BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024528
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PW6|A Chain A, Crystal Structure Of Uncharacterized Protein Jw3007 From
Escherichia Coli K12
Length = 271
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 132/235 (56%), Gaps = 14/235 (5%)
Query: 2 STVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFT-QRPNSILVISGHWETDVPTVNV 60
ST F+ HGSP ++++L + ++W++ T RP +I+V+S HW T V
Sbjct: 12 STRXPALFLGHGSPXNVLEDNL----YTRSWQKLGXTLPRPQAIVVVSAHWFTRGTGVTA 67
Query: 61 VQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWV 120
+ I+DF FP+ +Y YPAPG+P LA+R+ +LL E G DHG+W
Sbjct: 68 XETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKE--AWGFDHGSWG 125
Query: 121 PLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFD 180
L+ YP+A+IP QLS+ + K H+ G+ LA L+DEG+ ++ SG+ HNLR +++
Sbjct: 126 VLIKXYPDADIPXVQLSIDSSKPAAWHFEXGRKLAALRDEGIXLVASGNVVHNLRTVKWH 185
Query: 181 GDSVA-SWASEFDNWLKDALL-QGRYED---VNHYEQKAPCAKKAHPWPDHFYPL 230
GDS WA+ F+ ++K L QG E VN+ + + ++P P+H+ PL
Sbjct: 186 GDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPL 238
>pdb|3ISP|A Chain A, Crystal Structure Of Argp From Mycobacterium Tuberculosis
pdb|3ISP|B Chain B, Crystal Structure Of Argp From Mycobacterium Tuberculosis
Length = 303
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 129 ANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLR-ALQFDGDSVASW 187
A IP+ +L+ QT A L+ E + +G ++ R + + DS+A+W
Sbjct: 64 AGIPLLRLAAQT--------------ALLESEALAEMGGNASLKRTRITIAVNADSMATW 109
Query: 188 ASEFDNWLKDALLQGRYEDVNH 209
S + L D LL R ED +H
Sbjct: 110 FSAVFDGLGDVLLDVRIEDQDH 131
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 24/139 (17%)
Query: 20 DESLPARHFLKAWKEQVF--TQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQM 77
DE R + KE+VF T++ L + VP +N ++ +F E
Sbjct: 99 DERFDMRRI--SPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDE-- 154
Query: 78 YKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLS 137
PAP EL + +K+L E FN V E+ KR +Y EA + LS
Sbjct: 155 ----LPAPTLVELGRELKELDVEGIFNDVVENVKR------------LYQEAELVHADLS 198
Query: 138 VQTRK--DGTHHYNMGKAL 154
D + +MG+A+
Sbjct: 199 EYNIMYIDKVYFIDMGQAV 217
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 83 PAPGAPELAKRVKQLLTESGFNHVNEDTKR 112
PAP EL + +K+L E FN V E+ KR
Sbjct: 156 PAPTLVELGRELKELDVEGIFNDVVENVKR 185
>pdb|3EOL|A Chain A, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
pdb|3EOL|B Chain B, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
Length = 433
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 73 FPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANI 131
+P+Q YPA PELAKR+ + L + + + +GL W ++ EA
Sbjct: 103 YPDQSL---YPANAGPELAKRINRTLQRA--DQIETAEGKGLSVDTWFAPIVADAEAGF 156
>pdb|3E5B|A Chain A, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|B Chain B, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|C Chain C, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|D Chain D, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3OQ8|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3P0X|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
Length = 433
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 73 FPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANI 131
+P+Q YPA PELAKR+ + L + + + +GL W ++ EA
Sbjct: 103 YPDQSL---YPANAGPELAKRINRTLQRA--DQIETAEGKGLSVDTWFAPIVADAEAGF 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,756,808
Number of Sequences: 62578
Number of extensions: 369111
Number of successful extensions: 886
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 11
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)