BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024528
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q949R4|DIOXL_ARATH 4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana
GN=At4g15093 PE=2 SV=1
Length = 269
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/259 (69%), Positives = 209/259 (80%), Gaps = 5/259 (1%)
Query: 1 MSTVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNV 60
M V TFF+SHGSPTLSID+SL AR F K+W ++V Q+P SILVIS HW+T P+VN
Sbjct: 1 MEKVNQTFFLSHGSPTLSIDDSLEARQFFKSWTQKVLPQKPKSILVISAHWDTKFPSVNT 60
Query: 61 VQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLT-ESGFNHVNEDTKRGLDHGAW 119
V +N+ I+DF FP+ MYKLKY APGA EL KRVK+LL E G V+EDTKRGLDHGAW
Sbjct: 61 VLRNNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAW 120
Query: 120 VPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQF 179
VPLMLMYPEA+IP+CQLSVQ+ ++G++HYNMGKALA LKDEGVLIIGSGSATHNLR L F
Sbjct: 121 VPLMLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDF 180
Query: 180 ---DGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGA 236
DG V WA EFD+WL+D+LLQGRY DVN +E+KAP AK AHPWP+H YPLHV MGA
Sbjct: 181 NITDGSPVP-WALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGA 239
Query: 237 AGENANAELIHTSWQLGTI 255
AG +A AE IHTSWQLGT+
Sbjct: 240 AGGDAKAEQIHTSWQLGTL 258
>sp|Q7XA48|DODA_PORGR 4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA
PE=2 SV=1
Length = 271
Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/263 (58%), Positives = 191/263 (72%), Gaps = 1/263 (0%)
Query: 3 TVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ 62
+ K +FF+SHG+P + DES AR+FL WK+ VF +P SILV+S HWETDVP V+ Q
Sbjct: 8 SFKESFFLSHGNPAMLADESFIARNFLLGWKKNVFPVKPKSILVVSAHWETDVPCVSAGQ 67
Query: 63 QNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPL 122
+VIYDF P M+++KYPAPG P+LAKRV++LL GF D +RG DH +WVPL
Sbjct: 68 YPNVIYDFTEVPASMFQMKYPAPGCPKLAKRVQELLIAGGFKSAKLDEERGFDHSSWVPL 127
Query: 123 MLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGD 182
+M PEA+IPVCQLSVQ D THH+N+G+ALAPLK EGVL IGSG A H D
Sbjct: 128 SMMCPEADIPVCQLSVQPGLDATHHFNVGRALAPLKGEGVLFIGSGGAVHPSDDTPHWFD 187
Query: 183 SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCA-KKAHPWPDHFYPLHVAMGAAGENA 241
VA WA+EFD WL+DALL+GRYEDVN+Y+ KAP K AHP P+HF PLHVAMGA GE +
Sbjct: 188 GVAPWAAEFDQWLEDALLEGRYEDVNNYQTKAPEGWKLAHPIPEHFLPLHVAMGAGGEKS 247
Query: 242 NAELIHTSWQLGTISYSSYKFTA 264
AELI+ +W GT+ Y+SYKFT+
Sbjct: 248 KAELIYRTWDHGTLGYASYKFTS 270
>sp|P24197|YGID_ECOLI Uncharacterized protein YgiD OS=Escherichia coli (strain K12)
GN=ygiD PE=1 SV=3
Length = 262
Score = 157 bits (398), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 149/267 (55%), Gaps = 14/267 (5%)
Query: 2 STVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFT-QRPNSILVISGHWETDVPTVNV 60
ST F+ HGSP ++++L + ++W++ T RP +I+V+S HW T V
Sbjct: 3 STRMPALFLGHGSPMNVLEDNL----YTRSWQKLGMTLPRPQAIVVVSAHWFTRGTGVTA 58
Query: 61 VQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWV 120
++ I+DF FP+ +Y YPAPG+P LA+R+ +LL E G DHG+W
Sbjct: 59 METPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKE--AWGFDHGSWG 116
Query: 121 PLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFD 180
L+ MYP+A+IP+ QLS+ + K H+ MG+ LA L+DEG++++ SG+ HNLR +++
Sbjct: 117 VLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWH 176
Query: 181 GDSVA-SWASEFDNWLKDALL-QGRYED---VNHYEQKAPCAKKAHPWPDHFYPLHVAMG 235
GDS WA+ F+ ++K L QG E VN+ + + ++P P+H+ PL +G
Sbjct: 177 GDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEG--GTLSNPTPEHYLPLLYVLG 234
Query: 236 AAGENANAELIHTSWQLGTISYSSYKF 262
A + ++G++S S +
Sbjct: 235 AWDGQEPITIPVEGIEMGSLSMLSVQI 261
>sp|O74741|DIOXL_SCHPO 4,5-DOPA dioxygenase extradiol-like protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC1709.16c PE=3
SV=2
Length = 297
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 126/257 (49%), Gaps = 25/257 (9%)
Query: 7 TFFISHGSPTLSI-----DESLPARHFLKAWKEQVFTQ---------RPNSILVISGHWE 52
+++HGSP L + DE L Q Q RP I+V S H+E
Sbjct: 25 ALYLAHGSPFLMLPQSSDDEVFSNDSKLGGLHYQFLEQLGPFLLEKFRPKGIIVFSAHYE 84
Query: 53 T--DVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDT 110
+ V + +N + YD+Y FP+ +Y++K+ + G+ +A ++ L E
Sbjct: 85 SRGSVEVYSRDDENPLFYDYYGFPDYLYQIKFHSKGSKRIADQIISALKEYQIPAKTVSG 144
Query: 111 KRGLDHGAWVPLMLMYPEA-NIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGS 169
RGLDHG +VP +M+P+ NIP+ ++S+ T D Y +G+AL L+ E LI+ G
Sbjct: 145 DRGLDHGVFVPFKIMFPDGLNIPLIEVSMHTL-DPMQLYKVGQALQSLRKE-YLIVSGGL 202
Query: 170 ATHNLRALQ-FDGDSVASWASEFDNWLKDALLQGRYED-VNHY--EQKAPCAKKAHPWPD 225
H L F+ D+ A EF + A+ + D +N Q P +KAHP +
Sbjct: 203 NIHTFEDLSAFNEDTAADGYKEFQLDILKAIETDKQNDRLNKLLGLQLHPYFRKAHPREE 262
Query: 226 HFYPLHVA--MGAAGEN 240
HF PL+VA +G++G++
Sbjct: 263 HFVPLYVAAGLGSSGKS 279
>sp|Q05353|HPCB_ECOLX 3,4-dihydroxyphenylacetate 2,3-dioxygenase OS=Escherichia coli
GN=hpcB PE=1 SV=2
Length = 276
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 67/166 (40%), Gaps = 6/166 (3%)
Query: 42 NSILVISGHWETDVPT-VNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTE 100
++I+V HW + +N + +Y P + + Y G PEL + + +
Sbjct: 49 DTIIVFDTHWLVNSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLIADEALK 108
Query: 101 SGFNHVNEDT-KRGLDHGAWVPLMLMYPEANIPVCQLSV-QTRKDGTHHYNMGKALAPL- 157
G + L++G+ VP+ M + V +S T D +G+ +
Sbjct: 109 LGVRAKAHNIPSLKLEYGSVVPMRYMNEDKRFKVVSISAFCTVHDFADSRKLGERIVKAI 168
Query: 158 --KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQ 201
D V ++ SGS +H Q + + S+ EFD + + +++
Sbjct: 169 EQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVK 214
>sp|F6QZ15|MICA2_XENTR Protein-methionine sulfoxide oxidase mical2 OS=Xenopus tropicalis
GN=mical2 PE=3 SV=1
Length = 1126
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 142 KDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQ 201
KD TH++ M L D+GV+I A L A D D++ S+A E ++ + L
Sbjct: 294 KDSTHYFVMTAKKQSLLDKGVIINDYADAEMLLCAENVDQDNLQSYAREAADFATNYQLP 353
Query: 202 GRYEDVNHYEQ 212
+NHY Q
Sbjct: 354 SLDFAINHYGQ 364
>sp|P67666|Y2007_MYCBO Uncharacterized HTH-type transcriptional regulator Mb2007c
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=Mb2007c PE=4 SV=1
Length = 303
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 129 ANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLR-ALQFDGDSVASW 187
A IP+ +L+ QT A L+ E + +G ++ R + + DS+A+W
Sbjct: 64 AGIPLLRLAAQT--------------ALLESEALAEMGGNASLKRTRITIAVNADSMATW 109
Query: 188 ASEFDNWLKDALLQGRYEDVNH 209
S + L D LL R ED +H
Sbjct: 110 FSAVFDGLGDVLLDVRIEDQDH 131
>sp|P67665|Y1985_MYCTU Uncharacterized HTH-type transcriptional regulator Rv1985c/MT2039
OS=Mycobacterium tuberculosis GN=Rv1985c PE=1 SV=1
Length = 303
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 129 ANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLR-ALQFDGDSVASW 187
A IP+ +L+ QT A L+ E + +G ++ R + + DS+A+W
Sbjct: 64 AGIPLLRLAAQT--------------ALLESEALAEMGGNASLKRTRITIAVNADSMATW 109
Query: 188 ASEFDNWLKDALLQGRYEDVNH 209
S + L D LL R ED +H
Sbjct: 110 FSAVFDGLGDVLLDVRIEDQDH 131
>sp|Q1B5E3|MHPB_MYCSS 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid
1,2-dioxygenase OS=Mycobacterium sp. (strain MCS)
GN=mhpB PE=3 SV=2
Length = 313
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 89 ELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN----IPVCQLSVQT---- 140
+LA + + E+G + V +DHG PL ++ +A IPV SV T
Sbjct: 90 DLANELATAVLEAGVD-VAISASMDVDHGTVQPLQNLFGDAMARPVIPVFINSVATPLGP 148
Query: 141 -RKDGTHHYNMGKALAPLKDEGVLIIGSGSATHN 173
R+ +G+ LA L D+ VL+IGSG +H+
Sbjct: 149 LRRTRALGTAIGRYLATL-DKRVLVIGSGGLSHD 181
>sp|A1UJP3|MHPB_MYCSK 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid
1,2-dioxygenase OS=Mycobacterium sp. (strain KMS)
GN=mhpB PE=3 SV=2
Length = 313
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 89 ELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN----IPVCQLSVQT---- 140
+LA + + E+G + V +DHG PL ++ +A IPV SV T
Sbjct: 90 DLANELATAVLEAGVD-VAISASMDVDHGTVQPLQNLFGDAMARPVIPVFINSVATPLGP 148
Query: 141 -RKDGTHHYNMGKALAPLKDEGVLIIGSGSATHN 173
R+ +G+ LA L D+ VL+IGSG +H+
Sbjct: 149 LRRTRALGTAIGRYLATL-DKRVLVIGSGGLSHD 181
>sp|A3Q338|MHPB_MYCSJ 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid
1,2-dioxygenase OS=Mycobacterium sp. (strain JLS)
GN=mhpB PE=3 SV=1
Length = 313
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 89 ELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN----IPVCQLSVQT---- 140
+LA + + E+G + V +DHG PL ++ +A IPV SV T
Sbjct: 90 DLANELATAVLEAGVD-VAISASMDVDHGTVQPLQNLFGDAMARPVIPVFINSVATPLGP 148
Query: 141 -RKDGTHHYNMGKALAPLKDEGVLIIGSGSATHN 173
R+ +G+ LA L D+ VL+IGSG +H+
Sbjct: 149 LRRTRALGTAIGRYLATL-DKRVLVIGSGGLSHD 181
>sp|F1MF74|MICA2_BOVIN Protein-methionine sulfoxide oxidase MICAL2 OS=Bos taurus GN=MICAL2
PE=3 SV=2
Length = 1101
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 142 KDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQ 201
KD TH++ M L D+GV+I LRA + D++ S+A E ++ + L
Sbjct: 293 KDCTHYFVMTAKRQSLLDKGVIINDYTDTETLLRAENVNQDNLLSYAREAADFATNYQLP 352
Query: 202 GRYEDVNHYEQ 212
+NHY Q
Sbjct: 353 SLDFAMNHYGQ 363
>sp|A0R1T3|MHPB_MYCS2 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid
1,2-dioxygenase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=mhpB PE=3 SV=2
Length = 313
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 83 PAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN----IPVCQLSV 138
P P ++A + L ESG + + T +DHG PL ++ +A +P+ SV
Sbjct: 83 PLPVDADIANACAESLWESGVD-IAISTAMDVDHGTVQPLQELFGDATARPVVPIFINSV 141
Query: 139 QT-----RKDGTHHYNMGKALAPLKDEGVLIIGSGSATHN 173
T + +G LA L D+ VLI+GSG +H+
Sbjct: 142 ATPLGPLSRSRALGAAVGTFLATL-DKRVLIVGSGGLSHD 180
>sp|B1HUK4|SYA_LYSSC Alanine--tRNA ligase OS=Lysinibacillus sphaericus (strain C3-41)
GN=alaS PE=3 SV=2
Length = 908
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 111 KRGLDHGAWVPLML--MYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSG 168
++GL H + L +YP + + Q+ ++ K+ HH+ L P+ D +L I SG
Sbjct: 3 RQGLIHIVILQYKLGGIYPMKAVDIRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSG 62
Query: 169 SAT 171
AT
Sbjct: 63 VAT 65
>sp|Q9P7R8|YHV3_SCHPO Uncharacterized protein C211.03 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC211.03c PE=1 SV=1
Length = 1462
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 1 MSTVKNTFFISHGS-----PTLSIDESLPARHFLKAW 32
M ++KN F I HG+ PT+ +D +P H +K W
Sbjct: 1387 MESIKNVFMILHGAGALAGPTIEVDPEIPD-HLIKTW 1422
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,023,982
Number of Sequences: 539616
Number of extensions: 4593886
Number of successful extensions: 9914
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9896
Number of HSP's gapped (non-prelim): 19
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)