-------S----VGVEEKQKIVVPARVLSILQKLAQ-HETVTMSIDSERRFVRFI 230 (374)
T ss_pred EEEEEEecCeeEEEEEecc-------c----CCccccceEEechHHHHHHHHhCC-CCceEEEEEcCCCEEEEE
Confidence 9999876211112222210 0 011234578899999987777654 44788888853 345444
No 41
>KOG2810 consensus Checkpoint 9-1-1 complex, RAD9 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.62 E-value=5.7e-08 Score=86.59 Aligned_cols=232 Identities=13% Similarity=0.140 Sum_probs=168.1
Q ss_pred EcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCc-EEEE--EEhhhHHHHhccc
Q 024527 6 LVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN-ISMG--MNLNNVSKMLKCA 82 (266)
Q Consensus 6 ~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~-~~~g--i~l~~L~~ilk~~ 82 (266)
-.+.+.+.+++-+++++-+++.++++++||.+++.+..|.++..+.+.+.+|+.|....+ ..++ +.++...+++|.+
T Consensus 7 ~~nlr~lArai~sLSri~~ev~iev~~~~l~l~t~N~srSa~~~~~f~~~FF~~ydf~~~q~~~~~~v~mK~clsvFRgl 86 (394)
T KOG2810|consen 7 GSNLRVLARAIVSLSRIGEEVTIEVSPLGLCLKTVNESRSAFSCATFKEMFFGVYDFQPPQADFGCKVSMKFCLSVFRGL 86 (394)
T ss_pred cchhHHHHHHhhhHhhhcceeEEEEcCCeeEEEecccccchhhhhhhhHhhccchhcCCccccchhhhhHHHHHHHHhhh
Confidence 356789999999999999999999999999999999999999999999999999998653 5556 8999999999943
Q ss_pred ----CCCceEEEEEcCCCC-eEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCE
Q 024527 83 ----GNDDIITLKADDGSD-TVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDT 157 (266)
Q Consensus 83 ----~~~d~l~l~~~~~~~-~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~ 157 (266)
.........+.+.+. +|.+++.+. .+..+.+.+.+.|-+...-.+....++..+.++++.+.++.+.+..-...
T Consensus 87 ~~~~~~~~~~~~~~~d~~s~rl~~~l~ck-l~~~kt~~atl~d~qS~~~~~d~~~~~n~~~~~~~~L~~~~~nF~~~~~E 165 (394)
T KOG2810|consen 87 LFFAESTHLCESILFDAPSRRLIFTLKCK-LGVGKTILATLSDTQSIQHVLDSSECPNILVQLAKILTPIPDNFAGSDIE 165 (394)
T ss_pred cccccccceeeeecCCCCCcceEEEehhh-hcccceEEEEeecchhhhhccCcccCCcceecchhhcccccccccccchh
Confidence 233445555655555 899999876 35566788888887765333333478999999999999999998886668
Q ss_pred EEEEEeCCeEEEEEE-ecceeEEEEEeecccCCCCCCc-e-EEEecCcEEEEEehHHHHhccccC-CCCceEEEEecCC-
Q 024527 158 VVISVTKEGVKFSTR-GDIGTANIVLRQNTTVDKPEEA-T-IIEMHEPVSLTFALRYMNSFTRAT-PLSNTVTISLSSE- 232 (266)
Q Consensus 158 v~i~~~~~~l~~s~~-gd~g~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~f~~~yL~~~~k~~-~ls~~v~l~~~~~- 232 (266)
+++.+.++++..... ...+...+..+....-.+.... . .....++.+..++++..+.++-.+ .++..+..+++-.
T Consensus 166 ~Tm~a~~~r~~~~~~~~~i~~~~i~~~p~~t~~k~~~se~e~~~~~~p~ev~gsl~~~~~~~lfae~l~s~~~~~~~~p~ 245 (394)
T KOG2810|consen 166 LTMKATDGRRLIENFLTSIVGPEISLSPGPTPVKIDGSELEEEDVAEPSEVPGSLKEFKFIVLFAEALGSSVCAYFGLPG 245 (394)
T ss_pred heeeccCCceecccchhhhcchhhcCCcCCcCcCCCcchhheeeecccceeecchhHHHHHHHHHHHhccchhcccCCCC
Confidence 888888887766542 1222222222221110111111 1 123357889999999888766433 3477888888876
Q ss_pred CcEEEE
Q 024527 233 LPVVVE 238 (266)
Q Consensus 233 ~Pl~l~ 238 (266)
.|+.+.
T Consensus 246 k~~ll~ 251 (394)
T KOG2810|consen 246 KPLLLA 251 (394)
T ss_pred chhhhh
Confidence 477665
No 42
>PRK07761 DNA polymerase III subunit beta; Validated
Probab=98.58 E-value=3.6e-05 Score=70.37 Aligned_cols=180 Identities=15% Similarity=0.193 Sum_probs=125.2
Q ss_pred HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCCeE
Q 024527 20 KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTV 99 (266)
Q Consensus 20 ~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~l 99 (266)
.+++.++.+++.+++|+++|.|. .+++ ...++. .+.++-++.|+.+.|.+++|.+.+ +.+.++.+++ .+
T Consensus 27 ~piL~~iliea~~~~l~l~atd~-~~~i-~~~i~~------~i~~~G~~~v~~k~l~~iik~lp~-~~i~~~~~~~--~l 95 (376)
T PRK07761 27 VPVLAGVLLEADDGGLTLSGFDY-EVSA-RVTIEA------EVDEPGRVLVSGRLLADITRSLPN-KPVDISVDGS--RV 95 (376)
T ss_pred cHHHcCeEEEEeCCEEEEEEECc-cEEE-EEEEEe------EeccCceEEEEHHHHHHHHHhCCC-CcEEEEEcCC--EE
Confidence 45688899999999999999994 4443 333443 245556789999999999999975 3788887643 67
Q ss_pred EEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhccC--C-------EEEEEEeCCeEEE
Q 024527 100 TFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASIG--D-------TVVISVTKEGVKF 169 (266)
Q Consensus 100 ~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~--d-------~v~i~~~~~~l~~ 169 (266)
.|.-+.. +|.++.+++ ++|.++..+. . ..++++..|.++++...... + .|.+.++++.+.+
T Consensus 96 ~I~~~~~------~~~l~~~~~~~fP~~~~~~~--~-~~~i~~~~L~~~i~~v~~a~s~~~~~piL~gV~l~~~~~~L~l 166 (376)
T PRK07761 96 TLTCGSA------RFTLPTMPVEDYPTLPELPE--A-TGTVDADAFAEAVSQVAVAAGRDDTLPMLTGVRVEIEGDTVTL 166 (376)
T ss_pred EEEECce------EEEecCCCHHHCCCCCCCCC--c-ceEECHHHHHHHHhhEeEEEEcccchhhhceEEEEEeCCEEEE
Confidence 7765443 799999986 5565543221 1 24899999999999987652 1 4788888999988
Q ss_pred EEEecceeEEE-EEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEec
Q 024527 170 STRGDIGTANI-VLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLS 230 (266)
Q Consensus 170 s~~gd~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~ 230 (266)
.|. |..+... .... . . ....++.++....+.|.++.|..+-.+.+.+.++
T Consensus 167 ~AT-Dg~rLa~~~~~~----~--~----~~~~~~~~~iIP~k~l~ei~k~l~~~~~v~i~~~ 217 (376)
T PRK07761 167 AAT-DRYRLAVRELTW----K--P----ASPDISAAALVPARTLSDTAKSLGSGGNVSIALS 217 (376)
T ss_pred EEE-CCceEEEEEecc----C--C----CCCCcceeEEEEhHHHHHHHHhcCCCCcEEEEEe
Confidence 775 3222222 1100 0 0 0123356788999999999998864557999987
No 43
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=98.53 E-value=3e-05 Score=70.67 Aligned_cols=186 Identities=11% Similarity=0.091 Sum_probs=127.8
Q ss_pred HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCCe
Q 024527 19 IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDT 98 (266)
Q Consensus 19 l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~ 98 (266)
..+++.++.+++.+++++++|+|..-.. ...++. .+.++-.+.|+.+.|.+++|.+.++ .+.++.+++ +
T Consensus 26 ~~piL~~ill~a~~~~l~l~atD~e~~i--~~~i~~------~i~e~G~v~v~ak~l~~ivk~lp~~-~i~~~~~~~--~ 94 (367)
T PRK14940 26 ALSILSNVLLAAQDGSLTIKATDTKVSF--ETSIPV------NILAEGSTTVFCDKFVGILSSLPTG-EIELELCDE--Q 94 (367)
T ss_pred chHHhcCEEEEEECCEEEEEEECCceEE--EEEEEe------eeccCeEEEEEhHHHHHHHHhCCCC-ceEEEEcCC--E
Confidence 3467899999999999999999965333 333332 2455667899999999999999754 788887654 6
Q ss_pred EEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEeCCeEE
Q 024527 99 VTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVTKEGVK 168 (266)
Q Consensus 99 l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~~~~l~ 168 (266)
+.|.-+.. ..+|.++.++. ++|.++.+ +....+.+++..|+++++...-. + + -|.+.++++.++
T Consensus 95 l~I~~~~~----~~~f~l~~~~~~~fP~~~~~--~~~~~~~i~~~~L~~~i~~v~~a~s~~~~rpiL~Gv~~~~~~~~l~ 168 (367)
T PRK14940 95 LVITPPNK----KISFQLKTISHESFPCFPEN--EGGVSFAIPTKDLREMINQTIFAVSDDETRYFMNGVYVEFQYGNII 168 (367)
T ss_pred EEEEEcCC----ceEEEEccCChHHCCCCCCC--CCCeEEEECHHHHHHHHhhEeEEEcCCCCCceeEEEEEEEeCCEEE
Confidence 77765322 12799999987 45655443 44467899999999999998753 3 2 477888899999
Q ss_pred EEEEeccee-EEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCC
Q 024527 169 FSTRGDIGT-ANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSEL 233 (266)
Q Consensus 169 ~s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~ 233 (266)
+.|. |.-. +...... + ....+..++....++|..+.|...-++.|.+.++++.
T Consensus 169 ~vAT-Dg~RLa~~~~~~----~-------~~~~~~~~viiP~k~l~~l~kll~~~~~v~i~~~~~~ 222 (367)
T PRK14940 169 CVAT-DGRRLAYIKKKG----E-------SSPQEFSGVIVPPKILGIINKKLSPEGNVTLCITSQN 222 (367)
T ss_pred EEEE-cCceEEEEEecc----C-------CCccccceEEEcHHHHHHHHHhcCCCCcEEEEEeCCE
Confidence 8876 2111 1112210 0 0112234677889999877776543668999888765
No 44
>PRK01115 DNA polymerase sliding clamp; Validated
Probab=98.48 E-value=8e-06 Score=70.17 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCce
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDI 87 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~ 87 (266)
+...|+++++.++-+.+.+.|.++++++++.+.++ ..+...+..+++.|.+|+++++++++.|++.|.+++|.+...+.
T Consensus 137 ~~~~l~~~~~r~~~~~~~v~i~~~~~~l~lsa~~~-g~a~~~i~~~~~~~~~~~g~e~~~i~fn~~YL~d~lk~~~~~~~ 215 (247)
T PRK01115 137 LGDDLKDAIKDAELVSDHIELEADEDKFYIEAEGE-GEDEVELSLDSGPLIELSVEEPAKSSYSLDYLKDMVKATSASDE 215 (247)
T ss_pred EHHHHHHHHHHHHhcCCeEEEEEeCCEEEEEEEeC-CceEEEEecCCCceEEEEecCceeEEEhHHHHHHhhccccCCCe
Confidence 36899999999998999999999999999999887 88888888889999999997789999999999999999887789
Q ss_pred EEEEEcCCCCeEEEEEeCCCCCeEEEEEEe
Q 024527 88 ITLKADDGSDTVTFMFESPTQDKIADFEMK 117 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~ 117 (266)
+.|++.++ .++.++..-.+.+..+.+..|
T Consensus 216 V~l~~~~~-~P~~l~~~~~~~~~~~~~i~P 244 (247)
T PRK01115 216 VTIEFGSD-MPLKLEFEIAGGGKVTYLLAP 244 (247)
T ss_pred EEEEECCC-CCEEEEEEeCCCeEEEEEEec
Confidence 99999664 577777532223444444444
No 45
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=98.39 E-value=0.00011 Score=67.30 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=123.2
Q ss_pred HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcc--eeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCC
Q 024527 20 KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFE--HYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSD 97 (266)
Q Consensus 20 ~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~--~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~ 97 (266)
.+++.++.|++.+++|+++|.|.. +++ ...++.+.-+ ...+.++-.+.++.+.|.+++|.+.++ +.+...++ .
T Consensus 27 ~piL~~ill~a~~~~l~l~atD~e-~~i-~~~i~~~~~~~~~~~i~~~G~v~v~ak~l~~ivk~lp~~--i~~~~~~~-~ 101 (376)
T PRK06673 27 IPILSGIKITADQSGITLIASNSN-IFI-EKFIPSAIDDEQITTILQAGTIVVPAKYFIEIIKKMPSD--IVIKSKNE-Q 101 (376)
T ss_pred chhhcCEEEEEcCCeEEEEEECCc-EEE-EEEEecccccccccccccCEEEEEEhHHHHHHHHcCCCC--cEEEECCC-C
Confidence 356899999999999999999954 332 4444433211 123445567899999999999999853 66665433 3
Q ss_pred eEEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEeCCeE
Q 024527 98 TVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVTKEGV 167 (266)
Q Consensus 98 ~l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~~~~l 167 (266)
.+.|+-+.. +|.++.++. ++|.+ |..+....+.+++..|+++++...-. + + -|.+..+++++
T Consensus 102 ~l~I~~~~~------~f~l~~~~~~dfP~~--~~~~~~~~~~i~~~~L~~~i~kt~fA~s~~e~r~~L~Gv~l~~~~~~l 173 (376)
T PRK06673 102 TITIQSGEI------TLNLNGFPANEFPNV--PQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIELDHNKL 173 (376)
T ss_pred EEEEEECCE------EEEEcCCCHHHCCCC--CCCCCCceEEECHHHHHHHHhhEeEEEecCCCChhceeEEEEEeCCEE
Confidence 677765443 799999986 45554 33345567899999999999987532 2 2 36677778888
Q ss_pred EEEEEeccee-EEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCC-CceEEEEecCC
Q 024527 168 KFSTRGDIGT-ANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPL-SNTVTISLSSE 232 (266)
Q Consensus 168 ~~s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~l-s~~v~l~~~~~ 232 (266)
.+-|. |.-+ +..... ++...+.......+.|..+.|...- .+.|.+.++++
T Consensus 174 ~~vaT-Dg~RLA~~~~~-------------~~~~~~~~~iIP~k~l~el~kll~~~~~~v~i~~~~~ 226 (376)
T PRK06673 174 ICAAT-DSHRLAIRETL-------------ISTNMKANCIVPSATINELLKLMNSNLEFVSIYLSES 226 (376)
T ss_pred EEEEe-cCceEEEEecc-------------cCCCCCCcEEEEHHHHHHHHHhccCCCceEEEEEeCC
Confidence 87665 3112 111110 1111124577889999999988752 45788887765
No 46
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=98.36 E-value=0.00022 Score=65.15 Aligned_cols=186 Identities=12% Similarity=0.183 Sum_probs=125.4
Q ss_pred HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCCeE
Q 024527 20 KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTV 99 (266)
Q Consensus 20 ~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~l 99 (266)
.+++.++.+++.+++|+++|+|.. +++ ...++.+. -++.++-.+.|+.+.|.+++|.+.+ +.+.++..++ +.+
T Consensus 27 ~piL~~ili~a~~~~l~l~atD~e-i~i-~~~i~~~~---~~v~e~G~v~v~ak~l~~ivk~Lp~-~~I~~~~~~~-~~l 99 (375)
T PRK14944 27 FPIFNALKIQTKKNFLILEANNGN-IAI-KIEIKDES---LKIKKEGKIACLGRYFIEIIKKIND-SLIKMTVMEN-NFL 99 (375)
T ss_pred chhhcCEEEEEECCEEEEEEECcc-EEE-EEEEeCCc---ceeecceEEEEehHhHHHHHHhCCC-CcEEEEEcCC-CEE
Confidence 467899999999999999999955 433 44455421 1455666789999999999999974 4788877533 377
Q ss_pred EEEEeCCCCCeEEEEEEeeeecC-CCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEeCCeEEE
Q 024527 100 TFMFESPTQDKIADFEMKLMDID-SEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVTKEGVKF 169 (266)
Q Consensus 100 ~i~~~~~~~~~~~~~~l~li~~~-~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~~~~l~~ 169 (266)
.|+-+.. +|.++.++++ +|.++.+ .+-...+.+++..|+++++...-. + | -|.+...++++.+
T Consensus 100 ~I~s~~s------~f~L~~~~~~~fP~~~~~-~~~~~~~~i~~~~l~~~i~~t~fa~s~de~r~~L~Gv~~~~~~~~l~~ 172 (375)
T PRK14944 100 VIKTEFC------EYKLKLMDLCNFLELDFF-FEKKEFFEIKTHFFKKIIKEINISTSKNEKRPILTGLNLIYQKNLLKA 172 (375)
T ss_pred EEEECcE------EEEEcCCCHHHCCCCCcc-cCcCeEEEECHHHHHHHHhheeEEEccccCccceeEEEEEEECCEEEE
Confidence 7765443 7999999874 4544321 244467899999999999998642 3 2 3667777888888
Q ss_pred EEEeccee-EEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCC--CceEEEEecCCC
Q 024527 170 STRGDIGT-ANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPL--SNTVTISLSSEL 233 (266)
Q Consensus 170 s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~l--s~~v~l~~~~~~ 233 (266)
-|. |.-+ +..... ++. ..+.+.....+.|..+.|...- .+.|.+.++++.
T Consensus 173 vAT-DghRLa~~~~~-------------~~~~~~~~~~iIP~k~l~el~kll~~~~~~~v~i~~~~~~ 226 (375)
T PRK14944 173 LAT-DSFRMSQKKIK-------------LDFNYHNFNIVIPNKSLEELSKILEYYQSKNLKIYSDSKK 226 (375)
T ss_pred EEE-ccceeEEEEec-------------cCCCCCceEEEEECchHHHHHHHhccCCCCcEEEEEcCCE
Confidence 765 3112 111110 100 1235677888889888887642 457888887543
No 47
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=98.27 E-value=0.0005 Score=62.80 Aligned_cols=190 Identities=13% Similarity=0.158 Sum_probs=125.8
Q ss_pred HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCc-eEEEEEcC-CCC
Q 024527 20 KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDD-IITLKADD-GSD 97 (266)
Q Consensus 20 ~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d-~l~l~~~~-~~~ 97 (266)
.+++.++.+++.++++.++|+|.. ++ +...++. +++++=.+.++.+.|.+++|.+.+++ .+.++.++ +++
T Consensus 27 ~pIL~~ili~a~~~~l~l~atD~e-i~-i~~~i~~------~i~e~G~~~vpak~l~eivr~lp~~~~~i~~~~~~~~~~ 98 (373)
T PRK14942 27 KSILSNLKIEAEEKEVFLSATDLE-IS-IKTSVPA------TVGQKGTASLPAKQLSSFFKTIHFETTLLSLEESDSESS 98 (373)
T ss_pred chhhcCEEEEEECCEEEEEEECCC-eE-EEEEEee------eeccCeEEEEEhHHHHHHHHhCCCCCceEEEEEccCCCC
Confidence 467899999999999999999955 33 2333442 24556779999999999999997543 57787732 334
Q ss_pred eEEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEeCCeE
Q 024527 98 TVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVTKEGV 167 (266)
Q Consensus 98 ~l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~~~~l 167 (266)
.+.|...+.++ ..+|.++.+++ ++|+++ ..+....+.+++..|+++++...-. + | -|.+..+++.+
T Consensus 99 ~~~I~~~~~~~--~~~f~l~~~~~~dfP~~~--~~~~~~~~~i~~~~L~~~i~~t~fa~s~de~R~~L~Gv~~~~~~~~l 174 (373)
T PRK14942 99 IVYITDASGKN--DYKSKISGMDAEEIKTIS--KVDESQVSSFPSQLINDMIRKTSYAIAHEDQRFIFNGLYMIPDGTKL 174 (373)
T ss_pred EEEEEECCCCC--ccEEEEccCCHHHCCCCC--CCCCceEEEECHHHHHHHHhhEeEEEeccccchhheeEEEEEeCCEE
Confidence 67775422210 12799999987 455544 3355567889999999999987643 2 2 46677778888
Q ss_pred EEEEEeccee-EEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCC
Q 024527 168 KFSTRGDIGT-ANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSEL 233 (266)
Q Consensus 168 ~~s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~ 233 (266)
++-|. |.-+ +...... +. ....+.......+.|..+.|...-.+.+++.++++.
T Consensus 175 ~~vAT-Dg~RLa~~~~~~----~~-------~~~~~~~~iIP~k~l~el~kll~~~~~v~i~~~~~~ 229 (373)
T PRK14942 175 IFVGT-DGRRLCKIERTL----PS-------PLQFKDSIIVPAKAVREISKMIATSETGNIGLIDEQ 229 (373)
T ss_pred EEEEe-chHHeEEEeccc----CC-------CCCCCceEEEehHHHHHHHHhcCCCCcEEEEEcCCE
Confidence 87665 3111 1111100 00 011234678889999999998764567888888764
No 48
>PRK14947 DNA polymerase III subunit beta; Provisional
Probab=98.27 E-value=0.00073 Score=61.95 Aligned_cols=186 Identities=10% Similarity=0.099 Sum_probs=122.6
Q ss_pred HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCCeE
Q 024527 20 KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTV 99 (266)
Q Consensus 20 ~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~l 99 (266)
.+++.++.+++.+++|.++|+|.. +++ ...++. .++++-++.|+.+.|.+++|.+.++ .+.++.+++.+.+
T Consensus 27 ~pIL~~ili~a~~~~L~l~atD~e-i~i-~~~i~~------~i~e~G~~~v~ak~l~divk~lp~~-~i~i~~~~~~~~l 97 (384)
T PRK14947 27 AAYLRTIWLKAEDGTLSIMSTDSN-IEF-RGTYPA------EVTEPGLAGVQGRAFVDLVRKLPPG-EITLKLDASSGNL 97 (384)
T ss_pred chhhcCEEEEEECCEEEEEEECCc-EEE-EEEEee------eeccCeEEEEEhHHHHHHHHhCCCC-ceEEEEeCCCCEE
Confidence 456899999999999999999955 332 333442 2455677899999999999999854 7888886544477
Q ss_pred EEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEe-CCeEE
Q 024527 100 TFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVT-KEGVK 168 (266)
Q Consensus 100 ~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~-~~~l~ 168 (266)
.|.-+.. +|.++.+++ ++|.++ ..+-...+.+++..|+++++...-. + | -|.+... ++.+.
T Consensus 98 ~I~~g~s------~f~l~~~~~~~fP~~~--~~~~~~~~~i~~~~L~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~~l~ 169 (384)
T PRK14947 98 LIEQGRR------KYKLPVNDPSWFQNFS--AFPAEGAVVWSGDFLQELIDRIAFCISDEDAMEAIACLKIKPVADNAIE 169 (384)
T ss_pred EEEECCe------EEEEcCCCHHHCCCCC--CCCCCcEEEECHHHHHHHHhheeeEeeccchhhhhceEEEEEcCCCEEE
Confidence 7765433 799999987 456543 3333457889999999999988643 3 2 3556543 45677
Q ss_pred EEEEeccee-EEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCC
Q 024527 169 FSTRGDIGT-ANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSEL 233 (266)
Q Consensus 169 ~s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~ 233 (266)
+-|. |.-+ +...+.. +... ......++....+.|..+.|..+ .+.|.+.++++.
T Consensus 170 ~vAT-Dg~RLa~~~~~~----~~~~-----~~~~~~~~iIP~k~l~el~kll~-~~~v~i~~~~~~ 224 (384)
T PRK14947 170 VCGL-NGHQFALLRFLN----DDIH-----AKLPQEGILIQKKYLLELKKWLG-ADEIELSISEKR 224 (384)
T ss_pred EEEc-CccceEEEEccc----cccc-----cccCCccEEEechHHHHHHHhCC-CCcEEEEEeCCE
Confidence 7654 3111 1111110 0000 00112356778888988888876 678888888655
No 49
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=98.19 E-value=0.00052 Score=62.50 Aligned_cols=181 Identities=11% Similarity=0.156 Sum_probs=117.2
Q ss_pred hhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCCeEEE
Q 024527 22 LVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTF 101 (266)
Q Consensus 22 l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~l~i 101 (266)
++.++.+++++++++++|+|.. +++ ...++.. +.-+++++-.+.|+.+.|.+++|.+. + .+.++.+++ .+.|
T Consensus 28 iL~~iliea~~~~l~l~atD~e-i~i-~~~i~~~--~~~~i~e~G~~~v~ak~l~eIvk~lp-~-~I~~~~~~~--~l~I 99 (366)
T PRK14946 28 PLSGFFLKLTRSGLFIISTNSE-LSY-KSFINKK--DLIEINDVGSCLIDGVFLKNIIKKSD-N-QISFELIGS--ELKV 99 (366)
T ss_pred ccccEEEEEECCeEEEEEECCc-EEE-EEEEeCC--cCceeccCeEEEEEcHHHHHHHHcCC-C-cEEEEEeCC--EEEE
Confidence 5788999999999999999944 443 3344420 01124556779999999999999995 3 377777644 6777
Q ss_pred EEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C-------EEEEEEeCCeEEEEE
Q 024527 102 MFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D-------TVVISVTKEGVKFST 171 (266)
Q Consensus 102 ~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d-------~v~i~~~~~~l~~s~ 171 (266)
+-+.. +|.++.++. ++|.+ |..+....+.+++..|+++++...-. + | -|.+..+++++.+-|
T Consensus 100 ~s~~s------~f~l~~~~~~~fP~~--~~~~~~~~~~i~~~~l~~~i~kt~fA~s~de~r~~L~Gv~~~~~~~~l~~vA 171 (366)
T PRK14946 100 FWEDA------QFSKTLRDSSFFPEI--NFEQKGIKLTVNAKNLKRAIKNTAFATTNNPNQPILSAINLKSEDNFLHFSA 171 (366)
T ss_pred EECce------EEEEcCCCHHHCCCC--CcccCCcEEEECHHHHHHHHhhEEEEEeCCCCcccceEEEEEEeCCEEEEEE
Confidence 65433 799999987 44554 43355568899999999999988642 3 2 366677788888866
Q ss_pred Eeccee-EEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCC
Q 024527 172 RGDIGT-ANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSEL 233 (266)
Q Consensus 172 ~gd~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~ 233 (266)
. |.-+ +..... ++...+.++....+.|..++.. ...+.|.+.++++.
T Consensus 172 T-Dg~RLA~~~~~-------------~~~~~~~~~iIP~k~l~ell~~-~~~~~v~i~~~~~~ 219 (366)
T PRK14946 172 T-DTIRFASEKIE-------------ISNPSRIDISISAKNLKDFIPP-ELDKDIELFIESSK 219 (366)
T ss_pred e-cchheEEEEec-------------cCCCCcceEEEeccCHHHHhcc-cCCCcEEEEEeCCE
Confidence 5 3112 111111 0001123445566777776321 12457888888654
No 50
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=97.95 E-value=0.00013 Score=55.60 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHH---------hhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEAIK---------ELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~l~---------~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
...|.+.++.++ +++.++.+++.+++|.++|+|..-. +...++...- .++-.+.|+.+.|.+++
T Consensus 7 k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~~~~l~l~atD~e~~--i~~~i~~~~~-----~~~G~~~v~ak~l~~iv 79 (120)
T PF00712_consen 7 KEELLKALSKVSKVIPSKSTIPILSNILIEAKDNKLTLTATDLEIS--IRTTIPAEIE-----EEEGSILVPAKKLFDIV 79 (120)
T ss_dssp HHHHHHHHHHHHTCSSSSSSSGGGGEEEEEEETTEEEEEEE-SSEE--EEEEEETEEE-----EE-EEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCCCCChHHhccEEEEEeCCEEEEEEEcCeEE--EEEEEeceee-----cCCeEEEEEhHHHHHHH
Confidence 445555666644 4688999999999999999996533 3444444321 23467899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecC
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDID 122 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~ 122 (266)
|.+.+++.+.++.++ +.+.|+.+.. +|.++.++.+
T Consensus 80 k~lp~~~~I~i~~~~--~~l~I~~~~~------~f~l~~~~~~ 114 (120)
T PF00712_consen 80 KKLPDDEEITIEVEE--NKLTIKSGKS------RFKLPTLDAE 114 (120)
T ss_dssp HHSSSTSEEEEEEET--TEEEEEETTE------EEEEE-BEGG
T ss_pred HhCCCCCeEEEEEeC--CEEEEEECCE------EEEEcCCCHH
Confidence 999987899999976 4888885443 8999999864
No 51
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=97.90 E-value=0.0018 Score=49.97 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEE----e-cCCCcceeeeCCcEEEEEEhhhHHHHhccc
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALL----L-RSEGFEHYRCDRNISMGMNLNNVSKMLKCA 82 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~----l-~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~ 82 (266)
.+..|+++++.+..+-+.+.+.++++++.+.+.....-+-+.+. . ..+...+.+|.++++-..+++.|..+.|.+
T Consensus 14 ~S~~f~~~~kdl~~v~d~v~i~~~~~~~~f~~~Gd~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~fsl~YL~~~~Ka~ 93 (128)
T PF02747_consen 14 PSSEFKKICKDLSSVGDTVTISADKDSVIFSAEGDIGSAEVEFKETESSEDDEELIEIEVKEPVSSSFSLDYLNDFSKAA 93 (128)
T ss_dssp EHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEESSEEEEEEEEEEEEETTCTCESEEEESSEEEEEEEHHHHHHHGGGG
T ss_pred EHHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEeccCcEEEEEeeccccccccccceeeeccceeeEEeHHHHHhhhccc
Confidence 37899999999999999999999999999998755443333221 1 234456778888888899999999999988
Q ss_pred CCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEE
Q 024527 83 GNDDIITLKADDGSDTVTFMFESPTQDKIADFEM 116 (266)
Q Consensus 83 ~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l 116 (266)
.-.+.++|.+.++. +|.+++.-.+.|.. .|.+
T Consensus 94 ~ls~~V~l~l~~~~-Pl~l~f~~~~~g~l-~f~L 125 (128)
T PF02747_consen 94 PLSDEVTLELGEDM-PLKLEFELADGGSL-KFYL 125 (128)
T ss_dssp GTTSEEEEEEETTS-EEEEEEEETTTEEE-EEEE
T ss_pred cCCceEEEEEcCCC-CEEEEEEeCCCeEE-EEEE
Confidence 87899999997654 77777765544544 4443
No 52
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY].
Probab=97.70 E-value=0.0021 Score=54.76 Aligned_cols=106 Identities=17% Similarity=0.280 Sum_probs=83.1
Q ss_pred EEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCC-CeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhccc
Q 024527 4 LRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSS-HVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCA 82 (266)
Q Consensus 4 a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~-r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~ 82 (266)
++++ .+.|+++++-+..+.+.+.+.++++++.+.+-.+. ..+.....-....+..|.+.++..++.+.+.|.++++.+
T Consensus 133 i~i~-~~~L~~~i~~~~~~~~~i~i~~~~~~l~lss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~yL~~~l~~~ 211 (248)
T cd00577 133 VTLP-SDELKDIVRDLESISDSVTISASKDGFKFSAEGELGGASVTLLPKDSDLLVTIECSEPVSSTYSLKYLKDFTKAA 211 (248)
T ss_pred EEEE-HHHHHHHHHHHHHcCCEEEEEEcCCEEEEEEeecCCceEEEEecCCCCceEEEEeCCceEEEEhHHHHHHHhhhc
Confidence 4333 68999999999999999999999999999987763 333333333455677788899999999999999999998
Q ss_pred CCCceEEEEEcCCCCeEEEEEeCCCCCeE
Q 024527 83 GNDDIITLKADDGSDTVTFMFESPTQDKI 111 (266)
Q Consensus 83 ~~~d~l~l~~~~~~~~l~i~~~~~~~~~~ 111 (266)
+..+.+.|..+++ .++.++......+..
T Consensus 212 ~~s~~v~i~~~~~-~p~~i~~~~~~~~~~ 239 (248)
T cd00577 212 PLSDKVTLSFGSD-GPLSLEFKIADGGHL 239 (248)
T ss_pred ccCCeEEEEEcCC-CCEEEEEEcCCCcEE
Confidence 8678999999776 688887766533333
No 53
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1U76_E 2ZVK_B 1VYJ_A 1UL1_B 3P87_D 2ZVM_C 2ZVL_A 1AXC_C 3VKX_A 3TBL_B ....
Probab=97.55 E-value=0.0087 Score=46.13 Aligned_cols=105 Identities=11% Similarity=0.224 Sum_probs=80.0
Q ss_pred EEEE-ehHHHHHHHHHhhccCCEEEEEEeCCeEEEEEEeccee--EEEEEeecccCCCCCCceEEEecCcEEEEEehHHH
Q 024527 136 IVRM-PSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGT--ANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYM 212 (266)
Q Consensus 136 ~i~~-~s~~~~~~i~~~~~~~d~v~i~~~~~~l~~s~~gd~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL 212 (266)
++++ +++.|+++++-++.+-+.+.|.++++.+.+.+-....- +...++ .+.....+|.++..+..+++.|
T Consensus 3 ea~~~~a~~~K~i~eal~~lv~e~~f~~~~~Gi~~~amD~s~Valv~l~l~-------~~~F~~Y~~d~~~~igvnl~~l 75 (127)
T PF00705_consen 3 EAKFSDASLFKKIFEALKDLVDEANFEFTEDGISLQAMDPSHVALVDLELP-------SEAFEEYRCDKELSIGVNLSDL 75 (127)
T ss_dssp EEEESSHHHHHHHHHHHTTTCSEEEEEEESSEEEEEEE-TTSSEEEEEEEE-------GGGSSEEEESSSEEEEEEHHHH
T ss_pred EEEEcchHHHHHHHHHHHHHhhEEEEEEccCCEEEEEECCCcEEEEEEEec-------hhcceEEEcCCCEEEEEEHHHH
Confidence 4555 56999999999999999999999999999988753222 444442 1223358888899999999999
Q ss_pred HhccccCCCCceEEEEecCCC-cEEEEEEeCCcEEE
Q 024527 213 NSFTRATPLSNTVTISLSSEL-PVVVEYKIAEMGYI 247 (266)
Q Consensus 213 ~~~~k~~~ls~~v~l~~~~~~-Pl~l~~~i~~~g~~ 247 (266)
.+++|.+.-.+.+.++..++. -+.+.+.-...+.+
T Consensus 76 ~kiLk~~~~~D~l~l~~~~~~~~l~i~~~~~~~~~~ 111 (127)
T PF00705_consen 76 KKILKRAKKDDSLELESDEEPDKLNIVFENEKKGRV 111 (127)
T ss_dssp HHHHTTSSTTSEEEEEEESSSSEEEEEEEETTSSEE
T ss_pred HHHHhhccCCCEEEEEEeCCCCEEEEEEEcCCCCeE
Confidence 999999987889999987764 45566665554544
No 54
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.45 E-value=0.0091 Score=51.78 Aligned_cols=111 Identities=12% Similarity=0.181 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecC-----CCcceeeeCCcEEEEEEhhhHHHHhcccC
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRS-----EGFEHYRCDRNISMGMNLNNVSKMLKCAG 83 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~-----~~F~~y~~~~~~~~gi~l~~L~~ilk~~~ 83 (266)
...|+++++.++.+-+.+.+.++++++++.+-...-.+-+.+.-.. +...+++++++.+-..+++.|..+.|.++
T Consensus 141 s~~f~~~~kdl~~v~d~v~i~~~~~~~~f~~~Gd~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~y~l~YL~~~~Ka~~ 220 (259)
T TIGR00590 141 SSEFARICRDLSQFSDSVVISCTKEGVKFSAKGDIGSGNVKLKQTSDTDKEEEAVTIEMKEPVTLTFAIKYLNLFTKATP 220 (259)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeCCEEEEEEEecccEEEEEEecCCCCCCCcceEEEEecCceeeeeeHHHHHHhhhhcc
Confidence 7799999999999999999999999999998654444434443222 22356778888888999999999999888
Q ss_pred CCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeee
Q 024527 84 NDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120 (266)
Q Consensus 84 ~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~ 120 (266)
-.+.++|.++.+. +|.+++.-.+.|..+.|--|-++
T Consensus 221 ls~~V~l~~~~~~-Pl~l~y~i~~~g~l~f~lAPrie 256 (259)
T TIGR00590 221 LSDRVTLSMSNDV-PLVVEYKIKDMGFLRFFLAPKIE 256 (259)
T ss_pred CCCeEEEEEcCCC-CEEEEEEeCCCeEEEEEEcCccC
Confidence 7899999997554 67776664444656444444343
No 55
>PLN00057 proliferating cell nuclear antigen; Provisional
Probab=97.31 E-value=0.016 Score=50.39 Aligned_cols=111 Identities=12% Similarity=0.191 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCC-------CcceeeeCCcEEEEEEhhhHHHHhcc
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSE-------GFEHYRCDRNISMGMNLNNVSKMLKC 81 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~-------~F~~y~~~~~~~~gi~l~~L~~ilk~ 81 (266)
+..|+++++.+..+-+.+.++++++++.+.+......+ .+.+.+. .-.++++.++++-..+++.|..+.|.
T Consensus 141 s~~f~~~~kdl~~vsd~v~i~~~~~~~~f~~~Gd~g~~--~~~l~~~~~~~~~~~~~~i~~~e~~~~~y~l~YL~~~~Ka 218 (263)
T PLN00057 141 SAEFQRICKDLSSIGDTVVISVTKEGVKFSTSGDIGTA--NIVLRQNTTVDKPEEKTVIEMQEPVSLTFALRYLNSFTKA 218 (263)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeCCEEEEEEEecCcEE--EEEEecCCCCCCccceEEEEecCceEEEEhHHHHHHhhcc
Confidence 78999999999999999999999999999997544444 4444322 13456778888889999999999998
Q ss_pred cCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecC
Q 024527 82 AGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDID 122 (266)
Q Consensus 82 ~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~ 122 (266)
++-.+.+.|.+..+. +|.+++.-.+.|..+.|--|-++-+
T Consensus 219 ~~ls~~V~i~~~~~~-Pl~l~y~l~~~g~l~f~LAPri~~~ 258 (263)
T PLN00057 219 TPLSDTVTLSLSKEL-PVVVEYKIAEMGYIRYYLAPKIEED 258 (263)
T ss_pred ccCCCeEEEEEcCCC-CEEEEEEeCCCeEEEEEEcCCCCCc
Confidence 887899999997554 6777666544566655555555544
No 56
>PTZ00113 proliferating cell nuclear antigen; Provisional
Probab=97.19 E-value=0.023 Score=49.70 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEec-----CCCcceeeeCCcEEEEEEhhhHHHHhcccC
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLR-----SEGFEHYRCDRNISMGMNLNNVSKMLKCAG 83 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~-----~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~ 83 (266)
+..|+++++.++.+-+.+.++++++++.+.+-.....+-+.+.-. .+..-+++++++++...+++.|..+.|.+.
T Consensus 143 s~~f~~i~rdl~~vgd~V~i~~~~~~v~f~a~Gd~g~~~i~l~~~~~~~~~~~~~~~~v~~~~~~~ysl~YL~~f~Ka~~ 222 (275)
T PTZ00113 143 SKELTNICRQMNEFSDTVKIEIDSNSIKFTTQGDLGDGEVVLKPRPPTSEDDCGVTIKVRKPIKQSYATKYLNMFAKSGC 222 (275)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeCCEEEEEEeccCcEEEEEEecCCCCCCccceEEEEecCceeeEEhHHHHHHhhcccc
Confidence 779999999999999999999999999999876555554444321 234466778889999999999999999877
Q ss_pred CCceEEEEEcCCCCeEEEEEeCC----------CCCeEEEEEEeeeecCC
Q 024527 84 NDDIITLKADDGSDTVTFMFESP----------TQDKIADFEMKLMDIDS 123 (266)
Q Consensus 84 ~~d~l~l~~~~~~~~l~i~~~~~----------~~~~~~~~~l~li~~~~ 123 (266)
-.+.++|.+..+. +|.+.+.-. ..|..+.|--|-++.+.
T Consensus 223 ls~~V~l~l~~d~-Pl~ley~i~~~~~~~~~~~~~G~l~fyLAPkie~~~ 271 (275)
T PTZ00113 223 LSDVVTLGLSDNR-PIEVKYEIKDTSPDARHTHKLGEVKFFLAPKMDDDM 271 (275)
T ss_pred CCCeEEEEEcCCC-CEEEEEEeccccccccccCCccEEEEEEcCccCccc
Confidence 7899999997554 555554432 13566555545555443
No 57
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage.; GO: 0006281 DNA repair; PDB: 3GGR_A 3G65_A 3A1J_A.
Probab=97.10 E-value=0.0065 Score=52.40 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=78.9
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEEC-----CCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhccc
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMD-----SSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCA 82 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D-----~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~ 82 (266)
+++.|+++++....=.+++.+.++++.+.++... +.+.....+.+..+-|++|.+.++..+.++++.|.-++.-+
T Consensus 136 ~~~~l~~~l~~f~~~~eeitl~~~~~~v~~~s~~~~~~~~~~~l~t~v~i~~~ef~~~~~~~~~~itF~lKefka~l~~a 215 (252)
T PF04139_consen 136 SPRLLKDLLDHFPSSTEEITLEVTDDKVSFKSYTEEIQDSKQPLSTEVTISTEEFDEYNVQEDTDITFSLKEFKAILSFA 215 (252)
T ss_dssp EHHHHHHHHTTS-TT--EEEEEEECTCEEEEEE-----SSS---EEEEEE-GGGSSEEE--TT-EEEEEHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcCCChhhEEEEecCCEEEEEeecccccccccceEEEEEEehHhcceEEcCCCCEEEEEeHHHHHHHHHH
Confidence 4789999999888778999999999999988643 44667789999999999999999999999999999999987
Q ss_pred CC-CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEe
Q 024527 83 GN-DDIITLKADDGSDTVTFMFESPTQDKIADFEMK 117 (266)
Q Consensus 83 ~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~ 117 (266)
.. +..+.+.++..|+|+.|.+++. .+..-.|.+.
T Consensus 216 e~~~~~i~~~f~~pG~Pi~~~~~~~-~~~~~~~vla 250 (252)
T PF04139_consen 216 ESLSLPISIYFDNPGRPILFELEQN-DHFEAEFVLA 250 (252)
T ss_dssp HHTTEEEEEEESSTTS-EEEEEE---SSEEEEEEE-
T ss_pred HhcCCcEEEEECCCCCcEEEEECCC-CcEEEEEEEE
Confidence 53 4579999999999999999853 2344455443
No 58
>PTZ00483 proliferating cell nuclear antigen; Provisional
Probab=97.01 E-value=0.032 Score=48.49 Aligned_cols=94 Identities=7% Similarity=0.099 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCceE
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDII 88 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l 88 (266)
+..|+++++.++.+-+.+.+.++++++++.+-.....+-+.+.-+... -..+++++++....++.|..+.|.+.-.+.+
T Consensus 147 s~~f~~i~kdl~~vsD~v~i~~~~~~v~f~a~Gd~~~~~~~l~~~~~~-v~~~~~~~v~~~fsl~YL~~f~Ka~~lsd~V 225 (264)
T PTZ00483 147 SKKFQEFAKYLHSIGDTVSISMKKDEMRLETEGEGIKASKQFHNDVGD-VRVTSTESLSQEFATRYLVLFSKATSLADEV 225 (264)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEECCEEEEEEeecCcEEEEEEccCCCc-eEEEecCcchheehHHHHHHhhccccCCCeE
Confidence 779999999999999999999999999999976666555555422222 3344777777788999999999987878999
Q ss_pred EEEEcCCCCeEEEEEe
Q 024527 89 TLKADDGSDTVTFMFE 104 (266)
Q Consensus 89 ~l~~~~~~~~l~i~~~ 104 (266)
+|.+..+. |+.+.+.
T Consensus 226 ~i~l~~~~-Pl~ley~ 240 (264)
T PTZ00483 226 SINLSAGI-PLSVKFN 240 (264)
T ss_pred EEEEcCCC-CEEEEEE
Confidence 99997554 5666554
No 59
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=96.80 E-value=0.12 Score=39.08 Aligned_cols=100 Identities=8% Similarity=0.139 Sum_probs=71.0
Q ss_pred EEEEehHHHHHHHHHhhccCC---------EEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEec-CcEEE
Q 024527 136 IVRMPSAEFARICKDLASIGD---------TVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMH-EPVSL 205 (266)
Q Consensus 136 ~i~~~s~~~~~~i~~~~~~~d---------~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 205 (266)
++++..++|.++++.+..+-. .|.|.++++.+++++..-.-.....+. .... ++-+.
T Consensus 2 kf~i~k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~~~~l~l~atD~e~~i~~~i~-------------~~~~~~~G~~ 68 (120)
T PF00712_consen 2 KFTINKEELLKALSKVSKVIPSKSTIPILSNILIEAKDNKLTLTATDLEISIRTTIP-------------AEIEEEEGSI 68 (120)
T ss_dssp EEEEEHHHHHHHHHHHHTCSSSSSSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEE-------------TEEEEE-EEE
T ss_pred EEEEEHHHHHHHHHHHHhhhCCCCChHHhccEEEEEeCCEEEEEEEcCeEEEEEEEe-------------ceeecCCeEE
Confidence 578899999999999998742 699999999999998752223333331 2223 67789
Q ss_pred EEehHHHHhccccCCCCceEEEEecCCCcEEEEEEeCCcEEEEEEEc
Q 024527 206 TFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLA 252 (266)
Q Consensus 206 ~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i~~~g~~~~~ia 252 (266)
..+.++|.+++|.++-.+.|.++..+ .-+.++ .+.+.++.-..
T Consensus 69 ~v~ak~l~~ivk~lp~~~~I~i~~~~-~~l~I~---~~~~~f~l~~~ 111 (120)
T PF00712_consen 69 LVPAKKLFDIVKKLPDDEEITIEVEE-NKLTIK---SGKSRFKLPTL 111 (120)
T ss_dssp EEEHHHHHHHHHHSSSTSEEEEEEET-TEEEEE---ETTEEEEEE-B
T ss_pred EEEhHHHHHHHHhCCCCCeEEEEEeC-CEEEEE---ECCEEEEEcCC
Confidence 99999999999999833899999988 445554 24455544433
No 60
>PHA03383 PCNA-like protein; Provisional
Probab=96.76 E-value=0.1 Score=45.38 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=80.5
Q ss_pred EEEEE-ehHHHHHHHHHhhccCCEEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHH
Q 024527 135 AIVRM-PSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMN 213 (266)
Q Consensus 135 ~~i~~-~s~~~~~~i~~~~~~~d~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~ 213 (266)
.++++ +++.|+++++.++.+-+.+.|.++++.+.+.+-....-+=+.+.. ..+.....+|.++.++.+++..|.
T Consensus 8 fe~~~~~a~~~K~iieai~~lv~e~~f~~t~~Gi~lqamD~shVaLv~l~L-----~~~~F~~Y~~d~~~~iGv~~~~l~ 82 (262)
T PHA03383 8 FHIRTIQGSVIKSLFDVLKEILHDVNIFFRPTGVYISALDGAKVSLVHMKL-----DAESFEEYHCDQTYEIGVNVSNMF 82 (262)
T ss_pred EEEEecchHHHHHHHHHHHHHhceEEEEECCCcEEEEEECCCcEEEEEEEe-----CHHhCceEecCCceEEEEEHHHHH
Confidence 34444 669999999999999999999999999999886432222222221 112222478888989999999999
Q ss_pred hccccCCCCceEEEEecCC--CcEEEEEEeCC-cEEEEEEEcccCCCC
Q 024527 214 SFTRATPLSNTVTISLSSE--LPVVVEYKIAE-MGYIRFYLAPKIEED 258 (266)
Q Consensus 214 ~~~k~~~ls~~v~l~~~~~--~Pl~l~~~i~~-~g~~~~~iaPr~~~~ 258 (266)
+++|.+.-.+.+.++...+ .-|.+.+.-.. +..-.|.+ |.++-+
T Consensus 83 KILk~a~~~D~l~l~~~~~~~~~l~i~~~~~~~~~~~~f~l-~Lidi~ 129 (262)
T PHA03383 83 KLLRTAGSHDSILFRYLKNSPHFLEITIQNFEKNSLTKFQL-KLIEID 129 (262)
T ss_pred HHHhccCCCCEEEEEecCCCCCEEEEEEEeCCCCcEEEEEE-EccccC
Confidence 9999998788999986333 35666554222 23344444 445533
No 61
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D 2POL_A ....
Probab=96.56 E-value=0.084 Score=39.99 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=65.5
Q ss_pred ChhhHHHHHHHHHhhhc----eeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccC
Q 024527 8 QGSLLKKVLEAIKELVN----DANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAG 83 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~----~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~ 83 (266)
+...|..+++-+.-+.+ .+.|.++++.+++.+.++. .+-..-.++. .|. .+++.+++|.+.|.++|+.+.
T Consensus 15 ~r~~L~~al~Rv~~~~~~~~~~v~l~~~~~~l~l~~~~~~-~g~~~e~i~~----~~~-g~~~~i~fN~~yL~d~L~~~~ 88 (121)
T PF02768_consen 15 DRKELLDALKRVSIISSEKNNPVKLSFSDNQLTLSSQSSE-IGEAEEEIPI----EYE-GEPLEIAFNPKYLLDALKAID 88 (121)
T ss_dssp EHHHHHHHHHHHHHHHTTTTGEEEEEEETTEEEEEEEETT-TEEEEEEEE-----EEE-ES-EEEEEEHHHHHHHHHCC-
T ss_pred EHHHHHHHHHHHHHHhhcCCceEEEEEECCEEEEEEcCCC-CceEEEEEee----eec-CCceEEEECHHHHHHHHhhcC
Confidence 46778888888876653 7999999999999997754 2334444543 233 457999999999999999987
Q ss_pred CCceEEEEEcCCCCeEEEEE
Q 024527 84 NDDIITLKADDGSDTVTFMF 103 (266)
Q Consensus 84 ~~d~l~l~~~~~~~~l~i~~ 103 (266)
++.+.|.+.+...++.|+-
T Consensus 89 -~~~V~l~~~~~~~p~~i~~ 107 (121)
T PF02768_consen 89 -GEEVTLEFSDPSSPILITP 107 (121)
T ss_dssp -SSEEEEEESSTTS-EEEEE
T ss_pred -CCEEEEEEcCCCCCEEEEe
Confidence 5789999987777877754
No 62
>PHA02545 45 sliding clamp; Provisional
Probab=95.21 E-value=1.6 Score=36.66 Aligned_cols=120 Identities=13% Similarity=0.194 Sum_probs=77.5
Q ss_pred ceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEE-EEEhhhHHHHhcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEE
Q 024527 34 GFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISM-GMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIA 112 (266)
Q Consensus 34 gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~-gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~ 112 (266)
|=.+.......++++.+.++..+= ..+ .-+|..|..+|..++.+-.+ ..+.+ ..+.+ .+.+ +
T Consensus 26 Gn~I~T~s~~~~~yAeAtI~d~fd--------~e~~IYDL~~FLsiL~l~~~~aei--~~~~~-~~i~i--~~~r----~ 88 (223)
T PHA02545 26 GNFIMTKSVNGVIYAEATIEDEFD--------SEFAIYDLNSFLSILSLVGDDAEI--TFDED-GNIVI--RGGR----S 88 (223)
T ss_pred CCEEEEEecCceEEEEEeeccccc--------ceeeEeeHHHHHHHHhccCCCCee--EEccC-ceEEe--cCCc----e
Confidence 334445677899999999997652 223 44789999999988643333 34322 23333 2221 1
Q ss_pred EEEEeeeecCC-----CCCCCCcceeeEEEEEehHHHHHHHHHhhccC-CEEEEEEeCCeEEEEEE
Q 024527 113 DFEMKLMDIDS-----EHLGIPEAEYHAIVRMPSAEFARICKDLASIG-DTVVISVTKEGVKFSTR 172 (266)
Q Consensus 113 ~~~l~li~~~~-----~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~-d~v~i~~~~~~l~~s~~ 172 (266)
....+--+++. ..+..| .-+.++.+.+.+|+++.|..+.++ +.+.|...++++.+.+.
T Consensus 89 ki~~~~ad~~~Iv~P~k~i~~P--~~dv~f~L~aedl~ql~kas~~l~l~dl~~~~~~G~ivi~~~ 152 (223)
T PHA02545 89 KIKYPYADPSTIVKPKKRVTFP--VADVEFELKAEDLQQLLKASRVLGLDDLAITNIDGKIVINLF 152 (223)
T ss_pred EEEEecCCCceEecCCcccCCC--CccEEEEEcHHHHHHHHHHHHhcCCCeEEEEeeCCEEEEEEE
Confidence 23333333322 134444 245678889999999999999987 78999999999988765
No 63
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus. REC1 mutants are very sensitive to UV light. Mutation leads to a complex phenotype with alterations in DNA repair, recombination, mutagenesis, meiosis and cell division []. The predicted product of the REC1 gene is a polypeptide of 522 amino acid residues with molecular mass 57kDa. The protein shows 3'--5' exonuclease activity, but only in cells over-expressing REC1 []. While it is distinguishable from the major bacterial nucleases, the protein has certain enzymatic features in common with epsilon, the proof-reading exonuclease subunit of Escherichia coli DNA polymerase III holoenzyme []. The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes a 37kDa protein that exhibits partial similarity to the REC1 gene of U. maydis []. The two genes share putative functional similarities in their respective organisms.; GO: 0003684 damaged DNA binding, 0008853 exodeoxyribonuclease III activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3G65_B 3GGR_C 3A1J_C.
Probab=95.18 E-value=0.26 Score=43.08 Aligned_cols=95 Identities=14% Similarity=0.244 Sum_probs=71.5
Q ss_pred ChhhHHHHHHHHHhh-hceeeEEEeC---CceEEEEECCCCeEEEEEEecCCCcceeeeC---CcEEEEEEhhhHHHHhc
Q 024527 8 QGSLLKKVLEAIKEL-VNDANFDCSA---TGFSLQAMDSSHVALVALLLRSEGFEHYRCD---RNISMGMNLNNVSKMLK 80 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l-~~~~~~~~~~---~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~---~~~~~gi~l~~L~~ilk 80 (266)
.+..|+.++.-+... -+.+.+.+++ .++++.+..+...+-+++--.++.++.|+|. +...-.-+++.|.++.|
T Consensus 172 ks~~L~~al~eL~~~~~~~l~i~~s~~~~p~f~l~s~G~~G~s~v~fp~~~~~le~f~~~~~~~~~~~~Y~f~~i~~~~k 251 (275)
T PF02144_consen 172 KSDWLRDALSELDWSNSEELTIYISPPDKPHFRLSSKGPLGSSKVDFPNDSDVLETFECYDGEEPVISRYKFSLIKKAMK 251 (275)
T ss_dssp EHHHHHHHHHTT-TS-CSEEEEEE-S-SSSSEEEEEEETTEEEEEEE-TTSTSEEEEEE----S-EEEEEEHHHHCCHHH
T ss_pred EhHHHHHHHHHHhhccCCeEEEEEEeCCCCEEEEEEEcCCCeEEEEECCCCCceeEEEEeccCceEEEEEeHHHHHHHHH
Confidence 477899999999988 8889999999 5999999865555444444446689999999 44444599999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMF 103 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~ 103 (266)
.++-..++.|..+.++ -|.+++
T Consensus 252 Al~~ssKv~ir~d~~G-lLs~Q~ 273 (275)
T PF02144_consen 252 ALKISSKVSIRIDENG-LLSLQF 273 (275)
T ss_dssp HHTTSSEEEEEEESSS--EEEEE
T ss_pred HhhhccEEEEEeCCCc-EEEEEE
Confidence 9988889999998664 677654
No 64
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=95.05 E-value=0.87 Score=38.23 Aligned_cols=111 Identities=9% Similarity=0.149 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCc-----ceeeeCCcEEEEEEhhhHHHHhcccC
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGF-----EHYRCDRNISMGMNLNNVSKMLKCAG 83 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F-----~~y~~~~~~~~gi~l~~L~~ilk~~~ 83 (266)
+..|.+|.+-++.+-+-+.+.++.+|++|.+......|-+.+.--...= -.-++++++++.+.++.|+.+-|-..
T Consensus 141 a~EF~ricrdls~f~Dsv~I~~tkegv~F~~~Gdig~asi~l~~~~~~d~~e~av~iE~~~pVtltfa~kYln~ftKatp 220 (260)
T KOG1636|consen 141 AGEFSRICRDLSTFSDSVVISATKEGVKFSAKGDIGTASITLSQCTAVDKPEEAVKIEMNEPVTLTFALKYLNQFTKATP 220 (260)
T ss_pred HHHHHHHHHHHhhhcCeEEEEEecceeEEEecccccceeEEEccCCCCCCccceEEEEecCcchhhhHHHHHHHhhcccc
Confidence 7899999999999999999999999999999776666655544333221 12334567788888888888888655
Q ss_pred CCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeee
Q 024527 84 NDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120 (266)
Q Consensus 84 ~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~ 120 (266)
=.+.++|++..+. ++.+.+.-.+.|-.|.|--|-++
T Consensus 221 Ls~rV~lsls~~~-P~~vey~i~~~g~lr~YLAPKie 256 (260)
T KOG1636|consen 221 LSDRVTLSLSSEV-PVVVEYKIEDMGHLRYYLAPKIE 256 (260)
T ss_pred ccceEEEEecCCC-cEEEEEecccCceEEEEEccccC
Confidence 5688999996554 66665543333556555544444
No 65
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
Probab=77.79 E-value=41 Score=29.55 Aligned_cols=94 Identities=15% Similarity=0.316 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhhccCCEEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCce--EEEe----cCcEEEEEehHHHH
Q 024527 141 SAEFARICKDLASIGDTVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEAT--IIEM----HEPVSLTFALRYMN 213 (266)
Q Consensus 141 s~~~~~~i~~~~~~~d~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~f~~~yL~ 213 (266)
...|++.+.-++.++..+.+.++++++.|...+ +.+.......-. .+.+ .+.+ .+.+-..++.+.|.
T Consensus 10 ~~~~~~~~~~~~kl~k~~vlrlt~~~l~~i~~~~~~~g~qvw~~l~------~~~~F~~y~i~s~~~N~I~le~~~~~L~ 83 (292)
T PF04005_consen 10 IKLFKKFVSTISKLGKRCVLRLTPERLHFISTSDDSDGIQVWCELP------QDSLFSEYRIQSASENEIYLEVNIDSLL 83 (292)
T ss_dssp HHHHHHHHHHHHHH-SEEEEEE-SSEEEEEEE-SSTT--EEEEEEE------GGGT-SEEEEE-SSSS-EEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHhhCEEEEEEeCCEEEEEEecCCCCeEEEEEEEC------hhhcCcccEEEeCCCCEEEEEEcHHHHH
Confidence 689999999999999999999999999998875 333444433211 1111 1222 24588999999999
Q ss_pred hccccCCCCceEEEEecCC--CcEEEEEEe
Q 024527 214 SFTRATPLSNTVTISLSSE--LPVVVEYKI 241 (266)
Q Consensus 214 ~~~k~~~ls~~v~l~~~~~--~Pl~l~~~i 241 (266)
..+|...-+..++|++... .|+ |.+.+
T Consensus 84 raLrs~~~a~~~~ikL~kk~~~p~-L~~~~ 112 (292)
T PF04005_consen 84 RALRSADNASSVKIKLTKKGRMPC-LSFEI 112 (292)
T ss_dssp HHHCTCSSCSEEEEEEE-S-SSSE-EEEEE
T ss_pred HHHHhhccCceeEEehhhccCCcE-EEEEE
Confidence 9999888788999999975 564 55544
No 66
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=72.31 E-value=37 Score=25.14 Aligned_cols=89 Identities=13% Similarity=0.214 Sum_probs=60.4
Q ss_pred EEehHHHHHHHHHhhccC-C--------EEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEe
Q 024527 138 RMPSAEFARICKDLASIG-D--------TVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFA 208 (266)
Q Consensus 138 ~~~s~~~~~~i~~~~~~~-d--------~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 208 (266)
.++++.|+++++...-.. + -|.|..+++.+.+.|..-.-=+...... .....++.+....
T Consensus 1 ~i~~~~l~~~i~~v~fa~s~d~~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~-----------~~~~~~~~~~iIp 69 (116)
T PF02767_consen 1 QIPAKELKEAIKKVAFAASKDESRPILNGVLFEIENNKLRLVATDGHRLAVREIEL-----------DEENEDEFSFIIP 69 (116)
T ss_dssp EEEHHHHHHHHHHHGGGS-SSTTSGGGGEEEEEEETTEEEEEEEESSEEEEEEEEE-----------EEECESEEEEEEE
T ss_pred CcCHHHHHHHHhheeEEEecCCCCceeeeEEEEEECCEEEEEEeCCceEEEEEEec-----------CcccccceEEEEe
Confidence 478899999999887753 1 5889999999998775211112222210 0111225788899
Q ss_pred hHHHHhccccCCC-CceEEEEecCCCcEEEE
Q 024527 209 LRYMNSFTRATPL-SNTVTISLSSELPVVVE 238 (266)
Q Consensus 209 ~~yL~~~~k~~~l-s~~v~l~~~~~~Pl~l~ 238 (266)
.+.|..+.|.+.- .+.|++.++++. +.++
T Consensus 70 ~k~l~~l~k~l~~~~~~v~i~~~~~~-i~f~ 99 (116)
T PF02767_consen 70 AKALKELKKLLSDEDEEVEISISDNQ-IIFK 99 (116)
T ss_dssp HHHHHHHHHHSSTTSSEEEEEEESSE-EEEE
T ss_pred chHHHHHhhhcccCCceEEEEEcCCE-EEEE
Confidence 9999999998875 579999998644 4344
No 67
>KOG3194 consensus Checkpoint 9-1-1 complex, RAD1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.94 E-value=80 Score=27.26 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhceeeEEEeCCc--eEEEEECCCCeEEEEEEec--CCCcceeeeCCcEEEEEEhhhHHHHhcccCCCce
Q 024527 12 LKKVLEAIKELVNDANFDCSATG--FSLQAMDSSHVALVALLLR--SEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDI 87 (266)
Q Consensus 12 ~k~i~~~l~~l~~~~~~~~~~~g--l~~~a~D~~r~a~v~~~l~--~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~ 87 (266)
|+.++.-+...-.......+++. +++... ..+.--.+.+| ++.-+.|+|.++....-.+..+.++.|...-+.+
T Consensus 160 L~eAlkeLD~tsevl~It~s~dk~~F~L~tf--G~lG~S~i~~Ps~s~~mEs~~~~~ev~~sy~fSli~~~tkAl~lasK 237 (279)
T KOG3194|consen 160 LHEALKELDMTSEVLQITMSPDKPYFRLSTF--GNLGSSHIDYPSDSSLMESFQCFDEVIGSYDFSLIDKITKALKLASK 237 (279)
T ss_pred HHHHHHHhhhcceeEEEEecCCCcEEEEEEe--cccCcceecCCCcHHHHHHhhhhhhhhceEeehhhHHHHHHHhhhhe
Confidence 44444444444555667777774 555554 44555566667 4467899999887788888888888888777788
Q ss_pred EEEEEcCCCCeEEEEE
Q 024527 88 ITLKADDGSDTVTFMF 103 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~ 103 (266)
+.+..++.+ .|.+++
T Consensus 238 v~lR~DerG-vLS~qi 252 (279)
T KOG3194|consen 238 VLLRMDERG-VLSVQI 252 (279)
T ss_pred EEEEEcCCc-EEEEEE
Confidence 989997654 666654
No 68
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=54.58 E-value=90 Score=23.42 Aligned_cols=37 Identities=5% Similarity=0.188 Sum_probs=31.0
Q ss_pred EEEEEehHHHHHHHHHhhccC-CEEEEEEeCCeEEEEE
Q 024527 135 AIVRMPSAEFARICKDLASIG-DTVVISVTKEGVKFST 171 (266)
Q Consensus 135 ~~i~~~s~~~~~~i~~~~~~~-d~v~i~~~~~~l~~s~ 171 (266)
....+.+..|+++.|..+.++ +.+.|.-.++++.+..
T Consensus 2 V~F~L~~edl~ql~kas~~l~l~dl~~~~~~gkivv~~ 39 (112)
T PF09116_consen 2 VEFELKAEDLQQLMKASRTLGLPDLCFVNDDGKIVVTD 39 (112)
T ss_dssp EEEEE-HHHHHHHHHHHHHCT--EEEEEEETTEEEEEE
T ss_pred eEEEecHHHHHHHHHHHHhcCCCeEEEEecCCEEEEEc
Confidence 456799999999999999997 7899999999999887
No 69
>PF01776 Ribosomal_L22e: Ribosomal L22e protein family; InterPro: IPR002671 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. Rattus norvegicus (Rat) L22 is related to ribosomal proteins from other eukaryotes and is identical in amino acid sequence to human EAP, the EBER 1 (Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) encoded RNA) associated protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1D_M 4A1B_M 4A19_M 4A18_M 3IZR_W 3IZS_W.
Probab=47.68 E-value=99 Score=23.17 Aligned_cols=62 Identities=23% Similarity=0.449 Sum_probs=36.1
Q ss_pred EEehHHHHHHHHH-------hhccCCEEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehH
Q 024527 138 RMPSAEFARICKD-------LASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALR 210 (266)
Q Consensus 138 ~~~s~~~~~~i~~-------~~~~~d~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 210 (266)
.|+...|.+.+++ ...+|+.|.++.+++.+++.++. .|+-+
T Consensus 20 I~d~~~fe~fL~erIKV~gk~gnlg~~V~i~~~~~ki~V~s~v--------------------------------~fsKr 67 (112)
T PF01776_consen 20 IMDPADFEKFLQERIKVNGKTGNLGNKVTISRDKNKITVTSEV--------------------------------PFSKR 67 (112)
T ss_dssp ---SHHHHHHHHHHHHHHSCSSSSTTTEEEEE-SSEEEEEESS--------------------------------S-SHH
T ss_pred eecHHHHHHHHHHheEeCCcccccCCeEEEEecCCEEEEEecc--------------------------------cccHH
Confidence 3556666666654 44556678887777777665432 26777
Q ss_pred HHH----hccccCCCCceEEEEecC
Q 024527 211 YMN----SFTRATPLSNTVTISLSS 231 (266)
Q Consensus 211 yL~----~~~k~~~ls~~v~l~~~~ 231 (266)
||+ .+||..+|.+-+++--++
T Consensus 68 YLKYLTKKyLKK~~LRdwlrVva~~ 92 (112)
T PF01776_consen 68 YLKYLTKKYLKKNNLRDWLRVVASS 92 (112)
T ss_dssp HHHHHHHHHHTTSSSTTTEEECCSC
T ss_pred HHHHHHHHHHhhcchhheEEEEEcC
Confidence 775 777777777765554443
No 70
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.26 E-value=2e+02 Score=25.05 Aligned_cols=154 Identities=15% Similarity=0.215 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhhhceeeEEEeCCc----------eEEEEECCCCeEE----EEEEecCCCcceeeeC----CcEEEEEE
Q 024527 10 SLLKKVLEAIKELVNDANFDCSATG----------FSLQAMDSSHVAL----VALLLRSEGFEHYRCD----RNISMGMN 71 (266)
Q Consensus 10 ~~~k~i~~~l~~l~~~~~~~~~~~g----------l~~~a~D~~r~a~----v~~~l~~~~F~~y~~~----~~~~~gi~ 71 (266)
..|.++++.+......+.++.+... +++.|.. +|.+- +.+ |+++...+|... ..+.++++
T Consensus 86 ~nl~rAlrs~~~g~~~lklKLskk~~p~~t~~~~~lt~~a~~-s~iVtHdIPIti-i~~s~w~~~~~P~vp~~dl~I~lP 163 (284)
T KOG3999|consen 86 ANLYRALRSLVGGANRLKLKLSKKQFPCLTVSVEVLTFEAKG-SRIVTHDIPITI-ISRSYWSEYQEPLVPAPDLSIQLP 163 (284)
T ss_pred HHHHHHHHHhcCcccceEEEehhccCCCceeeeeeecccccc-CceeEecCCeEE-ecHHHhhhhcCcCCCCCCcceeCC
Confidence 3556666666655555666555421 1222211 22221 333 677777777643 24677776
Q ss_pred ----hhhHHHHhcccCCCceEEEEEcCCCC-eEEEEEeCCCCCeEEEE---EEeeeecCCCCCCCCcceeeEEEEEehHH
Q 024527 72 ----LNNVSKMLKCAGNDDIITLKADDGSD-TVTFMFESPTQDKIADF---EMKLMDIDSEHLGIPEAEYHAIVRMPSAE 143 (266)
Q Consensus 72 ----l~~L~~ilk~~~~~d~l~l~~~~~~~-~l~i~~~~~~~~~~~~~---~l~li~~~~~~~~ip~~~~~~~i~~~s~~ 143 (266)
++.+...+|.+. +.+.++.+..+. ++.+.++.. ...++| ..+..+++.+. +.-..+-.+++.++++.
T Consensus 164 ~l~~lk~~vdk~Knis--~~l~~tan~~GeLqv~v~~e~~--~vtt~Fq~L~~~~~~s~s~~-edr~~e~~a~~~ld~r~ 238 (284)
T KOG3999|consen 164 DLNQLKSFVDKMKNIS--DVLNVTANKSGELQVSVSIELI--RVTTEFQDLSNPPLKSSSPV-EDRSAEARAEVALDSRD 238 (284)
T ss_pred CHHHHHHHHHHhhccc--ceEEEEEecCceEEEEEEEeeE--EEEEEhhhccCCCCCCcccc-cccChhhhhhheehhhh
Confidence 344444555543 588888854442 454444433 111122 11112222110 11112567899999999
Q ss_pred HHHHHHHhhccCCEEEEEEeCCeEEEE
Q 024527 144 FARICKDLASIGDTVVISVTKEGVKFS 170 (266)
Q Consensus 144 ~~~~i~~~~~~~d~v~i~~~~~~l~~s 170 (266)
+...+.........+.+.++++.+++.
T Consensus 239 ~~~~~~s~~~~~~~l~c~i~~~~~v~~ 265 (284)
T KOG3999|consen 239 ASSFFVSVQVFSTSLQCNITKNDSVHY 265 (284)
T ss_pred HHHHHHHhhcCcceeEEeeccCceEEE
Confidence 999999999999999998888766554
No 71
>KOG2810 consensus Checkpoint 9-1-1 complex, RAD9 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.39 E-value=55 Score=30.08 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=31.1
Q ss_pred ehHHHHHHHHHhhccCCEEEEEEeCCeEEEEEEec
Q 024527 140 PSAEFARICKDLASIGDTVVISVTKEGVKFSTRGD 174 (266)
Q Consensus 140 ~s~~~~~~i~~~~~~~d~v~i~~~~~~l~~s~~gd 174 (266)
+.+.+.+++-.++.+++.|.|.++++.+.+++-.+
T Consensus 9 nlr~lArai~sLSri~~ev~iev~~~~l~l~t~N~ 43 (394)
T KOG2810|consen 9 NLRVLARAIVSLSRIGEEVTIEVSPLGLCLKTVNE 43 (394)
T ss_pred hhHHHHHHhhhHhhhcceeEEEEcCCeeEEEeccc
Confidence 34789999999999999999999999999988653
No 72
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=33.17 E-value=49 Score=25.79 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=40.6
Q ss_pred EcChhhHHHHHHHHHh-----hhceeeEEEeCCceEEEE-ECCCCeEE-EEEEecCCCcceeeeCCc
Q 024527 6 LVQGSLLKKVLEAIKE-----LVNDANFDCSATGFSLQA-MDSSHVAL-VALLLRSEGFEHYRCDRN 65 (266)
Q Consensus 6 ~~~~~~~k~i~~~l~~-----l~~~~~~~~~~~gl~~~a-~D~~r~a~-v~~~l~~~~F~~y~~~~~ 65 (266)
+.+...+++++..... +++...-+|.+.|++..+ +..+|+++ -|=+..-.+++-|.|.+.
T Consensus 33 L~d~~~l~~~l~~Aa~~~gativ~~~~h~F~P~GvTgv~lLaESHisIHTwPE~gyaavDiftCg~~ 99 (139)
T PRK02770 33 LNDEAFLRTTLTEAAKRAGATLLNLITHRFEPQGVTALALLAESHISIHTWPESGYAAVDVFTCGDH 99 (139)
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEEEEeEEcCCCeEEEEEEecccEEEEEeCcCCCcEEEEEEecCCC
Confidence 4556666666665433 466677778889999776 67778886 444444556688888864
No 73
>PTZ00198 60S ribosomal protein L22; Provisional
Probab=31.89 E-value=2.3e+02 Score=21.54 Aligned_cols=28 Identities=14% Similarity=0.487 Sum_probs=16.6
Q ss_pred EEEEehHHHH----hccccCCCCceEEEEecC
Q 024527 204 SLTFALRYMN----SFTRATPLSNTVTISLSS 231 (266)
Q Consensus 204 ~~~f~~~yL~----~~~k~~~ls~~v~l~~~~ 231 (266)
++.|+-+||+ .+||..+|-+=+++--++
T Consensus 74 ~~~FSKRYLKYLTKKyLKK~~LRDwlRVVA~~ 105 (122)
T PTZ00198 74 TIPFSKRYLKYLTKKYLKKKQLRDFLRVVATG 105 (122)
T ss_pred cccccHHHHHHHHHHHHhhhhhhheEEEEecC
Confidence 3457778876 566666666655444333
No 74
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=31.28 E-value=57 Score=25.15 Aligned_cols=72 Identities=10% Similarity=0.180 Sum_probs=45.7
Q ss_pred EcChhhHHHHHHHHHh-----hhceeeEEEeCCceEEEE-ECCCCeEE-EEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 6 LVQGSLLKKVLEAIKE-----LVNDANFDCSATGFSLQA-MDSSHVAL-VALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 6 ~~~~~~~k~i~~~l~~-----l~~~~~~~~~~~gl~~~a-~D~~r~a~-v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
+.|...+++++..... +++...-+|.|.|++..+ +..+|+++ -|=+....+++-|.|.+. .+.....+.
T Consensus 21 L~D~~~l~~~l~~aa~~~g~tiv~~~~h~F~p~GvTgv~lLaESHisIHTwPE~gyaavDiftCg~~----~~p~~a~~~ 96 (131)
T PRK01236 21 IDRVEDIREILEGAVKYAELTKISSHYYQFNPHGATGVVLLAESHISIHTWPEYGLVTLDVYTCGDP----SKADKAFEY 96 (131)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEEEEEEEcCCCcEEEEEEeeccEEEEEeCccCCeEEEEEEecCCC----CCHHHHHHH
Confidence 4566667776665433 466777788899999876 56677775 333334446688888764 344444555
Q ss_pred hcc
Q 024527 79 LKC 81 (266)
Q Consensus 79 lk~ 81 (266)
|+.
T Consensus 97 L~~ 99 (131)
T PRK01236 97 IIK 99 (131)
T ss_pred HHH
Confidence 543
No 75
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=31.03 E-value=45 Score=25.41 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=40.7
Q ss_pred EcChhhHHHHHHHHH-----hhhceeeEEEeCCceEEEE-ECCCCeEE-EEEEecCCCcceeeeCCcE
Q 024527 6 LVQGSLLKKVLEAIK-----ELVNDANFDCSATGFSLQA-MDSSHVAL-VALLLRSEGFEHYRCDRNI 66 (266)
Q Consensus 6 ~~~~~~~k~i~~~l~-----~l~~~~~~~~~~~gl~~~a-~D~~r~a~-v~~~l~~~~F~~y~~~~~~ 66 (266)
+.+...+++++.... .+++...-+|.|.|++..+ +..+|+++ -|=+..-.+++-|.|....
T Consensus 22 L~d~~~l~~~l~~aa~~~g~tiv~~~~h~F~p~GvTgv~llaESHisIHTwPE~gyaavDiftCg~~~ 89 (123)
T PRK01706 22 LDDMYFLEHHLVEAADLSGAHVLNVSTKEFDPQGVTVLVLLSESHLSIHTYPEKNFAAIDCYTCGTTV 89 (123)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEEEEEEcCCCcEEEEEEeeccEEEEEeCccCCeEEEEEEecCCCC
Confidence 456666666665542 2477778888899999776 56678776 3444444566888888743
No 76
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=29.62 E-value=72 Score=24.89 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=45.5
Q ss_pred EcChhhHHHHHHHHHh-----hhceeeEEEeCCceEEEE-ECCCCeEE-EEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 6 LVQGSLLKKVLEAIKE-----LVNDANFDCSATGFSLQA-MDSSHVAL-VALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 6 ~~~~~~~k~i~~~l~~-----l~~~~~~~~~~~gl~~~a-~D~~r~a~-v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
+.++..+++++..... ++....-+|.|.|++..+ +..+|+++ -+=+..-.+++-|.|.....-..-++.|.+.
T Consensus 20 L~d~e~l~~~l~~Aa~~~gatil~~~~h~F~P~GvTgv~lLaESHisIHTwPE~gyaavDIftCg~~~~p~~a~~~L~~~ 99 (139)
T PRK04025 20 LGDADRIREIFLEAAKRGNMEVKASYFFKFSPTGVSGVVIVAESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQ 99 (139)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEEEEEEcCCCcEEEEEEeccceEEEEecccCCeEEEEEEecCCCCCHHHHHHHHHHH
Confidence 4566777777666443 366677778899999876 56677776 3333334466888888643223333334443
Q ss_pred hc
Q 024527 79 LK 80 (266)
Q Consensus 79 lk 80 (266)
|+
T Consensus 100 f~ 101 (139)
T PRK04025 100 FK 101 (139)
T ss_pred hC
Confidence 33
No 77
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=29.29 E-value=66 Score=23.99 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=46.1
Q ss_pred EcChhhHHHHHHHHHh-----hhceeeEEEeCCceEEEE-ECCCCeEE-EEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 6 LVQGSLLKKVLEAIKE-----LVNDANFDCSATGFSLQA-MDSSHVAL-VALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 6 ~~~~~~~k~i~~~l~~-----l~~~~~~~~~~~gl~~~a-~D~~r~a~-v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
+.+...++.++..... +++...-++.|.|++..+ +..+|+++ -|=+..-.+++-|.|... .+.....+.
T Consensus 19 L~d~~~l~~~l~~a~~~~g~ti~~~~~h~F~p~Gvt~v~llaESHisiHTwPE~gyaavDiftCg~~----~~p~~a~~~ 94 (112)
T TIGR03330 19 LDDVEFIEEILLEAAKVAGATLVASHFHKFSPGGVSGVVLLAESHISIHTWPEYGYAAVDVFTCGDH----SDPEKAFEY 94 (112)
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEEEEEEEcCCCcEEEEEEecccEEEEEeccCCCcEEEEEEecCCC----CCHHHHHHH
Confidence 4566667776665443 466677788899998776 56677776 344444556688888764 244555555
Q ss_pred hcc
Q 024527 79 LKC 81 (266)
Q Consensus 79 lk~ 81 (266)
|+.
T Consensus 95 l~~ 97 (112)
T TIGR03330 95 LVE 97 (112)
T ss_pred HHH
Confidence 554
No 78
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.11 E-value=82 Score=26.22 Aligned_cols=40 Identities=15% Similarity=0.453 Sum_probs=28.9
Q ss_pred ccCCCCceEEEEecCCCcEEEEEEeCCcEEEEEEEcccCCCCcc
Q 024527 217 RATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 260 (266)
Q Consensus 217 k~~~ls~~v~l~~~~~~Pl~l~~~i~~~g~~~~~iaPr~~~~~~ 260 (266)
+..+.++..++..++ |+++.|.-. ...+.|. +||++++.+
T Consensus 65 ~~~~~g~d~~ly~S~--plIvtF~~~-n~~lv~~-~P~~rn~re 104 (216)
T COG3110 65 KTIRLGSDRRLYISP--PLIVTFNAQ-NIDLVFF-LPRLRNERE 104 (216)
T ss_pred cccCCCCceeEeecC--CEEEEEccc-chhheee-ccccccchh
Confidence 555666788887776 999998643 3566666 999997754
No 79
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=26.05 E-value=77 Score=24.29 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=39.6
Q ss_pred EcChhhHHHHHHHHHh-----hhceeeEEEeCCceEEEE-ECCCCeEE-EEEEecCCCcceeeeCCc
Q 024527 6 LVQGSLLKKVLEAIKE-----LVNDANFDCSATGFSLQA-MDSSHVAL-VALLLRSEGFEHYRCDRN 65 (266)
Q Consensus 6 ~~~~~~~k~i~~~l~~-----l~~~~~~~~~~~gl~~~a-~D~~r~a~-v~~~l~~~~F~~y~~~~~ 65 (266)
+.+...++.++..... ++....-++.|.|++..+ +..+|+++ -|=+..-.+++-|.|...
T Consensus 20 L~d~~~l~~~l~~a~~~~g~til~~~~h~F~p~GvTgv~llaESHisIHTwPE~gyaavDiftCg~~ 86 (127)
T PRK03124 20 LNDMELIEDIMVDAALEAGAEVREVAFHKFSPQGVSGVVVISESHLTIHTWPELGYAAVDVFTCGDR 86 (127)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEEEeEEcCCCcEEEEEEeeccEEEEEeCccCCeEEEEEEecCCC
Confidence 4566677666554332 466677788899999776 56678776 343444446688888874
No 80
>PF02282 Herpes_UL42: DNA polymerase processivity factor (UL42); InterPro: IPR003202 The DNA polymerase processivity factor (UL42) of Human herpesvirus 1 (HHV-1) forms a heterodimer with UL30 to create the viral DNA polymerase complex. UL42 functions to increase the processivity of polymerisation and makes little contribution to the catalytic activity of the polymerase.; GO: 0003677 DNA binding, 0006260 DNA replication; PDB: 1DML_G.
Probab=23.79 E-value=3.8e+02 Score=21.34 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHhh---hceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEh----hhHHHHhcc
Q 024527 9 GSLLKKVLEAIKEL---VNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNL----NNVSKMLKC 81 (266)
Q Consensus 9 ~~~~k~i~~~l~~l---~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l----~~L~~ilk~ 81 (266)
...|.+++..++++ ...+.+-+.++|+.+++. --..+|.+.++.+.|++|.-..+..+-+.. +.|..++++
T Consensus 7 ~~QL~kil~~~~~~~~~~~~~F~l~~~~gl~i~~~--~~~~~V~f~i~~~~~~~y~w~~p~a~~la~~d~~~~Ll~a~~~ 84 (156)
T PF02282_consen 7 KPQLNKILAVAAPLGTSLKTTFLLFSEGGLSIHST--VGGEQVYFPIREEGFSSYPWNGPPAVFLANVDGRRSLLDAFKC 84 (156)
T ss_dssp CCHHHHHHHCCCCCTTTTSCEEEEECCCEEEEEEC--ETTEEEEEEEECGGCCCEE--SS-EEEESECCCTEETTCCCST
T ss_pred HHHHHHHHHhhcccccCCCceEEEecCCcEEEEec--cCceEEEEEcCHHHcccCccCCcchheecccchhHHHHHHhhh
Confidence 45788899988775 355666667889999872 123566778889999999976654443332 245555665
Q ss_pred cCCCc--eEEEEEcCCCCeEEEEEeCCC
Q 024527 82 AGNDD--IITLKADDGSDTVTFMFESPT 107 (266)
Q Consensus 82 ~~~~d--~l~l~~~~~~~~l~i~~~~~~ 107 (266)
.++.. .-.+........+.+.+++..
T Consensus 85 ~k~~~~~~~~v~~~g~~~~f~~~l~~~~ 112 (156)
T PF02282_consen 85 KKKKAASAKTVYGSGSGRPFSFALEGES 112 (156)
T ss_dssp TT-CCCCTTEEEEESTTSEEEEEECS-T
T ss_pred cccccccccccccccccceEEEEEcCCC
Confidence 54311 223444455556667666654
No 81
>PHA03071 late transcription factor VLTF-1; Provisional
Probab=23.54 E-value=4.3e+02 Score=21.93 Aligned_cols=145 Identities=12% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHhhhceeeEEEeCC---------ceEEEEEC------CCCeEE-EEEEecCC-----CcceeeeCCcEEEEEEh
Q 024527 14 KVLEAIKELVNDANFDCSAT---------GFSLQAMD------SSHVAL-VALLLRSE-----GFEHYRCDRNISMGMNL 72 (266)
Q Consensus 14 ~i~~~l~~l~~~~~~~~~~~---------gl~~~a~D------~~r~a~-v~~~l~~~-----~F~~y~~~~~~~~gi~l 72 (266)
++-.|+..+..++.+++.++ +-.+++.| |+|+-- +.+.+... .|..|+-.=--.-.+.+
T Consensus 73 KvK~CLcSFHnDavv~i~pd~~~~~V~LSs~hvVsvdcn~e~~p~rT~T~IsL~i~Q~KsYiFNF~kYeEKCC~RTvihL 152 (260)
T PHA03071 73 KVKSCLCSFHNDAIIEIEPDLENNLVKLSSYHVVSVDCNKELMPIRTDTSISLKIDQKKSYIFNFHKYEEKCCGRTVIHL 152 (260)
T ss_pred HhhhhhhhcCCCceEEecCCccCCeEEeecceEEEEecCCCccccccCceEEEEecCceeEEEehhhhhhhhccceEeeH
Q ss_pred hhHHHHhcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEeh-HHHHHHHHHh
Q 024527 73 NNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPS-AEFARICKDL 151 (266)
Q Consensus 73 ~~L~~ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s-~~~~~~i~~~ 151 (266)
+-|.-.+|++..-+-+.+-.+++ .+.+.--+......|+|.+.--.++- ..|..++-+.| ..|+-.=+++
T Consensus 153 elLLGFIKcIsqYQylti~f~~~--nlvlkTPG~~DtF~r~YSmTE~sp~L-------q~~sFkiaI~SlnKLrGFKKrv 223 (260)
T PHA03071 153 ELLLGFIKCISQYQYLTILFKDD--NIILKTPGNLDTFSREYSMTECSPEL-------QKFSFKIAISSLNKLRGFKKRV 223 (260)
T ss_pred HHHHHHHHHhhhceEEEEEEcCC--cEEEcCCCCccceeeeeehhhCCHHH-------hcceeEeeeeehhhhhcchhee
Q ss_pred hccCCEEEEEEeCCeE
Q 024527 152 ASIGDTVVISVTKEGV 167 (266)
Q Consensus 152 ~~~~d~v~i~~~~~~l 167 (266)
..+-..|....++|-+
T Consensus 224 ~vFEtrivMD~ddNil 239 (260)
T PHA03071 224 NVFETRIVMDNDDNIL 239 (260)
T ss_pred EEEEEEEEEeCCCCEe
No 82
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=20.41 E-value=3.6e+02 Score=21.00 Aligned_cols=39 Identities=26% Similarity=0.594 Sum_probs=28.8
Q ss_pred EEEEehHHHHHHHHHhhccCCEEEEEEeCCeEEEEEEecc
Q 024527 136 IVRMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDI 175 (266)
Q Consensus 136 ~i~~~s~~~~~~i~~~~~~~d~v~i~~~~~~l~~s~~gd~ 175 (266)
-..++.+.|.++++++...|+ |++.+..+..++..+|..
T Consensus 21 ~~~~~g~~f~~ll~~l~~wG~-vt~Iv~~~~~I~E~kg~~ 59 (141)
T PF06228_consen 21 VTFLPGERFDELLEELAGWGE-VTFIVHTDGAIFEVKGPL 59 (141)
T ss_dssp EEEEEGGGHHHHHHHHTTSSE-EEEEEE-SSEEEEEEEES
T ss_pred EEEccHHHHHHHHHHhhccCc-eEEEEEcCCEEEEEecCC
Confidence 456777999999999999997 666666666666666543
Done!