Query 024527
Match_columns 266
No_of_seqs 115 out of 777
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 09:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p91_A Proliferating cell nucl 100.0 3.5E-58 1.2E-62 398.2 34.7 258 1-262 6-264 (265)
2 3fds_C DNA polymerase sliding 100.0 6E-58 2E-62 392.8 32.4 247 1-255 1-249 (249)
3 3lx2_A DNA polymerase sliding 100.0 5.5E-55 1.9E-59 377.1 36.3 250 1-259 2-252 (259)
4 3fds_D DNA polymerase sliding 100.0 3.7E-54 1.3E-58 369.2 34.6 244 1-255 1-245 (245)
5 1plq_A Proliferating cell nucl 100.0 1.9E-53 6.4E-58 367.5 37.2 258 1-259 1-258 (258)
6 3k4x_A PCNA, proliferating cel 100.0 3.1E-54 1.1E-58 422.3 35.8 260 1-261 7-266 (798)
7 1u7b_A PCNA, cyclin, prolifera 100.0 4.7E-53 1.6E-57 365.5 37.7 259 1-259 1-259 (261)
8 3ifv_A PCNA; processivity fact 100.0 7.1E-55 2.4E-59 374.0 24.6 242 1-258 1-247 (247)
9 3k4x_A PCNA, proliferating cel 100.0 4.3E-53 1.5E-57 414.2 34.5 258 1-259 541-798 (798)
10 2zvv_A PCNA 1, proliferating c 100.0 9E-52 3.1E-56 360.3 36.6 256 1-256 21-276 (276)
11 3aiz_A DNA polymerase sliding 100.0 1.7E-49 5.7E-54 340.8 29.2 248 1-255 1-248 (248)
12 1iz5_A Proliferating cell nucl 100.0 6.8E-48 2.3E-52 331.0 35.1 248 1-257 2-249 (249)
13 3a1j_C Cell cycle checkpoint p 100.0 8.1E-49 2.8E-53 339.2 28.5 241 1-254 4-262 (263)
14 2ijx_A DNA polymerase sliding 100.0 9.2E-47 3.2E-51 323.0 32.1 244 2-255 1-244 (244)
15 1ud9_A DNA polymerase sliding 100.0 5.8E-47 2E-51 324.5 29.8 245 2-256 1-245 (245)
16 1rwz_A DNA polymerase sliding 100.0 1E-45 3.5E-50 316.8 33.0 243 3-258 2-245 (245)
17 3aiz_C DNA polymerase sliding 100.0 1.5E-45 5.3E-50 315.8 32.7 244 1-256 2-246 (246)
18 3a1j_B HHUS1, checkpoint prote 100.0 1.1E-38 3.8E-43 277.8 30.5 250 2-252 4-278 (281)
19 3a1j_A Cell cycle checkpoint c 100.0 3E-39 1E-43 279.6 23.2 243 2-253 3-264 (266)
20 3g65_A Cell cycle checkpoint c 100.0 8E-30 2.7E-34 222.8 26.5 256 3-265 4-276 (296)
21 3d1g_A DNA polymerase III subu 99.9 5.8E-26 2E-30 204.6 25.4 214 8-253 131-363 (366)
22 2avt_A DNA polymerase III beta 99.9 2.5E-25 8.4E-30 201.3 25.9 216 9-255 139-377 (378)
23 3t0p_A DNA polymerase III, bet 99.9 2.2E-25 7.4E-30 201.1 24.9 216 9-257 132-368 (371)
24 1vpk_A DNA polymerase III, bet 99.9 1.3E-24 4.5E-29 196.7 24.0 215 8-255 142-377 (378)
25 3p16_A DNA polymerase III subu 99.9 2E-24 6.8E-29 196.6 24.6 223 8-256 146-407 (408)
26 3pge_A SUMO-modified prolifera 99.9 6.5E-21 2.2E-25 155.7 14.6 95 164-259 106-200 (200)
27 3l0w_B Monoubiquitinated proli 99.8 2E-19 6.7E-24 144.8 14.4 92 164-256 78-169 (169)
28 1vpk_A DNA polymerase III, bet 99.4 1.5E-10 5.2E-15 104.4 25.9 199 9-242 19-239 (378)
29 3p16_A DNA polymerase III subu 98.8 4.9E-06 1.7E-10 75.5 25.7 193 9-232 25-237 (408)
30 3t0p_A DNA polymerase III, bet 98.7 7.1E-06 2.4E-10 73.5 24.9 192 9-232 8-222 (371)
31 3d1g_A DNA polymerase III subu 98.7 2.6E-05 9E-10 69.7 28.1 193 9-232 7-221 (366)
32 2avt_A DNA polymerase III beta 98.7 1.9E-05 6.6E-10 70.9 26.2 206 1-232 1-229 (378)
33 1iz5_A Proliferating cell nucl 97.9 0.0005 1.7E-08 57.8 15.9 96 8-104 137-232 (249)
34 3lx2_A DNA polymerase sliding 97.9 0.00042 1.4E-08 58.8 15.4 112 9-121 138-250 (259)
35 1u7b_A PCNA, cyclin, prolifera 97.8 0.00077 2.6E-08 57.0 14.8 113 4-120 137-256 (261)
36 1plq_A Proliferating cell nucl 97.8 0.00099 3.4E-08 56.3 15.4 108 9-120 141-255 (258)
37 3fds_C DNA polymerase sliding 97.8 0.0012 4.2E-08 55.6 15.6 103 9-113 140-243 (249)
38 3p91_A Proliferating cell nucl 97.7 0.0012 4.2E-08 56.1 15.4 111 9-123 145-261 (265)
39 3aiz_C DNA polymerase sliding 97.7 0.0011 3.9E-08 55.5 14.9 93 8-104 135-230 (246)
40 2zvv_A PCNA 1, proliferating c 97.7 0.00091 3.1E-08 57.2 14.5 106 9-117 161-273 (276)
41 3a1j_A Cell cycle checkpoint c 97.7 0.00037 1.3E-08 59.4 11.5 110 8-119 148-265 (266)
42 3fds_D DNA polymerase sliding 97.7 0.0013 4.4E-08 55.2 14.7 105 8-114 136-240 (245)
43 1ud9_A DNA polymerase sliding 97.6 0.0011 3.7E-08 55.6 13.4 95 8-104 135-229 (245)
44 1rwz_A DNA polymerase sliding 97.6 0.0031 1.1E-07 52.8 15.6 109 8-120 134-243 (245)
45 2ijx_A DNA polymerase sliding 97.6 0.0014 4.9E-08 54.8 13.1 95 8-104 135-229 (244)
46 3a1j_C Cell cycle checkpoint p 97.6 0.00045 1.5E-08 58.8 10.1 101 3-105 143-245 (263)
47 3ifv_A PCNA; processivity fact 97.5 0.0022 7.5E-08 53.9 13.2 108 9-120 135-245 (247)
48 3aiz_A DNA polymerase sliding 97.5 0.0023 7.8E-08 53.6 13.1 94 8-104 139-233 (248)
49 3g65_A Cell cycle checkpoint c 97.4 0.00063 2.2E-08 58.9 9.1 112 8-121 148-267 (296)
50 1dml_A DNA polymerase processi 95.3 0.33 1.1E-05 41.3 12.4 159 9-169 37-212 (319)
51 3a1j_B HHUS1, checkpoint prote 94.5 0.61 2.1E-05 39.6 12.4 110 4-118 159-279 (281)
52 3pge_A SUMO-modified prolifera 86.4 10 0.00035 30.3 11.1 81 33-115 107-192 (200)
53 1b77_A GP45, protein (sliding 85.7 13 0.00045 30.3 19.8 120 34-172 26-152 (228)
54 3l0w_B Monoubiquitinated proli 68.6 38 0.0013 26.0 11.2 78 33-112 79-161 (169)
55 3izc_W 60S ribosomal protein R 68.6 3.6 0.00012 30.1 2.9 33 139-171 28-67 (121)
56 4a18_M RPL22, ribosomal protei 54.2 33 0.0011 24.8 5.8 69 139-239 30-109 (118)
57 2kl8_A OR15; structural genomi 36.4 80 0.0027 20.1 4.9 32 142-173 17-48 (85)
58 1smp_I Erwinia chrysanthemi in 26.3 62 0.0021 22.8 3.4 31 17-47 45-77 (101)
59 4hhu_A OR280; engineered prote 20.8 2E+02 0.0067 20.8 5.2 32 142-173 18-49 (170)
60 1dml_A DNA polymerase processi 20.5 1.9E+02 0.0067 24.5 5.9 169 6-174 102-306 (319)
No 1
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=100.00 E-value=3.5e-58 Score=398.20 Aligned_cols=258 Identities=34% Similarity=0.661 Sum_probs=232.8
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+|+.||++++++++++++|+|+++++||+++|+|++|+|++.+.+++++|++|+|++++++|++++.|.|+||
T Consensus 6 mf~a~~~~a~~lk~ii~ai~~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~d~~~~igi~l~~L~kiLk 85 (265)
T 3p91_A 6 AFHAKFKEAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLKPITLGINLTHLSKILK 85 (265)
T ss_dssp SEEEEESCHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSSEEEEEECGGGEEEEECSSCEEEEEEHHHHHHHHT
T ss_pred EEEEEECchHHHHHHHHHHHHHhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhhceEEEeCCCeEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccC-CEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIG-DTVV 159 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~-d~v~ 159 (266)
+++++|.++|.+++++++|.|.+++.+.+++ .|.+++++++++++.+|+.+|+++++|++++|+++|++++.+| +.|+
T Consensus 86 ~~~~~d~v~i~~~~~~~~l~~~~e~~~~~~i-~~~lrLid~~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~s~d~V~ 164 (265)
T 3p91_A 86 ALDNDCGLILDVKKVDDAVLSITSEGTNKTM-KFGLNLVDIEAESVEIPELQSDAIITLSSAEFLKITKDFSALGDDSIT 164 (265)
T ss_dssp TSCTTSEEEEEECSSSSEEEEEEEC--CCEE-EEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHHHCCSEEE
T ss_pred hcCCCCEEEEEEcCCCCeEEEEEEeCCCceE-EEEEEecccCcccCCCCCCCccEEEEEEHHHHHHHHHHHHhCCCCEEE
Confidence 9999999999999888899999998765555 9999999999999999988999999999999999999999999 9999
Q ss_pred EEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEE
Q 024527 160 ISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEY 239 (266)
Q Consensus 160 i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~ 239 (266)
|.+++++++|+++||.|++++.++.+.+.+ +..+.++++++++++|+++||++++|+++++++|+|+|+++.||+++|
T Consensus 165 i~~~~~~v~~ss~gd~G~~~~~l~~~~~~~--~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~ls~~V~i~~~~~~Pl~l~~ 242 (265)
T 3p91_A 165 IGCTKNEVTLTTKGAMCETCMTLSALENVD--SNGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEF 242 (265)
T ss_dssp EEECSSEEEEEEECSSCEEEEEEEC---------CCEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSSCEEEEE
T ss_pred EEEECCEEEEEEEecCceEEEEEecCCCCC--CceEEEEcCCcEEEEEEHHHHHHhhcccccCCEEEEEeCCCccEEEEE
Confidence 999999999999999999999996432111 233458889999999999999999999999999999999999999999
Q ss_pred EeCCcEEEEEEEcccCCCCcccC
Q 024527 240 KIAEMGYIRFYLAPKIEEDEDET 262 (266)
Q Consensus 240 ~i~~~g~~~~~iaPr~~~~~~~~ 262 (266)
.+ ++|+++||||||+++||+.+
T Consensus 243 ~i-~~g~~~f~lAPri~~~~~~~ 264 (265)
T 3p91_A 243 KG-EACVLKFYLAPKFDEEDEPQ 264 (265)
T ss_dssp EE-TTEEEEEEECCBC-------
T ss_pred EE-CCEEEEEEEcCCCCCccCCC
Confidence 99 77999999999999887554
No 2
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=100.00 E-value=6e-58 Score=392.84 Aligned_cols=247 Identities=13% Similarity=0.260 Sum_probs=233.7
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++++|+.||+++++++.++++++|+++++||+++|||++|+||+++.|++++|++|+|++++++|||++.|.||||
T Consensus 1 Mf~a~~~~a~~lk~ii~ai~~lv~e~~~~~~~~Gi~l~amD~s~valv~l~l~~~~F~~Y~~d~~~~~gvnl~~l~kiLk 80 (249)
T 3fds_C 1 MVKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILS 80 (249)
T ss_dssp CCEEEESCHHHHHHHHHHHTTTCSSEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEECHHHHHHHHT
T ss_pred CEEEEeCchHHHHHHHHHHHHHhCeEEEEEcCCeEEEEEECCCcEEEEEEEECHHhCeEEECCCCeEEEEEHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEE
Q 024527 81 CAG-NDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVV 159 (266)
Q Consensus 81 ~~~-~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~ 159 (266)
+++ ++| +|++++++++|.|.+++.+.|++++|.+++++.+.+++++|+.+|+++++|++++|+++|++++.+||.|+
T Consensus 81 ~~~~~~d--~l~~~~~~~~l~i~~e~~~~~~~~~~~l~l~d~~~e~~~~p~~e~~~~v~m~s~~f~~~~~dl~~~sd~v~ 158 (249)
T 3fds_C 81 KASSKKA--TIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMR 158 (249)
T ss_dssp TCCCSCE--EEEEEECSSEEEEEEEETTTCCEEEEEEECEECCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCSEEE
T ss_pred hhCCCCC--EEEEecCCCEEEEEEEeCCCCEEEEEEEECCCCccccCCCCCCcceEEEEEEHHHHHHHHHHHHHhCCEEE
Confidence 999 888 55666667799999998877899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccc-cCCCCceEEEEecCCCcEEEE
Q 024527 160 ISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTR-ATPLSNTVTISLSSELPVVVE 238 (266)
Q Consensus 160 i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k-~~~ls~~v~l~~~~~~Pl~l~ 238 (266)
|.+++++++|++.||.|+.+..++.. ++.+.++++++++.+|+++||++++| +++++++|+|++++++||+++
T Consensus 159 i~~~~~~~~f~~~gd~~~~~~~~~~~------~~l~~~~~~~~~~~~fsl~yL~~~~K~a~~ls~~V~i~~~~~~Pl~l~ 232 (249)
T 3fds_C 159 ISTEEDKIKIEAGEEGKRYVAFLMKD------KPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKID 232 (249)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEEET------BEESEEEESSCCEEEEEHHHHHHHHHTTTTCCSCEEEEECTTCCEEEE
T ss_pred EEEECCEEEEEEEecCcEEEEEEcCC------CCcEEEEcCCceEEEEEHHHHHHHHhhhcccCCEEEEEecCCcCEEEE
Confidence 99999999999999999999988542 23446788999999999999999999 999999999999999999999
Q ss_pred EEeCCcEEEEEEEcccC
Q 024527 239 YKIAEMGYIRFYLAPKI 255 (266)
Q Consensus 239 ~~i~~~g~~~~~iaPr~ 255 (266)
|.++++|+++||||||+
T Consensus 233 y~i~~~G~l~f~lAPri 249 (249)
T 3fds_C 233 VEAVSGGHMIFWIAPRL 249 (249)
T ss_dssp EECTTSCEEEEEECCBC
T ss_pred EEeCCCcEEEEEEeccC
Confidence 99998899999999996
No 3
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=100.00 E-value=5.5e-55 Score=377.15 Aligned_cols=250 Identities=20% Similarity=0.388 Sum_probs=231.7
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+|+.||++++++++++++|+|+++++||+++|+|++|+|++.+.+++++|++|+|++++++|++++.|.|+||
T Consensus 2 ~f~a~~~~a~~lk~ii~ai~~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~~~igi~l~~L~kiLk 81 (259)
T 3lx2_A 2 TFEIVFDSAREFESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAFDLKRFLKVLK 81 (259)
T ss_dssp CEEEEESCHHHHHHHHHHHHTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHT
T ss_pred eEEEEECcHHHHHHHHHHHHHHhceEEEEEecCeEEEEEECCCCEEEEEEEEChHhcEEEEcCCCEEEEEEHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
+++++|.++|+ .+++++|.|.+++.+ ++.|.++++|++++++++|+.+|+++++|++++|+++|+|++.+|+.|+|
T Consensus 82 ~~~~~d~v~i~-~~~~~~l~~~~e~~~---~~~~~~rLid~~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~sd~V~i 157 (259)
T 3lx2_A 82 LARSRDTLVLR-KGGENFLEVGLLGDE---NTWFKLPLIDANTPEIEIPSLPWTVKAVVLAGALKRAVKAAKLVSDSIYF 157 (259)
T ss_dssp TCCTTCEEEEE-ECSSSEEEEEEESSS---EEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCSEEEE
T ss_pred hcCCCCEEEEE-ECCCCEEEEEEecCc---eEEEEEEeeccCcccCCCCCCceeEEEEEEHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999 555679999999863 67999999999999999998899999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEec-CcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMH-EPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEY 239 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~ 239 (266)
.+++++++|+++||.|+++++++.. ++..+.++++ ++++++|+++||++++|+++++++|+|+|++++||+++|
T Consensus 158 ~~~~~~v~~ss~gd~G~~~~~l~~~-----~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~~s~~V~l~~~~~~Pl~l~~ 232 (259)
T 3lx2_A 158 MATPEKLTFKAEGNDSEVRTVLTME-----DPGLLDLEHKMTKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKY 232 (259)
T ss_dssp EECSSCEEEEEECSSCEEEEEECTT-----STTEEEEEESSSCEEEEEEHHHHHHHHSSSCTTSEEEEEECTTSCEEEEE
T ss_pred EEECCEEEEEEEecCcEEEEEEcCC-----CCceEEEEecCceEEEEEEHHHHHhhhccccCCCeEEEEeCCCCCEEEEE
Confidence 9999999999999999999999521 2233458888 999999999999999999998999999999999999999
Q ss_pred EeCCcEEEEEEEcccCCCCc
Q 024527 240 KIAEMGYIRFYLAPKIEEDE 259 (266)
Q Consensus 240 ~i~~~g~~~~~iaPr~~~~~ 259 (266)
+++++|++.||||||+++.-
T Consensus 233 ~i~~~g~~~y~laP~~~~~~ 252 (259)
T 3lx2_A 233 MVRDAGEVSFLIAPRVEEGR 252 (259)
T ss_dssp EETTTEEEEEEECCCC----
T ss_pred EeCCCeEEEEEEccccCCCc
Confidence 99878999999999998653
No 4
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=100.00 E-value=3.7e-54 Score=369.17 Aligned_cols=244 Identities=22% Similarity=0.464 Sum_probs=225.1
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEE-EEEEhhhHHHHh
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNIS-MGMNLNNVSKML 79 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~-~gi~l~~L~~il 79 (266)
||+|++.+|+.||+++++++.++++|+|+++++||+++|+|++|+|++.+.++++.|++|+|+.+.. +|++++.|.|+|
T Consensus 1 m~~a~~~~a~~~k~i~~ai~~i~~~~~~~~~~~gl~~~A~D~~rval~~~~l~~~~F~~y~~~~~~~i~gi~l~~l~kiL 80 (245)
T 3fds_D 1 MMKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDIL 80 (245)
T ss_dssp CEEEEESCHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhceEEEEEcCCeEEEEEECCCCEEEEEEEEChHhCEEEEeCCccEEEEEEHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888 999999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEE
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVV 159 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~ 159 (266)
|+++++|.++|+++ ++++.|.+++.. +|.|.++++|+++|++++|+.+|+++++|++++|+++|+|++.+|+.|+
T Consensus 81 ~~~~~~d~v~i~~~--~~~l~~~~~~~~---~~~~~~rLid~~~~~~~iP~~~~~~~v~~~s~~f~~~i~~~~~~s~~V~ 155 (245)
T 3fds_D 81 KRVLKDDTLILSSN--ESKLTLTFDGEF---TRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLN 155 (245)
T ss_dssp TTCCTTCEEEEEEC--SSEEEEEEESSS---EEEEEEECCCCCCCCC----CCCSEEEEEEHHHHHHHHHHHTTTCSEEE
T ss_pred HhcCCCCEEEEEEe--CCEEEEEEecCc---eEEEEEEeecCCcccCCCCCcceEEEEEEEHHHHHHHHHHHHhcCCEEE
Confidence 99998999999994 459999999874 6899999999999999999889999999999999999999999999999
Q ss_pred EEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEE
Q 024527 160 ISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEY 239 (266)
Q Consensus 160 i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~ 239 (266)
|.+++++++|+++||.|+++++++.. .+..+.++ +++++++|+++||++++|+++++++|+|+|+++.|+.++|
T Consensus 156 i~~~~~~l~~s~~gd~g~~~~~l~~~-----~~~~~~~~-~e~~~~~F~~~YL~~~~ka~~~s~~V~i~~~~~~Pl~l~~ 229 (245)
T 3fds_D 156 IHSKENKLYFEVIGDLSTAKVELSTD-----NGTLLEAS-GADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRF 229 (245)
T ss_dssp EEEETTEEEEEEECSSCEEEEEECTT-----SSSCSEEE-ECCCEEEEEHHHHHHGGGGGGTCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCEEEEEEEecCcEEEEEEcCC-----CCceEEEe-cceEEEEEEHHHHHHHhhhcccCCEEEEEecCCccEEEEE
Confidence 99999999999999999999999531 12223466 8999999999999999999999999999999999999999
Q ss_pred EeCCcEEEEEEEcccC
Q 024527 240 KIAEMGYIRFYLAPKI 255 (266)
Q Consensus 240 ~i~~~g~~~~~iaPr~ 255 (266)
.++++|+++||||||+
T Consensus 230 ~i~~~g~~~y~laPr~ 245 (245)
T 3fds_D 230 KLPQEGYGDFYIAPRA 245 (245)
T ss_dssp ECSTTCEEEEEECCCC
T ss_pred EeCCCeEEEEEEeecC
Confidence 9988899999999996
No 5
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=100.00 E-value=1.9e-53 Score=367.46 Aligned_cols=258 Identities=38% Similarity=0.778 Sum_probs=242.3
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+++.||++++++++++++|+|+++++||+++|+|++|+|++.+.++++.|++|+|++++.+|++++.|.++||
T Consensus 1 mf~a~~~~~~~~~~i~~~i~~i~~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~F~~y~~~~~~~~~i~l~~l~kil~ 80 (258)
T 1plq_A 1 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILR 80 (258)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHHTT
T ss_pred CeEEEecchHHHHHHHHHHHHHhceEEEEEcCCceEEEEECCCcEEEEEEEECHHhCcEEEeCCCeEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
++++++.++|.++++++++.|.+++.+.++++.|.++++++++|++.+|+.+|+++++|+++.|+++|+|++.+|+.|+|
T Consensus 81 ~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~~~~~~ip~~~~~~~i~~~~~~l~~av~r~~~~s~~v~i 160 (258)
T 1plq_A 81 CGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINI 160 (258)
T ss_dssp CSTTTSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCCCCCCCCCCSCCSEEEEEEHHHHHHHHHHHHTTCSEEEE
T ss_pred cCCCCCEEEEEecCCCCeEEEEEEcCCCCeEEEEEEEcccCCcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcCCEEEE
Confidence 99888899999988778999999998788899999999999999999998899999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.++++.+.|+++||.|+++++++...+.+++++.+.++++++++++|+.+||.+++|+++++++|+|+|+++.|+.++|.
T Consensus 161 ~~~~~~l~ls~~~d~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~f~~~yL~~~lka~~~s~~V~i~~~~~~Pl~l~~~ 240 (258)
T 1plq_A 161 MITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 240 (258)
T ss_dssp EEETTEEEEEEECSSCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEE
T ss_pred EEECCEEEEEEEccCceEEEEEecCCCCCCCccceEEecCCcEEEEEEHHHHHHHhccccCCceEEEEECCCCCEEEEEE
Confidence 99999999999999999999997554444444555688899999999999999999999999999999999999999998
Q ss_pred eCCcEEEEEEEcccCCCCc
Q 024527 241 IAEMGYIRFYLAPKIEEDE 259 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~~~~ 259 (266)
++ +|++.||||||+++||
T Consensus 241 ~~-~~~~~y~l~P~~~~e~ 258 (258)
T 1plq_A 241 LK-SGFLQFFLAPKFNDEE 258 (258)
T ss_dssp ET-TEEEEEEECCCSSSCC
T ss_pred EC-CeEEEEEECCcCCCCC
Confidence 87 6899999999999664
No 6
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-54 Score=422.27 Aligned_cols=260 Identities=38% Similarity=0.770 Sum_probs=243.2
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+|+.||+++++++.++++++|+++++||+++|||++|++|+++.+++++|++|+|++++++|||++.|.||||
T Consensus 7 Mf~a~~~~a~~~k~ii~ai~~lv~e~~~~~t~~Gi~l~amD~s~v~lv~l~l~~~~F~~Y~~d~~~~~Gvnl~~l~kiLk 86 (798)
T 3k4x_A 7 MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILR 86 (798)
T ss_dssp -CEEEESCHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSSCCEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHS
T ss_pred EEEEEecchHHHHHHHHHHHHHhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhhCeEEecCCCeEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
+++++|.++|++++++++|.|.+++.+.+++++|.+++++++.+++++|+.+|++++.|+|++|+++|++++.+||.|+|
T Consensus 87 ~~~~~d~l~l~~~~~~~~l~i~~e~~~~~~~~~~~l~l~d~~~e~l~ip~~e~~~~v~m~s~~f~~~~~dl~~~sd~v~i 166 (798)
T 3k4x_A 87 CGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINI 166 (798)
T ss_dssp SSCTTSCEEEECCSSCSEEEEEEECSSSSEEEEEEEECBCCCCCCCCCCCSCCSEEEEEEHHHHHHHHHHHTTTCSEEEE
T ss_pred hcCCCCEEEEEEcCCCCeEEEEEEeCCCceEEEEEEEeeccCcccCCCCCCceeEEEEEEHHHHHHHHHHHHhhCCEEEE
Confidence 99999999999988888999999998888899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.+++++++|+++||.|++++.++.+.+.++++..+.++++++++.+|+++||+.++|++++|++|+|++++++||+++|.
T Consensus 167 ~~~~~~~~~s~~Gd~g~~~v~~~~~~~~~~~~~~~~i~~~e~~~~~ysl~yL~~~~Ka~~ls~~V~l~~~~~~PL~l~y~ 246 (798)
T 3k4x_A 167 MITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 246 (798)
T ss_dssp EEETTEEEEEEECSSEEEEEEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEE
T ss_pred EEECCEEEEEEEecCcEEEEEEcCCCCCCCccceEEEEeCCceeEEEEHHHHHHhhcccccCCEEEEEeCCCCcEEEEEE
Confidence 99999999999999999999998765556656667799999999999999999999999999999999999999999999
Q ss_pred eCCcEEEEEEEcccCCCCccc
Q 024527 241 IAEMGYIRFYLAPKIEEDEDE 261 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~~~~~~ 261 (266)
+ ++|+++||||||+++|++.
T Consensus 247 i-~~G~l~f~lAPri~~~~~~ 266 (798)
T 3k4x_A 247 L-KSGFLQFFLAPKFNDEGSN 266 (798)
T ss_dssp E-TTEEEEEEECCC-------
T ss_pred E-CCeEEEEEEccCCCCccch
Confidence 9 7899999999999988765
No 7
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=100.00 E-value=4.7e-53 Score=365.49 Aligned_cols=259 Identities=65% Similarity=1.085 Sum_probs=238.2
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+++.||++++++++++++|+|+++++||+++|+|++|+|++.+.++++.|++|+|++++.+|++++.|.++||
T Consensus 1 mf~a~~~~~~~~k~i~~~i~~il~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l~kil~ 80 (261)
T 1u7b_A 1 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILK 80 (261)
T ss_dssp CEEEEESCTHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHT
T ss_pred CeEEEecchHHHHHHHHHHHHHhcEEEEEEeCCceEEEEECCCCEEEEEEEECHHhCeEEEeCCCeEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
++++++.++|.++++++++.|.+++.+.++++.|.+++++++++++.+|+.+|+++++|+++.|+++|+|++.+|+.|+|
T Consensus 81 ~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~~~~~~iP~~~~~~~i~~~~~~l~~ai~r~~~~s~~v~i 160 (261)
T 1u7b_A 81 CAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVI 160 (261)
T ss_dssp TSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCCCCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEE
T ss_pred cCCCCCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEECccCCcccCCCCCCcccEEEEEEHHHHHHHHHHHHhcCCEEEE
Confidence 99888899999987778999999998888899999999999999999998899999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.++++.+.|++.||.|++++++....+.+++++.+.++++++++++|+.+||.+++|+++++++|+|+|+++.|+.++|.
T Consensus 161 ~~~~~~l~ls~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~f~~~yL~~~lka~~~s~~V~i~~~~~~P~~l~~~ 240 (261)
T 1u7b_A 161 SCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK 240 (261)
T ss_dssp EEETTEEEEEEEETTEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECTTSCEEEEEE
T ss_pred EEECCEEEEEEEecCceEEEEEecCCCCCCCccceEEecCCcEEEEEeHHHHHHHhCcccCCCeEEEEECCCCCEEEEEE
Confidence 99999999999999999999996544444455556688899999999999999999999999999999999999999999
Q ss_pred eCCcEEEEEEEcccCCCCc
Q 024527 241 IAEMGYIRFYLAPKIEEDE 259 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~~~~ 259 (266)
++++|++.||||||+++||
T Consensus 241 ~~~~~~~~y~l~P~i~~e~ 259 (261)
T 1u7b_A 241 IADMGHLKYYLAPKIEDEE 259 (261)
T ss_dssp ETTTEEEEEEECCBC----
T ss_pred eCCCcEEEEEECCcCcccC
Confidence 8756899999999999665
No 8
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=100.00 E-value=7.1e-55 Score=373.99 Aligned_cols=242 Identities=26% Similarity=0.498 Sum_probs=201.6
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++ +|+.||++++++++++++|+|+++++||+++|+|++|+|++.+.+++++|++|+|++++ +|++++.|.|+|+
T Consensus 1 Mf~a~~-~a~~~k~i~~ai~~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~v-~g~~l~~l~kiL~ 78 (247)
T 3ifv_A 1 MFKAIV-SAATLRDALDSVSVLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGGV-IGVNLSRLEEVAG 78 (247)
T ss_dssp -CCEEE-CHHHHHHHHHHHHTTCSSEEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC-----C-EEECHHHHHHHHT
T ss_pred CeEEEE-cHHHHHHHHHHHHHHhcEEEEEEeCCeEEEEEECCccEEEEEEEEchhcCeEEEccCcE-EEEEHHHHHHHHh
Confidence 999999 99999999999999999999999999999999999999999999999999999999888 9999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCC--CCCCcceeeEEEEEehHHHHHHHHHhhccCCEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEH--LGIPEAEYHAIVRMPSAEFARICKDLASIGDTV 158 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~--~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v 158 (266)
+++++|.++|.+++++++|.|++++. .|.++|+|+++++ ..+|+.+|+++++|++++|+++|+|++.+|+.|
T Consensus 79 ~~~~~d~v~i~~~~~~~~l~~~~~~~------~~~~rLid~~~~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~sd~V 152 (247)
T 3ifv_A 79 MAGAGDLIHLTLDEETRKLNIRIDGL------SYTLALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDHI 152 (247)
T ss_dssp TC----CEEECC-------EEEETTE------EEEC---CTTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHHCSEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEEeCc------EEEEEeecccccccCCCCCCCCceEEEEEEHHHHHHHHHHHHhhCCEE
Confidence 99988999999988778999999875 8999999999986 689988999999999999999999999999999
Q ss_pred EEEEe--CCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEE
Q 024527 159 VISVT--KEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVV 236 (266)
Q Consensus 159 ~i~~~--~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~ 236 (266)
+|.++ ++.++++++||.|++++.++. ++.+.++ +++++++|+++||++++|+++++++|+|+|++++||+
T Consensus 153 ~i~~~~~~~~~~~s~~gd~g~~~~~l~~-------~~~~~~~-~e~~~~~F~~~YL~~~~Ka~~~s~~V~i~~~~~~Pl~ 224 (247)
T 3ifv_A 153 RLRVDGAEETFHIEAEGDTDDVDLSLPP-------ADLISIE-AGAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVK 224 (247)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECG-------GGCSEEE-ECCCEEEEEHHHHHHHHHHSCTTCEEEEEECBSSCEE
T ss_pred EEEEECCCCEEEEEEEecceEEEEEECC-------CceEEEe-cCeEEEEEeHHHHHHhhhhccCCCEEEEEecCCccEE
Confidence 99999 889999999999999999942 2233466 8999999999999999999999999999999999999
Q ss_pred EEEEeC-CcEEEEEEEcccCCCC
Q 024527 237 VEYKIA-EMGYIRFYLAPKIEED 258 (266)
Q Consensus 237 l~~~i~-~~g~~~~~iaPr~~~~ 258 (266)
++|.++ ++|+++||||||+++|
T Consensus 225 l~~~i~~~~g~~~~~lAPri~~~ 247 (247)
T 3ifv_A 225 LHYQIAEGMGTITYMLAPRIQSD 247 (247)
T ss_dssp EEEEEGGGTEEEEEEECCC----
T ss_pred EEEEEcCCcEEEEEEEeecccCC
Confidence 999998 4699999999999975
No 9
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-53 Score=414.20 Aligned_cols=258 Identities=38% Similarity=0.773 Sum_probs=243.9
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++++++.||++++++++++++|+|+++++||+++|||++|++++.+.|+++.|++|+|++++++|+|++.|.|+||
T Consensus 541 mfea~l~~~~~lk~ii~ai~~iv~~~~~~~~~~Gi~~~a~D~s~valv~~~L~~~~F~~y~cd~~i~iG~nL~~L~kiLk 620 (798)
T 3k4x_A 541 ALEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILR 620 (798)
T ss_dssp -CEEEESSHHHHHHHHHTTTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEECSSCEEEEEEHHHHHHHHH
T ss_pred eEEEEcCchHHHHHHHHHHHHHhCcEEEEEECCeEEEEEECCCcEEEEEEEeccccCceEEcCCCeEEEEEHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
+++++|.|+|++++++++|.|++++.+.++++.|+++|+|++++++.+|+.+|+++++|++.+|+++|++++.+||.|+|
T Consensus 621 ~~~~~d~v~l~~~d~~~~l~~~~e~~~~~~~~~f~lkL~d~~~~~~~iP~~e~~~~i~m~s~~f~~~~~~l~~~sd~v~i 700 (798)
T 3k4x_A 621 CGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINI 700 (798)
T ss_dssp HSCSSSEEEEECCSSCSEEEEEEECSSCCCEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEE
T ss_pred ccCCCCEEEEEEcCCCCeEEEEEecCCCceEEEEEEEeecCCCCCCCCCCccceEEEEEEHHHHHHHHHHHHhcCCEEEE
Confidence 99999999999998888999999999888999999999999999999999899999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
+++++.++|+++||.|++++.++++.+.++++..+.++++++++++|+++||++++|+.+++++|+|+|++++||.++|.
T Consensus 701 ~~~~~~v~~s~~gd~G~~~~~l~~~~~~~~~~~~~~i~~~e~~~~~f~l~YL~~~~Ka~~ls~~V~i~~~~~~Pl~~~y~ 780 (798)
T 3k4x_A 701 MITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 780 (798)
T ss_dssp EEETTEEEEEEECSSCEEEEEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEE
T ss_pred EEeCCEEEEEEEcccceEEEEecCCCCCCCccccEEEEcCCceEEEEEHHHHHHHhhhccCCCeEEEEeCCCccEEEEEE
Confidence 99999999999999999999998766666667777899999999999999999999999999999999999999999999
Q ss_pred eCCcEEEEEEEcccCCCCc
Q 024527 241 IAEMGYIRFYLAPKIEEDE 259 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~~~~ 259 (266)
+ ++|+++||||||+++|+
T Consensus 781 i-~~G~i~fylAPki~~~~ 798 (798)
T 3k4x_A 781 L-KSGFLQFFLAPKFNDEE 798 (798)
T ss_dssp E-TTEEEEEEECCC-----
T ss_pred E-cceEEEEEECcCCCCCC
Confidence 9 78999999999999874
No 10
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=100.00 E-value=9e-52 Score=360.25 Aligned_cols=256 Identities=91% Similarity=1.333 Sum_probs=239.3
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+++.||++++++++++++|+|+++++||+++|+|++|+|++.+.++++.|++|+|++++.+|++++.|.++||
T Consensus 21 mf~a~~~~~~~lk~ii~~~~~il~~v~~~~~~~gl~~vAtD~~rla~~~~~l~~~~f~~y~~~~~i~~~i~l~~l~kilk 100 (276)
T 2zvv_A 21 MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRNLSMGMNLGNMSKMLK 100 (276)
T ss_dssp CEEEEESCTHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHH
T ss_pred eEEEEeCChHHHHHHHHHHHHHhceEEEEEECCeEEEEEECCCCEEEEEEEEChhhCcEEEcCCCEEEEEEHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
++++++.++|.++++++++.|.+++.+.++++.|.+|++++++|+|.+|+.+|+++++|+++.|+++|+|++.+|+.|+|
T Consensus 101 ~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rLid~~~p~~~iP~~~~~~~i~~~~~~l~~av~r~~~~sd~V~i 180 (276)
T 2zvv_A 101 CAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDTVVI 180 (276)
T ss_dssp TSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCEECCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEE
T ss_pred hCCCCCeEEEEEcCCCCeEEEEEEeCCCceEEEEEEEcccCCcccCCCCCCcccEEEEEEHHHHHHHHHHHHhhCCEEEE
Confidence 99888899999987678999999998788899999999999999999998899999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.++++.+.|++.||.|++++++....+.++++..+.++++++++++|+.+||.+++|+++++++|+|+|+++.|+.|+|.
T Consensus 181 ~~~~~~l~lsa~gd~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~fn~~YL~d~lka~~ls~~V~i~l~~~~Pl~l~~~ 260 (276)
T 2zvv_A 181 SVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYK 260 (276)
T ss_dssp EEETTEEEEEEEETTEEEEEEECCCSSCCSGGGCCEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECTTSCEEEEEE
T ss_pred EEeCCEEEEEEEeeccEEEEEEccCCCCCCccccEEEecCCcEEEEEEHHHHHHHhccccCCCEEEEEEcCCceEEEEEE
Confidence 99999999999999999999996544444444445688899999999999999999999999999999999999999999
Q ss_pred eCCcEEEEEEEcccCC
Q 024527 241 IAEMGYIRFYLAPKIE 256 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~ 256 (266)
++++|+++||||||++
T Consensus 261 ~~~~g~~~y~laP~i~ 276 (276)
T 2zvv_A 261 VAEMGYIRYYLAPKIE 276 (276)
T ss_dssp ETTTEEEEEEECCBC-
T ss_pred eCCCcEEEEEEccccC
Confidence 8656899999999985
No 11
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=100.00 E-value=1.7e-49 Score=340.82 Aligned_cols=248 Identities=17% Similarity=0.320 Sum_probs=231.3
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+++.||+++++++++++++.|+++++||+++|+|++|+|++++.++++.|++|+|++++.++++++.|.++|+
T Consensus 1 mf~a~~~~~~~~k~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~kil~ 80 (248)
T 3aiz_A 1 MIKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILG 80 (248)
T ss_dssp CCEEEESCHHHHHHHHTTCTTCCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCEEEECSSCEEEEEEHHHHHHHHH
T ss_pred CeEEEecchHHHHHHHHHHHHHHheEEEEEccCcEEEEEECCCCEEEEEEEECHHhCceEEcCCCeEEEEEHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
++ +++.++|.++++++++.|.+++.++++++.|.++++|+++|+|.+|+.+|+++++|+++.|+++++|++.+++.|+|
T Consensus 81 ~~-~~~~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlidg~~p~~~iP~~~~~~~v~~~~~~l~~av~r~~~~s~~V~i 159 (248)
T 3aiz_A 81 KA-KSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKTSIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEEVEI 159 (248)
T ss_dssp TC-SSTTCEEEEEECSSEEEEEEEETTTTEEEEEEEECEEECCCCCCCCCCCCSEEEEECHHHHHHHHHHHTTSCSEEEE
T ss_pred hc-CCCEEEEEEeCCCCeEEEEEEeCCCCEEEEEEEEccccCcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcCCEEEE
Confidence 88 67789999987677999999987788999999999999999999997799999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.+++++++++++||.|++++++... ++.+.+++++++++.||.+||.+++|+++++++|+++|+++.|+.+++.
T Consensus 160 ~~~~~~l~ls~~~d~g~~~~~~~~~------~~~~~~~~ge~~~i~fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~ 233 (248)
T 3aiz_A 160 SADENTVTLSTEEAGRTYKSLLKQD------KPLKSLNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVP 233 (248)
T ss_dssp EECSSEEEEEEEETTEEEEEEEEET------BEESEEEESSCEEEEEEHHHHHHHHHHGGGCSSEEEEEETTEEEEEEEE
T ss_pred EEeCCEEEEEEEccCceEEEEEcCC------CcceEEecCCceEEEEEHHHHHHHhhhccCCCeEEEEEcCCCCEEEEEE
Confidence 9999999999999999999999531 1223466788999999999999999999989999999999899999998
Q ss_pred eCCcEEEEEEEcccC
Q 024527 241 IAEMGYIRFYLAPKI 255 (266)
Q Consensus 241 i~~~g~~~~~iaPr~ 255 (266)
++++|++.||||||+
T Consensus 234 ~~~~~~~~y~i~P~i 248 (248)
T 3aiz_A 234 TDSGGQLIFWIAPRL 248 (248)
T ss_dssp CTTSCEEEEEECCCC
T ss_pred eCCCcEEEEEECCcC
Confidence 866689999999996
No 12
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=100.00 E-value=6.8e-48 Score=330.99 Aligned_cols=248 Identities=23% Similarity=0.437 Sum_probs=222.6
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|++.+++.|++++++++++++++.|+++++||+++|+|++|+|++++.++++.|++|+|++++.++++++.|.|+|+
T Consensus 2 ~f~a~~~~~~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~~~~~~~l~~l~kil~ 81 (249)
T 1iz5_A 2 PFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILK 81 (249)
T ss_dssp CEEEEEECHHHHHHHHHHHTSSCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHT
T ss_pred cEEEEeCchHHHHHHHHHHHHHhcEEEEEEeCCeEEEEEECCCcEEEEEEEECHHhCcEEEcCCCeEEEEEHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVI 160 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i 160 (266)
++++++.++|.+++++ ++.|.+++.. ++.|.++++|+++|+|.+|+.+|+++++|+++.|+++++|++.+++.|+|
T Consensus 82 ~~~~~~~v~i~~~~~~-~l~f~~~~~~---~~~~~~rlidg~~p~~~iP~~~~~~~v~i~~~~l~~a~~r~~~ls~~V~l 157 (249)
T 1iz5_A 82 RGKAKDTLILKKGEEN-FLEITIQGTA---TRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAASLVSDSIKF 157 (249)
T ss_dssp TCCTTCEEEEEECSSS-EEEEEEESSS---EEEEEEECBCCCC-----CCCCCCEEEEEEHHHHHHHHHHHTTTCSEEEE
T ss_pred hCCCCCEEEEEECCCC-eEEEEEecCC---EEEEEEEcccCCccCCCCCCCcceEEEEEEHHHHHHHHHHHHhcCCEEEE
Confidence 9887889999997766 8999998742 56999999999999999997799999999999999999999999999999
Q ss_pred EEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEE
Q 024527 161 SVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYK 240 (266)
Q Consensus 161 ~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~ 240 (266)
.+++++++++++||.|++++++... .+..+.++++++++++||.+||.+++|+++++++|.++|+++.|+.+++.
T Consensus 158 ~~~~~~l~ls~~~d~g~~~~~l~~~-----~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~ 232 (249)
T 1iz5_A 158 IARENEFIMKAEGETQEVEIKLTLE-----DEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYY 232 (249)
T ss_dssp EEETTEEEEEEECSSCEEEEEEETT-----TTSSSEEEESSCEEEEEEHHHHHHHHTTSCTTCEEEEEECTTCCEEEEEE
T ss_pred EEECCEEEEEEEecCceEEEEEccC-----CCccEEEEcCCceEEEEeHHHHHHHhhhccCCCeEEEEEcCCCCEEEEEE
Confidence 9999999999999999999999531 12334577789999999999999999999999999999999899999998
Q ss_pred eCCcEEEEEEEcccCCC
Q 024527 241 IAEMGYIRFYLAPKIEE 257 (266)
Q Consensus 241 i~~~g~~~~~iaPr~~~ 257 (266)
++++|++.||||||+++
T Consensus 233 ~~~~~~~~y~i~P~~~~ 249 (249)
T 1iz5_A 233 IRDEGRLTFLLAPRVEE 249 (249)
T ss_dssp ETTTEEEEEEECCC---
T ss_pred eCCCcEEEEEEccccCC
Confidence 86568999999999973
No 13
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=100.00 E-value=8.1e-49 Score=339.20 Aligned_cols=241 Identities=13% Similarity=0.250 Sum_probs=220.9
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCc-EEEEEEhhhHHHHh
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRN-ISMGMNLNNVSKML 79 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~-~~~gi~l~~L~~il 79 (266)
||+|++.+++.|+++++++ .++++++|+++++||+++|+| +|++++.+.|++++|++|+|+++ ..||||++.|.+||
T Consensus 4 ~f~a~~~~a~~l~~il~ai-~l~~ea~~~~s~~Gi~l~a~D-s~v~~v~l~l~~~~F~~Y~~~~~~~~~gi~l~~l~k~L 81 (263)
T 3a1j_C 4 SLVASLDNVRNLSTILKAI-HFREHATCFATKNGIKVTVEN-AKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCL 81 (263)
T ss_dssp SEEEEESCTHHHHHHHHTT-CSSSEEEEEEETTEEEEEEEE-TTTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHhhe-ecCcEEEEEEcCCeEEEEEEe-CCEEEEEEEECHHHCceEEEcCCCcEEEEEhHHHHHHH
Confidence 8999999999999999999 999999999999999999999 99999999999999999999988 99999999999999
Q ss_pred cccCCC----c--eEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeE-----EEEEehHHHHHHH
Q 024527 80 KCAGND----D--IITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHA-----IVRMPSAEFARIC 148 (266)
Q Consensus 80 k~~~~~----d--~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~-----~i~~~s~~~~~~i 148 (266)
++++++ | .++|.+.++++++.+.+++ .|+++.|.+++++++.+ |+.+|++ ++.|+|+.|+++|
T Consensus 82 ~~~~~~~~~~d~~~l~i~~~~~~~~l~l~~e~--~~~~~~~~l~~~~~~~~----~d~~f~~~~~~~~v~m~s~~l~~~~ 155 (263)
T 3a1j_C 82 SIFGSSPMPGTLTALRMCYQGYGYPLMLFLEE--GGVVTVCKINTQEPEET----LDFDFCSTNVINKIILQSEGLREAF 155 (263)
T ss_dssp TTTCSCCCTTCCCEEEEEECSTTCCEEEEEEE--TTEEEEEEECCBCCCCC----CCCCCCTTTEEEEEEEEGGGGHHHH
T ss_pred HHhcCCcCCCCceEEEEEECCCCCcEEEEEEe--CCeEEEEEEEEEcCCcc----cCcccCcccceEEEEEehHHHHHHH
Confidence 999987 7 4666688878899999986 47889999999999873 5556666 9999999999999
Q ss_pred HHhhccCCEEEEEEeCC--eEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEE
Q 024527 149 KDLASIGDTVVISVTKE--GVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVT 226 (266)
Q Consensus 149 ~~~~~~~d~v~i~~~~~--~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~ 226 (266)
++++.+||.|+|.++++ .+.|+++||.|++++.++.. .+..+.++++++++.+|+++||+.++|+++++++|+
T Consensus 156 ~dl~~~~d~v~i~~~~~~p~~~~~~~Gd~g~~~i~~~~~-----~~~~~~~~~~~~~~~~y~l~yL~~~~ka~~~s~~v~ 230 (263)
T 3a1j_C 156 SELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKD-----SDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVS 230 (263)
T ss_dssp HTSCTTSSEEEEEECSSSSSEEEEEEETTEEEEEEECTT-----CSSEEEEEECSCEEEEEEHHHHTTHHHHHHHCSEEE
T ss_pred HHHhccCCeEEEEEEcCCCEEEEEEEcCCccEEEEEcCC-----CCeEEEEEeCChhhcEEeHHHHHHHHhhhhhcCEEE
Confidence 99999999999999988 99999999999999999531 122335888999999999999999999999999999
Q ss_pred EEecCCCcEEEEEEeCC-cEE---EEEEEccc
Q 024527 227 ISLSSELPVVVEYKIAE-MGY---IRFYLAPK 254 (266)
Q Consensus 227 l~~~~~~Pl~l~~~i~~-~g~---~~~~iaPr 254 (266)
|++++++||+++|.+++ +|+ ++||||||
T Consensus 231 i~~~~~~pL~l~~~i~~~~g~~~~v~f~laP~ 262 (263)
T 3a1j_C 231 IRTDNRGFLSLQYMIRNEDGQICFVEYYCCPD 262 (263)
T ss_dssp EEEETTCCEEEEEEEECTTSCEEEEEEEECCC
T ss_pred EEECCCeeEEEEEEEecCCCCEEEEEEEEEEC
Confidence 99999999999999976 677 99999998
No 14
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=100.00 E-value=9.2e-47 Score=323.02 Aligned_cols=244 Identities=18% Similarity=0.383 Sum_probs=224.8
Q ss_pred eeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcc
Q 024527 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKC 81 (266)
Q Consensus 2 f~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~ 81 (266)
|+|++.+++.|++++++++++++++.|+++++||+++|+|++|+|++++.++++.|++|+|++++.+|+++..|.|+|++
T Consensus 1 ~~a~~~~a~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~kiL~~ 80 (244)
T 2ijx_A 1 MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKV 80 (244)
T ss_dssp CEEEESCHHHHHHHHHHHHHHCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSSCEEEEEEHHHHHHHHTT
T ss_pred CEEEECchHHHHHHHHHHHHHhceEEEEEecCeEEEEEECCCcEEEEEEEECHHhCceEEcCCCEEEEEEHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999998899999999889999999999999999
Q ss_pred cCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEEE
Q 024527 82 AGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVIS 161 (266)
Q Consensus 82 ~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i~ 161 (266)
+++++.++|.++++++++.|.+++ +++.|.++++|+++|+|.+|+.+|+++++|+++.|+++++|++.+++.|+|.
T Consensus 81 ~~~~~~v~i~~~~~~~~l~~~~~~----~~~~~~~rlidg~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~~~~s~~V~l~ 156 (244)
T 2ijx_A 81 AKRKEAIEIASESPDSVIINIIGS----TNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVE 156 (244)
T ss_dssp CCSSCEEEEEEEETTEEEEEEESS----SEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTTTCSEEEEE
T ss_pred CCCCCEEEEEecCCCCEEEEEECC----EEEEEEEECCccCcccCCCCCCcccEEEEEEHHHHHHHHHHHHhcCCEEEEE
Confidence 887889999998777799999843 4679999999999999999977999999999999999999999999999999
Q ss_pred EeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEEe
Q 024527 162 VTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI 241 (266)
Q Consensus 162 ~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i 241 (266)
+++++++++++||.|+ ++++.. ..+..+.++++++++++||.+||.+++|+++++++|+++|+++.|+.+++.+
T Consensus 157 ~~~~~l~ls~~~d~g~-~~~l~~-----~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~ 230 (244)
T 2ijx_A 157 GHEDRILIKAEGESEV-EVEFSK-----DTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNM 230 (244)
T ss_dssp EETTEEEEEETTCTTS-EEEEET-----TTTCEEEEEESSCEEEEEEHHHHHHTGGGGGGCSEEEEEEETTEEEEEEEEC
T ss_pred EECCEEEEEEEecCce-EEEEeC-----CCCccEEEEcCCceEEEEEHHHHHHHhhhccCCCEEEEEEcCCCCEEEEEEe
Confidence 9999999999999999 999852 1122345777889999999999999999999899999999998999999988
Q ss_pred CCcEEEEEEEcccC
Q 024527 242 AEMGYIRFYLAPKI 255 (266)
Q Consensus 242 ~~~g~~~~~iaPr~ 255 (266)
+++|++.||||||+
T Consensus 231 ~~~~~~~y~i~P~~ 244 (244)
T 2ijx_A 231 EGGGKVTYLLAPKV 244 (244)
T ss_dssp GGGCEEEEEECCCC
T ss_pred CCCcEEEEEECccC
Confidence 65589999999996
No 15
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=100.00 E-value=5.8e-47 Score=324.47 Aligned_cols=245 Identities=22% Similarity=0.374 Sum_probs=222.3
Q ss_pred eeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcc
Q 024527 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKC 81 (266)
Q Consensus 2 f~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~ 81 (266)
|+|++.+++.||+++++++++++++.|+++++||+++|+|++|+|++++.++++.|++|+|++++.+|++++.|.|+|++
T Consensus 1 f~a~~~~~~~~k~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~kiL~~ 80 (245)
T 1ud9_A 1 AHIVYDDVRDLKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKA 80 (245)
T ss_dssp CEEEESCHHHHHHHHHHHHHHCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHTT
T ss_pred CEEEeCchHHHHHHHHHHHHHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCeEEEcCCCeEEEEEHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999999999998899999999889999999999999999
Q ss_pred cCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEEE
Q 024527 82 AGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVIS 161 (266)
Q Consensus 82 ~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i~ 161 (266)
+++++.++|.++++++++.|.+++ +++.|.++++|+++|+|.+|+.+|+++++|+++.|+++++|++.+++.|+|.
T Consensus 81 ~~~~~~v~i~~~~~~~~l~~~~~~----~~~~~~~rlidg~~p~~~ip~~~~~~~i~i~~~~l~~a~~r~~~~s~~V~l~ 156 (245)
T 1ud9_A 81 AKRKEEIIIDADSPEVVKLTLSGA----LNRVFNVNNIEVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEVADTLLIS 156 (245)
T ss_dssp CCSCCCEEEEEEETTEEEEEECSS----SCEEEEEECCCCCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEECC----EEEEEEEECcccCcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcCCEEEEE
Confidence 877788999998777789998843 3569999999999999999977999999999999999999999999999999
Q ss_pred EeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEEe
Q 024527 162 VTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKI 241 (266)
Q Consensus 162 ~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i 241 (266)
+++++++++++||.|+ ++++... .+..+.++++++++++||.+||.+++|+++++++|.++|+++.|+.+++.+
T Consensus 157 ~~~~~l~ls~~~d~g~-~~~l~~~-----~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~ 230 (245)
T 1ud9_A 157 GNEEKVVVKGEGENKV-EVEFSKD-----TGSLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNM 230 (245)
T ss_dssp ECSSEEEEEESSSSCC-CEEEEGG-----GTCEEEEEESSCEEEEEEHHHHHHTGGGGGGCSEEEEEECTTSCEEEEEEC
T ss_pred EECCEEEEEEEccCce-EEEEecC-----CCccEEEEeCCceeEEEEHHHHHHHhhhcccCCEEEEEEcCCCCEEEEEEe
Confidence 9999999999999999 9998531 122334677889999999999999999999899999999998999999987
Q ss_pred CCcEEEEEEEcccCC
Q 024527 242 AEMGYIRFYLAPKIE 256 (266)
Q Consensus 242 ~~~g~~~~~iaPr~~ 256 (266)
+++|++.||||||++
T Consensus 231 ~~~~~~~y~i~P~~~ 245 (245)
T 1ud9_A 231 EGGGKVTYLLAPKLS 245 (245)
T ss_dssp GGGCEEEEEECCBCC
T ss_pred CCCcEEEEEEcccCC
Confidence 555899999999985
No 16
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=100.00 E-value=1e-45 Score=316.77 Aligned_cols=243 Identities=24% Similarity=0.408 Sum_probs=219.7
Q ss_pred eEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhccc
Q 024527 3 ELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCA 82 (266)
Q Consensus 3 ~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~ 82 (266)
+|++.+++.|+++++++++++++++|+++++||+++|+|++|+|++++.++++.|++|+|++++.+|+++..|.|+|+++
T Consensus 2 ~~~~~~~~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~el~kiL~~~ 81 (245)
T 1rwz_A 2 IDVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSI 81 (245)
T ss_dssp EEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHTTS
T ss_pred eEEecchHHHHHHHHHHHHHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCceEEcCCCeEEEEEHHHHHHHHhhC
Confidence 78999999999999999999999999999999999999999999999999988999999999999999999999999998
Q ss_pred CCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhccCCEEEEEE
Q 024527 83 GNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVISV 162 (266)
Q Consensus 83 ~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~d~v~i~~ 162 (266)
++++.++|.+++++ ++.|.+++ .++.|.++++|+++|+|.+|+.+|+++++|+++.|+++++|++.+++.|+|.+
T Consensus 82 ~~~~~v~i~~~~~~-~l~~~~~~----~~~~~~~rlidg~~p~~~iP~~~~~~~v~~~~~~l~~av~r~~~ls~~V~l~~ 156 (245)
T 1rwz_A 82 STKDLVELIVEDES-TLKVKFGS----VEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRS 156 (245)
T ss_dssp CTTSEEEEEESSSS-EEEEEETT----EEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCCEEEEEECCCC-eEEEEEee----eEEEEEEEccccCccCCCCCCCcccEEEEEEHHHHHHHHHHHHhcCCEEEEEE
Confidence 87889999997766 89998875 25699999999999999999779999999999999999999999999999999
Q ss_pred eCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEEeC
Q 024527 163 TKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIA 242 (266)
Q Consensus 163 ~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i~ 242 (266)
++++++++++||.|++...... +..+.++ +++++++||.+||.+++|+++++++|+++|+++.|+.+++.++
T Consensus 157 ~~~~l~ls~~~d~g~~~~~~~~-------e~~~~~~-g~~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~ 228 (245)
T 1rwz_A 157 DKEGFRIEAKGDVDSIVFHMTE-------TELIEFN-GGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELV 228 (245)
T ss_dssp ETTEEEEEEECSSCEEEEEECG-------GGSSEEC-CCCEEEEEEHHHHHHHGGGCCTTCEEEEEECSSSCEEEEEEET
T ss_pred ECCEEEEEEEccCcEEEEecCC-------CccEEEE-EeeEEEEEeHHHHHHHhhhccCCCeEEEEECCCCCEEEEEEEC
Confidence 9999999999999997665421 1122333 3459999999999999999999999999999989999999886
Q ss_pred Cc-EEEEEEEcccCCCC
Q 024527 243 EM-GYIRFYLAPKIEED 258 (266)
Q Consensus 243 ~~-g~~~~~iaPr~~~~ 258 (266)
++ |++.||||||+++|
T Consensus 229 ~~~~~~~y~i~P~~~~~ 245 (245)
T 1rwz_A 229 GGRAKVEYILAPRIESE 245 (245)
T ss_dssp TTTEEEEEEECCBCCC-
T ss_pred CCcEEEEEEEccccCCC
Confidence 65 89999999999854
No 17
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=100.00 E-value=1.5e-45 Score=315.80 Aligned_cols=244 Identities=19% Similarity=0.408 Sum_probs=222.3
Q ss_pred CeeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 1 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
||+|+ +++.||+++++++++++++.|+++++||+++|+|++|+|++++.++++.|++|+|++++.+|+++..|.|+|+
T Consensus 2 ~fr~~--~~~~lk~~i~~~~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~~i~~~~~l~~l~kiL~ 79 (246)
T 3aiz_C 2 RVKVI--DADAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEKEEKVGVKLEDFTDVLK 79 (246)
T ss_dssp EEEES--CHHHHHHHHHHHTTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHT
T ss_pred ceEEe--cHHHHHHHHHHHHHHhcEEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCcEEEcCCCeEEEEEHHHHHHHHh
Confidence 38887 8999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-CCEEE
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-GDTVV 159 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~d~v~ 159 (266)
++++++.++|.++ +++++.|.+++.. ++.|.++++|+++|+|.+|+.+|+++++|+++.|+++++|++.+ ++.|+
T Consensus 80 ~~~~~~~v~i~~~-~~~~l~~~~~~~~---~~~~~~rlidg~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~~~l~s~~V~ 155 (246)
T 3aiz_C 80 TVTKNDSLYLETD-ENQNIKVTLDGVY---ERTFTFPSIVASEIETPNLNLEFPFKAKALTVTFTDIIDEIEDIGGDSIT 155 (246)
T ss_dssp TCCTTCEEEEEEC-SSSCEEEEEESSS---EEEEEECCCCCCCCCCSCSCCCCSEEEEEEHHHHHHHHHHHHHHCCSEEE
T ss_pred hCCCCCEEEEEEC-CCCeEEEEEecCc---EEEEEEEcccCCcccCCCCCCcccEEEEEEHHHHHHHHHHHhhCCCCEEE
Confidence 9887888999993 4358999998742 56999999999999999997799999999999999999999999 99999
Q ss_pred EEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEE
Q 024527 160 ISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEY 239 (266)
Q Consensus 160 i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~ 239 (266)
|.++++.++++++||.|++++++... ++..+.++. ++++++||.+||.+++|+++++++|+++|+++.|+.+++
T Consensus 156 l~~~~~~l~ls~~~d~g~~~~~l~~~-----~~~~~~~~g-e~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~ 229 (246)
T 3aiz_C 156 FKAEGGKLYLSANSDMGSSTIELSTE-----NGGLLESEG-GDAESVYGLEYVVNTSKMRKPSDTVEIAFGSQIPLKLRY 229 (246)
T ss_dssp EEEETTEEEEEEECSSCEEEEEECTT-----TTSCSEEEE-CCEEEEEEHHHHHTTGGGTTTCSEEEEEEETTEEEEEEE
T ss_pred EEEECCEEEEEEEcCCceEEEEEecC-----CCccEEEEE-eeEEEEEEHHHHHHHhhhccCCCeEEEEecCCCcEEEEE
Confidence 99999999999999999999999421 122234554 889999999999999999999999999999989999999
Q ss_pred EeCCcEEEEEEEcccCC
Q 024527 240 KIAEMGYIRFYLAPKIE 256 (266)
Q Consensus 240 ~i~~~g~~~~~iaPr~~ 256 (266)
.++++|++.||||||++
T Consensus 230 ~~~~~~~~~y~i~P~~~ 246 (246)
T 3aiz_C 230 NLPQGGYADFYIAPRAE 246 (246)
T ss_dssp EETTTEEEEEEECBCCC
T ss_pred EeCCCCEEEEEEcccCC
Confidence 88666899999999985
No 18
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=100.00 E-value=1.1e-38 Score=277.76 Aligned_cols=250 Identities=13% Similarity=0.211 Sum_probs=213.6
Q ss_pred eeEEEcChh---hHHHHHHHHHhhhceeeEEEeCCceEEEEECC---CCeEEEEEEecCCCcceeeeC------CcEEEE
Q 024527 2 LELRLVQGS---LLKKVLEAIKELVNDANFDCSATGFSLQAMDS---SHVALVALLLRSEGFEHYRCD------RNISMG 69 (266)
Q Consensus 2 f~a~~~~~~---~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~---~r~a~v~~~l~~~~F~~y~~~------~~~~~g 69 (266)
|+|++.++. .||+++++++++.++|+|+++++||+++++|. ++++++...+..++|++|+|+ +++.+|
T Consensus 4 F~a~l~~~~~~~~lkki~~ai~~L~k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I~l~ 83 (281)
T 3a1j_B 4 FRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIYLE 83 (281)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHCSEEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEEEE
T ss_pred EEEEecCcchHHHHHHHHHHHHHHhCEEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEEEEE
Confidence 999999987 99999999999999999999999999999998 888887777778999999999 479999
Q ss_pred EEhhhHHHHhcccCCCceEEEEEc-CCCCeEEEEEeCC-----CCCeEEEEEEeeeec-CCCCCCCCcc-eeeEEEEEeh
Q 024527 70 MNLNNVSKMLKCAGNDDIITLKAD-DGSDTVTFMFESP-----TQDKIADFEMKLMDI-DSEHLGIPEA-EYHAIVRMPS 141 (266)
Q Consensus 70 i~l~~L~~ilk~~~~~d~l~l~~~-~~~~~l~i~~~~~-----~~~~~~~~~l~li~~-~~~~~~ip~~-~~~~~i~~~s 141 (266)
++++.|.|+||++++++.++|++. ++...|.|.+... ....+..+.+++++. +.+++.+|+. +|++.+.||+
T Consensus 84 v~~~~L~k~Lk~a~n~~~~~ikL~k~~~p~L~fe~~~~~~~~~~~~v~~dipvkll~~~~~e~l~~P~~~~~dv~i~lPs 163 (281)
T 3a1j_B 84 LTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPV 163 (281)
T ss_dssp EEHHHHHHHGGGGGGEEEEEEEEECSSSCEEEEEEEECCSSSCCCEEEEEEECEECCGGGGGGGSCCCCCCCSEEEECCC
T ss_pred EeHHHHHHHHHhcCCCCeEEEEeccCCCCEEEEEEEcccCCCCceEEEEEeeeEEcCHHHHhhcCCCCCCCCCeEEECCC
Confidence 999999999999998899999974 3346788877732 222334688899997 5578999998 8999999999
Q ss_pred -HHHHHHHHHhhccCCEEEEEEeCC-eEEEEEEecceeEEEEEeecccCCC--CCCceEEEecCcEEEEEehHHHHhccc
Q 024527 142 -AEFARICKDLASIGDTVVISVTKE-GVKFSTRGDIGTANIVLRQNTTVDK--PEEATIIEMHEPVSLTFALRYMNSFTR 217 (266)
Q Consensus 142 -~~~~~~i~~~~~~~d~v~i~~~~~-~l~~s~~gd~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~yL~~~~k 217 (266)
.+|+++|+|++.+|+.|+|+++.+ .+.|+++||.|++.+.|++..+... +++....+.+++++.+|++|||..|+|
T Consensus 164 l~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~sv~~~~k~l~~f~k 243 (281)
T 3a1j_B 164 LKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIRKLLQFLA 243 (281)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECSSEEEEEEECCCCCCCC----------CCCCEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEeeeEEEEEEEcCCCCCCCCccccccccCCCccEEEEEEHHHHHHhhC
Confidence 899999999999999999999855 5999999999999999987544321 222333556788999999999999999
Q ss_pred cCCCCceEEEE-ecCCCcEEEEEEeCCcEEEEEEEc
Q 024527 218 ATPLSNTVTIS-LSSELPVVVEYKIAEMGYIRFYLA 252 (266)
Q Consensus 218 ~~~ls~~v~l~-~~~~~Pl~l~~~i~~~g~~~~~ia 252 (266)
+.++++.+.+. ++++.||.+ |.++++|+++|||+
T Consensus 244 ~~~ls~~v~~~~i~~~~~l~~-y~~~~~g~l~yylp 278 (281)
T 3a1j_B 244 GQQVNPTKALCNIVNNKMVHF-DLLHEDVSLQYFIP 278 (281)
T ss_dssp HCCSCCSEEEEEEETTTEEEE-EEESSSCEEEEEEE
T ss_pred cccCCCcEEEEEEeCCceEEE-EEeCCcEEEEEEee
Confidence 99999888888 999999999 77988999999996
No 19
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=100.00 E-value=3e-39 Score=279.65 Aligned_cols=243 Identities=13% Similarity=0.184 Sum_probs=211.1
Q ss_pred eeEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCC----cEEEEEEhhhHHH
Q 024527 2 LELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDR----NISMGMNLNNVSK 77 (266)
Q Consensus 2 f~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~----~~~~gi~l~~L~~ 77 (266)
|.+...+++.|+++++++++++++++|+++++||+++|||++|+|++.+.+++++|++|+|+. +..+||+++.|.+
T Consensus 3 ~~i~~~~~~~~~k~i~als~l~~e~~~~~~~~gl~l~a~d~S~va~v~l~~~~~fF~~Y~~~~~~~~~~~~gv~~k~l~k 82 (266)
T 3a1j_A 3 CLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLS 82 (266)
T ss_dssp EEEETHHHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHHHH
T ss_pred eEEcchhHHHHHHHHHHHHhhCCcEEEEEccCcEEEEEEcCcccEEEEEEEchHhhhheecCCCCCCcEEEEEEhhHHHH
Confidence 445555899999999999999999999999999999999999999999999999999999984 5889999999999
Q ss_pred HhcccCCC----ceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhc
Q 024527 78 MLKCAGND----DIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLAS 153 (266)
Q Consensus 78 ilk~~~~~----d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~ 153 (266)
+||+++++ |.+.|+++++.+.+.|++++.+ |++++|.+++++.+.++..+|+.+|+++++|+++.|+++|+++..
T Consensus 83 ilk~~~~~d~~vd~~~i~~~~~~~~l~~~~~~~~-~~~k~~~l~l~d~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~ 161 (266)
T 3a1j_A 83 VFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKF-GVRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSP 161 (266)
T ss_dssp HHCCHHHHHHHEEEEEEECCTTCSEEEEEEEEGG-GCEEEEEEECEECCCCCCCCCGGGCSEEEEEEHHHHHHHHTTSCT
T ss_pred HhCCcccccccceEEEEEEcCCCceEEEEEEccC-CceEEEEEEEEccccccceechhhCCceEEEChHHHHHHHHhCCC
Confidence 99999865 6899999888889999999875 889999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEe-CCeEEEEEEecce------eEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHh---ccccCCCCc
Q 024527 154 IGDTVVISVT-KEGVKFSTRGDIG------TANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNS---FTRATPLSN 223 (266)
Q Consensus 154 ~~d~v~i~~~-~~~l~~s~~gd~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~---~~k~~~ls~ 223 (266)
++|.|+|.++ ++++.|++.||.| ..+.++.. .+++.+.++++++++++|+++||+. +.++.+ .
T Consensus 162 ~~d~v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~-----~~~e~~~~~~~~~~~~tFslkyl~~~l~f~~~~~--~ 234 (266)
T 3a1j_A 162 ALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCL-----GEEDFQQLQAQEGVAITFCLKEFRGLLSFAESAN--L 234 (266)
T ss_dssp TCCEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEE-----CGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHTT--C
T ss_pred ChhhEEEEeCCCCEEEEEEcccCccccccccceEEEEE-----CHHHhhheecCCCCEEEEEHHHHHHHHHHHHhcC--C
Confidence 9999999999 9999999976542 22344421 2345556888899999999999999 555554 4
Q ss_pred eEEEEecC-CCcEEEEEEeCCcEEEEEEEcc
Q 024527 224 TVTISLSS-ELPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 224 ~v~l~~~~-~~Pl~l~~~i~~~g~~~~~iaP 253 (266)
.|+++|+. +.|+.++|. +++++++||||-
T Consensus 235 ~v~i~~~~~g~Pl~~~~~-~~~~~~~f~LAT 264 (266)
T 3a1j_A 235 NLSIHFDAPGRPAIFTIK-DSLLDGHFVLAT 264 (266)
T ss_dssp EEEEEECSTTSCEEEEEE-CSSEEEEEEECC
T ss_pred cEEEEECCCCccEEEEEe-CCcEEEEEEEee
Confidence 59999964 679999993 333599999984
No 20
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=99.97 E-value=8e-30 Score=222.80 Aligned_cols=256 Identities=13% Similarity=0.173 Sum_probs=214.6
Q ss_pred eEEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCC----cEEEEEEhhhHHHH
Q 024527 3 ELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDR----NISMGMNLNNVSKM 78 (266)
Q Consensus 3 ~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~----~~~~gi~l~~L~~i 78 (266)
.+...+++.|.+++.+++++.+++.|+++++||+++|+|++|+|++.+.+++.+|++|+++. .+.++|+++.|.++
T Consensus 4 ~i~g~~~K~f~kai~~LskigdEl~~e~~~dgL~LravNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~~c~i~~K~ll~v 83 (296)
T 3g65_A 4 LVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSV 83 (296)
T ss_dssp EEETHHHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC-------CCEEEEHHHHHTT
T ss_pred EEecccHHHHHHHHHHHHhhCceEEEEEcCCeEEEEEECCcceEEEEEEeChHHhhheecCCCCCccEEEEEEhHHHHHH
Confidence 45556788999999999999999999999999999999999999999999999999999874 47789999999999
Q ss_pred hcccCC----CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc
Q 024527 79 LKCAGN----DDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASI 154 (266)
Q Consensus 79 lk~~~~----~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~ 154 (266)
+|+... -+.+.|+++.+.++|.|++.+. .|.+++|.++.++.+..+...|+..+++.+.++++.|+++++.+...
T Consensus 84 fr~~~~~d~~ve~c~i~l~~~~~rl~i~l~ck-~gi~Kt~~l~~~~~~~l~a~~~~~~~~n~~~i~~~~l~e~l~~f~~~ 162 (296)
T 3g65_A 84 FRSLAMLEKTVEKCCISLNGRSSRLVVQLHCK-FGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPA 162 (296)
T ss_dssp TSSTTC----CCEEEEEECCC---EEEEEECG-GGCEEEEEECCCCCCCCCCCCCGGGCSCEEEEEHHHHHHHSTTSCTT
T ss_pred hccccccccceeEEEEEEeCCCCEEEEEEEeC-CCeEEEEEEEeEeccccccccCchhCcEEEEEchHHHHHHHHhCcCC
Confidence 999853 4679999988788999999765 48899999999999888777887789999999999999999999999
Q ss_pred CCEEEEEEe-CCeEEEEEEecc------eeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccC-CCCceEE
Q 024527 155 GDTVVISVT-KEGVKFSTRGDI------GTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRAT-PLSNTVT 226 (266)
Q Consensus 155 ~d~v~i~~~-~~~l~~s~~gd~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~-~ls~~v~ 226 (266)
.+.|+|.++ ++++.|++.+|. +..++++.. ++++...++++++++++|++|||+.++..+ .++..|.
T Consensus 163 ~eevtl~~~~~~~v~~~s~~e~~~d~~~~~~~Tel~i-----~~~ef~~~~v~~~~~itf~lKefrail~~ae~~~~~i~ 237 (296)
T 3g65_A 163 LAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCL-----GEEDFQQLQAQEGVAITFCLKEFRGLLSFAESANLNLS 237 (296)
T ss_dssp CCEEEEEEETTTEEEEEECCC-----CCCCCEEEEEE-----CGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHTTCEEE
T ss_pred cceEEEEECCCCeEEEEEeccccccccCceEEEEEEE-----ChhHheeEecCCCcEEEEEHHHHHHHHHHHHhcCCeEE
Confidence 999999999 799999998652 345555532 223444577889999999999999999866 4467999
Q ss_pred EEecC-CCcEEEEEEeCCcEEEEEEEcccCCCCcccCCCC
Q 024527 227 ISLSS-ELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKPQ 265 (266)
Q Consensus 227 l~~~~-~~Pl~l~~~i~~~g~~~~~iaPr~~~~~~~~~~~ 265 (266)
++|+. +.|+.++|. .++..++|++|++.+.|...+-|+
T Consensus 238 i~f~~pG~Pl~~~~~-~~~~~~~fvLaT~~~~~~~~~~~~ 276 (296)
T 3g65_A 238 IHFDAPGRPAIFTIK-DSLLDGHFVLATLSDTDSGTTSTS 276 (296)
T ss_dssp EECCSTTSCEEEEEE-CSSCEEEEEECCCCSSSCSCC---
T ss_pred EEECCCCCcEEEEEe-CCcEEEEEEEEECCCCCCcccCCc
Confidence 99997 469999997 456899999999999887776654
No 21
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=99.95 E-value=5.8e-26 Score=204.62 Aligned_cols=214 Identities=14% Similarity=0.206 Sum_probs=186.8
Q ss_pred ChhhHHHHHHHHH---------hhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEAIK---------ELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~l~---------~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++.+. ++++|+.|++.+++++++|+|+||+|+..+.++.+. . +..+.|+.+.|.++
T Consensus 131 ~~~~l~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~-~------~~~~iiP~k~l~el 203 (366)
T 3d1g_A 131 PQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSL-P------SHSVIVPRKGVIEL 203 (366)
T ss_dssp CHHHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEE-E------EEEEEEEHHHHHHH
T ss_pred CHHHHHHHHhheeEEeccCCCccceEEEEEEEeCCEEEEEEeCCccEEEEEeccCCCC-c------ccEEEEEHHHHHHH
Confidence 4789999999865 899999999999999999999999999999887532 1 14578999999998
Q ss_pred hcccCC-CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccC
Q 024527 79 LKCAGN-DDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIG 155 (266)
Q Consensus 79 lk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~ 155 (266)
.|.+.. ++.+.|.++++ ++.|.+++. .|.++++|+.+|+| .+|+ +++.+++++++.|.++++|++.++
T Consensus 204 ~kll~~~~~~v~i~~~~~--~i~f~~~~~------~~~srLidg~fPdy~~viP~-~~~~~~~v~~~~l~~al~Rvsils 274 (366)
T 3d1g_A 204 MRMLDGGDNPLRVQIGSN--NIRAHVGDF------IFTSKLVDGRFPDYRRVLPK-NPDKHLEAGCDLLKQAFARAAILS 274 (366)
T ss_dssp HHTCCSSSCCEEEEECSS--EEEEEETTE------EEEEECCSSCCCCHHHHSCS-CCCEEEEEEHHHHHHHHHHHHHTS
T ss_pred HHhcccCCccEEEEEcCC--EEEEEECCE------EEEEEEecccCCChhhcCCC-CCCeEEEEEHHHHHHHHHHHHHHh
Confidence 888865 56799999754 899988765 89999999999988 6786 999999999999999999999998
Q ss_pred C----EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEe
Q 024527 156 D----TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISL 229 (266)
Q Consensus 156 d----~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~ 229 (266)
+ .|++.++++.+.+++.+ |.|++++++. ++. ++++++.||.+||.+++++++ +++|.++|
T Consensus 275 ~~~~~~v~l~~~~~~l~i~a~~~e~g~a~e~l~-------------~~~~Ge~~~I~fN~~YL~d~L~~~~-~~~v~l~~ 340 (366)
T 3d1g_A 275 NEKFRGVRLYVSENQLKITANNPEQEEAEEILD-------------VTYSGAEMEIGFNVSYVLDVLNALK-CENVRMML 340 (366)
T ss_dssp CTTTCEEEEEEETTEEEEEEECTTCCEEEEEEE-------------CBCCSCCEEEEEEHHHHHHHHHHCC-SSEEEEEE
T ss_pred cCCCceEEEEEeCCEEEEEEcCCCCceEEEEEE-------------EEecCCcEEEEEcHHHHHHHHhcCC-CCEEEEEE
Confidence 5 59999999999999987 8999888872 334 678999999999999999998 99999999
Q ss_pred cCC-CcEEEEEEeCCcEEEEEEEcc
Q 024527 230 SSE-LPVVVEYKIAEMGYIRFYLAP 253 (266)
Q Consensus 230 ~~~-~Pl~l~~~i~~~g~~~~~iaP 253 (266)
+++ .|+.+++. +++.+.|+|+|
T Consensus 341 ~~~~~p~~i~~~--~~~~~~ylvmP 363 (366)
T 3d1g_A 341 TDSVSSVQIEDA--ASQSAAYVVMP 363 (366)
T ss_dssp CCTTSCEEEEET--TEEEEEEEECC
T ss_pred CCCCCCEEEEcC--CCCceEEEEEE
Confidence 998 69999874 45789999999
No 22
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=99.94 E-value=2.5e-25 Score=201.31 Aligned_cols=216 Identities=15% Similarity=0.215 Sum_probs=184.6
Q ss_pred hhhHHHHHHHH---------HhhhceeeEEEeCC-ceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 9 GSLLKKVLEAI---------KELVNDANFDCSAT-GFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 9 ~~~~k~i~~~l---------~~l~~~~~~~~~~~-gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
+..|+++++.+ +++++|+.|++.++ +++++|+|+||+|++.+.++.+. .+..+.|+.+.|.++
T Consensus 139 ~~~l~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~~~~-------~~~~~iiP~k~l~el 211 (378)
T 2avt_A 139 TKLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTS-------ADFMVVLPSKSLREF 211 (378)
T ss_dssp HHHHHHHHHHHGGGSCCCTTSGGGGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCC-------CCEEEEEEHHHHHHH
T ss_pred HHHHHHHHhheEEEEECCCCcceeEEEEEEECCCCeEEEEEecCeeEEEEEeccCCCC-------CccEEEEEhHHHHHH
Confidence 77899999875 45899999999999 99999999999999999887642 234678999998888
Q ss_pred hcccCC-CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccC
Q 024527 79 LKCAGN-DDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIG 155 (266)
Q Consensus 79 lk~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~ 155 (266)
.|.+.+ ++.+.|.++++ ++.|.+++. .|.++++|+.+|+| .+|. +++.++++++..|.++++|++.++
T Consensus 212 ~kll~~~~~~v~i~~~~~--~i~f~~~~~------~~~srLidg~fPdy~~viP~-~~~~~~~v~~~~l~~al~Rvs~ls 282 (378)
T 2avt_A 212 SAVFTDDIETVEVFFSPS--QILFRSEHI------SFYTRLLEGNYPDTDRLLMT-EFETEVVFNTQSLRHAMERAFLIS 282 (378)
T ss_dssp HHHSCTTCCEEEEEECSS--EEEEECSSE------EEEEECCCSCCCCCGGGSCC-CCSEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHhcccCCceEEEEEcCC--EEEEEECCE------EEEEEEecccCCChhhcCCC-CCCEEEEEEHHHHHHHHHHHHHHh
Confidence 888763 56799999754 888887665 89999999999998 5785 899999999999999999999987
Q ss_pred CE-----EEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEE-Ee-cCcEEEEEehHHHHhccccCCCCceEEE
Q 024527 156 DT-----VVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATII-EM-HEPVSLTFALRYMNSFTRATPLSNTVTI 227 (266)
Q Consensus 156 d~-----v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l 227 (266)
+. |++.++++.+++++.+ |.|++++++. + +. ++++++.||.+||.+++++++ +++|.+
T Consensus 283 ~~~~~~~v~l~~~~~~l~l~a~~~e~g~a~e~l~-------------~~~~~Ge~~~I~FN~~YL~d~L~~~~-~~~v~l 348 (378)
T 2avt_A 283 NATQNGTVKLEITQNHISAHVNSPEVGKVNEDLD-------------IVSQSGSDLTISFNPTYLIESLKAIK-SETVKI 348 (378)
T ss_dssp TTSTTCCEEEEEETTEEEEEEEETTTEEEEEECC-------------CSEEEECCEEEEECHHHHHHHHHTCC-SSEEEE
T ss_pred ccCCCceEEEEEeCCEEEEEEeCCCCceeEEEEe-------------eeeecCCeEEEEEcHHHHHHHHhcCC-CCEEEE
Confidence 54 9999999999999987 9999888772 2 23 678999999999999999998 999999
Q ss_pred EecCC-CcEEEEEEeCCcEEEEEEEcc-cC
Q 024527 228 SLSSE-LPVVVEYKIAEMGYIRFYLAP-KI 255 (266)
Q Consensus 228 ~~~~~-~Pl~l~~~i~~~g~~~~~iaP-r~ 255 (266)
+|+++ .|+.++.. ++++.+.|+|+| |+
T Consensus 349 ~~~~~~~p~~i~~~-~~~~~~~ylvmPvr~ 377 (378)
T 2avt_A 349 HFLSPVRPFTLTPG-DEEESFIQLITPVRT 377 (378)
T ss_dssp EECCTTSCEEEEET-TCCSEEEEEECCCCC
T ss_pred EECCCCCCEEEEcC-CCCCceEEEEEeeec
Confidence 99998 69999874 332378999999 54
No 23
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=99.94 E-value=2.2e-25 Score=201.07 Aligned_cols=216 Identities=13% Similarity=0.259 Sum_probs=185.8
Q ss_pred hhhHHHHHHH---------HHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEA---------IKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~---------l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
+..|+++++. .+++++++.|++.+++++++|+|+||+|+..+.++... .+..+.||.+.|.++.
T Consensus 132 ~~~L~~~I~~t~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~-------~~~~~iIP~k~l~el~ 204 (371)
T 3t0p_A 132 QFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENKLRVVSLDGHRISIRYIEMKNHY-------DSKKVVVPGKTLQEIS 204 (371)
T ss_dssp HHHHHHHHHTTGGGSCSSSSSTGGGEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEE-------EEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHhheeEEeeCCCCchhceEEEEEEECCEEEEEEecceEEEEEEeccCCCC-------CceEEEEEHHHHHHHH
Confidence 6788888886 45688999999999999999999999999988887431 2356899999999999
Q ss_pred cccC--CCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhccC
Q 024527 80 KCAG--NDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASIG 155 (266)
Q Consensus 80 k~~~--~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~~ 155 (266)
|.+. .++.+.|.++++ ++.|.+++. .+..+++|+.+|+| .+|+ +++.++++++.+|.++++|++.++
T Consensus 205 kll~~~~~~~V~i~~~~~--~i~f~~~~~------~~~srLidG~fPdy~~viP~-~~~~~~~v~r~~l~~al~Rvs~ls 275 (371)
T 3t0p_A 205 KIIPGSADEDVVIYITNN--HIVFEFENT------TVVSRLIEGEYFKIDQMLSS-DYDTKVRINKRELLDCIDRATLLV 275 (371)
T ss_dssp HHCCCCTTSEEEEEEETT--EEEEEETTE------EEEEECCCSCCCCCGGGCCC-CCSEEEEEEHHHHHHHHHHHHTTC
T ss_pred HhcCcCCCceEEEEEcCC--EEEEEECCE------EEEEEEecccCCChhhhccc-cCCEEEEEEHHHHHHHHHHHHHhh
Confidence 9886 357899999765 888888766 89999999999999 5886 999999999999999999999997
Q ss_pred C-----EEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEEe
Q 024527 156 D-----TVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTISL 229 (266)
Q Consensus 156 d-----~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~ 229 (266)
+ .|++.++++.+++++.+|.|++++++. ++. ++++++.||.+||.++++++. +++|.++|
T Consensus 276 ~e~~~~~V~l~~~~~~l~i~~~~~~g~a~E~i~-------------~~~~Ge~~~I~FN~~yLld~L~~~~-~~~v~l~~ 341 (371)
T 3t0p_A 276 KEGDKKPIIMNITDGNMELRINSFIGSMNEDID-------------IDKDGKDIMIGFNPKFFIDALRVID-EEEVNLYM 341 (371)
T ss_dssp CC-CCCCEEEEEETTEEEEEEECSSEEEEEEEE-------------CEEEECCEEEEECHHHHHHHHTTCC-CSEEEEEE
T ss_pred ccCCCceEEEEEeCCEEEEEEeCCCCcEEEEEE-------------EEecCCcEEEEEchHHHHHHHhCCC-CCeEEEEE
Confidence 4 499999999999999988899888872 444 678999999999999999998 89999999
Q ss_pred cCC-CcEEEEEEeCCcEEEEEEEcc-cCCC
Q 024527 230 SSE-LPVVVEYKIAEMGYIRFYLAP-KIEE 257 (266)
Q Consensus 230 ~~~-~Pl~l~~~i~~~g~~~~~iaP-r~~~ 257 (266)
++. .|+.++. + ++.+.|+|+| |+.+
T Consensus 342 ~~~~~p~~i~~--~-~~~~~~lvMPvrl~~ 368 (371)
T 3t0p_A 342 VNPKAPCFIKD--D-EGKFIYLILPVNFNT 368 (371)
T ss_dssp SCTTSCEEEEC--T-TSCEEEEECCCCC--
T ss_pred CCCCCcEEEEc--C-CCCeEEEEcceeccc
Confidence 987 5999985 3 4678899999 7764
No 24
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=99.93 E-value=1.3e-24 Score=196.72 Aligned_cols=215 Identities=16% Similarity=0.287 Sum_probs=184.5
Q ss_pred ChhhHHHHHHHHHhh---------hceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEAIKEL---------VNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l---------~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++.+.-. ++++.|++.+++++++|+|++|+|+..+.++.+ + +..+.++.+.+.++
T Consensus 142 ~~~~L~~~I~r~~~a~s~~e~r~~l~GV~l~~~~~~l~~vAtDg~rla~~~~~~~~~----~----~~~~iip~k~l~el 213 (378)
T 1vpk_A 142 DTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIENE----E----EASFLLSLKSMKEV 213 (378)
T ss_dssp EHHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETTEEEEEEECSSEEEEEEEECCCC----S----CEEEEEEHHHHHHH
T ss_pred CHHHHHHHHhheEEEEECCCCcceeeEEEEEEECCEEEEEEeCcccEEEEEEecCCC----C----cceEEEEchHHHHH
Confidence 377899999987644 457999999999999999999999998888653 1 25689999999988
Q ss_pred hcccCC-Cc-eEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhcc
Q 024527 79 LKCAGN-DD-IITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLASI 154 (266)
Q Consensus 79 lk~~~~-~d-~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~~ 154 (266)
+|.++. ++ .+.|.++++ ++.|.+++. .|.++++|+.+|+| .+|+ +++.+++++++.|.++++|++.+
T Consensus 214 ~k~L~~~~~~~V~i~~~~~--~i~f~~~~~------~~~srLidg~fPdy~~vip~-~~~~~~~v~~~~l~~al~Rv~~~ 284 (378)
T 1vpk_A 214 QNVLDNTTEPTITVRYDGR--RVSLSTNDV------ETVMRVVDAEFPDYKRVIPE-TFKTKVVVSRKELRESLKRVMVI 284 (378)
T ss_dssp HHHHHTCCCSEEEEEECSS--EEEEECSSE------EEEEECCSSCCCCGGGGSCS-CCSEEEEEEHHHHHHHHHHHHHH
T ss_pred HHhhccCCCceEEEEEcCC--EEEEEECCE------EEEEEeccccCCCHHHhccc-CCCeEEEEEHHHHHHHHHHHHHH
Confidence 888764 45 799999755 888887664 89999999999988 5786 99999999999999999999999
Q ss_pred CCE----EEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEEEE
Q 024527 155 GDT----VVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVTIS 228 (266)
Q Consensus 155 ~d~----v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~l~ 228 (266)
++. |++.++++.+++++.+ |.|++++++. ++. ++++++.||.+||.+++++++ +++|.++
T Consensus 285 s~~~~~~v~l~~~~~~l~i~a~~~d~g~a~e~l~-------------~~~~G~~~~i~fN~~yL~d~L~~~~-~~~v~l~ 350 (378)
T 1vpk_A 285 ASKGSESVKFEIEENVMRLVSKSPDYGEVVDEVE-------------VQKEGEDLVIAFNPKFIEDVLKHIE-TEEIEMN 350 (378)
T ss_dssp HTTTTCCEEEEECSSEEEEEEEETTTEEEEEEEE-------------CEEEECCEEEEECHHHHHHHHHHCC-SSEEEEE
T ss_pred hcCCCceEEEEEeCCEEEEEEcCCccceeEEEEE-------------EEecCCeEEEEEcHHHHHHHHhcCC-CCEEEEE
Confidence 865 9999999999999988 9999888872 333 678999999999999999998 9999999
Q ss_pred ecCC-CcEEEEEEeCCcEEEEEEEcc-cC
Q 024527 229 LSSE-LPVVVEYKIAEMGYIRFYLAP-KI 255 (266)
Q Consensus 229 ~~~~-~Pl~l~~~i~~~g~~~~~iaP-r~ 255 (266)
|+++ .|+.+++. +++.+.|+|+| |+
T Consensus 351 ~~~~~~p~~i~~~--~~~~~~~limP~r~ 377 (378)
T 1vpk_A 351 FVDSTSPCQINPL--DISGYLYIVMPIRL 377 (378)
T ss_dssp ESCTTSCEEEEET--TCCSEEEEECCBCC
T ss_pred ECCCCCCEEEEcC--CCCceEEEEEeecc
Confidence 9998 69999974 34678899999 65
No 25
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=99.93 E-value=2e-24 Score=196.57 Aligned_cols=223 Identities=17% Similarity=0.260 Sum_probs=188.0
Q ss_pred ChhhHHHHHHHH---------HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHH
Q 024527 8 QGSLLKKVLEAI---------KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKM 78 (266)
Q Consensus 8 ~~~~~k~i~~~l---------~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~i 78 (266)
++..|+++++.+ +++++++.|++.+++|+++|+|++|+|+..+.++.... +.+..+.|+.+.|.++
T Consensus 146 ~~~~L~~~I~~t~fA~s~de~rp~L~Gv~~~~~~~~l~~VATDghRLA~~~~~~~~~~~-----~~~~~~iIP~k~l~el 220 (408)
T 3p16_A 146 PAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSP-----DIEAAVLVPAKTLAEA 220 (408)
T ss_dssp CHHHHHHHHHHHTTSSCCSSSCCCSCEEEEEEETTEEEEEEECSSEEEEEEEECBCSSS-----SCEEEEEEEHHHHHHH
T ss_pred cHHHHHHHHhhheecccCccchhhceEEEEEEECCEEEEEEcCcceEEEEeccccccCC-----CCceeEEEEHHHHHHH
Confidence 377899999884 45689999999999999999999999999998875431 1235789999999999
Q ss_pred hcccCCCceEEEEEcCCC-----CeEEEEEeCCCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHh
Q 024527 79 LKCAGNDDIITLKADDGS-----DTVTFMFESPTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDL 151 (266)
Q Consensus 79 lk~~~~~d~l~l~~~~~~-----~~l~i~~~~~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~ 151 (266)
.|.+..++.+.|.+++++ .++.|.+++. .+.++|+|+.+|+| .+|+ +++.+++++..+|.++++|+
T Consensus 221 ~kll~~~~~V~i~~~~~~~~~~~~~i~f~~~~~------~~~srLIdG~fPdy~~vIP~-~~~~~v~v~r~~l~~al~Rv 293 (408)
T 3p16_A 221 AKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGK------RSTTRLLDAEFPKFRQLLPT-EHTAVATMDVAELIEAIKLV 293 (408)
T ss_dssp HHTCCSSSCEEEESCSSSSCCSSCCCEEECSSE------EEECCCCSSCCCCGGGTCCS-SCSEEEEEEHHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEcCCcccccceEEEEEECCE------EEEEEecccCCCChhhhCCC-CCCEEEEEEHHHHHHHHHHH
Confidence 998876788999997653 4777877665 89999999999998 6885 89999999999999999999
Q ss_pred hccCC---EEEEEEeCCeEEEEEE-ecceeEEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCCCceEE
Q 024527 152 ASIGD---TVVISVTKEGVKFSTR-GDIGTANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPLSNTVT 226 (266)
Q Consensus 152 ~~~~d---~v~i~~~~~~l~~s~~-gd~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~ls~~v~ 226 (266)
+.+++ .|++.++++.+++++. +|.|++++++. ++. ++++++.||.+||.++++++. +++|.
T Consensus 294 slls~~~~~V~l~~~~~~l~i~a~~~e~g~a~E~i~-------------~~~~Ge~l~I~FN~~YLlD~L~~i~-~e~V~ 359 (408)
T 3p16_A 294 ALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLV-------------VDYAGEPLTIAFNPTYLTDGLSSLR-SERVS 359 (408)
T ss_dssp HTTCCSSCCEEEEEETTEEEEEEECSSSCEEEEEEE-------------CEEEESCCEEEECHHHHHHHHHHSC-SSEEE
T ss_pred HhhhcCCceEEEEEeCCEEEEEEeCCCCceEEEEEE-------------EEEeCCcEEEEEeHHHHHHHHhccC-CCeEE
Confidence 99975 5999999999999998 58899988872 444 678999999999999999998 89999
Q ss_pred EEecCC-CcEEEEEEeCCc---------E-------EEEEEEcc-cCC
Q 024527 227 ISLSSE-LPVVVEYKIAEM---------G-------YIRFYLAP-KIE 256 (266)
Q Consensus 227 l~~~~~-~Pl~l~~~i~~~---------g-------~~~~~iaP-r~~ 256 (266)
++|++. .|+.|+..-+++ | .+.|+|+| |+.
T Consensus 360 l~~~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~limPvR~~ 407 (408)
T 3p16_A 360 FGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLP 407 (408)
T ss_dssp EEESCTTSCEEEEEECCC--------------CCSSSEEEEECCBCC-
T ss_pred EEECCCCCcEEEEeCCCCccccccccccccccCCCCcEEEEEEEeccC
Confidence 999987 699998753321 1 58899999 653
No 26
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.5e-21 Score=155.72 Aligned_cols=95 Identities=35% Similarity=0.752 Sum_probs=87.3
Q ss_pred CCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEEeCC
Q 024527 164 KEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAE 243 (266)
Q Consensus 164 ~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i~~ 243 (266)
++.+.|+++||+|++++.++.+.+.+++++.+.+++.++++.+|+++||.+|+|++++|++|+|+|+++.||+++|.++
T Consensus 106 kd~v~Fs~~GD~G~~~i~l~~~~~~dk~e~~v~ie~~e~v~~~fsl~YL~~f~Ka~~ls~~V~l~l~~~~Pl~l~y~i~- 184 (200)
T 3pge_A 106 GETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLK- 184 (200)
T ss_dssp -CCEEEEEECSSCEEEEEECCBCCSSSCTTCBEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSSCEEEEEEET-
T ss_pred CceEEEEeeccCCeEEEEEecCCCCCCcccceEEEeCCcceeeEhHHHHHHHhccccCCCeEEEEEcCCCCEEEEEEEC-
Confidence 5689999999999999999988888888888889999999999999999999999999999999999999999999997
Q ss_pred cEEEEEEEcccCCCCc
Q 024527 244 MGYIRFYLAPKIEEDE 259 (266)
Q Consensus 244 ~g~~~~~iaPr~~~~~ 259 (266)
.|++.||||||+++|+
T Consensus 185 ~G~l~f~LAPrie~~~ 200 (200)
T 3pge_A 185 SGFLQFFLAPKFNDEE 200 (200)
T ss_dssp TEEEEEEECCCCC---
T ss_pred CEEEEEEECCccCCCC
Confidence 6999999999999764
No 27
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.82 E-value=2e-19 Score=144.81 Aligned_cols=92 Identities=35% Similarity=0.743 Sum_probs=86.8
Q ss_pred CCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEEecCCCcEEEEEEeCC
Q 024527 164 KEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAE 243 (266)
Q Consensus 164 ~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~~~~~~Pl~l~~~i~~ 243 (266)
.+.+.|+++||+|++++.++++.+.+++++.+.+++.++++..|+++||.+|+|+.++|++|+|+|+++.||+++|.++
T Consensus 78 k~~vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~~~~~~~~fsl~yl~~~~ka~~~s~~v~l~~~~~~Pl~~~~~~~- 156 (169)
T 3l0w_B 78 GETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLK- 156 (169)
T ss_dssp -CCEEEEEECSSCEEEEEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSSCEEEEEEET-
T ss_pred cccccccccCcccceeEEEecCCCCCCcccceEEecCCcceEEEhHHHHHHHhccccCCCeEEEEEcCCCCEEEEEEEC-
Confidence 4689999999999999999998888888888899999999999999999999999999999999999999999999997
Q ss_pred cEEEEEEEcccCC
Q 024527 244 MGYIRFYLAPKIE 256 (266)
Q Consensus 244 ~g~~~~~iaPr~~ 256 (266)
+|++.||||||++
T Consensus 157 ~g~~~~~lAPri~ 169 (169)
T 3l0w_B 157 SGFLQFFLAPKFN 169 (169)
T ss_dssp TEEEEEEECCCCC
T ss_pred CEEEEEEEccccC
Confidence 6999999999986
No 28
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=99.41 E-value=1.5e-10 Score=104.38 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=146.7
Q ss_pred hhhHHHHHHHH---------HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEAI---------KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~l---------~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
...|++.++.+ .+++.++.|++.+++|+++|+|..+.+...+.... ..++-.+.|+.+.|.+++
T Consensus 19 ~~~L~~~l~~v~~av~~~~t~piL~gvll~~~~~~L~l~aTD~~~~~~~~i~~~~-------~~~~g~i~vpak~l~ei~ 91 (378)
T 1vpk_A 19 TLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAE-------ISGEARFVVPGDVIQKMV 91 (378)
T ss_dssp HHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSE-------EEECEEEEEEC-CHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCChhHhCCEEEEEECCEEEEEEEcCceEEEEEEEEEE-------ccCceEEEEEhHHHHHHH
Confidence 55677777664 45789999999999999999999988877654421 012357899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhccC-C-
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASIG-D- 156 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~-d- 156 (266)
|.+.+ +.+.++.+++ ++.|+.++. .|.+++++. ++|++ |..++...+.++++.|++++++..... +
T Consensus 92 r~Lp~-~~V~i~~~~~--~l~i~~g~~------~f~l~~l~~~~fP~~--~~~~~~~~~~i~~~~L~~~I~r~~~a~s~~ 160 (378)
T 1vpk_A 92 KVLPD-EITELSLEGD--ALVISSGST------VFRITTMPADEFPEI--TPAESGITFEVDTSLLEEMVEKVIFAAAKD 160 (378)
T ss_dssp TTCCS-SEEEEEEETT--EEEEEETTE------EEEEECBCCTTSCCC--CCCCSSEEEEEEHHHHHHHHHHHGGGSCCC
T ss_pred HhCCC-CcEEEEEeCC--EEEEEECCE------EEEEcccChHHCCCC--CCCCCceEEEECHHHHHHHHhheEEEEECC
Confidence 99975 5788888755 788877655 899999876 44544 445667799999999999999998875 2
Q ss_pred -------EEEEEEeCCeEEEEEEe-cceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCC-Cc-eEE
Q 024527 157 -------TVVISVTKEGVKFSTRG-DIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPL-SN-TVT 226 (266)
Q Consensus 157 -------~v~i~~~~~~l~~s~~g-d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~l-s~-~v~ 226 (266)
.|.+.++++.+++.|.. ... +...+. +....+.++.++.+||..++|.++- .+ +|.
T Consensus 161 e~r~~l~GV~l~~~~~~l~~vAtDg~rl-a~~~~~-------------~~~~~~~~~iip~k~l~el~k~L~~~~~~~V~ 226 (378)
T 1vpk_A 161 EFMRNLNGVFWELHKNLLRLVASDGFRL-ALAEEQ-------------IENEEEASFLLSLKSMKEVQNVLDNTTEPTIT 226 (378)
T ss_dssp TTCTTTSEEEEEEETTEEEEEEECSSEE-EEEEEE-------------CCCCSCEEEEEEHHHHHHHHHHHHTCCCSEEE
T ss_pred CCcceeeEEEEEEECCEEEEEEeCcccE-EEEEEe-------------cCCCCcceEEEEchHHHHHHHhhccCCCceEE
Confidence 38999999999998763 322 222221 1111226889999999999998753 35 899
Q ss_pred EEecCCCcEEEEEEeC
Q 024527 227 ISLSSELPVVVEYKIA 242 (266)
Q Consensus 227 l~~~~~~Pl~l~~~i~ 242 (266)
+.++++ .+.+..+
T Consensus 227 i~~~~~---~i~f~~~ 239 (378)
T 1vpk_A 227 VRYDGR---RVSLSTN 239 (378)
T ss_dssp EEECSS---EEEEECS
T ss_pred EEEcCC---EEEEEEC
Confidence 999875 3444444
No 29
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=98.79 E-value=4.9e-06 Score=75.46 Aligned_cols=193 Identities=15% Similarity=0.160 Sum_probs=136.5
Q ss_pred hhhHHHHHHHHHhhh---------ceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEAIKELV---------NDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~---------~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
...|.+.++.+.+++ .++.|++.+++|+++|.|..-.... .++.+ ++++-.+.|+.+.|.+++
T Consensus 25 r~~L~~aL~~v~~~v~~r~t~PIL~~ili~a~~~~L~ltatDlei~i~~--~i~a~------v~e~G~i~v~ak~l~dIv 96 (408)
T 3p16_A 25 RESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEA--QVGAE------IVSPGSVLVSGRLLSDIT 96 (408)
T ss_dssp HHHHHHHHHHHTTSSCSCCSSGGGSEEEEEECSSEEEEEECCSSCCEEE--EEECC------CSBCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCCCCChHHhCcEEEEEECCEEEEEEECCceEEEE--EEEEE------ecCCeEEEEEHHHHHHHH
Confidence 567777787776654 5999999999999999996443333 34432 244567899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecC-CCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDID-SEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D 156 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~-~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d 156 (266)
|.+.++ .+.|+.+++ ++.|+.+.. +|.++.++++ +|.+ |..+-. .+.+++..|+++++...-. + |
T Consensus 97 r~Lp~~-~I~l~~~~~--~l~I~~g~s------~f~L~~l~~~dfP~l--p~~~~~-~~~i~~~~L~~~I~~t~fA~s~d 164 (408)
T 3p16_A 97 RALPNK-PVDVHVEGN--RVALTCGNA------RFSLPTMPVEDYPTL--PTLPEE-TGLLPAELFAEAISQVAIAAGRD 164 (408)
T ss_dssp HHSCSS-EEEEEEETT--EEEEEBTTE------EEEEEEECTTTSCCC--CCCCCE-EEEECHHHHHHHHHHHTTSSCCS
T ss_pred HhCCCC-cEEEEEeCC--EEEEEECCE------EEEEecCCHHHCCCC--CCCCCc-EEEEcHHHHHHHHhhheecccCc
Confidence 999864 588888643 777765443 8999999874 4544 333333 7899999999999998653 2 1
Q ss_pred -------EEEEEEeCCeEEEEEEeccee-EEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhccccCCCCceEEEE
Q 024527 157 -------TVVISVTKEGVKFSTRGDIGT-ANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTIS 228 (266)
Q Consensus 157 -------~v~i~~~~~~l~~s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~~~ls~~v~l~ 228 (266)
-|.+.++++.+++-|. |.-. +...+.. .. . . .+.+.++....+.|..+.|.+.-.+.|.|.
T Consensus 165 e~rp~L~Gv~~~~~~~~l~~VAT-DghRLA~~~~~~----~~-~-~----~~~~~~~iIP~k~l~el~kll~~~~~V~i~ 233 (408)
T 3p16_A 165 DTLPMLTGIRVEILGETVVLAAT-DRFRLAVRELKW----SA-S-S----PDIEAAVLVPAKTLAEAAKAGIGGSDVRLS 233 (408)
T ss_dssp SSCCCSCEEEEEEETTEEEEEEE-CSSEEEEEEEEC----BC-S-S----SSCEEEEEEEHHHHHHHHHTCCSSSCEEEE
T ss_pred cchhhceEEEEEEECCEEEEEEc-CcceEEEEeccc----cc-c-C----CCCceeEEEEHHHHHHHHHhcCCCCcEEEE
Confidence 4888889999988775 3222 2222210 00 0 0 012357889999999999987646799999
Q ss_pred ecCC
Q 024527 229 LSSE 232 (266)
Q Consensus 229 ~~~~ 232 (266)
++++
T Consensus 234 ~~~~ 237 (408)
T 3p16_A 234 LGTG 237 (408)
T ss_dssp SCSS
T ss_pred EcCC
Confidence 9985
No 30
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=98.74 E-value=7.1e-06 Score=73.53 Aligned_cols=192 Identities=10% Similarity=0.164 Sum_probs=136.3
Q ss_pred hhhHHHHHHHHH---------hhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEAIK---------ELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~l~---------~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
...|.+.+..+. +++.++.+++.+++|+++|.|.. +.+ ...++.+ +.++-.+.|+.+.|.+++
T Consensus 8 r~~L~~~l~~v~~~v~~r~t~pIL~~ili~a~~~~L~ltatD~e-i~i-~~~i~a~------v~~~G~~~v~ak~l~div 79 (371)
T 3t0p_A 8 KANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDME-LGI-ETIIDGT------IEERGIIALDAKIFSEIV 79 (371)
T ss_dssp HHHHHHHHHHHGGGSCSSCSSGGGGEEEEEESSSSEEEEEECSS-EEE-EEEECCE------EEECEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCChHHhCCEEEEEECCEEEEEEeCcE-EEE-EEEEEEE------EccCeEEEEEHHHHHHHH
Confidence 445566666654 46789999999999999999954 433 3345542 344567899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C-C
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-D 156 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-d 156 (266)
|.+.++ .+.++.+++ ..+.|+.+.. +|.++.+++ ++|.+ |..+....+.+++..|+++++...-. + |
T Consensus 80 r~Lp~~-~i~l~~~~~-~~l~I~~g~s------~f~l~~~~~~dfP~l--p~~~~~~~~~i~~~~L~~~I~~t~fA~s~d 149 (371)
T 3t0p_A 80 RKLPDN-DVTIETDAS-FKTVISCEKA------KFNIIGKSGDDFSYI--PYVERNESIVLSQFTLKEVIRQTIFSIADN 149 (371)
T ss_dssp HHSCSS-EEEEEECTT-CEEEEEETTE------EEEEECBCGGGSCCC--CCCCCCSEEEEEHHHHHHHHHTTGGGSCSS
T ss_pred HhCCCC-cEEEEECCC-CeEEEEECCE------EEEEccCCHHHCCCC--CCCCCCeEEEECHHHHHHHHhheeEEeeCC
Confidence 999755 588888643 4787776544 899999987 45554 44455568999999999999987643 3 2
Q ss_pred -------EEEEEEeCCeEEEEEEeccee-EEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCC--CCceE
Q 024527 157 -------TVVISVTKEGVKFSTRGDIGT-ANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATP--LSNTV 225 (266)
Q Consensus 157 -------~v~i~~~~~~l~~s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~--ls~~v 225 (266)
-|.+.++++.+++-|. |.-. +...+. +.. .++.++....+.|..+.|.++ ..+.|
T Consensus 150 e~r~~L~Gv~~~~~~~~l~~vAT-Dg~RLa~~~~~-------------~~~~~~~~~~iIP~k~l~el~kll~~~~~~~V 215 (371)
T 3t0p_A 150 DNNKLMTGELFEIEENKLRVVSL-DGHRISIRYIE-------------MKNHYDSKKVVVPGKTLQEISKIIPGSADEDV 215 (371)
T ss_dssp SSSTGGGEEEEEEEEEEEEEEEE-CSSEEEEEEEE-------------EEEEEEEEEEEEEHHHHHHHHHHCCCCTTSEE
T ss_pred CCchhceEEEEEEECCEEEEEEe-cceEEEEEEec-------------cCCCCCceEEEEEHHHHHHHHHhcCcCCCceE
Confidence 4788888888888765 3222 111110 111 134578899999999999875 35799
Q ss_pred EEEecCC
Q 024527 226 TISLSSE 232 (266)
Q Consensus 226 ~l~~~~~ 232 (266)
.|.++++
T Consensus 216 ~i~~~~~ 222 (371)
T 3t0p_A 216 VIYITNN 222 (371)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9999876
No 31
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=98.72 E-value=2.6e-05 Score=69.72 Aligned_cols=193 Identities=10% Similarity=0.096 Sum_probs=133.3
Q ss_pred hhhHHHHHHHH---------HhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHh
Q 024527 9 GSLLKKVLEAI---------KELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKML 79 (266)
Q Consensus 9 ~~~~k~i~~~l---------~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~il 79 (266)
...|.+.+..+ .+++.++.+++.+++|++.|.|.. +. +...++.. ++.++-.+.|+.+.|.+++
T Consensus 7 ~~~L~~~l~~v~~~v~~r~t~piL~~ili~a~~~~L~l~atD~e-i~-i~~~i~~~-----~v~~~G~~~v~ak~l~div 79 (366)
T 3d1g_A 7 REHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLE-ME-MVARVALV-----QPHEPGATTVPARKFFDIC 79 (366)
T ss_dssp HHHHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSS-EE-EEEEEECC-----SCCBCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCChhHhcCeEEEEeCCcEEEEEecce-EE-EEEEEEcc-----eeccCeEEEEEhHHHHHHH
Confidence 44555555554 346889999999999999999965 33 34445441 1344567899999999999
Q ss_pred cccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecC-CCCCCCCcceeeEEEEEehHHHHHHHHHhhcc-C--
Q 024527 80 KCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDID-SEHLGIPEAEYHAIVRMPSAEFARICKDLASI-G-- 155 (266)
Q Consensus 80 k~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~-~~~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~-~-- 155 (266)
|.+.+++.+.++.+++ .+.|+-+.. +|.++.++.+ +|.+ |..+....+.++++.|+++++...-. +
T Consensus 80 r~Lp~~~~i~~~~~~~--~l~I~~g~s------~f~l~~~~~~~fP~~--~~~~~~~~~~i~~~~l~~~i~~t~fA~s~d 149 (366)
T 3d1g_A 80 RGLPEGAEIAVQLEGE--RMLVRSGRS------RFSLSTLPAADFPNL--DDWQSEVEFTLPQATMKRLIEATQFSMAHQ 149 (366)
T ss_dssp HHSCTTCEEEEEEETT--EEEEEETTE------EEEEECBCGGGSCCC--CCCCCSEEEEECHHHHHHHHHHHGGGSCSS
T ss_pred HcCCCCCcEEEEEeCC--EEEEEECCE------EEEEcCCCHHHCCCC--CCCCCceEEEECHHHHHHHHhheeEEeccC
Confidence 9998666799988755 677766544 8999999874 4543 43344468999999999999987643 2
Q ss_pred ------CEEEEEEeCCeEEEEEEeccee-EEEEEeecccCCCCCCceEEEe-cCcEEEEEehHHHHhccccCCC-CceEE
Q 024527 156 ------DTVVISVTKEGVKFSTRGDIGT-ANIVLRQNTTVDKPEEATIIEM-HEPVSLTFALRYMNSFTRATPL-SNTVT 226 (266)
Q Consensus 156 ------d~v~i~~~~~~l~~s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~yL~~~~k~~~l-s~~v~ 226 (266)
.-|.+.++++.+++-|. |.-. +...+. +.. ....++....+.|..+.|.+.- .+.|.
T Consensus 150 e~r~~L~Gv~~~~~~~~l~~vAT-Dg~RLa~~~~~-------------~~~~~~~~~~iiP~k~l~el~kll~~~~~~v~ 215 (366)
T 3d1g_A 150 DVRYYLNGMLFETEGEELRTVAT-DGHRLAVCSMP-------------IGQSLPSHSVIVPRKGVIELMRMLDGGDNPLR 215 (366)
T ss_dssp CSSGGGSEEEEEEEEEEEEEEEE-CSSEEEEEEEE-------------EEEEEEEEEEEEEHHHHHHHHHTCCSSSCCEE
T ss_pred CCccceEEEEEEEeCCEEEEEEe-CCccEEEEEec-------------cCCCCcccEEEEEHHHHHHHHHhcccCCccEE
Confidence 15788888888888765 3222 111111 110 0125667788999888888753 45799
Q ss_pred EEecCC
Q 024527 227 ISLSSE 232 (266)
Q Consensus 227 l~~~~~ 232 (266)
+.++++
T Consensus 216 i~~~~~ 221 (366)
T 3d1g_A 216 VQIGSN 221 (366)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 999765
No 32
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=98.69 E-value=1.9e-05 Score=70.90 Aligned_cols=206 Identities=12% Similarity=0.169 Sum_probs=137.5
Q ss_pred CeeEEEcChhhHHHHHHHHH---------hhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCC-cceeeeCCcEEEEE
Q 024527 1 MLELRLVQGSLLKKVLEAIK---------ELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEG-FEHYRCDRNISMGM 70 (266)
Q Consensus 1 mf~a~~~~~~~~k~i~~~l~---------~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~-F~~y~~~~~~~~gi 70 (266)
|++.++. ...|.+.+..+. +++.++.+++.+++|+++|.|.. +.+ ...++.+. =..-.+.++-.+.|
T Consensus 1 mMkf~i~-~~~L~~~l~~v~~~v~~r~t~PiL~~ill~a~~~~L~ltatD~e-i~i-~~~i~~~~~~~~~~v~~~G~~~v 77 (378)
T 2avt_A 1 MIQFSIN-RTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQ-ISI-ENTIPVSNENAGLLITSPGAILL 77 (378)
T ss_dssp CCEEEEE-HHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSS-EEE-EEEEEC-----CEEEEECEEEEE
T ss_pred CEEEEEE-HHHHHHHHHHHHhhcCCCCChhHhcCeEEEEECCEEEEEEECCe-EEE-EEEEecccccccceeccCeEEEE
Confidence 7788776 555666666644 45788999999999999999965 332 34444310 00112334556899
Q ss_pred EhhhHHHHhcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeec-CCCCCCCCcceeeEEEEEehHHHHHHHH
Q 024527 71 NLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI-DSEHLGIPEAEYHAIVRMPSAEFARICK 149 (266)
Q Consensus 71 ~l~~L~~ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~-~~~~~~ip~~~~~~~i~~~s~~~~~~i~ 149 (266)
+.+.|.+++|.+.+ +.+.++.+++ ..+.|+-+.. +|.++.++. ++|.+ |..+....+.++++.|+++++
T Consensus 78 ~ak~l~divr~Lp~-~~v~~~~~~~-~~l~I~~g~s------~f~l~~~~~~~fP~l--~~~~~~~~~~i~~~~l~~~i~ 147 (378)
T 2avt_A 78 EASFFINIISSLPD-ISINVKEIEQ-HQVVLTSGKS------EITLKGKDVDQYPRL--QEVSTENPLILKTKLLKSIIA 147 (378)
T ss_dssp EHHHHHHHHHHCSS-SEEEEEEETT-TEEEEEETTE------EEEEECBCGGGSCCC--CCCCCSSCEEEEHHHHHHHHH
T ss_pred EhHHHHHHHHhCCC-CcEEEEECCC-CEEEEEECCE------EEEEccCCHHHCCCC--CCCCCCeEEEECHHHHHHHHh
Confidence 99999999999975 4688887544 2677766544 899999986 44543 333334578999999999999
Q ss_pred Hhhcc-C-C-------EEEEEEeCC-eEEEEEEeccee-EEEEEeecccCCCCCCceEEEecCcEEEEEehHHHHhcccc
Q 024527 150 DLASI-G-D-------TVVISVTKE-GVKFSTRGDIGT-ANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRA 218 (266)
Q Consensus 150 ~~~~~-~-d-------~v~i~~~~~-~l~~s~~gd~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yL~~~~k~ 218 (266)
...-. + | -|.+.++++ .+++-|. |.-. +...+.. +.+ .++.++....+.|..+.|.
T Consensus 148 ~t~fA~s~de~r~~L~Gv~~~~~~~~~l~~vAT-Dg~RLa~~~~~~----~~~--------~~~~~~iiP~k~l~el~kl 214 (378)
T 2avt_A 148 ETAFAASLQESRPILTGVHIVLSNHKDFKAVAT-DSHRMSQRLITL----DNT--------SADFMVVLPSKSLREFSAV 214 (378)
T ss_dssp HHGGGSCCCTTSGGGGEEEEEEETTTEEEEEEE-CSSEEEEEEEEC----SSC--------CCCEEEEEEHHHHHHHHHH
T ss_pred heEEEEECCCCcceeEEEEEEECCCCeEEEEEe-cCeeEEEEEecc----CCC--------CCccEEEEEhHHHHHHHHh
Confidence 87653 2 1 588888988 9988775 3222 2222210 000 1235667788888888887
Q ss_pred CC-CCceEEEEecCC
Q 024527 219 TP-LSNTVTISLSSE 232 (266)
Q Consensus 219 ~~-ls~~v~l~~~~~ 232 (266)
++ ..+.|.+.++++
T Consensus 215 l~~~~~~v~i~~~~~ 229 (378)
T 2avt_A 215 FTDDIETVEVFFSPS 229 (378)
T ss_dssp SCTTCCEEEEEECSS
T ss_pred cccCCceEEEEEcCC
Confidence 75 246799999765
No 33
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=97.92 E-value=0.0005 Score=57.79 Aligned_cols=96 Identities=19% Similarity=0.294 Sum_probs=77.6
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCce
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDI 87 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~ 87 (266)
+.+.|+++++-++.+-+++.+.++++++++.+-.....+-..+.-..+.+.+|+|.+++.++.|++.|.++||.+.-.+.
T Consensus 137 ~~~~l~~a~~r~~~ls~~V~l~~~~~~l~ls~~~d~g~~~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s~~ 216 (249)
T 1iz5_A 137 LGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADE 216 (249)
T ss_dssp EHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSCEEEEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCTTCE
T ss_pred EHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCceEEEEEccCCCccEEEEcCCceEEEEeHHHHHHHhhhccCCCe
Confidence 36899999999999999999999999999998554444444443334556789988899999999999999999875788
Q ss_pred EEEEEcCCCCeEEEEEe
Q 024527 88 ITLKADDGSDTVTFMFE 104 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~~ 104 (266)
+.|.+.++ .++.++..
T Consensus 217 V~l~~~~~-~p~~i~~~ 232 (249)
T 1iz5_A 217 VTIKFGNE-MPMQMEYY 232 (249)
T ss_dssp EEEEECTT-CCEEEEEE
T ss_pred EEEEEcCC-CCEEEEEE
Confidence 99999854 68888764
No 34
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=97.91 E-value=0.00042 Score=58.82 Aligned_cols=112 Identities=9% Similarity=0.151 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeC-CcEEEEEEhhhHHHHhcccCCCce
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCD-RNISMGMNLNNVSKMLKCAGNDDI 87 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~-~~~~~gi~l~~L~~ilk~~~~~d~ 87 (266)
++.|+++++.++.+-+.+.+.++++++++.+-....-+-..+.-.++...+++|. +++++..+++.|..++|.++..+.
T Consensus 138 s~~f~~~i~~~~~~sd~V~i~~~~~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~~s~~ 217 (259)
T 3lx2_A 138 AGALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLADADE 217 (259)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECSSCEEEEEECSSCEEEEEECTTSTTEEEEEESSSCEEEEEEHHHHHHHHSSSCTTSE
T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCcEEEEEEcCCCCceEEEEecCceEEEEEEHHHHHhhhccccCCCe
Confidence 7899999999999999999999999999999643333434443345567789998 999999999999999999877789
Q ss_pred EEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeec
Q 024527 88 ITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI 121 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~ 121 (266)
+.|.++.+ .++.+++.-...|..+.|-.|.++.
T Consensus 218 V~l~~~~~-~Pl~l~~~i~~~g~~~y~laP~~~~ 250 (259)
T 3lx2_A 218 VIIRFGFD-IPLLLKYMVRDAGEVSFLIAPRVEE 250 (259)
T ss_dssp EEEEECTT-SCEEEEEEETTTEEEEEEECCCC--
T ss_pred EEEEeCCC-CCEEEEEEeCCCeEEEEEEccccCC
Confidence 99999754 4777765532335565666555543
No 35
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=97.77 E-value=0.00077 Score=57.01 Aligned_cols=113 Identities=8% Similarity=0.177 Sum_probs=85.8
Q ss_pred EEEcChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEec-------CCCcceeeeCCcEEEEEEhhhHH
Q 024527 4 LRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLR-------SEGFEHYRCDRNISMGMNLNNVS 76 (266)
Q Consensus 4 a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~-------~~~F~~y~~~~~~~~gi~l~~L~ 76 (266)
++++ .+.|+++++-++.+-+.+.+.++++++.+.+.. -.+-+...++ ++.+.+|+|.+++.++.+++.|.
T Consensus 137 i~~~-~~~l~~ai~r~~~~s~~v~i~~~~~~l~ls~~~--d~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~f~~~yL~ 213 (261)
T 1u7b_A 137 VKMP-SGEFARICRDLSHIGDAVVISCAKDGVKFSASG--ELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLN 213 (261)
T ss_dssp EEEE-HHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEE--TTEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHH
T ss_pred EEEE-HHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEe--cCceEEEEEecCCCCCCCccceEEecCCcEEEEEeHHHHH
Confidence 4444 688999999999999999999999999999853 3444566665 45667899988999999999999
Q ss_pred HHhcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeee
Q 024527 77 KMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120 (266)
Q Consensus 77 ~ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~ 120 (266)
.+||.+.-.+.+.|.+.+ ..++.+++.-...|..+.|-.|.++
T Consensus 214 ~~lka~~~s~~V~i~~~~-~~P~~l~~~~~~~~~~~y~l~P~i~ 256 (261)
T 1u7b_A 214 FFTKATPLSSTVTLSMSA-DVPLVVEYKIADMGHLKYYLAPKIE 256 (261)
T ss_dssp HHGGGGGGCSEEEEEECT-TSCEEEEEEETTTEEEEEEECCBC-
T ss_pred HHhCcccCCCeEEEEECC-CCCEEEEEEeCCCcEEEEEECCcCc
Confidence 999988656889999986 4688887643222444444446655
No 36
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=97.77 E-value=0.00099 Score=56.26 Aligned_cols=108 Identities=11% Similarity=0.203 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEec-------CCCcceeeeCCcEEEEEEhhhHHHHhcc
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLR-------SEGFEHYRCDRNISMGMNLNNVSKMLKC 81 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~-------~~~F~~y~~~~~~~~gi~l~~L~~ilk~ 81 (266)
.+.|+++++-++.+-+.+.+.++++++.+.+-. -.+-+...++ ++.+.+|+|.+++.++.+++.|..++|.
T Consensus 141 ~~~l~~av~r~~~~s~~v~i~~~~~~l~ls~~~--d~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~f~~~yL~~~lka 218 (258)
T 1plq_A 141 SSEFSKIVRDLSQLSDSINIMITKETIKFVADG--DIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKG 218 (258)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEC--SSCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEc--cCceEEEEEecCCCCCCCccceEEecCCcEEEEEEHHHHHHHhcc
Confidence 689999999999999999999999999999854 3333455554 3456679998899999999999999998
Q ss_pred cCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeee
Q 024527 82 AGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120 (266)
Q Consensus 82 ~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~ 120 (266)
+.-.+.+.|.+..+ .++.+++.-. .|..+.|-.|.++
T Consensus 219 ~~~s~~V~i~~~~~-~Pl~l~~~~~-~~~~~y~l~P~~~ 255 (258)
T 1plq_A 219 SSLSDRVGIRLSSE-APALFQFDLK-SGFLQFFLAPKFN 255 (258)
T ss_dssp GGTCSEEEEEECSS-SCEEEEEEET-TEEEEEEECCCSS
T ss_pred ccCCceEEEEECCC-CCEEEEEEEC-CeEEEEEECCcCC
Confidence 87578899999854 6888877433 2444444445554
No 37
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=97.75 E-value=0.0012 Score=55.62 Aligned_cols=103 Identities=9% Similarity=0.096 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc-ccCCCce
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK-CAGNDDI 87 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk-~~~~~d~ 87 (266)
+..|+++++.+..+-+.+.+.++++++.+.+-.....+-+.+...++ ...++|.++.+....++.|..+.| .+.-.+.
T Consensus 140 s~~f~~~~~dl~~~sd~v~i~~~~~~~~f~~~gd~~~~~~~~~~~~~-l~~~~~~~~~~~~fsl~yL~~~~K~a~~ls~~ 218 (249)
T 3fds_C 140 ESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKP-LKELSIDTSASSSYSAEMFKDAVKGLRGFSAP 218 (249)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTEEEEEEEETTEEEEEEEEETBE-ESEEEESSCCEEEEEHHHHHHHHHTTTTCCSC
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCEEEEEEEecCcEEEEEEcCCCC-cEEEEcCCceEEEEEHHHHHHHHhhhcccCCE
Confidence 78999999999999999999999999999987666667677777765 568899999999999999999999 8887889
Q ss_pred EEEEEcCCCCeEEEEEeCCCCCeEEE
Q 024527 88 ITLKADDGSDTVTFMFESPTQDKIAD 113 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~~~~~~~~~~~ 113 (266)
++|.+..+. +|.+++.-.+.|.++.
T Consensus 219 V~i~~~~~~-Pl~l~y~i~~~G~l~f 243 (249)
T 3fds_C 219 TMVSFGENL-PMKIDVEAVSGGHMIF 243 (249)
T ss_dssp EEEEECTTC-CEEEEEECTTSCEEEE
T ss_pred EEEEecCCc-CEEEEEEeCCCcEEEE
Confidence 999997554 7777776444455433
No 38
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=97.73 E-value=0.0012 Score=56.12 Aligned_cols=111 Identities=12% Similarity=0.196 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHhhh-ceeeEEEeCCceEEEEECCCCeEEEEEEecC-----CCcceeeeCCcEEEEEEhhhHHHHhccc
Q 024527 9 GSLLKKVLEAIKELV-NDANFDCSATGFSLQAMDSSHVALVALLLRS-----EGFEHYRCDRNISMGMNLNNVSKMLKCA 82 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~-~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~-----~~F~~y~~~~~~~~gi~l~~L~~ilk~~ 82 (266)
++.|+++++.++.+- +.+.+.++++++++.+.... .-+...++. +....++|.+++++..+++.|..++|.+
T Consensus 145 s~~f~~~i~~~~~~s~d~V~i~~~~~~v~~ss~gd~--G~~~~~l~~~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~ 222 (265)
T 3p91_A 145 SAEFLKITKDFSALGDDSITIGCTKNEVTLTTKGAM--CETCMTLSALENVDSNGLQIEHNKDVTASFALKQISEFAKSA 222 (265)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEECSSEEEEEEECSS--CEEEEEEEC-------CCEEEESSCEEEEEEHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCEEEEEEEecC--ceEEEEEecCCCCCCceEEEEcCCcEEEEEEHHHHHHhhccc
Confidence 789999999999998 89999999999999986433 334455553 4567889999999999999999999988
Q ss_pred CCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeecCC
Q 024527 83 GNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDS 123 (266)
Q Consensus 83 ~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~~~ 123 (266)
+-.+.+.|.++.+ .++.+++.- +.|..+.|--|.++.+.
T Consensus 223 ~ls~~V~i~~~~~-~Pl~l~~~i-~~g~~~f~lAPri~~~~ 261 (265)
T 3p91_A 223 PLADNVKLSLSGQ-APLIMEFKG-EACVLKFYLAPKFDEED 261 (265)
T ss_dssp GGCSEEEEEECSS-SCEEEEEEE-TTEEEEEEECCBC----
T ss_pred ccCCEEEEEeCCC-ccEEEEEEE-CCEEEEEEEcCCCCCcc
Confidence 7678999999754 477776654 44666666666666543
No 39
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=97.72 E-value=0.0011 Score=55.49 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHHhh-hceeeEEEeCCceEEEEECCCCeEEEEEEec--CCCcceeeeCCcEEEEEEhhhHHHHhcccCC
Q 024527 8 QGSLLKKVLEAIKEL-VNDANFDCSATGFSLQAMDSSHVALVALLLR--SEGFEHYRCDRNISMGMNLNNVSKMLKCAGN 84 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l-~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~--~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~ 84 (266)
+.+.|+++++-++.+ -+++.+.++++++++.+-.... -+...++ .+.+.+|++ +++.++.|++.|..+||.+.-
T Consensus 135 ~~~~l~~a~~r~~~l~s~~V~l~~~~~~l~ls~~~d~g--~~~~~l~~~~~~~~~~~g-e~~~i~Fn~~yL~d~lk~~~~ 211 (246)
T 3aiz_C 135 LTVTFTDIIDEIEDIGGDSITFKAEGGKLYLSANSDMG--SSTIELSTENGGLLESEG-GDAESVYGLEYVVNTSKMRKP 211 (246)
T ss_dssp EHHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEECSSC--EEEEEECTTTTSCSEEEE-CCEEEEEEHHHHHTTGGGTTT
T ss_pred EHHHHHHHHHHHhhCCCCEEEEEEECCEEEEEEEcCCc--eEEEEEecCCCccEEEEE-eeEEEEEEHHHHHHHhhhccC
Confidence 368999999999988 8899999999999999854333 3445554 344567888 679999999999999999875
Q ss_pred CceEEEEEcCCCCeEEEEEe
Q 024527 85 DDIITLKADDGSDTVTFMFE 104 (266)
Q Consensus 85 ~d~l~l~~~~~~~~l~i~~~ 104 (266)
.+.+.|.+.++ .++.++..
T Consensus 212 s~~V~l~~~~~-~p~~i~~~ 230 (246)
T 3aiz_C 212 SDTVEIAFGSQ-IPLKLRYN 230 (246)
T ss_dssp CSEEEEEEETT-EEEEEEEE
T ss_pred CCeEEEEecCC-CcEEEEEE
Confidence 78899999854 68888764
No 40
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=97.72 E-value=0.00091 Score=57.19 Aligned_cols=106 Identities=10% Similarity=0.192 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecC-------CCcceeeeCCcEEEEEEhhhHHHHhcc
Q 024527 9 GSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRS-------EGFEHYRCDRNISMGMNLNNVSKMLKC 81 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~-------~~F~~y~~~~~~~~gi~l~~L~~ilk~ 81 (266)
.+.|+++++.++.+-+.+.+.++++++++.+.. -.+-+...++. +.+.+|+|.+++.++.+++.|..+||.
T Consensus 161 ~~~l~~av~r~~~~sd~V~i~~~~~~l~lsa~g--d~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~fn~~YL~d~lka 238 (276)
T 2zvv_A 161 SNEFSRICKDLSSIGDTVVISVTKEGVKFSTAG--DIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKA 238 (276)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEE--TTEEEEEEECCCSSCCSGGGCCEEEESSCEEEEEEHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCEEEEEEEe--eccEEEEEEccCCCCCCccccEEEecCCcEEEEEEHHHHHHHhcc
Confidence 689999999999999999999999999999853 34445666663 445679988899999999999999998
Q ss_pred cCCCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEe
Q 024527 82 AGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMK 117 (266)
Q Consensus 82 ~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~ 117 (266)
+.-.+.+.|.+..+ .++.+++.-...|..+.|-.|
T Consensus 239 ~~ls~~V~i~l~~~-~Pl~l~~~~~~~g~~~y~laP 273 (276)
T 2zvv_A 239 TPLSDTVTISLSSE-LPVVVEYKVAEMGYIRYYLAP 273 (276)
T ss_dssp GGGCSEEEEEECTT-SCEEEEEEETTTEEEEEEECC
T ss_pred ccCCCEEEEEEcCC-ceEEEEEEeCCCcEEEEEEcc
Confidence 87568899999844 688887753212334444433
No 41
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=97.68 E-value=0.00037 Score=59.39 Aligned_cols=110 Identities=12% Similarity=0.235 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEe-CCceEEEEE-----CCC-CeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCS-ATGFSLQAM-----DSS-HVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~-~~gl~~~a~-----D~~-r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
+++.|+++++.+....+++.+.++ ++++.+.+. |+. +.....+.+..+.|.+|+++++..+...++.|..+++
T Consensus 148 ~s~~~~~~~~~~~~~~d~v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~~~~e~~~~~~~~~~~~tFslkyl~~~l~ 227 (266)
T 3a1j_A 148 PARVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLS 227 (266)
T ss_dssp EHHHHHHHHTTSCTTCCEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCTTCEEEEEHHHHHHHHH
T ss_pred ChHHHHHHHHhCCCChhhEEEEeCCCCEEEEEEcccCccccccccceEEEEECHHHhhheecCCCCEEEEEHHHHHHHHH
Confidence 378999999999999999999999 999999983 222 4555788888899999999999999999999999888
Q ss_pred ccC-CCceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeee
Q 024527 81 CAG-NDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLM 119 (266)
Q Consensus 81 ~~~-~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li 119 (266)
-++ .+..+.+.++..+.|+.+.+++. +...+|.+.++
T Consensus 228 f~~~~~~~v~i~~~~~g~Pl~~~~~~~--~~~~~f~LATl 265 (266)
T 3a1j_A 228 FAESANLNLSIHFDAPGRPAIFTIKDS--LLDGHFVLATL 265 (266)
T ss_dssp HHHHTTCEEEEEECSTTSCEEEEEECS--SEEEEEEECCC
T ss_pred HHHhcCCcEEEEECCCCccEEEEEeCC--cEEEEEEEeec
Confidence 763 35679999987677999998543 43456666543
No 42
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=97.68 E-value=0.0013 Score=55.25 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=79.7
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCce
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDI 87 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~ 87 (266)
++..|+++++.++.+-+.+.+.++++++++.+.....-+-..+.-..+...+++ .+++.++.+++.|..++|.++..+.
T Consensus 136 ~s~~f~~~i~~~~~~s~~V~i~~~~~~l~~s~~gd~g~~~~~l~~~~~~~~~~~-~e~~~~~F~~~YL~~~~ka~~~s~~ 214 (245)
T 3fds_D 136 LTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEAS-GADVSSSYGMEYVANTTKMRRASDS 214 (245)
T ss_dssp EHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSCEEEEEECTTSSSCSEEE-ECCCEEEEEHHHHHHGGGGGGTCSE
T ss_pred EHHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEecCcEEEEEEcCCCCceEEEe-cceEEEEEEHHHHHHHhhhcccCCE
Confidence 378999999999999999999999999999996433334333333334455677 6789999999999999998887789
Q ss_pred EEEEEcCCCCeEEEEEeCCCCCeEEEE
Q 024527 88 ITLKADDGSDTVTFMFESPTQDKIADF 114 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~~~~~~~~~~~~ 114 (266)
+.|.++++ .++.+++.-.+.|..+.|
T Consensus 215 V~i~~~~~-~Pl~l~~~i~~~g~~~y~ 240 (245)
T 3fds_D 215 MELYFGSQ-IPLKLRFKLPQEGYGDFY 240 (245)
T ss_dssp EEEEECTT-SCEEEEEECSTTCEEEEE
T ss_pred EEEEecCC-ccEEEEEEeCCCeEEEEE
Confidence 99999755 578887654334544433
No 43
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=97.63 E-value=0.0011 Score=55.59 Aligned_cols=95 Identities=12% Similarity=0.193 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCce
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDI 87 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~ 87 (266)
+.+.|+++++-++.+.+++.+.++++++++.+-..... -..+.-..+.+.+|+|.+++.++.|++.|..+||.+.-.+.
T Consensus 135 ~~~~l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~d~g~-~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s~~ 213 (245)
T 1ud9_A 135 NASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGENKV-EVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKLSDY 213 (245)
T ss_dssp EHHHHHHHHHHHHHHCSEEEEEECSSEEEEEESSSSCC-CEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGGCSE
T ss_pred eHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEccCce-EEEEecCCCccEEEEeCCceeEEEEHHHHHHHhhhcccCCE
Confidence 36899999999999999999999999999997432222 23332234455678888889999999999999998864688
Q ss_pred EEEEEcCCCCeEEEEEe
Q 024527 88 ITLKADDGSDTVTFMFE 104 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~~ 104 (266)
+.|.+.++ .++.++..
T Consensus 214 V~l~~~~~-~p~~i~~~ 229 (245)
T 1ud9_A 214 VKVAFADQ-KPMQLEFN 229 (245)
T ss_dssp EEEEECTT-SCEEEEEE
T ss_pred EEEEEcCC-CCEEEEEE
Confidence 99999854 68888764
No 44
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=97.58 E-value=0.0031 Score=52.78 Aligned_cols=109 Identities=16% Similarity=0.291 Sum_probs=80.9
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCce
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDI 87 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~ 87 (266)
+.+.|+++++-++.+-+++.+.++++++++.+-. -..-+....+.+...+|++++ +.++.|++.|..+||.+.-.+.
T Consensus 134 ~~~~l~~av~r~~~ls~~V~l~~~~~~l~ls~~~--d~g~~~~~~~~e~~~~~~g~~-~~i~Fn~~yL~d~lk~~~~s~~ 210 (245)
T 1rwz_A 134 DAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKG--DVDSIVFHMTETELIEFNGGE-ARSMFSVDYLKEFCKVAGSGDL 210 (245)
T ss_dssp EHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEC--SSCEEEEEECGGGSSEECCCC-EEEEEEHHHHHHHGGGCCTTCE
T ss_pred EHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEc--cCcEEEEecCCCccEEEEEee-EEEEEeHHHHHHHhhhccCCCe
Confidence 3689999999999999999999999999999744 223355555555556788776 9999999999999999875788
Q ss_pred EEEEEcCCCCeEEEEEeCCCC-CeEEEEEEeeee
Q 024527 88 ITLKADDGSDTVTFMFESPTQ-DKIADFEMKLMD 120 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~~~~~~-~~~~~~~l~li~ 120 (266)
+.|.+.++ .++.++..-... +..+.+..|.++
T Consensus 211 V~l~~~~~-~p~~i~~~~~~~~~~~~y~i~P~~~ 243 (245)
T 1rwz_A 211 LTIHLGTN-YPVRLVFELVGGRAKVEYILAPRIE 243 (245)
T ss_dssp EEEEECSS-SCEEEEEEETTTTEEEEEEECCBCC
T ss_pred EEEEECCC-CCEEEEEEECCCcEEEEEEEccccC
Confidence 99999854 688887642122 333344445443
No 45
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=97.56 E-value=0.0014 Score=54.78 Aligned_cols=95 Identities=9% Similarity=0.208 Sum_probs=75.5
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCce
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDI 87 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~ 87 (266)
+.+.|+++++-++.+.+++.+.++++++++.+-..... -..+.-..+.+.+|++.+++.++.|++.|..+||.+.-.+.
T Consensus 135 ~~~~l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~d~g~-~~~l~~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s~~ 213 (244)
T 2ijx_A 135 SSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEV-EVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDY 213 (244)
T ss_dssp EHHHHHHHHHHHTTTCSEEEEEEETTEEEEEETTCTTS-EEEEETTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGGCSE
T ss_pred EHHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCce-EEEEeCCCCccEEEEcCCceEEEEEHHHHHHHhhhccCCCE
Confidence 36899999999999999999999999999997433233 33333334456779888889999999999999999864688
Q ss_pred EEEEEcCCCCeEEEEEe
Q 024527 88 ITLKADDGSDTVTFMFE 104 (266)
Q Consensus 88 l~l~~~~~~~~l~i~~~ 104 (266)
+.|.+.+ ..++.++..
T Consensus 214 V~l~~~~-~~p~~i~~~ 229 (244)
T 2ijx_A 214 VKISFGN-QKPLQLFFN 229 (244)
T ss_dssp EEEEEET-TEEEEEEEE
T ss_pred EEEEEcC-CCCEEEEEE
Confidence 9999975 468888764
No 46
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=97.55 E-value=0.00045 Score=58.78 Aligned_cols=101 Identities=10% Similarity=0.155 Sum_probs=82.8
Q ss_pred eEEEcChhhHHHHHHHHHhhhceeeEEEeCC--ceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 3 ELRLVQGSLLKKVLEAIKELVNDANFDCSAT--GFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 3 ~a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~--gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
+++++ +..|+++++.+..+-+.+.+.++++ ++++.+......+-+.+.-.++.+..|+|.++++..-.++.|..+.|
T Consensus 143 ~v~m~-s~~l~~~~~dl~~~~d~v~i~~~~~~p~~~~~~~Gd~g~~~i~~~~~~~~~~~~~~~~~~~~~y~l~yL~~~~k 221 (263)
T 3a1j_C 143 KIILQ-SEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTK 221 (263)
T ss_dssp EEEEE-GGGGHHHHHTSCTTSSEEEEEECSSSSSEEEEEEETTEEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHH
T ss_pred EEEEe-hHHHHHHHHHHhccCCeEEEEEEcCCCEEEEEEEcCCccEEEEEcCCCCeEEEEEeCChhhcEEeHHHHHHHHh
Confidence 34444 8899999999999999999999999 99999986666665555555678999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCeEEEEEeC
Q 024527 81 CAGNDDIITLKADDGSDTVTFMFES 105 (266)
Q Consensus 81 ~~~~~d~l~l~~~~~~~~l~i~~~~ 105 (266)
.++-.+.++|.++.++ +|.+++.-
T Consensus 222 a~~~s~~v~i~~~~~~-pL~l~~~i 245 (263)
T 3a1j_C 222 ALVLSCKVSIRTDNRG-FLSLQYMI 245 (263)
T ss_dssp HHHHCSEEEEEEETTC-CEEEEEEE
T ss_pred hhhhcCEEEEEECCCe-eEEEEEEE
Confidence 8777789999997654 66665543
No 47
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=97.47 E-value=0.0022 Score=53.91 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHhhhceeeEEEe--CCceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhcccCCCc
Q 024527 9 GSLLKKVLEAIKELVNDANFDCS--ATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDD 86 (266)
Q Consensus 9 ~~~~k~i~~~l~~l~~~~~~~~~--~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d 86 (266)
++.|+++++.++.+-+.+.+.++ ++++++.+-. -+.-+...++++...+++ .+++++..+++.|..++|.++..+
T Consensus 135 s~~f~~~i~~~~~~sd~V~i~~~~~~~~~~~s~~g--d~g~~~~~l~~~~~~~~~-~e~~~~~F~~~YL~~~~Ka~~~s~ 211 (247)
T 3ifv_A 135 GTHLDRGIKAADMVSDHIRLRVDGAEETFHIEAEG--DTDDVDLSLPPADLISIE-AGAADSLFSLDYLKDMNKAIPTDA 211 (247)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTTEEEEEEEC--SSCEEEEEECGGGCSEEE-ECCCEEEEEHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCEEEEEEEe--cceEEEEEECCCceEEEe-cCeEEEEEeHHHHHHhhhhccCCC
Confidence 78999999999999999999999 8899999853 345567778866566777 667999999999999999988778
Q ss_pred eEEEEEcCCCCeEEEEEeCC-CCCeEEEEEEeeee
Q 024527 87 IITLKADDGSDTVTFMFESP-TQDKIADFEMKLMD 120 (266)
Q Consensus 87 ~l~l~~~~~~~~l~i~~~~~-~~~~~~~~~l~li~ 120 (266)
.+.|.+..+ .++.+++.-. +.|..+.|--|-++
T Consensus 212 ~V~i~~~~~-~Pl~l~~~i~~~~g~~~~~lAPri~ 245 (247)
T 3ifv_A 212 EVTVELGEE-FPVKLHYQIAEGMGTITYMLAPRIQ 245 (247)
T ss_dssp EEEEEECBS-SCEEEEEEEGGGTEEEEEEECCC--
T ss_pred EEEEEecCC-ccEEEEEEEcCCcEEEEEEEeeccc
Confidence 999999754 4777765532 23555555544443
No 48
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=97.45 E-value=0.0023 Score=53.64 Aligned_cols=94 Identities=9% Similarity=0.163 Sum_probs=74.9
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEeCCceEEEEECCCCeEEEEEEec-CCCcceeeeCCcEEEEEEhhhHHHHhcccCCCc
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLR-SEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDD 86 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~-~~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d 86 (266)
+.+.|+++++-++.+-+++.+.++++++++.+... ..-+...++ .+.+.+|+|.+++.++.|++.|..+||.+.-.+
T Consensus 139 ~~~~l~~av~r~~~~s~~V~i~~~~~~l~ls~~~d--~g~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~d~lk~~~~s~ 216 (248)
T 3aiz_A 139 DGDVLKDIARDLSLVGEEVEISADENTVTLSTEEA--GRTYKSLLKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSISQ 216 (248)
T ss_dssp CHHHHHHHHHHHTTSCSEEEEEECSSEEEEEEEET--TEEEEEEEEETBEESEEEESSCEEEEEEHHHHHHHHHHGGGCS
T ss_pred eHHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEcc--CceEEEEEcCCCcceEEecCCceEEEEEHHHHHHHhhhccCCC
Confidence 36899999999999999999999999999998643 333444443 122457888888999999999999999886467
Q ss_pred eEEEEEcCCCCeEEEEEe
Q 024527 87 IITLKADDGSDTVTFMFE 104 (266)
Q Consensus 87 ~l~l~~~~~~~~l~i~~~ 104 (266)
.+.+.+.++ .++.++..
T Consensus 217 ~V~l~~~~~-~p~~i~~~ 233 (248)
T 3aiz_A 217 NVTVGFGNN-IPMKIEVP 233 (248)
T ss_dssp SEEEEEETT-EEEEEEEE
T ss_pred eEEEEEcCC-CCEEEEEE
Confidence 899999754 68888874
No 49
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=97.40 E-value=0.00063 Score=58.89 Aligned_cols=112 Identities=11% Similarity=0.212 Sum_probs=94.6
Q ss_pred ChhhHHHHHHHHHhhhceeeEEEe-CCceEEEEEC-----CC-CeEEEEEEecCCCcceeeeCCcEEEEEEhhhHHHHhc
Q 024527 8 QGSLLKKVLEAIKELVNDANFDCS-ATGFSLQAMD-----SS-HVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLK 80 (266)
Q Consensus 8 ~~~~~k~i~~~l~~l~~~~~~~~~-~~gl~~~a~D-----~~-r~a~v~~~l~~~~F~~y~~~~~~~~gi~l~~L~~ilk 80 (266)
+++.|+.+++......+++.+.++ ++.+.+++-. .. +-+...+.+..+.|++|.++++..+...++.|..++.
T Consensus 148 ~~~~l~e~l~~f~~~~eevtl~~~~~~~v~~~s~~e~~~d~~~~~~~Tel~i~~~ef~~~~v~~~~~itf~lKefrail~ 227 (296)
T 3g65_A 148 PARVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLS 227 (296)
T ss_dssp EHHHHHHHSTTSCTTCCEEEEEEETTTEEEEEECCC-----CCCCCEEEEEECGGGCSEEECCTTCEEEEEHHHHHHHHH
T ss_pred chHHHHHHHHhCcCCcceEEEEECCCCeEEEEEeccccccccCceEEEEEEEChhHheeEecCCCcEEEEEHHHHHHHHH
Confidence 378999999998888999999999 7889999852 23 7788999999999999999999999999999999999
Q ss_pred ccCC-CceEEEEEcCCCCeEEEEEeCCCCCeEEEEEEeeeec
Q 024527 81 CAGN-DDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDI 121 (266)
Q Consensus 81 ~~~~-~d~l~l~~~~~~~~l~i~~~~~~~~~~~~~~l~li~~ 121 (266)
-+.. +..+.+.++..+.|+.+.+++. +....|.+.++..
T Consensus 228 ~ae~~~~~i~i~f~~pG~Pl~~~~~~~--~~~~~fvLaT~~~ 267 (296)
T 3g65_A 228 FAESANLNLSIHFDAPGRPAIFTIKDS--LLDGHFVLATLSD 267 (296)
T ss_dssp HHHHTTCEEEEECCSTTSCEEEEEECS--SCEEEEEECCCCS
T ss_pred HHHhcCCeEEEEECCCCCcEEEEEeCC--cEEEEEEEEECCC
Confidence 8753 4589999998888999999864 5666777777653
No 50
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Probab=95.29 E-value=0.33 Score=41.32 Aligned_cols=159 Identities=13% Similarity=0.178 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHhh---hceeeEEEeCCceEEEEECCCCeEEEEEEecCCCcceeeeCCcE-EE--EEE-hhhHHHHhcc
Q 024527 9 GSLLKKVLEAIKEL---VNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNI-SM--GMN-LNNVSKMLKC 81 (266)
Q Consensus 9 ~~~~k~i~~~l~~l---~~~~~~~~~~~gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~-~~--gi~-l~~L~~ilk~ 81 (266)
...|..++.++++| +.+..+-|.++||-+++. =.-=++-+-|+.+.|++|+-.++- .| -++ -..|..++|.
T Consensus 37 g~~L~~~~~alaPl~~sLkds~LvFse~GllIh~s--v~gEQVyvPi~~~~FS~Y~W~GP~AvFLAlvD~RrsLLDaFr~ 114 (319)
T 1dml_A 37 GAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNT--IFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRA 114 (319)
T ss_dssp HHHHHHHHHHHGGGTTTTSSCEEEEETTEEEEEEE--ETTEEEEEEEEGGGSSEEECCSSCEEEESEEETTEETTSTTST
T ss_pred chhHHHHHHHHHhHHHhhcccEEEEcCCceEEEee--ecceEEEEEcChHhccccEecCCceEEeEecccchhHHHHhcc
Confidence 66889999999998 778999999999999973 233467888999999999988752 22 344 3478888987
Q ss_pred cCCCc--eEEEEEcCCCC--eEEEEEeC--CCCCeEEEEEEeeeecCCCCC--CCCcceeeEEEEEehHHHHHHHHHhhc
Q 024527 82 AGNDD--IITLKADDGSD--TVTFMFES--PTQDKIADFEMKLMDIDSEHL--GIPEAEYHAIVRMPSAEFARICKDLAS 153 (266)
Q Consensus 82 ~~~~d--~l~l~~~~~~~--~l~i~~~~--~~~~~~~~~~l~li~~~~~~~--~ip~~~~~~~i~~~s~~~~~~i~~~~~ 153 (266)
-+..+ .+.+++.+..+ .|.=++-. .+.+-...+...++.-+.-.| -.|...-+..+.+....|.+++.-...
T Consensus 115 ~k~~~~~rV~F~i~G~~P~R~LtQ~v~~~~~d~~~~~~~~~tlvK~El~~ysvmlPq~~PDvtl~LsK~QL~Kil~~~~k 194 (319)
T 1dml_A 115 NQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGA 194 (319)
T ss_dssp TTCTTEEEEEEEEESCTTSCEEEEEEEETTSSTTCSSSSCCEEEEECCSSCEEEECCSCCSEEEEECHHHHHHHHHHSCC
T ss_pred CCCCCcEEEEEEEecCCCcceEEEEEEEecCCCCccchhhHHHHHHhhhceEEEccCCCCCEEEEEcHHHHHHHHHHHhc
Confidence 54433 46666654332 22222211 111111112333333333333 457777889999999999999983332
Q ss_pred -cCCEEEEEEeC-CeEEE
Q 024527 154 -IGDTVVISVTK-EGVKF 169 (266)
Q Consensus 154 -~~d~v~i~~~~-~~l~~ 169 (266)
-++.++|.... +.+..
T Consensus 195 ~~~~~ttF~L~~~~~f~v 212 (319)
T 1dml_A 195 DSATPTTFELGVNGKFSV 212 (319)
T ss_dssp STTSCEEEEECTTSEEEE
T ss_pred CCCCceEEEEecCCcEEE
Confidence 23577777663 34433
No 51
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=94.51 E-value=0.61 Score=39.64 Aligned_cols=110 Identities=14% Similarity=0.177 Sum_probs=73.2
Q ss_pred EEEcChhhHHHHHHHHHhhhceeeEEEeCCc-eEEEEECCCCeEEEEEEecCCC-c--------ceeeeCCcEEEEEEhh
Q 024527 4 LRLVQGSLLKKVLEAIKELVNDANFDCSATG-FSLQAMDSSHVALVALLLRSEG-F--------EHYRCDRNISMGMNLN 73 (266)
Q Consensus 4 a~~~~~~~~k~i~~~l~~l~~~~~~~~~~~g-l~~~a~D~~r~a~v~~~l~~~~-F--------~~y~~~~~~~~gi~l~ 73 (266)
+.++..+.|+++++-++.+-+.+.+.++.+| +++.+-.. .+-+...+..-. - ..-..+++.++.++++
T Consensus 159 i~lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~sv~~~~k 236 (281)
T 3a1j_B 159 IYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETE--LVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIR 236 (281)
T ss_dssp EECCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECS--SEEEEEEECCCCCCCC----------CCCCEEEEEEHH
T ss_pred EECCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEee--eEEEEEEEcCCCCCCCCccccccccCCCccEEEEEEHH
Confidence 4566668999999999999999999999999 99997432 334444444210 0 1122345689999999
Q ss_pred hHHHHhcccCCCceEEEE-EcCCCCeEEEEEeCCCCCeEEEEEEee
Q 024527 74 NVSKMLKCAGNDDIITLK-ADDGSDTVTFMFESPTQDKIADFEMKL 118 (266)
Q Consensus 74 ~L~~ilk~~~~~d~l~l~-~~~~~~~l~i~~~~~~~~~~~~~~l~l 118 (266)
.|.+.++...-...+.+. +.++. +|++.. -...| ...|+++.
T Consensus 237 ~l~~f~k~~~ls~~v~~~~i~~~~-~l~~y~-~~~~g-~l~yylp~ 279 (281)
T 3a1j_B 237 KLLQFLAGQQVNPTKALCNIVNNK-MVHFDL-LHEDV-SLQYFIPA 279 (281)
T ss_dssp HHHHHHHHCCSCCSEEEEEEETTT-EEEEEE-ESSSC-EEEEEEEC
T ss_pred HHHHhhCcccCCCcEEEEEEeCCc-eEEEEE-eCCcE-EEEEEeee
Confidence 999999976645556565 65543 677632 22223 33577664
No 52
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=86.40 E-value=10 Score=30.35 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=57.3
Q ss_pred CceEEEEECCCCeEEEEEEecC-----CCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCCeEEEEEeCCC
Q 024527 33 TGFSLQAMDSSHVALVALLLRS-----EGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPT 107 (266)
Q Consensus 33 ~gl~~~a~D~~r~a~v~~~l~~-----~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~ 107 (266)
+|++|.|-.....+-+.+.-.. +.--..++.++++....++.|..+.|.+.-.+.++|.+..+. +|.+.+.-.
T Consensus 107 d~v~Fs~~GD~G~~~i~l~~~~~~dk~e~~v~ie~~e~v~~~fsl~YL~~f~Ka~~ls~~V~l~l~~~~-Pl~l~y~i~- 184 (200)
T 3pge_A 107 ETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEA-PALFQFDLK- 184 (200)
T ss_dssp CCEEEEEECSSCEEEEEECCBCCSSSCTTCBEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSS-CEEEEEEET-
T ss_pred ceEEEEeeccCCeEEEEEecCCCCCCcccceEEEeCCcceeeEhHHHHHHHhccccCCCeEEEEEcCCC-CEEEEEEEC-
Confidence 7899998665665555543221 234567788899999999999999998887889999997654 677766533
Q ss_pred CCeEEEEE
Q 024527 108 QDKIADFE 115 (266)
Q Consensus 108 ~~~~~~~~ 115 (266)
.|..+.|-
T Consensus 185 ~G~l~f~L 192 (200)
T 3pge_A 185 SGFLQFFL 192 (200)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 35554443
No 53
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A* 3u5z_G* 3u60_G* 3u61_G*
Probab=85.68 E-value=13 Score=30.27 Aligned_cols=120 Identities=11% Similarity=0.166 Sum_probs=81.0
Q ss_pred ceEEEEECCCCeEEEEEEecCCCcceeeeCCcEEEE-EEhhhHHHHhcccCCCceEEEEEcCCCCeEEEEEeCCCCCeEE
Q 024527 34 GFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMG-MNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIA 112 (266)
Q Consensus 34 gl~~~a~D~~r~a~v~~~l~~~~F~~y~~~~~~~~g-i~l~~L~~ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~ 112 (266)
|=.+...+..+..++.+.++.++ +.+ ++ -+|..+..+|+.++.+-. +..++++ .+.| .+.+ +
T Consensus 26 G~~i~T~s~~~~i~AeA~I~d~f------d~e--~~IYDL~~FL~iL~L~~~~ae--i~~~~~~-~I~I--~~~r----s 88 (228)
T 1b77_A 26 GKFIMTRAVNGTTYAEANISDEI------DFD--VALYDLNSFLSILSLVSDDAE--ISMHTDG-NIKI--ADTR----S 88 (228)
T ss_dssp EEEEEEECTTSSEEEEEEEEEEE------CSC--EEESCHHHHHHHHTTSCTTCE--EEECTTS-SEEE--ECSS----E
T ss_pred CCEEEEEeCCCcEEEEEEecccC------cce--eeeeeHHHHHHHHhccCCCCe--EEecCCc-eEEE--eCCC----e
Confidence 44555677889999999998443 222 33 478999999998874444 4454333 4444 3331 2
Q ss_pred EEEEeeeecCCC-----CCCCCcceeeEEEEEehHHHHHHHHHhhccC-CEEEEEEeCCeEEEEEE
Q 024527 113 DFEMKLMDIDSE-----HLGIPEAEYHAIVRMPSAEFARICKDLASIG-DTVVISVTKEGVKFSTR 172 (266)
Q Consensus 113 ~~~l~li~~~~~-----~~~ip~~~~~~~i~~~s~~~~~~i~~~~~~~-d~v~i~~~~~~l~~s~~ 172 (266)
....+--|++.. .+.+|. -++++.+.+.+|+++.|..+.++ +.+.|...++++.+.+.
T Consensus 89 ~~~~~~adp~~I~~P~k~i~~P~--~dv~F~L~~edl~ql~kas~~l~l~dl~~~~~~g~i~i~~~ 152 (228)
T 1b77_A 89 TVYWPAADKSTIVFPNKPIQFPV--ASVITEIKAEDLQQLLRVSRGLQIDTIAITNKDGKIVINGY 152 (228)
T ss_dssp EEEECCBCGGGSCCCSSCCCCCC--CSEEEEECHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEE
T ss_pred EEEEEccCcccccCCccccCCCC--CCEEEEECHHHHHHHHHHHHhcCCCeEEEEecCCEEEEEEe
Confidence 444444444331 344553 35889999999999999999998 78999999999998864
No 54
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=68.61 E-value=38 Score=26.02 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=54.6
Q ss_pred CceEEEEECCCCeEEEEEEecC-----CCcceeeeCCcEEEEEEhhhHHHHhcccCCCceEEEEEcCCCCeEEEEEeCCC
Q 024527 33 TGFSLQAMDSSHVALVALLLRS-----EGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPT 107 (266)
Q Consensus 33 ~gl~~~a~D~~r~a~v~~~l~~-----~~F~~y~~~~~~~~gi~l~~L~~ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~ 107 (266)
+|+++.+-.....+-+.+.-.. +.--+.+++++++....++.|..+.|...-.+.++|.+..+- ++.+.++-.
T Consensus 79 ~~vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~~~~~~~~fsl~yl~~~~ka~~~s~~v~l~~~~~~-Pl~~~~~~~- 156 (169)
T 3l0w_B 79 ETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEA-PALFQFDLK- 156 (169)
T ss_dssp CCEEEEEECSSCEEEEEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSS-CEEEEEEET-
T ss_pred ccccccccCcccceeEEEecCCCCCCcccceEEecCCcceEEEhHHHHHHHhccccCCCeEEEEEcCCC-CEEEEEEEC-
Confidence 7788887665555555443322 123567778889999999999999998877889999997554 666665532
Q ss_pred CCeEE
Q 024527 108 QDKIA 112 (266)
Q Consensus 108 ~~~~~ 112 (266)
.|..+
T Consensus 157 ~g~~~ 161 (169)
T 3l0w_B 157 SGFLQ 161 (169)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 34443
No 55
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=68.57 E-value=3.6 Score=30.11 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=21.0
Q ss_pred EehHHHHHHHHH-------hhccCCEEEEEEeCCeEEEEE
Q 024527 139 MPSAEFARICKD-------LASIGDTVVISVTKEGVKFST 171 (266)
Q Consensus 139 ~~s~~~~~~i~~-------~~~~~d~v~i~~~~~~l~~s~ 171 (266)
|+...|.+.+++ ...+|+.|+|+.+++.+++.+
T Consensus 28 ~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s 67 (121)
T 3izc_W 28 FDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVS 67 (121)
T ss_dssp CCSHHHHHHHHHHHHHHSSSSSCCCCEEEEECSSEEEEEE
T ss_pred ecHHHHHHHHHHHheecCcccccCceEEEEEcCCEEEEEe
Confidence 445556555554 556777888877777776543
No 56
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=54.22 E-value=33 Score=24.84 Aligned_cols=69 Identities=22% Similarity=0.455 Sum_probs=40.8
Q ss_pred EehHHHHHHHHH-------hhccCCEEEEEEeCCeEEEEEEecceeEEEEEeecccCCCCCCceEEEecCcEEEEEehHH
Q 024527 139 MPSAEFARICKD-------LASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRY 211 (266)
Q Consensus 139 ~~s~~~~~~i~~-------~~~~~d~v~i~~~~~~l~~s~~gd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y 211 (266)
|+...|.+.+++ ...+|+.|.|+.+++.+++.++ +.|+-+|
T Consensus 30 ~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~--------------------------------~~fSKRY 77 (118)
T 4a18_M 30 ILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQST--------------------------------IPFSKRY 77 (118)
T ss_dssp CCHHHHHHHHHHHCCBTTBSSCCTTTEEEEECSSEEEEEES--------------------------------SCCCHHH
T ss_pred ecHHHHHHHHHHHhhccCcccccCCeEEEEEcCCEEEEEec--------------------------------cccchHH
Confidence 456667777665 4455667777766666655432 1277788
Q ss_pred H----HhccccCCCCceEEEEecCCCcEEEEE
Q 024527 212 M----NSFTRATPLSNTVTISLSSELPVVVEY 239 (266)
Q Consensus 212 L----~~~~k~~~ls~~v~l~~~~~~Pl~l~~ 239 (266)
| +.+||-.+|.+=+++--++..--.|+|
T Consensus 78 LKYLTKKyLKK~~LRDwlRVVA~~K~~YeLrY 109 (118)
T 4a18_M 78 LKYLTKKYLKKQDLRNYLYVTSSDKNSYQLRY 109 (118)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEEEETTEEEEEE
T ss_pred HHHHHHHHhhhccccceEEEEecCCCeEEEEE
Confidence 8 577777777776555444333333343
No 57
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=36.38 E-value=80 Score=20.14 Aligned_cols=32 Identities=9% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhccCCEEEEEEeCCeEEEEEEe
Q 024527 142 AEFARICKDLASIGDTVVISVTKEGVKFSTRG 173 (266)
Q Consensus 142 ~~~~~~i~~~~~~~d~v~i~~~~~~l~~s~~g 173 (266)
+.++++++.+..++.+|+.+.++|.+.+...|
T Consensus 17 kalkemirqarkfagtvtytldgndleiritg 48 (85)
T 2kl8_A 17 KALKEMIRQARKFAGTVTYTLDGNDLEIRITG 48 (85)
T ss_dssp HHHHHHHHHHTTTTCEEEEEECSSCEEEEEES
T ss_pred HHHHHHHHHHHhhcceEEEEecCCeeEEEEec
Confidence 45777788888899999999999887776655
No 58
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=26.34 E-value=62 Score=22.77 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=24.7
Q ss_pred HHHHhhhce--eeEEEeCCceEEEEECCCCeEE
Q 024527 17 EAIKELVND--ANFDCSATGFSLQAMDSSHVAL 47 (266)
Q Consensus 17 ~~l~~l~~~--~~~~~~~~gl~~~a~D~~r~a~ 47 (266)
+|+.+++.+ +-.+.+++||.+.--|++++++
T Consensus 45 ~Cl~~~l~~~p~~W~ptPDGi~L~~~dGs~l~f 77 (101)
T 1smp_I 45 ACLQKLLPEAPVGWRPTPDGLTLTQADGSAVAF 77 (101)
T ss_dssp HHHHHHSSSCCCEEEECSSEEEEECTTSCEEEE
T ss_pred HHHHHHhcCCCcccccCCCEEEEEcCCCCEEEE
Confidence 566666555 5678999999999889888885
No 59
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=20.83 E-value=2e+02 Score=20.77 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhccCCEEEEEEeCCeEEEEEEe
Q 024527 142 AEFARICKDLASIGDTVVISVTKEGVKFSTRG 173 (266)
Q Consensus 142 ~~~~~~i~~~~~~~d~v~i~~~~~~l~~s~~g 173 (266)
+.|+++++.+..++.+|+-+.++|.+.+...|
T Consensus 18 kalkemirqarkfagtvtytl~gn~l~i~itg 49 (170)
T 4hhu_A 18 KALKEMIRQARKFAGTVTYTLSGNRLVIVITG 49 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHhhcceEEEEEeCCEEEEEEeC
Confidence 56788888889999999999999988877665
No 60
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Probab=20.51 E-value=1.9e+02 Score=24.49 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=82.4
Q ss_pred EcChhhHHHHHHHHHhh-hceeeEEEeCCc--------eEEEEECCCCeEEEEEEecCCCcceeeeC-----CcEEEEEE
Q 024527 6 LVQGSLLKKVLEAIKEL-VNDANFDCSATG--------FSLQAMDSSHVALVALLLRSEGFEHYRCD-----RNISMGMN 71 (266)
Q Consensus 6 ~~~~~~~k~i~~~l~~l-~~~~~~~~~~~g--------l~~~a~D~~r~a~v~~~l~~~~F~~y~~~-----~~~~~gi~ 71 (266)
+.+-+.+-.+|++=+.- +..|.|+|+++- +.....|+.-.......+-+-.|.+|.+- ..+++.++
T Consensus 102 vD~RrsLLDaFr~~k~~~~~rV~F~i~G~~P~R~LtQ~v~~~~~d~~~~~~~~~tlvK~El~~ysvmlPq~~PDvtl~Ls 181 (319)
T 1dml_A 102 VDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLT 181 (319)
T ss_dssp EETTEETTSTTSTTTCTTEEEEEEEEESCTTSCEEEEEEEETTSSTTCSSSSCCEEEEECCSSCEEEECCSCCSEEEEEC
T ss_pred cccchhHHHHhccCCCCCcEEEEEEEecCCCcceEEEEEEEecCCCCccchhhHHHHHHhhhceEEEccCCCCCEEEEEc
Confidence 33344444444443332 667888887632 11111222211111222223335556541 25999999
Q ss_pred hhhHHHHhcccCC--CceEEEEEcCC--------CCeEEEEEeCCCCCeEEEEEEeeeecCC----CCCCCCccee----
Q 024527 72 LNNVSKMLKCAGN--DDIITLKADDG--------SDTVTFMFESPTQDKIADFEMKLMDIDS----EHLGIPEAEY---- 133 (266)
Q Consensus 72 l~~L~~ilk~~~~--~d~l~l~~~~~--------~~~l~i~~~~~~~~~~~~~~l~li~~~~----~~~~ip~~~~---- 133 (266)
-..|.|++....+ .+.+.+++..+ +.++.|.....+.+....-.++++..-- ..-..++.-|
T Consensus 182 K~QL~Kil~~~~k~~~~~ttF~L~~~~~f~v~sg~~~vtfsa~~~g~~~~t~~~~~il~~A~~k~~~a~~~~~tv~G~~~ 261 (319)
T 1dml_A 182 RPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYGENT 261 (319)
T ss_dssp HHHHHHHHHHSCCSTTSCEEEEECTTSEEEEECSSCEEEEECCBCC------------------------CTTBCEEEST
T ss_pred HHHHHHHHHHHhcCCCCceEEEEecCCcEEEecCCeEEEEEEeccCCCCChhhHHHHHHHhhhhhhhhcccceEEeccCC
Confidence 9999999995554 45677777533 2233332222211111122222331110 0001121111
Q ss_pred --eEEEEEehHHHHHHHHHhhccCCEEEEEEeC--CeEEEEEEec
Q 024527 134 --HAIVRMPSAEFARICKDLASIGDTVVISVTK--EGVKFSTRGD 174 (266)
Q Consensus 134 --~~~i~~~s~~~~~~i~~~~~~~d~v~i~~~~--~~l~~s~~gd 174 (266)
+..+.+..-.|+.+++++..-|..+.|-.+. ..+.+++.+-
T Consensus 262 ~r~F~laLed~~fr~vlqklk~gg~~L~Fflt~~~Pml~Vt~~~p 306 (319)
T 1dml_A 262 HRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGP 306 (319)
T ss_dssp TSCEEEEESSCCHHHHHHHTTCCSEEEEEECSSSSCEEEEEESSS
T ss_pred CcceEEEeccccHHHHHHHHhccCeEEEEEecCCCCeEEEEcCCC
Confidence 4456666655999999999887788886664 4788887764
Done!