Query 024528
Match_columns 266
No_of_seqs 156 out of 1191
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10628 LigB family dioxygena 100.0 3.1E-69 6.8E-74 471.7 23.6 238 21-263 5-246 (246)
2 cd07363 45_DOPA_Dioxygenase Th 100.0 5.9E-69 1.3E-73 476.5 25.0 252 6-262 1-253 (253)
3 COG3384 Aromatic ring-opening 100.0 8.7E-69 1.9E-73 465.4 21.6 259 3-264 7-268 (268)
4 PF02900 LigB: Catalytic LigB 100.0 3.9E-60 8.5E-65 424.1 7.9 251 6-263 1-272 (272)
5 TIGR02298 HpaD_Fe 3,4-dihydrox 100.0 3.2E-55 6.9E-60 393.7 23.1 243 1-248 1-266 (282)
6 cd07373 2A5CPDO_A The alpha su 100.0 5.3E-55 1.2E-59 390.7 22.4 239 3-253 2-261 (271)
7 cd07370 HPCD The Class III ext 100.0 1.4E-51 3E-56 370.5 24.0 256 3-262 1-278 (280)
8 cd07362 HPCD_like Class III ex 100.0 1.3E-51 2.9E-56 368.8 21.6 234 7-247 3-257 (272)
9 cd07371 2A5CPDO_AB The alpha a 100.0 4.7E-50 1E-54 358.3 21.5 236 8-247 3-252 (268)
10 cd07320 Extradiol_Dioxygenase_ 100.0 1.7E-48 3.8E-53 346.4 20.7 247 7-262 2-260 (260)
11 cd07952 ED_3B_like Uncharacter 100.0 2.5E-48 5.3E-53 345.2 21.2 225 7-246 2-241 (256)
12 cd07367 CarBb CarBb is the B s 100.0 3.3E-48 7.1E-53 346.2 22.0 227 1-246 1-250 (268)
13 cd07364 PCA_45_Dioxygenase_B S 100.0 9.2E-47 2E-51 337.7 20.6 232 1-245 1-258 (277)
14 cd07949 PCA_45_Doxase_B_like_1 100.0 1.6E-46 3.5E-51 336.0 20.7 222 1-239 1-252 (276)
15 PRK13366 protocatechuate 4,5-d 100.0 1.8E-46 3.9E-51 336.1 20.4 242 1-258 1-274 (284)
16 PRK13372 pcmA protocatechuate 100.0 2.6E-46 5.6E-51 347.3 21.6 242 2-258 149-434 (444)
17 cd07359 PCA_45_Doxase_B_like S 100.0 1.7E-45 3.8E-50 329.5 22.3 230 3-245 1-252 (271)
18 cd07368 PhnC_Bs_like PhnC is a 100.0 1.2E-45 2.6E-50 331.0 20.5 230 1-246 1-259 (277)
19 cd07372 2A5CPDO_B The beta sub 100.0 2.2E-45 4.8E-50 331.2 21.9 237 2-246 1-272 (294)
20 PRK13364 protocatechuate 4,5-d 100.0 1.4E-44 3E-49 323.2 22.3 227 1-245 1-257 (278)
21 PRK03881 hypothetical protein; 100.0 1.7E-44 3.8E-49 344.6 21.9 248 4-264 3-272 (467)
22 PRK13358 protocatechuate 4,5-d 100.0 2.3E-43 5E-48 315.5 21.0 227 1-246 1-250 (269)
23 cd07369 PydA_Rs_like PydA is a 100.0 3.6E-43 7.7E-48 320.0 20.5 235 1-245 1-310 (329)
24 PRK13367 protocatechuate 4,5-d 100.0 7.8E-43 1.7E-47 323.9 19.3 238 1-253 1-265 (420)
25 cd07950 Gallate_Doxase_N The N 100.0 8.6E-43 1.9E-47 312.2 18.8 226 1-239 1-253 (277)
26 cd07951 ED_3B_N_AMMECR1 The N- 100.0 3.8E-42 8.3E-47 305.4 19.3 229 9-249 1-244 (256)
27 PRK13365 protocatechuate 4,5-d 100.0 2E-41 4.4E-46 303.5 22.4 226 1-239 1-253 (279)
28 PRK13363 protocatechuate 4,5-d 100.0 3E-41 6.4E-46 308.1 20.3 205 24-246 72-310 (335)
29 PRK13370 mhpB 3-(2,3-dihydroxy 100.0 1.2E-40 2.6E-45 302.4 21.4 223 1-237 1-281 (313)
30 cd07366 3MGA_Dioxygenase Subun 100.0 2.1E-40 4.5E-45 302.0 21.1 200 24-245 70-305 (328)
31 cd07365 MhpB_like Subunit B of 100.0 4.6E-40 9.9E-45 298.3 21.7 225 1-239 1-283 (310)
32 PRK13373 putative dioxygenase; 100.0 7.2E-38 1.6E-42 281.9 17.2 236 1-239 1-305 (344)
33 COG3885 Uncharacterized conser 99.9 2E-24 4.4E-29 183.1 15.3 218 5-239 3-235 (261)
34 cd07361 MEMO_like Memo (mediat 99.9 2.4E-21 5.3E-26 173.0 17.3 204 6-247 37-244 (266)
35 PRK00782 hypothetical protein; 99.8 4.5E-18 9.7E-23 152.1 15.9 174 40-247 63-243 (267)
36 COG1355 Predicted dioxygenase 99.1 4.3E-09 9.3E-14 93.0 15.9 176 39-247 73-256 (279)
37 PF01875 Memo: Memo-like prote 99.0 2.5E-09 5.5E-14 96.2 9.0 186 38-247 59-255 (276)
38 KOG3086 Predicted dioxygenase 96.3 0.023 4.9E-07 49.9 8.1 144 82-237 99-254 (296)
39 PRK09271 flavodoxin; Provision 86.4 4.5 9.7E-05 33.1 7.9 79 88-172 15-98 (160)
40 TIGR02017 hutG_amidohyd N-form 82.6 15 0.00033 32.8 10.2 98 29-140 124-225 (263)
41 PRK05723 flavodoxin; Provision 81.0 7.8 0.00017 31.6 7.1 95 87-197 14-114 (151)
42 PRK09004 FMN-binding protein M 80.0 9.2 0.0002 30.8 7.2 90 87-197 15-111 (146)
43 PRK03995 hypothetical protein; 78.3 44 0.00096 30.0 11.5 113 40-172 63-191 (267)
44 PF04414 tRNA_deacylase: D-ami 74.3 25 0.00053 30.6 8.6 116 38-173 10-141 (213)
45 PRK08105 flavodoxin; Provision 72.2 20 0.00043 29.0 7.2 92 87-197 15-113 (149)
46 PRK14866 hypothetical protein; 70.4 66 0.0014 31.1 11.2 115 40-173 69-196 (451)
47 PRK06703 flavodoxin; Provision 66.7 27 0.00058 27.9 6.8 75 87-171 15-94 (151)
48 PRK10991 fucI L-fucose isomera 63.2 35 0.00076 34.0 8.0 110 31-169 68-182 (588)
49 TIGR01370 cysRS possible cyste 59.0 35 0.00075 31.5 6.8 90 25-114 189-309 (315)
50 PF00258 Flavodoxin_1: Flavodo 58.9 44 0.00096 26.1 6.7 95 88-197 11-116 (143)
51 PF06506 PrpR_N: Propionate ca 56.1 16 0.00034 30.3 3.8 75 87-177 18-95 (176)
52 cd03556 L-fucose_isomerase L-f 54.9 35 0.00076 33.9 6.4 113 31-168 64-177 (584)
53 PRK08733 lipid A biosynthesis 51.8 22 0.00048 32.2 4.3 46 91-138 184-242 (306)
54 PF05013 FGase: N-formylglutam 51.3 34 0.00073 29.5 5.2 91 28-140 115-217 (222)
55 TIGR01089 fucI L-fucose isomer 50.1 85 0.0018 31.3 8.1 109 32-168 68-180 (587)
56 TIGR03565 alk_sulf_monoox alka 48.2 1.4E+02 0.003 27.6 9.1 87 85-172 23-111 (346)
57 PF13607 Succ_CoA_lig: Succiny 47.7 1.1E+02 0.0024 24.4 7.4 80 87-169 10-91 (138)
58 TIGR01931 cysJ sulfite reducta 46.8 68 0.0015 32.1 7.2 75 88-172 73-155 (597)
59 PRK13193 pyrrolidone-carboxyla 44.6 1.4E+02 0.0031 25.7 8.0 78 29-110 49-135 (209)
60 PRK07308 flavodoxin; Validated 41.4 1.2E+02 0.0027 23.8 6.8 74 87-170 15-93 (146)
61 COG2039 Pcp Pyrrolidone-carbox 41.0 2.1E+02 0.0046 24.6 8.1 82 26-112 46-137 (207)
62 PRK10953 cysJ sulfite reductas 38.9 97 0.0021 31.1 6.9 78 87-172 75-158 (600)
63 PRK05646 lipid A biosynthesis 38.2 90 0.0019 28.2 6.1 48 89-138 181-241 (310)
64 TIGR01918 various_sel_PB selen 38.0 96 0.0021 29.8 6.3 52 87-138 321-372 (431)
65 COG2257 Uncharacterized homolo 35.3 32 0.00068 25.7 2.1 38 66-110 13-52 (92)
66 PF11432 DUF3197: Protein of u 35.1 62 0.0014 24.9 3.7 68 29-104 1-75 (113)
67 PF13812 PPR_3: Pentatricopept 34.5 51 0.0011 18.4 2.7 21 84-104 13-33 (34)
68 PRK00719 alkanesulfonate monoo 34.3 2.3E+02 0.005 26.5 8.4 89 86-175 25-115 (378)
69 PRK13195 pyrrolidone-carboxyla 32.6 2E+02 0.0044 25.1 7.1 79 28-110 49-139 (222)
70 PRK05948 precorrin-2 methyltra 32.1 1.6E+02 0.0034 25.9 6.4 83 84-172 12-105 (238)
71 PF12500 TRSP: TRSP domain C t 31.4 46 0.00099 27.4 2.7 26 147-172 44-70 (155)
72 PF01488 Shikimate_DH: Shikima 30.2 16 0.00035 28.8 -0.1 19 154-172 7-25 (135)
73 COG4558 ChuT ABC-type hemin tr 30.2 96 0.0021 28.3 4.7 16 34-49 226-241 (300)
74 PF10035 DUF2179: Uncharacteri 29.9 63 0.0014 21.1 2.8 22 28-49 28-49 (55)
75 cd00501 Peptidase_C15 Pyroglut 29.9 3.3E+02 0.0072 22.7 8.1 108 28-139 48-168 (194)
76 PF02971 FTCD: Formiminotransf 29.5 93 0.002 25.3 4.1 74 88-168 13-88 (145)
77 PRK13011 formyltetrahydrofolat 29.3 1.3E+02 0.0028 27.2 5.6 77 87-175 17-104 (286)
78 cd07382 MPP_DR1281 Deinococcus 29.1 40 0.00086 30.0 2.1 67 92-167 48-114 (255)
79 cd00491 4Oxalocrotonate_Tautom 29.0 79 0.0017 20.5 3.2 26 132-157 1-26 (58)
80 TIGR02717 AcCoA-syn-alpha acet 28.9 5.2E+02 0.011 24.8 15.5 81 87-172 159-243 (447)
81 PRK13194 pyrrolidone-carboxyla 28.9 2.7E+02 0.0058 24.0 7.2 79 28-110 48-135 (208)
82 COG1355 Predicted dioxygenase 28.8 96 0.0021 28.0 4.5 26 27-53 169-197 (279)
83 TIGR01753 flav_short flavodoxi 28.6 2.4E+02 0.0051 21.5 6.4 76 87-172 12-93 (140)
84 cd07409 MPP_CD73_N CD73 ecto-5 28.4 70 0.0015 28.5 3.7 25 27-52 169-193 (281)
85 TIGR00504 pyro_pdase pyrogluta 27.7 3.5E+02 0.0076 23.2 7.7 29 26-54 44-72 (212)
86 PF02641 DUF190: Uncharacteriz 27.7 1.1E+02 0.0023 23.0 4.0 74 87-164 18-94 (101)
87 PF04918 DltD_M: DltD central 27.5 28 0.0006 28.7 0.8 25 29-55 15-39 (163)
88 cd07491 Peptidases_S8_7 Peptid 27.4 66 0.0014 28.2 3.2 46 129-174 101-149 (247)
89 cd07405 MPP_UshA_N Escherichia 27.1 78 0.0017 28.3 3.7 27 26-53 159-185 (285)
90 TIGR01754 flav_RNR ribonucleot 26.8 3.1E+02 0.0067 21.4 7.0 76 88-171 15-93 (140)
91 COG0426 FpaA Uncharacterized f 26.7 2.3E+02 0.005 27.0 6.8 78 88-172 261-343 (388)
92 cd03409 Chelatase_Class_II Cla 26.6 1.1E+02 0.0024 22.1 4.0 27 7-38 2-28 (101)
93 PF01075 Glyco_transf_9: Glyco 26.5 1.4E+02 0.003 25.4 5.1 22 30-51 2-23 (247)
94 PRK06756 flavodoxin; Provision 26.4 3.2E+02 0.0069 21.4 7.0 75 88-171 16-95 (148)
95 PRK02289 4-oxalocrotonate taut 26.4 93 0.002 20.8 3.2 27 131-157 1-27 (60)
96 cd02911 arch_FMN Archeal FMN-b 26.3 1.6E+02 0.0034 25.7 5.4 78 87-172 124-202 (233)
97 PRK01964 4-oxalocrotonate taut 26.0 89 0.0019 21.0 3.1 27 131-157 1-27 (64)
98 PRK15174 Vi polysaccharide exp 25.9 62 0.0013 32.7 3.1 48 88-138 532-592 (656)
99 PRK13197 pyrrolidone-carboxyla 25.5 3.7E+02 0.008 23.1 7.5 27 27-53 48-74 (215)
100 TIGR01917 gly_red_sel_B glycin 25.1 98 0.0021 29.7 4.0 52 87-138 321-372 (431)
101 COG0028 IlvB Thiamine pyrophos 24.8 5.8E+02 0.013 25.3 9.6 81 5-99 64-144 (550)
102 PRK02220 4-oxalocrotonate taut 24.8 1E+02 0.0022 20.3 3.2 27 131-157 1-27 (61)
103 PRK00745 4-oxalocrotonate taut 24.7 1E+02 0.0022 20.4 3.2 27 131-157 1-27 (62)
104 COG4569 MhpF Acetaldehyde dehy 24.5 32 0.00069 29.9 0.6 17 158-174 3-19 (310)
105 cd07410 MPP_CpdB_N Escherichia 23.9 98 0.0021 27.3 3.7 26 27-53 170-195 (277)
106 PRK13196 pyrrolidone-carboxyla 23.9 4.1E+02 0.0088 22.8 7.4 81 27-109 48-137 (211)
107 COG4031 Predicted metal-bindin 23.8 96 0.0021 26.5 3.3 31 21-51 54-85 (227)
108 cd07406 MPP_CG11883_N Drosophi 23.3 1.1E+02 0.0023 26.9 3.8 27 25-52 156-182 (257)
109 PRK10637 cysG siroheme synthas 22.9 3.1E+02 0.0068 26.4 7.2 114 29-158 25-147 (457)
110 TIGR01470 cysG_Nterm siroheme 22.6 1.6E+02 0.0035 25.0 4.7 124 78-210 70-199 (205)
111 PF02844 GARS_N: Phosphoribosy 22.5 24 0.00052 26.9 -0.4 14 161-174 2-15 (100)
112 PRK05990 precorrin-2 C(20)-met 22.0 4E+02 0.0087 23.1 7.2 23 150-172 87-111 (241)
113 cd03416 CbiX_SirB_N Sirohydroc 22.0 1.6E+02 0.0035 21.4 4.1 29 7-41 2-30 (101)
114 COG2072 TrkA Predicted flavopr 21.5 37 0.0008 32.6 0.5 20 156-175 172-191 (443)
115 TIGR00789 flhB_rel flhB C-term 21.3 68 0.0015 23.4 1.8 26 83-109 21-46 (82)
116 TIGR03567 FMN_reduc_SsuE FMN r 21.0 1.2E+02 0.0025 24.9 3.4 20 28-49 55-74 (171)
117 cd03413 CbiK_C Anaerobic cobal 20.6 1.9E+02 0.0042 21.7 4.3 29 6-41 2-30 (103)
118 PRK00170 azoreductase; Reviewe 20.6 1.2E+02 0.0025 25.2 3.4 25 27-53 75-100 (201)
No 1
>PRK10628 LigB family dioxygenase; Provisional
Probab=100.00 E-value=3.1e-69 Score=471.69 Aligned_cols=238 Identities=32% Similarity=0.613 Sum_probs=217.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHh
Q 024528 21 ESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTE 100 (266)
Q Consensus 21 ~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~ 100 (266)
+++++.++|+++++++ .+|++|||||+||++..+.|+.+++++++|||||||+++|+++|++||+|+||++|++.|++
T Consensus 5 e~~~~~~~l~~lg~~l--~~PkaIlvvSAHW~t~~~~v~~~~~p~~i~DF~GFP~elY~~~Ypa~G~p~LA~~i~~ll~~ 82 (246)
T PRK10628 5 EDNLYTRAWRTLGETL--PRPKAIVVVSAHWYTRGTGVTAMETPRTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAP 82 (246)
T ss_pred cccHHHHHHHHHHHhC--CCCCEEEEEcCCcCCCCCcEEecCCCCcccCCCCCCHHHeeecCCCCCCHHHHHHHHHHhhh
Confidence 3467889999999986 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEEEEecCCccccccccCC
Q 024528 101 SGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGSATHNLRALQFD 180 (266)
Q Consensus 101 ~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~iiaSG~lSH~l~~~~~~ 180 (266)
.|+. ..+.+||+|||+||||++|||++||||||||++...+++.||+||++|++|||++|+|||||+++|||+...+.
T Consensus 83 ~~~~--~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvLIigSG~~~HNL~~~~~~ 160 (246)
T PRK10628 83 VPVT--LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIMLVASGNVVHNLRTVKWH 160 (246)
T ss_pred cCcc--cCCcccCcccchhhhhhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEEEEecCccccchhhhccc
Confidence 8872 23345999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred -CCCcchhHHHHHHHHHHHHHcC-C--HhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCCCceEEecceeeeceee
Q 024528 181 -GDSVASWASEFDNWLKDALLQG-R--YEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLGTIS 256 (266)
Q Consensus 181 -~~~~~~~~~eFD~~v~~~l~~g-d--~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~~~~~~~~~~~~~ 256 (266)
+....+|+.+||+|+.++|+++ | .++|+++.+ .|+++.+||++|||+||++++||++++.+.+.+|++|.+|++|
T Consensus 161 ~~~~~~~wa~~F~~wl~~~l~~~~~~r~~~L~~~~~-~p~a~~ahPt~EH~lPL~~alGAa~~~~~~~~~~~~~~~gsls 239 (246)
T PRK10628 161 GDSSPYPWAESFNQFVKANLTWQGPVEQHPLVNYLQ-HEGGALSNPTPEHYLPLLYVLGAWDGKEPISIPVDGIEMGSLS 239 (246)
T ss_pred CCCCCchHHHHHHHHHHHHHhcCccchHHHHHHHHh-CcChhhcCCChHHHHHHHHHhcCCCCCCCceeeecccccccce
Confidence 2235589999999999999943 5 999999965 5999999999999999999999987766778999999999999
Q ss_pred eeEEEEc
Q 024528 257 YSSYKFT 263 (266)
Q Consensus 257 ~~~~~~~ 263 (266)
|+||+|+
T Consensus 240 m~s~~f~ 246 (246)
T PRK10628 240 MLSVQVG 246 (246)
T ss_pred eEEEEeC
Confidence 9999996
No 2
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=100.00 E-value=5.9e-69 Score=476.53 Aligned_cols=252 Identities=54% Similarity=0.977 Sum_probs=233.5
Q ss_pred eEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCCC
Q 024528 6 NTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAP 85 (266)
Q Consensus 6 ~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~ 85 (266)
|++|+|||+|++.+.+ +...++++++++++. +||+||||||||++....|+++++++++|||+|||+++|+++|+++
T Consensus 1 p~~fi~HG~p~~~~~~-~~~~~~l~~~~~~l~--~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~ 77 (253)
T cd07363 1 PVLFISHGSPMLALED-NPATAFLRELGKELP--KPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAP 77 (253)
T ss_pred CeEEeCCCCcccccCC-ChHHHHHHHHHHhcC--CCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCC
Confidence 7899999999998755 344489999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEEE
Q 024528 86 GAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLII 165 (266)
Q Consensus 86 g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~ii 165 (266)
||++||++|++.++++||| ++...++++|||+||||++|+|+.++||||||+|...++++||+||++|+++|++||+||
T Consensus 78 g~~eLa~~i~~~l~~~gi~-~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~~~~v~ii 156 (253)
T cd07363 78 GSPELAERVAELLKAAGIP-ARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLRDEGVLII 156 (253)
T ss_pred CCHHHHHHHHHHHHhcCCC-ccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhhhCCEEEE
Confidence 9999999999999999996 777788999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccccCCC-CCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCCCceE
Q 024528 166 GSGSATHNLRALQFDG-DSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGENANAE 244 (266)
Q Consensus 166 aSG~lSH~l~~~~~~~-~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~ 244 (266)
|||++||||...+++. .++.+|+++||+|++++|+++|.++++......|.++.+||++|||+||++++||+++.. ++
T Consensus 157 ~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~~l~~~d~~~l~~~~~~~~~~~~ahp~~~h~~pll~~lGa~~~~~-~~ 235 (253)
T cd07363 157 GSGSSVHNLRALRWGGPAPPPPWALEFDDWLKDALTAGDLDALLDYWEKAPHARRAHPTEEHLLPLLVALGAAGGDE-AR 235 (253)
T ss_pred ecCcceechhhhccccCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHhCccHHHcCCChHHHHHHHHHhcCCCCCC-cE
Confidence 9999999999887642 357799999999999999999999977554558999999999999999999999997654 88
Q ss_pred EecceeeeceeeeeEEEE
Q 024528 245 LIHTSWQLGTISYSSYKF 262 (266)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~ 262 (266)
.++++|.++++||+||+|
T Consensus 236 ~~~~~~~~~~~~~~s~~~ 253 (253)
T cd07363 236 RLHDSIEYGSLSMSSYRF 253 (253)
T ss_pred EeecceecccceEEEEEC
Confidence 899999999999999997
No 3
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-69 Score=465.41 Aligned_cols=259 Identities=39% Similarity=0.759 Sum_probs=242.9
Q ss_pred CcceEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-CeEEeccCCCcccCCCCCcccccccc
Q 024528 3 TVKNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDV-PTVNVVQQNDVIYDFYNFPEQMYKLK 81 (266)
Q Consensus 3 ~~~~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~-~~i~~~~~~~~~~Df~gfp~~~y~~~ 81 (266)
.++|++|+|||+|++.+++ +++.++++++++++.+.+||+|||+||||++++ ..|++.++++++|||||||+++|+++
T Consensus 7 ~~~p~LflshgsP~~~~~~-n~~~~~l~~lG~~~~e~rp~tIiV~SaHw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~ 85 (268)
T COG3384 7 TMMPALFLSHGSPMLALED-NAATRGLRELGRELPELRPDTIIVFSAHWETRGAYHVTASEHPETIHDFYGFPDELYDVK 85 (268)
T ss_pred hhccceeecCCCcccccCc-cHHHHHHHHHHHhhhhcCCCEEEEEeceEEecCceeEEcccCcceeeccCCCCHHHHhcc
Confidence 4689999999999998854 788899999999999999999999999999988 88999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCC
Q 024528 82 YPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEG 161 (266)
Q Consensus 82 y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~ 161 (266)
|+++|+||||++|++.+.+.|++ . ...+||+|||+||||++|||++||||||||+++.++++.+|++|++||++|+|.
T Consensus 86 Y~a~G~peLa~~i~~~l~~~~v~-a-~~~~~gLDHGtwvpL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree~ 163 (268)
T COG3384 86 YPAPGSPELAQRIVELLAKLGVP-A-DAPSWGLDHGTWVPLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEG 163 (268)
T ss_pred CCCCCCHHHHHHHHHHhcccCcc-c-cCCccCCCccceeeehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999994 3 337899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHH--cCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCC
Q 024528 162 VLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALL--QGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGE 239 (266)
Q Consensus 162 v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~--~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~ 239 (266)
|+|||||+++|||+...+.+....+|+++||+|+++.|. +||.+.++++.+..|++..++|+++|++|+++++|+.++
T Consensus 164 vlilaSGs~~H~l~~~~~~~~~~~~~a~~F~~~~~~~v~~~~~d~~~~~~~~~~~p~~~~~~~~~eH~~pL~~~lG~~~~ 243 (268)
T COG3384 164 VLILASGSLVHNLRLLKWAGDGPYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAEPGEEHLLPLLYALGAWDG 243 (268)
T ss_pred EEEEecCcceeehhhhhhcCCCCChhHHHHHHHHHHHHHHhccchHHHhHhhhhchHhhhCCCCccchHHHHHHhhccCC
Confidence 999999999999999988655567999999999999996 459999999987799999999999999999999999998
Q ss_pred CCceEEecceeeeceeeeeEEEEcc
Q 024528 240 NANAELIHTSWQLGTISYSSYKFTA 264 (266)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (266)
+.+++++-+.+..+++||.+.+|..
T Consensus 244 ~~~~ei~~d~~~~~s~sm~~~~F~~ 268 (268)
T COG3384 244 DEKVEIVTDLFESGSLSMLNAQFPE 268 (268)
T ss_pred CCCeeEEecccccccceeEEEecCC
Confidence 8999999999999999999999963
No 4
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=100.00 E-value=3.9e-60 Score=424.14 Aligned_cols=251 Identities=41% Similarity=0.770 Sum_probs=198.0
Q ss_pred eEEEEcCCCCCCCCCCC------chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CC--eEEeccCCCcccCCCC
Q 024528 6 NTFFISHGSPTLSIDES------LPARHFLKAWKEQVFTQRPNSILVISGHWETD-----VP--TVNVVQQNDVIYDFYN 72 (266)
Q Consensus 6 ~~~fisHg~P~~~~~~~------~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-----~~--~i~~~~~~~~~~Df~g 72 (266)
|++|+|||.|++...+. .++.++++++++++++.+||+||||||||+++ .+ .|..++.++.+|||+|
T Consensus 1 p~~~~sHgp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~g 80 (272)
T PF02900_consen 1 PAYFISHGPPMLPLEDPEPEGKWQRTFAALQELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYG 80 (272)
T ss_dssp -EEEEE--HHHHHCCH-CCCCCCHHHHHHHHHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS---
T ss_pred CEEEEeCCCccccccCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCccccccccc
Confidence 79999999444443221 25678999999999999999999999999982 22 4666777899999999
Q ss_pred CccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC----CCChHHHH
Q 024528 73 FPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT----RKDGTHHY 148 (266)
Q Consensus 73 fp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~----~~~~~~~~ 148 (266)
||++.|+++|+++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.++||||||+|+ ..++++||
T Consensus 81 fp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~ 159 (272)
T PF02900_consen 81 FPPELYEIKYPAPGDPELAERIAEHLRKAGFD-VAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHY 159 (272)
T ss_dssp --SSSBSSS--EEB-HHHHHHHHHHHHHTTS--EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHH
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhcCCC-EEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHH
Confidence 99999999999999999999999999999996 77789999999999999999999999999999998 78999999
Q ss_pred HHHHHhcccc---CCCeEEEEecCCccccccccCCCCCcc-hhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCc
Q 024528 149 NMGKALAPLK---DEGVLIIGSGSATHNLRALQFDGDSVA-SWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWP 224 (266)
Q Consensus 149 ~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~~~~~~~~-~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~ 224 (266)
+||++|++++ ++||+|||||++||||...++++ .. +++.+||+|++++|++||.++|+++..+.+....+|| +
T Consensus 160 ~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~~~--~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~~~~~~-~ 236 (272)
T PF02900_consen 160 RLGRALRKARESSDERVAVIASGGLSHNLRDPRPGG--YDPPWAEEFDEWILDALESGDLEALLDLDDEEPEAAAAHP-E 236 (272)
T ss_dssp HHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTTTS-----CHHHHHHHHHHCCCCH-HHHTCTTGGHCCHCHHHHGC-C
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCcccCCCcccccc--hhhHhHHHHHHHHHHHHHcCChHHHhhcChhhHHHHhCCC-h
Confidence 9999999998 89999999999999999998753 33 5999999999999999999999999776788888999 9
Q ss_pred CcHHHHHHHHccCCCCCceEEecceeeeceeeeeEEEEc
Q 024528 225 DHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKFT 263 (266)
Q Consensus 225 ~h~~pl~~~lGa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (266)
|||+||++++||+++ .+..++.+.++++++.+|.||
T Consensus 237 ~~~~~~~~~~GA~~~---~~~~~~~~~y~~~~~~~~~~g 272 (272)
T PF02900_consen 237 EHFRPWLVAAGAAGG---AEIKAEVLSYEPPFGWGYGFG 272 (272)
T ss_dssp CCCHHHHHHHHTS-S---ECSCEEEEECCCEEETTEEE-
T ss_pred hHHHHHHHHHHhcCC---CccceeeEEEeCcceeEEEeC
Confidence 999999999999976 445566788999999999986
No 5
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=100.00 E-value=3.2e-55 Score=393.73 Aligned_cols=243 Identities=21% Similarity=0.262 Sum_probs=211.2
Q ss_pred CCCcceEEEEcCCCCCCCCCCC--------chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEeccCCCcccCCC
Q 024528 1 MSTVKNTFFISHGSPTLSIDES--------LPARHFLKAWKEQVFTQRPNSILVISGHWETD-VPTVNVVQQNDVIYDFY 71 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~~~--------~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-~~~i~~~~~~~~~~Df~ 71 (266)
|++|+.++++||. |++.+++. .++.++++++++++++.+||+||||||||.++ ...|+..++++++|||+
T Consensus 1 Mg~iv~a~~~~H~-P~i~i~e~~g~~~~~~~~~~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~~~i~~~~~~~g~~~~~ 79 (282)
T TIGR02298 1 MGKLALAAKITHV-PSMYLSELPGPLRGCRQGAIDGHKEISRRAKEMGVDTIVVFDTHWLVNSGYHINCNDQFSGSYTSH 79 (282)
T ss_pred CcceEEEEEeccC-CcEEECCCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEECCCCCcCCCeEEecCCCCcceecCC
Confidence 9999999999998 88766442 36779999999999999999999999999987 57888888899999999
Q ss_pred CCccccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCCCCeEEEEec-CCCChHHHH
Q 024528 72 NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQ-TRKDGTHHY 148 (266)
Q Consensus 72 gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~-~~~~~~~~~ 148 (266)
|||+++|+++|+++||++||++|++.++++||+ +. .+.++++|||+||||+||+|+.++||||||+| ...+++++|
T Consensus 80 g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~ 158 (282)
T TIGR02298 80 ELPHFIQDLRYDYPGNPALGQLIADEAQEHGVK-TLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESR 158 (282)
T ss_pred CCChhhhCceeeCCCCHHHHHHHHHHHHHCCCc-eeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHH
Confidence 999999999999999999999999999999995 65 46789999999999999999999999999998 557999999
Q ss_pred HHHHHhccc---cCCCeEEEEecCCccccccccCC-CCCcchhHHH----HHHHHHHHHHcCCHhHHhcchhcCchhhhc
Q 024528 149 NMGKALAPL---KDEGVLIIGSGSATHNLRALQFD-GDSVASWASE----FDNWLKDALLQGRYEDVNHYEQKAPCAKKA 220 (266)
Q Consensus 149 ~lG~aL~~~---~d~~v~iiaSG~lSH~l~~~~~~-~~~~~~~~~e----FD~~v~~~l~~gd~~~l~~~~~~~p~~~~a 220 (266)
+||++|+++ +++||+|||||++||||...... +.++.+|+.+ ||+++++++++||.++|+++. |.+...
T Consensus 159 ~lG~al~~~i~~~~~rV~iIaSG~lSH~L~~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~gd~~~l~~~~---~~~~~~ 235 (282)
T TIGR02298 159 ALGEAIRKAIEQSDGRVAVLASGSLSHRFWDNKDLAPEGMTTIASEFNRQVDLRVLELWRERDYREFCAML---PDYAVK 235 (282)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecccceecCcccCCCcccCCchhhHHHHHHHHHHHHHHHcCCHHHHHHhC---HHHHHh
Confidence 999999999 78999999999999999876411 2245678666 488899999999999999983 333444
Q ss_pred CCCcCcHHHHHHHHccCCC---CCceEEecc
Q 024528 221 HPWPDHFYPLHVAMGAAGE---NANAELIHT 248 (266)
Q Consensus 221 ~p~~~h~~pl~~~lGa~~~---~~~~~~~~~ 248 (266)
.+++|+++++++++||.+. ..++++++.
T Consensus 236 ~age~g~~~~~~l~Gal~~~~~~~~~~~l~~ 266 (282)
T TIGR02298 236 CNGEGGMHDTVMLFGALGWDDYDGEVEVITE 266 (282)
T ss_pred cCcccChHHHHHHHhccCCCCccccceEecc
Confidence 4789999999999999952 345677765
No 6
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=100.00 E-value=5.3e-55 Score=390.72 Aligned_cols=239 Identities=19% Similarity=0.233 Sum_probs=201.5
Q ss_pred CcceEEEEcCCCCCCCCCCC----chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CeEEec-----cCCCcccCCC
Q 024528 3 TVKNTFFISHGSPTLSIDES----LPARHFLKAWKEQVFTQRPNSILVISGHWETDV--PTVNVV-----QQNDVIYDFY 71 (266)
Q Consensus 3 ~~~~~~fisHg~P~~~~~~~----~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~--~~i~~~-----~~~~~~~Df~ 71 (266)
.++ ++|++||+|++.+.+. .++.++++++++++++.+||+||||||||+++. ..|+.. ..++.+|||+
T Consensus 2 ~iv-~~f~~hh~P~~~~~~~~~~~~~~~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~ 80 (271)
T cd07373 2 TIV-SAFLVPGSPLPQLRPDVPSWGQFAAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFG 80 (271)
T ss_pred ceE-EEEecCCCCccccCCCcccHHHHHHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhc
Confidence 445 4689999787666443 268899999999998889999999999999844 445431 2356789999
Q ss_pred CCccccccccCCCCCCHHHHHHHHHHHHhCCCCccc-ccCC-CCccccchhhhhhh-ccCCCCCeEEEEecCCCChHHHH
Q 024528 72 NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVN-EDTK-RGLDHGAWVPLMLM-YPEANIPVCQLSVQTRKDGTHHY 148 (266)
Q Consensus 72 gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~-~~~~-~~lDHG~~vPL~~l-~p~~~iPvV~vs~~~~~~~~~~~ 148 (266)
|||. +++|+++||++|++.++++||+ +. .+.+ +++|||+||||+|| +|+.++||||+|+|..+++++||
T Consensus 81 g~p~-------~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~~~~~~~~~ 152 (271)
T cd07373 81 ELPY-------DIRSDTALAEACVTACPEHGVH-ARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNLYHSGEITE 152 (271)
T ss_pred Cccc-------ccCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCCCCCHHHHH
Confidence 9884 7999999999999999999995 65 5554 59999999999999 77899999999999889999999
Q ss_pred HHHHHhcc-ccC--CCeEEEEecCCccccccccC--C-CCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCC
Q 024528 149 NMGKALAP-LKD--EGVLIIGSGSATHNLRALQF--D-GDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHP 222 (266)
Q Consensus 149 ~lG~aL~~-~~d--~~v~iiaSG~lSH~l~~~~~--~-~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p 222 (266)
+||++|++ +++ +||+|||||+|||||...++ . +.++++|+.+||+|+++++++||.++|+++ .|.+..+||
T Consensus 153 ~lG~al~~~l~~~~~rV~iIgSG~lSH~L~~~~~~~~~~~~~~p~~~~FD~~~~~~l~~gd~~~ll~~---~~~~~~~~~ 229 (271)
T cd07373 153 KLGAIAADAAKDQNKRVAVVGVGGLSGSLFREEIDPREDHIANEEDDKWNRRVLKLIEAGDLPALREA---MPVYAKAAR 229 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEEecccccCcCcCCCcCCCCCccCccHHHHHHHHHHHHHcCCHHHHHhc---CHHHHHHhc
Confidence 99999996 665 99999999999999976542 1 224789999999999999999999999976 678899999
Q ss_pred CcCcHHHHHHHHccCCCCCc-eEEecceeeec
Q 024528 223 WPDHFYPLHVAMGAAGENAN-AELIHTSWQLG 253 (266)
Q Consensus 223 ~~~h~~pl~~~lGa~~~~~~-~~~~~~~~~~~ 253 (266)
++|||+|+++++||+++... +++++.++.+|
T Consensus 230 ~~~g~~pl~~~~Ga~~~~~~~~~~l~ye~~~G 261 (271)
T cd07373 230 VDMGFKHLHWILGALGGKFSGANVLGYGPSYG 261 (271)
T ss_pred ccCChHHHHHHHHhcCCCccCcceeeccCCcc
Confidence 99999999999999987654 77888776655
No 7
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=100.00 E-value=1.4e-51 Score=370.45 Aligned_cols=256 Identities=20% Similarity=0.248 Sum_probs=213.8
Q ss_pred CcceEEEEcCCCCCCCCCC--------CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCeEEeccCCCcccCCCCC
Q 024528 3 TVKNTFFISHGSPTLSIDE--------SLPARHFLKAWKEQVFTQRPNSILVISGHWETD-VPTVNVVQQNDVIYDFYNF 73 (266)
Q Consensus 3 ~~~~~~fisHg~P~~~~~~--------~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-~~~i~~~~~~~~~~Df~gf 73 (266)
+|+.++++||. |.+.+++ .+++.++++++++++.+.+||+||||||||++. ...|+..+++.++|||+||
T Consensus 1 ~iv~a~~~~H~-P~i~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pd~ivviS~H~~~~~~~~i~~~~~~~g~~~~~g~ 79 (280)
T cd07370 1 KIVLAAKITHV-PTMMLSEQPGPNKGCRQAAIDGLKEIGRRARELGVDTIVVFDTHWLVNAGYHINANARFSGLFTSNEL 79 (280)
T ss_pred CeEEEEecCCC-CeEEecCCCCCccchHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeEeccCCCCceecCCCC
Confidence 45667777774 4343322 135778999999999888999999999999885 5778888888899999999
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHH
Q 024528 74 PEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMG 151 (266)
Q Consensus 74 p~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG 151 (266)
|.+.|+++|+++||++||++|++.+.+.|+| ++ .+.++++|||+||||++|+|+.++||||||+|...+++++++||
T Consensus 80 p~~~~~i~~~~~gd~ela~~i~~~~~~~g~~-~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG 158 (280)
T cd07370 80 PHFIADMPYDYAGDPELAHLIAEEATEHGVK-TLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLG 158 (280)
T ss_pred CchhcCCCCCCCCCHHHHHHHHHHHHHCCCC-eeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHH
Confidence 9999999999999999999999999999996 44 56789999999999999999999999999999999999999999
Q ss_pred HHhccc---cCCCeEEEEecCCccccccccCCCC------CcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCC
Q 024528 152 KALAPL---KDEGVLIIGSGSATHNLRALQFDGD------SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHP 222 (266)
Q Consensus 152 ~aL~~~---~d~~v~iiaSG~lSH~l~~~~~~~~------~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p 222 (266)
++|+++ +++||+|||||++||++....+++. ...+|+++||+|++++|+++|.++|+++. .+....+++
T Consensus 159 ~al~~~~~~~~~~v~iIaSG~lsH~l~~~~~~~~~~~~~~~~~p~~~~fD~~~~~~i~~gD~~~L~~~~--~~~~~~~~g 236 (280)
T cd07370 159 EAIRRAIAASDRRVALLASGSLSHRFWPNRELEAHEDPFTISSPFNRQVDLRVLELWKEGRHAEFLDML--PDYARRCAG 236 (280)
T ss_pred HHHHHHHHhcCCCEEEEEeccccccCccCCCccccccccccCChhHHHHHHHHHHHHHcCCHHHHHHhC--HHHHHHhCc
Confidence 999998 5679999999999999876655321 14589999999999999999999999983 245556777
Q ss_pred C--cCcHHHHHHHHccCCCCCceEEecceeeeceeeeeEEEE
Q 024528 223 W--PDHFYPLHVAMGAAGENANAELIHTSWQLGTISYSSYKF 262 (266)
Q Consensus 223 ~--~~h~~pl~~~lGa~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (266)
+ .+||++++.++|+.+.+.+.++++.-..-++.+|..-.|
T Consensus 237 ~~g~~~~l~l~~alG~~~~~~~~~~~~~ye~~~g~g~~v~~~ 278 (280)
T cd07370 237 EGGMHDTAMLFGALGWDDYDGKAEVVTEYFPSSGTGQVNVWF 278 (280)
T ss_pred cCChHHHHHHHhhhCccccccceeEecccCCCCccceEEEEe
Confidence 6 889999999999887777778776433344556655444
No 8
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=100.00 E-value=1.3e-51 Score=368.76 Aligned_cols=234 Identities=22% Similarity=0.291 Sum_probs=195.0
Q ss_pred EEEEcCCCCCCCCCC-C----c----hHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC-eEEeccCCCcccCCCCCccc
Q 024528 7 TFFISHGSPTLSIDE-S----L----PARHFLKAWKEQVFTQRPNSILVISGHWETDVP-TVNVVQQNDVIYDFYNFPEQ 76 (266)
Q Consensus 7 ~~fisHg~P~~~~~~-~----~----~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~-~i~~~~~~~~~~Df~gfp~~ 76 (266)
++++||. |+++++ . . +|.++++++++++++.+||+||||||||++... .+.........+|++|||+.
T Consensus 3 a~~~pH~--P~i~~~~~~~~~~~~~~~t~~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~ 80 (272)
T cd07362 3 AMLAPHV--PSMCHEENPPENQGCLVGAIKGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDL 80 (272)
T ss_pred ccccCCC--CEeecCCCCCchhhhHHHHHHHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCch
Confidence 5789994 444433 1 1 367899999999988999999999999999863 33334443456899999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCCCCeEEEEecC-CCChHHHHHHHHH
Q 024528 77 MYKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT-RKDGTHHYNMGKA 153 (266)
Q Consensus 77 ~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~-~~~~~~~~~lG~a 153 (266)
+|+++|+++||++||++|++.++++||+ ++ .+.++++|||+||||+||+|+.++||||||+|. .+++++||+||++
T Consensus 81 ~~~~~y~~~g~~~LA~~i~~~l~~~Gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~a 159 (272)
T cd07362 81 ISDVPYDYPGDPELGRLLVEEGQEAGLR-VKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEV 159 (272)
T ss_pred hhccccCCCCCHHHHHHHHHHHHHcCCc-eeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999996 65 345799999999999999999999999999998 6899999999966
Q ss_pred hcccc---CCCeEEEEecCCccccccccCC--C-CCc-chhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCC-cC
Q 024528 154 LAPLK---DEGVLIIGSGSATHNLRALQFD--G-DSV-ASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPW-PD 225 (266)
Q Consensus 154 L~~~~---d~~v~iiaSG~lSH~l~~~~~~--~-~~~-~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~-~~ 225 (266)
|+++. ++||+|||||++||||....+. + .++ .+|+++||+|+++++++||.++|+++..+ ....++ +|
T Consensus 160 i~~al~~~~~rv~ii~SG~lsH~l~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~----~~~~A~~e~ 235 (272)
T cd07362 160 IGKALLESDKRVVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQLLREGQFQEACNMLPQ----YARAAGVES 235 (272)
T ss_pred HHHHHHhhCCCEEEEEeCcccccCCCCCCCcccccCCCChhHHHHHHHHHHHHHcCCHHHHHHhCHH----HHHHhcCCc
Confidence 65542 7999999999999999887662 1 233 57999999999999999999999999654 455666 99
Q ss_pred cHHHHHHHHccCCCCCceEEec
Q 024528 226 HFYPLHVAMGAAGENANAELIH 247 (266)
Q Consensus 226 h~~pl~~~lGa~~~~~~~~~~~ 247 (266)
+++++++++|++.+..+...++
T Consensus 236 g~~~~~~~~g~~~g~~~~~~v~ 257 (272)
T cd07362 236 GGRHLTVMLGVMQGWGKVAELH 257 (272)
T ss_pred ccHHHHHHHHHhcCCcccceec
Confidence 9999999999998765444444
No 9
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=100.00 E-value=4.7e-50 Score=358.27 Aligned_cols=236 Identities=19% Similarity=0.220 Sum_probs=188.0
Q ss_pred EEEcCCCCCCCCCCC----chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEecc-CCCcccCCCCCccccccccC
Q 024528 8 FFISHGSPTLSIDES----LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQ-QNDVIYDFYNFPEQMYKLKY 82 (266)
Q Consensus 8 ~fisHg~P~~~~~~~----~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~-~~~~~~Df~gfp~~~y~~~y 82 (266)
.|++||+|.+.+.+. ..+.++|+++++++++.+||+||||||||++..+.++++. ..+..++..+|+ ..|+++|
T Consensus 3 ~~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~-~~~~~~y 81 (268)
T cd07371 3 AFLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWP-EFGRLDY 81 (268)
T ss_pred eEecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccc-hhceeee
Confidence 466676577765432 2567899999999988899999999999999886555533 345555567886 7789999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccc--cCCCCccccchhhhhhhccCCCCCeEEEEecCC-CChHHHHHHHHHhccc-c
Q 024528 83 PAPGAPELAKRVKQLLTESGFNHVNE--DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR-KDGTHHYNMGKALAPL-K 158 (266)
Q Consensus 83 ~~~g~~eLa~~i~~~l~~~g~d~~~~--~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~-~~~~~~~~lG~aL~~~-~ 158 (266)
+++||++||++|++.++++||+ ++. +.++++|||+||||+||+|+.++||||+|+|.. +++++||+||++|+++ +
T Consensus 82 ~~~g~~eLA~~i~~~~~~~gi~-~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~ 160 (268)
T cd07371 82 SINVDVELAEACVEEGRKAGLV-TRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNLYLSGEETEGEMDLAGKATR 160 (268)
T ss_pred cCCCCHHHHHHHHHHHHHCCCc-EEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 664 688999999999999999999999999999876 8999999999999854 6
Q ss_pred C--CCeEEEEecCCccccccccCCCC---CcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHH
Q 024528 159 D--EGVLIIGSGSATHNLRALQFDGD---SVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVA 233 (266)
Q Consensus 159 d--~~v~iiaSG~lSH~l~~~~~~~~---~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~ 233 (266)
+ +||+|||||++||||...+++.. ++.+++++||+++++.+++||.++|+++..+......++++.+|+++++.+
T Consensus 161 ~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~gd~~~l~~~~~~~~~~a~~~~g~~~~~~l~ga 240 (268)
T cd07371 161 DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLELMEQGDMSALFELLPQYIKEARADMGSKAFTWMLGA 240 (268)
T ss_pred HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcccccHHHHHHHHHh
Confidence 5 89999999999999977665311 356999999999999999999999999854433333344455566665555
Q ss_pred HccCCCCCceEEec
Q 024528 234 MGAAGENANAELIH 247 (266)
Q Consensus 234 lGa~~~~~~~~~~~ 247 (266)
+|... .++++++
T Consensus 241 l~~~~--~~~~v~~ 252 (268)
T cd07371 241 MGYPE--LAAEVHG 252 (268)
T ss_pred cCCcc--cCccEee
Confidence 55542 3455554
No 10
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=100.00 E-value=1.7e-48 Score=346.44 Aligned_cols=247 Identities=20% Similarity=0.282 Sum_probs=207.9
Q ss_pred EEEEcCCCCCCCCCCCc--hHHHHHHHHHHHhhcCCCCEEEEEeCCCCC--CCCeEEeccCCCcccCCCCCccccccccC
Q 024528 7 TFFISHGSPTLSIDESL--PARHFLKAWKEQVFTQRPNSILVISGHWET--DVPTVNVVQQNDVIYDFYNFPEQMYKLKY 82 (266)
Q Consensus 7 ~~fisHg~P~~~~~~~~--~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~--~~~~i~~~~~~~~~~Df~gfp~~~y~~~y 82 (266)
++|+|||+|.+..++.. ...++++++++++++.+||+||||||||.. ....|+..+++++.||| ...|++.|
T Consensus 2 ~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~ 77 (260)
T cd07320 2 AIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSG----QWGRRPVY 77 (260)
T ss_pred CCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceecccccc----ccCCCCCc
Confidence 57999997766554322 222468889988877899999999999995 44566667778888997 44677788
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccccCC-CCccccchhhhhhhccC-CCCCeEEEEecCCC-ChHHHHHHHHHhcccc-
Q 024528 83 PAPGAPELAKRVKQLLTESGFNHVNEDTK-RGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRK-DGTHHYNMGKALAPLK- 158 (266)
Q Consensus 83 ~~~g~~eLa~~i~~~l~~~g~d~~~~~~~-~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~-~~~~~~~lG~aL~~~~- 158 (266)
++++|++||++|++.+.+ |++ +....+ +++|||+||||.||+|+ .++|||||+++... ++++|++||++|++++
T Consensus 78 ~~~~d~ela~~l~~~~~~-~~~-~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~ 155 (260)
T cd07320 78 DVKGDPDLAWEIAEELIK-EIP-VTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVE 155 (260)
T ss_pred CCCCCHHHHHHHHHHHHh-cCC-EEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 995 654444 69999999999999998 89999999998776 8999999999999998
Q ss_pred --CCCeEEEEecCCccccccccCC-CCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHc
Q 024528 159 --DEGVLIIGSGSATHNLRALQFD-GDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMG 235 (266)
Q Consensus 159 --d~~v~iiaSG~lSH~l~~~~~~-~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lG 235 (266)
++||+|||||++|||+...++. .....+|+++||++++++|+++|.++|+++. |..+.+|++.||++|+++++|
T Consensus 156 ~~~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~efD~~~~~~l~~~d~~~l~~~~---~~~~~~~~~~~g~~~~~~~~g 232 (260)
T cd07320 156 PSDLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEFDKYVIDNLEELDPVEFKNMH---QYLTISNATPCGFHPLLILLG 232 (260)
T ss_pred hcCCcEEEEEeCccccCCCCCCcccccCcCcchHHHHHHHHHHHHcCCHHHHhhcC---hHHHhcCCCccCHHHHHHHHH
Confidence 8899999999999999777542 1235689999999999999999999999873 666899999999999999999
Q ss_pred cCCCCCc-eEEecceeeeceeeeeEEEE
Q 024528 236 AAGENAN-AELIHTSWQLGTISYSSYKF 262 (266)
Q Consensus 236 a~~~~~~-~~~~~~~~~~~~~~~~~~~~ 262 (266)
|+++..+ .+++++.+..++.||.+..|
T Consensus 233 a~~~~~~~~~~~~~~~~~~~vg~~~~~~ 260 (260)
T cd07320 233 ALDGKERKDLFTVYGIPSSSTGYAAAIL 260 (260)
T ss_pred hcCCCccceEEeecCCCCCCceEEEEEC
Confidence 9987655 67788888788999988876
No 11
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=100.00 E-value=2.5e-48 Score=345.19 Aligned_cols=225 Identities=18% Similarity=0.259 Sum_probs=187.7
Q ss_pred EEEEcCCCCCCCCCC--CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCC
Q 024528 7 TFFISHGSPTLSIDE--SLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPA 84 (266)
Q Consensus 7 ~~fisHg~P~~~~~~--~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~ 84 (266)
++|+|||+|++.... .+++.+++++.+.+ ..+||+||||||||......++++..+ .++||+|||.+.|+++|
T Consensus 2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~--~~~Pd~IvvispH~~~~~~~~~i~~~~-~~~g~~~~p~~~~~~~~-- 76 (256)
T cd07952 2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAK--NDDPDVLVVITPHGIRLSGHVAVILTE-YLEGTLRTNKVLIRSKY-- 76 (256)
T ss_pred eEEcCCCCccCCCCCcchHHHHHHHHHHHHH--hcCCCEEEEECCCcccccCceEEeecC-eeeeecccCCCceEEec--
Confidence 589999998876533 23556677765543 578999999999999877766666543 48999999999887767
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccc---------cCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhc
Q 024528 85 PGAPELAKRVKQLLTESGFNHVNE---------DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALA 155 (266)
Q Consensus 85 ~g~~eLa~~i~~~l~~~g~d~~~~---------~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~ 155 (266)
|||++||++|.+.++++|++ +.. ...+++|||+||||.||+|. ||||+|++..++++++++||++|+
T Consensus 77 ~~d~ela~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~---pvV~is~~~~~~~~~~~~lG~aL~ 152 (256)
T cd07952 77 PNDRELANEIYKSARADGIP-VLGINFATSSGDNSDFPLDWGELIPLSFLKKR---PIVLITPPRLLPREELVEFGRALG 152 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCc-eeeccchhhccccCCCCCCccccccHhhCCCC---CeEEEccccCCCHHHHHHHHHHHH
Confidence 69999999999999999994 542 23688999999999999985 999999977679999999999999
Q ss_pred cc---cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHH
Q 024528 156 PL---KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHV 232 (266)
Q Consensus 156 ~~---~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~ 232 (266)
++ +++||+|||||++||++....++ ++++|+++||+|++++|+++|.++|+++.+. +.+|++.|||+|+++
T Consensus 153 ~~~~~~~~~vliIaSGdlSH~l~~~~p~--~~~~~a~~fD~~~~~~l~~~d~~~l~~~~~~----~~~~a~~cg~~pl~~ 226 (256)
T cd07952 153 KALEGYEKRVAVIISADHAHTHDPDGPY--GYSPDAAEYDAAIVEAIENNDFEALLELDDE----LIEKAKPDSYWQLLI 226 (256)
T ss_pred HHHHhcCCcEEEEEecCccccCCCCCCC--CCCcchHHHHHHHHHHHHcCCHHHHHhCCHH----HHHHhhhcCHHHHHH
Confidence 98 57799999999999999765433 4578999999999999999999999998544 788899999999999
Q ss_pred HHccCCCC-CceEEe
Q 024528 233 AMGAAGEN-ANAELI 246 (266)
Q Consensus 233 ~lGa~~~~-~~~~~~ 246 (266)
++|++... .+++++
T Consensus 227 ~lga~~~~~~~~~vl 241 (256)
T cd07952 227 LAGILESSPRKSKVL 241 (256)
T ss_pred HHhhccCCCccceEE
Confidence 99998653 356665
No 12
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=100.00 E-value=3.3e-48 Score=346.22 Aligned_cols=227 Identities=24% Similarity=0.304 Sum_probs=186.5
Q ss_pred CCCcceEEEEcCCCCCCCCC-CC---chHHHHHHHHHHHhhcCCCCEEEEEeC-CCCC----CCCeEEeccCCCcccCCC
Q 024528 1 MSTVKNTFFISHGSPTLSID-ES---LPARHFLKAWKEQVFTQRPNSILVISG-HWET----DVPTVNVVQQNDVIYDFY 71 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~-~~---~~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~~----~~~~i~~~~~~~~~~Df~ 71 (266)
|++|+.++++|| +++.-. +. .++.++++++++++++.+||+|||||| ||.+ ..+.++++...+ .+||+
T Consensus 1 M~~iv~~~~~~H--~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~-~~~~~ 77 (268)
T cd07367 1 MAKIVGAAATSH--ILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADS-YTPFG 77 (268)
T ss_pred CceeEEEEecCC--cCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccc-cccCC
Confidence 999999999999 443321 11 266889999999998899999999999 5554 235555543332 33554
Q ss_pred --CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCC----ChH
Q 024528 72 --NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK----DGT 145 (266)
Q Consensus 72 --gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~----~~~ 145 (266)
|||+. .++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.++||||||+|... +++
T Consensus 78 ~~g~p~~------~~~gd~~LA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~ 150 (268)
T cd07367 78 DMDIPRE------LFPGHREFARAFVRQAAEDGFD-LAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPR 150 (268)
T ss_pred cCCCCcc------cCCCCHHHHHHHHHHHHHcCCC-eeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHH
Confidence 88864 5799999999999999999996 7878889999999999999999999999999998875 489
Q ss_pred HHHHHHHHhccc------cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhh
Q 024528 146 HHYNMGKALAPL------KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKK 219 (266)
Q Consensus 146 ~~~~lG~aL~~~------~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~ 219 (266)
+||+||++|+++ +++||+|||||+|||||.... ..+++++||+|+++++++||.++|+++.. ....
T Consensus 151 ~~~~lG~al~~~i~~~~~~d~rV~iiaSGgLSH~l~~~~-----~~~~~~efD~~i~~~l~~gd~~~L~~~~~---~~~~ 222 (268)
T cd07367 151 RCWALGKVLAQYVEKRRPAGERVAVIAAGGLSHWLGVPR-----HGEVNEAFDRMFLDLLEGGNGERLAGMGN---DEIL 222 (268)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEcccccCCCCCCc-----ccccCHHHHHHHHHHHHcCCHHHHHhCCH---HHHH
Confidence 999999999999 789999999999999995432 22688999999999999999999999952 1256
Q ss_pred cCCCcCcHH--HHHHHHccCCCCCceEEe
Q 024528 220 AHPWPDHFY--PLHVAMGAAGENANAELI 246 (266)
Q Consensus 220 a~p~~~h~~--pl~~~lGa~~~~~~~~~~ 246 (266)
..+++|++. +|++++||+++. +.+++
T Consensus 223 ~~ag~~g~e~~~w~~~~GAl~~~-~~~v~ 250 (268)
T cd07367 223 DQAGNGGLEIVNWIMAAAAVEAQ-SGEKV 250 (268)
T ss_pred HhCcccchHHHHHHHHHhhcCCC-CccEE
Confidence 677889998 999999999764 35553
No 13
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=100.00 E-value=9.2e-47 Score=337.69 Aligned_cols=232 Identities=22% Similarity=0.302 Sum_probs=195.6
Q ss_pred CCCcceEEEEcCCCCCCCC---CC--C----chHHHHHHHHHHHhhcCCCCEEEEE-eCCCCC----CCCeEEeccCCCc
Q 024528 1 MSTVKNTFFISHGSPTLSI---DE--S----LPARHFLKAWKEQVFTQRPNSILVI-SGHWET----DVPTVNVVQQNDV 66 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~---~~--~----~~~~~~~~~l~~~i~~~~Pd~Ivvi-S~Hw~~----~~~~i~~~~~~~~ 66 (266)
|++|+.++++||. |.+.. .+ . .++.++++++++++++.+||+|||| |+|... ..|.|.++..++.
T Consensus 1 Ma~iv~a~~~sH~-P~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~ 79 (277)
T cd07364 1 MARIIAGVGTSHV-PAIGAAMDNGKTDEPYWKPLFKGYQPARDWIKKNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEF 79 (277)
T ss_pred CHHHHhhhcCCCC-ccccccccCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHhhcccCCCceEEeecccc
Confidence 9999999999998 87765 22 1 2677899999999999999999999 779643 3468888877777
Q ss_pred ccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCC--
Q 024528 67 IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTR-- 141 (266)
Q Consensus 67 ~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~-- 141 (266)
.+++++|...... +++||++||++|++.+.++||| ++...++++|||+||||+||+|+.+ +||||||+|..
T Consensus 80 ~~~~~~~g~~~~~---~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~ 155 (277)
T cd07364 80 QPADEGYGPRPVP---DVQGHPDLAWHIAQSLILDDFD-MTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQY 155 (277)
T ss_pred ccCccccCCCCCC---CCCCCHHHHHHHHHHHHHcCCC-EEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCC
Confidence 8777777532111 6899999999999999999996 8888889999999999999999754 78999999877
Q ss_pred --CChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcC
Q 024528 142 --KDGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKA 214 (266)
Q Consensus 142 --~~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~ 214 (266)
.++++||+||++|+++ +|+||+|||||+|||||..... + .++++||+|+++++++ |.++|++++. .
T Consensus 156 p~~~~~~~~~lG~al~~~i~~~~rd~rV~iIaSG~lSH~L~~~~~---g--~~~~eFD~~i~~~l~~-d~~~l~~~~~-~ 228 (277)
T cd07364 156 PQPTGKRCFALGKAIRRAVESYDEDLKVAIWGTGGMSHQLQGERA---G--LINKEFDNRFLDKLIS-DPEGLAKMPH-I 228 (277)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCc---c--CchHHHHHHHHHHHHh-CHHHHHcCCc-h
Confidence 6889999999999999 6899999999999999976532 2 3589999999999997 9999999953 5
Q ss_pred chhhhcCCCcCcHHHHHHHHccCCCCCceEE
Q 024528 215 PCAKKAHPWPDHFYPLHVAMGAAGENANAEL 245 (266)
Q Consensus 215 p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~~ 245 (266)
+....+|+...|+++|++++||+++ .+.+.
T Consensus 229 ~~~~~ag~~g~e~~~wi~~~GAl~~-~~~~~ 258 (277)
T cd07364 229 EYLREAGSEGIELVMWLIMRGALDE-QVREL 258 (277)
T ss_pred HHHHHcCccchhHHHHHHHHhhhcc-CCeEE
Confidence 7778889888899999999999976 34443
No 14
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=1.6e-46 Score=335.98 Aligned_cols=222 Identities=21% Similarity=0.319 Sum_probs=188.2
Q ss_pred CCCcceEEEEcCCCCCCCCCCC---c------hHHHHHHHHHHHhhcCCCCEEEEEe-CC----CCCCCCeEEeccCCCc
Q 024528 1 MSTVKNTFFISHGSPTLSIDES---L------PARHFLKAWKEQVFTQRPNSILVIS-GH----WETDVPTVNVVQQNDV 66 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~~~---~------~~~~~~~~l~~~i~~~~Pd~IvviS-~H----w~~~~~~i~~~~~~~~ 66 (266)
|++++.++++||- |.+...+. . ++.++++++++++++.+||+||||| || |.+..+.|+++..++.
T Consensus 1 M~~iv~a~~~sHv-P~ig~~~~~~~~~t~~~~~~~~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~ 79 (276)
T cd07949 1 MAKIIGGITTSHV-PAIGGAIAKGLQQTPYWKPFFDGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSY 79 (276)
T ss_pred ChHHHhhhcCCCC-CcccccccccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccc
Confidence 8999999999995 77653221 1 3368999999999999999999999 59 6666778888876666
Q ss_pred ccCC--CCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCC--CCCeEEEEecCCC
Q 024528 67 IYDF--YNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEA--NIPVCQLSVQTRK 142 (266)
Q Consensus 67 ~~Df--~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~--~iPvV~vs~~~~~ 142 (266)
.+|+ +|+|+ +|+++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+. ++||||||+|...
T Consensus 80 ~g~~~~~g~~~-----~~~~~g~~~LA~~i~~~~~~~g~d-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~ 153 (276)
T cd07949 80 RNADEGWGIPA-----LAPFKGDPELSWHLIESLVEDEFD-ITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQ 153 (276)
T ss_pred cCcccccCCCC-----CCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCC
Confidence 6663 46665 569999999999999999999995 888889999999999999999985 5999999999775
Q ss_pred ----ChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcch-h
Q 024528 143 ----DGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYE-Q 212 (266)
Q Consensus 143 ----~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~-~ 212 (266)
++++||+||++|+++ +|+||+|||||+|||||..... ..++++||+|+++.|+ +|.++|++++ +
T Consensus 154 ~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iiaSG~lSH~l~~~~~-----g~~~~~fD~~~~~~l~-~d~~~L~~~~~~ 227 (276)
T cd07949 154 HPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLSHQLDGERA-----GFINKDFDRYCLDKMV-DNPEWLTKYSIE 227 (276)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCc-----ccchHHHHHHHHHHHh-cCHHHHHcCCHH
Confidence 789999999999998 4679999999999999964321 2367999999999999 6999999996 3
Q ss_pred cCchhhhcCCCcCcHH--HHHHHHccCCC
Q 024528 213 KAPCAKKAHPWPDHFY--PLHVAMGAAGE 239 (266)
Q Consensus 213 ~~p~~~~a~p~~~h~~--pl~~~lGa~~~ 239 (266)
+ ....+++|++. +|++++||+++
T Consensus 228 ~----~~~~AG~~g~e~~~wi~~~GAl~~ 252 (276)
T cd07949 228 E----LVELAGTQGVEFLMWIAMRGALGD 252 (276)
T ss_pred H----HHHHcccccHHHHHHHHHHHhhcc
Confidence 4 56788899988 79999999975
No 15
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=1.8e-46 Score=336.07 Aligned_cols=242 Identities=20% Similarity=0.296 Sum_probs=195.4
Q ss_pred CCCcceEEEEcCCCCCCCCCC--C--------chHHHHHHHHHHHhhcCCCCEEEEE-eCCCCCC----CCeEEeccCCC
Q 024528 1 MSTVKNTFFISHGSPTLSIDE--S--------LPARHFLKAWKEQVFTQRPNSILVI-SGHWETD----VPTVNVVQQND 65 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~~--~--------~~~~~~~~~l~~~i~~~~Pd~Ivvi-S~Hw~~~----~~~i~~~~~~~ 65 (266)
|++|+.++.+|| ||++... . .++.++++++++++++.+||+|||| |+|+..+ .+.|+++...+
T Consensus 1 M~~Iv~a~~~sH--~P~i~~~~~~g~~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~ 78 (284)
T PRK13366 1 MARITASVYTSH--VPAIGAAIDLGKTGEPYWQPVFKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAE 78 (284)
T ss_pred CcceeEEeecCC--CCccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCce
Confidence 999999999999 4444432 1 2677899999999999999999999 8897543 45777776666
Q ss_pred cccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCCC
Q 024528 66 VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTRK 142 (266)
Q Consensus 66 ~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~~ 142 (266)
...++.+|.. .++. +++||++||++|++.+.++||| ++...++++|||+||||+||+|+.+ +||||||+|...
T Consensus 79 ~~~~~~~~g~--~~v~-~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~ 154 (284)
T PRK13366 79 YQPADEGWGP--RPVP-KVIGHPDLAAHIAQSVIQDDFD-LTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQ 154 (284)
T ss_pred ecCcccccCC--CCCC-CCCCCHHHHHHHHHHHHHCCCC-EeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCC
Confidence 6556555432 2344 7899999999999999999996 8878899999999999999999754 999999999886
Q ss_pred ----ChHHHHHHHHHhcccc-----CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528 143 ----DGTHHYNMGKALAPLK-----DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK 213 (266)
Q Consensus 143 ----~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~ 213 (266)
++++||+||++|++++ |+||+|||||+|||||..++. ++ .+++||+++++.+++ |.++|++++.+
T Consensus 155 ~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~~---g~--~~~~fD~~~l~~l~~-d~~~l~~l~~~ 228 (284)
T PRK13366 155 YPVPSGRRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPRA---GL--INREWDNAFLDRLIA-DPDGLSKMPHI 228 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCC---CC--CcHHHHHHHHHHHhc-CHHHHHcCCHH
Confidence 8899999999999994 689999999999999985432 22 279999999999976 99999999641
Q ss_pred CchhhhcCCCcC--cHHHHHHHHccCCC---CCceEEecceeeeceeeee
Q 024528 214 APCAKKAHPWPD--HFYPLHVAMGAAGE---NANAELIHTSWQLGTISYS 258 (266)
Q Consensus 214 ~p~~~~a~p~~~--h~~pl~~~lGa~~~---~~~~~~~~~~~~~~~~~~~ 258 (266)
.....+++| +.+.|++|+||.++ +.+.+.+|+.|... +|++
T Consensus 229 ---~~~~~AG~~G~e~~~Wi~~~gAl~~~~~~~~~~~~~~~~~~~-~~~~ 274 (284)
T PRK13366 229 ---DYVREAGSEGIELVMWLIARGAMSDVAGGPKPKVAHRFYHVP-ASNT 274 (284)
T ss_pred ---HHHHHcccchHHHHHHHHHHHhhhcccccCCceEeeeceecc-cccc
Confidence 155667777 45556999999865 45789999988654 4555
No 16
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=100.00 E-value=2.6e-46 Score=347.27 Aligned_cols=242 Identities=23% Similarity=0.306 Sum_probs=201.6
Q ss_pred CCcceEEEEcCCCCCCCC--CC--C-----chHHHHHHHHHHHhhcCCCCEEEEEeC-CCC----CCCCeEEeccCCCcc
Q 024528 2 STVKNTFFISHGSPTLSI--DE--S-----LPARHFLKAWKEQVFTQRPNSILVISG-HWE----TDVPTVNVVQQNDVI 67 (266)
Q Consensus 2 ~~~~~~~fisHg~P~~~~--~~--~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~----~~~~~i~~~~~~~~~ 67 (266)
++|+..+..||. |.+.. +. . .+..++++++++++++.+||+||||++ |.. ...++|+++...+..
T Consensus 149 A~Iv~g~~tSH~-P~ig~A~d~~~~~~~~~~~v~~~~~~~r~~l~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~ 227 (444)
T PRK13372 149 AQISAALFSSHV-PAIGAAIDLGKTEEDYWKKLFAGYDLSREWAKEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFP 227 (444)
T ss_pred cceeeeeccCcc-cccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEEccccC
Confidence 588999999997 86643 11 1 256688999999999999999999988 854 446778777655555
Q ss_pred -cCCCCCc-cccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCC---CCCeEEEEecCCC
Q 024528 68 -YDFYNFP-EQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEA---NIPVCQLSVQTRK 142 (266)
Q Consensus 68 -~Df~gfp-~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~---~iPvV~vs~~~~~ 142 (266)
+|+ |+. .. ..++||+++||++|++.|.++||| ++.+.++++|||+||||.+|+|+. +|||||||+|...
T Consensus 228 p~d~-g~G~~~----v~~~pG~peLA~~I~~~L~~~GfD-~a~~~erglDHG~~vPL~lm~P~ad~~~IPVVPvsvN~~~ 301 (444)
T PRK13372 228 PADE-GWGPRP----VPDVIGHPELAAHIAQSVIQDDFD-LTIVNEMDVDHGLTVPLSLMCGDPEAWPCPVIPFAVNVVQ 301 (444)
T ss_pred CCcc-cCCCCC----CCCCCCCHHHHHHHHHHHHhcCCC-hhhccCCCCCchhhhhHHHhCCcccCCCCCeEEEEecCCC
Confidence 675 332 21 138999999999999999999997 888899999999999999999985 5999999999884
Q ss_pred ----ChHHHHHHHHHhccccC------CCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchh
Q 024528 143 ----DGTHHYNMGKALAPLKD------EGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQ 212 (266)
Q Consensus 143 ----~~~~~~~lG~aL~~~~d------~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~ 212 (266)
++++||+||++|+++++ +||+|||||++||||...+. ..++++||+|+++.|++ |.++|.+|+
T Consensus 302 ~Plps~~R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~~~~-----g~in~eFD~~~ld~L~~-D~e~L~~~~- 374 (444)
T PRK13372 302 YPVPSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQGPRA-----GLINEEFDNAFLDHLIA-DPEAAAEIP- 374 (444)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCCCCC-----ccchHHHHHHHHHHHHh-CHHHHHcCc-
Confidence 89999999999999986 99999999999999976432 26899999999999997 999999995
Q ss_pred cCchhhhcCCCcCcHHHHHHHHccCCCCC---------------ceEEecceeeeceeeee
Q 024528 213 KAPCAKKAHPWPDHFYPLHVAMGAAGENA---------------NAELIHTSWQLGTISYS 258 (266)
Q Consensus 213 ~~p~~~~a~p~~~h~~pl~~~lGa~~~~~---------------~~~~~~~~~~~~~~~~~ 258 (266)
..+..+.+|++.+|++||++++||+++.. +.+.+|+.|... .|++
T Consensus 375 ~~~~~~~aG~~g~El~~Wiva~GAl~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p-~s~t 434 (444)
T PRK13372 375 HIDYVDEAGSEGIELVDWLIARGAMDDQAGGASPDAAADGATGRPPKVNHRFYHVP-ASNT 434 (444)
T ss_pred ccHHHHHcCCchHHHHHHHHHHhhhhccccccccccccccccccccceeecceecc-cccc
Confidence 57999999999999999999999997633 247899988654 4444
No 17
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=100.00 E-value=1.7e-45 Score=329.46 Aligned_cols=230 Identities=22% Similarity=0.300 Sum_probs=184.3
Q ss_pred CcceEEEEcCCCCCCCCCCC--------chHHHHHHHHHHHhhcCCCCEEEEEeCC-----CCCCCCeEEeccCCCcccC
Q 024528 3 TVKNTFFISHGSPTLSIDES--------LPARHFLKAWKEQVFTQRPNSILVISGH-----WETDVPTVNVVQQNDVIYD 69 (266)
Q Consensus 3 ~~~~~~fisHg~P~~~~~~~--------~~~~~~~~~l~~~i~~~~Pd~IvviS~H-----w~~~~~~i~~~~~~~~~~D 69 (266)
+|+.++++|| ||+++++. .++.++|+++++++++.+||+||||||| |++..+.++++.......+
T Consensus 1 ~iv~~~~~~H--~P~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~~ 78 (271)
T cd07359 1 KIVLGIGASH--APGLTGAADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEGP 78 (271)
T ss_pred CeEEEEecCC--CCcccCCCCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccCC
Confidence 5788899999 44443321 2667899999999998999999999994 4444444444332222222
Q ss_pred CCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCC----ChH
Q 024528 70 FYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK----DGT 145 (266)
Q Consensus 70 f~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~----~~~ 145 (266)
+.+| .|...|+++||++||++|.+.+.+.|++ ++.+.++++|||+||||+||+|+.++||||||+|... +++
T Consensus 79 ~~~~---~~~~~~~~~~d~elA~~i~~~~~~~g~~-~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~~ 154 (271)
T cd07359 79 DEGW---LGIPRAPVPGDADLARHLLAGLVEDGFD-VAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSLR 154 (271)
T ss_pred cccc---ccCcCCCCCCCHHHHHHHHHHHHHcCCC-eeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCHH
Confidence 2222 4667889999999999999999999995 8888889999999999999999999999999998754 789
Q ss_pred HHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhc
Q 024528 146 HHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKA 220 (266)
Q Consensus 146 ~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a 220 (266)
+|++||++|+++ +|+||+|||||++|||+..... .+++++||++++++|+++|.++|+++. ..+....+
T Consensus 155 ~~~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~~-----g~~~~~fD~~~~~~l~~~d~~~l~~~~-~~~~~~~a 228 (271)
T cd07359 155 RCYALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPRH-----GEINEEFDREFLDLLERGDLEALLKAT-TEETLEEA 228 (271)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCccc-----cccCHHHHHHHHHHHHhCCHHHHHhcC-HHHHHHHc
Confidence 999999999997 5789999999999999976432 257899999999999999999999884 34555667
Q ss_pred CCCcCcHHHHHHHHccCCCCCceEE
Q 024528 221 HPWPDHFYPLHVAMGAAGENANAEL 245 (266)
Q Consensus 221 ~p~~~h~~pl~~~lGa~~~~~~~~~ 245 (266)
++...||+||++++||+++.. ++.
T Consensus 229 g~~~~e~~~~~~~~GA~~~~~-~~~ 252 (271)
T cd07359 229 GNGGHEILNWIAAAGALGEAP-GEV 252 (271)
T ss_pred CCCcHHHHHHHHHHHhhccCc-cce
Confidence 776666999999999987643 444
No 18
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=1.2e-45 Score=331.01 Aligned_cols=230 Identities=19% Similarity=0.220 Sum_probs=185.7
Q ss_pred CCCcceEEEEcCCCCCCCC--CCC------chHHHHHHHHHHHhhcCCCCEEEEEe-CCCCCC----CCeEEeccCCCcc
Q 024528 1 MSTVKNTFFISHGSPTLSI--DES------LPARHFLKAWKEQVFTQRPNSILVIS-GHWETD----VPTVNVVQQNDVI 67 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~--~~~------~~~~~~~~~l~~~i~~~~Pd~IvviS-~Hw~~~----~~~i~~~~~~~~~ 67 (266)
|++|+.++++|| ||+++ ++. .++.++++++++++++.+||+||||| +||..+ .+++.++... ..
T Consensus 1 M~~iv~a~~~sH--~P~i~~~~~~~~~~~~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~~-~~ 77 (277)
T cd07368 1 MGKIVGGFMMPH--DPVMFVTPTAPPAAQREICWHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTGD-VD 77 (277)
T ss_pred CcceeEEeecCC--CccccCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEeccc-cc
Confidence 999999999999 55543 331 36678999999999999999999998 588654 3555666544 46
Q ss_pred cCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-----CCCCeEEEEecCC-
Q 024528 68 YDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-----ANIPVCQLSVQTR- 141 (266)
Q Consensus 68 ~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-----~~iPvV~vs~~~~- 141 (266)
+||..||... +..++|+++||++|++.+.++||| ++.+.++++|||+||||+||+|+ .++|+|||++|.+
T Consensus 78 g~~~~~~~~~---~~~~~g~~eLA~~i~~~l~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~ 153 (277)
T cd07368 78 GPYDPLPGLP---RAVIENNEPLAHHIMQHGLEYGID-WAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGV 153 (277)
T ss_pred CCccccCCCC---cccCcCCHHHHHHHHHHHHHcCCC-EeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEeccc
Confidence 6665554421 246899999999999999999995 77888999999999999999985 4888999988654
Q ss_pred ---CChHHHHHHHHHhcc-----ccCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528 142 ---KDGTHHYNMGKALAP-----LKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK 213 (266)
Q Consensus 142 ---~~~~~~~~lG~aL~~-----~~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~ 213 (266)
.++++||+||++|++ .+|+||+|||||+|||||+.... .+++++||+|+++++++||.++|+++..+
T Consensus 154 ~p~~~~~~~~~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~~-----~~~~~~fD~~~~~~l~~gd~~~L~~~~~~ 228 (277)
T cd07368 154 DPFITSWRAHELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAEM-----GAVNEGFDREIMKLVAQGDLAALIALSDE 228 (277)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCccc-----cccCHHHHHHHHHHHHcCCHHHHHhCCHH
Confidence 567999999999999 56899999999999999966432 37889999999999999999999999522
Q ss_pred CchhhhcCCCcCc--HHHHHHHHccCCCCCceEEe
Q 024528 214 APCAKKAHPWPDH--FYPLHVAMGAAGENANAELI 246 (266)
Q Consensus 214 ~p~~~~a~p~~~h--~~pl~~~lGa~~~~~~~~~~ 246 (266)
.....+++|+ +++|++++||.++. +.+++
T Consensus 229 ---~~~~~aG~gg~e~~~~~~~~Gal~~~-~~~vl 259 (277)
T cd07368 229 ---EILEDGGNGGMEIRNWACAMGALPAA-RGEVI 259 (277)
T ss_pred ---HHHHHcccccHHHHHHHHHHHhcCCC-CccEE
Confidence 1444555666 99999999999754 55654
No 19
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=100.00 E-value=2.2e-45 Score=331.15 Aligned_cols=237 Identities=18% Similarity=0.218 Sum_probs=191.5
Q ss_pred CCcceEEEEcCCCCCCCCCC----C--------chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccC
Q 024528 2 STVKNTFFISHGSPTLSIDE----S--------LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYD 69 (266)
Q Consensus 2 ~~~~~~~fisHg~P~~~~~~----~--------~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~D 69 (266)
++|+.++.+||. |++.+.+ . .++.++++++++++++.+||+||||||||.++.. ..+...++..+|
T Consensus 1 g~iv~a~~~pH~-p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~ 78 (294)
T cd07372 1 GEIISGFLAPHP-PHLVYGENPPQNEPRSQGGWEQLRWAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGR 78 (294)
T ss_pred CeeEEEEecCCC-CeeecccCCcccccccchhHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCccccc
Confidence 578999999995 6665432 1 1366899999999999999999999999998764 223334566777
Q ss_pred CCCC--ccccccccCCCCCCHHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhccCCCCCeEEEEecC-----
Q 024528 70 FYNF--PEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT----- 140 (266)
Q Consensus 70 f~gf--p~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~----- 140 (266)
|.+| | ++|+++|+++||++||++|++.++++||+ +. .+.++++|||+||||+||+|+.++|||+||+|.
T Consensus 79 ~~~~~~p-~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~-~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~ 156 (294)
T cd07372 79 SVDPIFP-NLFRYDFSMNVDVELAEACCEEGRKAGLV-TKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYL 156 (294)
T ss_pred ccccccc-cceeeccCCCCCHHHHHHHHHHHHHCCCC-eeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccc
Confidence 7764 5 57888999999999999999999999995 64 367899999999999999999999999999864
Q ss_pred --CCChHHHHHHHHHhccc-c--CCCeEEEEecCCccccccccCCC-CCc---ch---hHHHHHHHHHHHHHcCCHhHHh
Q 024528 141 --RKDGTHHYNMGKALAPL-K--DEGVLIIGSGSATHNLRALQFDG-DSV---AS---WASEFDNWLKDALLQGRYEDVN 208 (266)
Q Consensus 141 --~~~~~~~~~lG~aL~~~-~--d~~v~iiaSG~lSH~l~~~~~~~-~~~---~~---~~~eFD~~v~~~l~~gd~~~l~ 208 (266)
..+++++|+||++|+++ + ++||+|||||+|||+|....+++ .++ ++ .+++||+.+++++++||.++|+
T Consensus 157 ~~~~~~~~~~~lG~ai~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~l~~gd~~~l~ 236 (294)
T cd07372 157 NTKEGLGEMDVLGKATREAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIELMRQGRMKEVF 236 (294)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 24479999999999995 3 58899999999999984333321 112 22 7899999999999999999999
Q ss_pred cchhcCchhhhcCC-CcCcHHHHHHHHccCCCCC-ceEEe
Q 024528 209 HYEQKAPCAKKAHP-WPDHFYPLHVAMGAAGENA-NAELI 246 (266)
Q Consensus 209 ~~~~~~p~~~~a~p-~~~h~~pl~~~lGa~~~~~-~~~~~ 246 (266)
++..+ ...++ ++|++.++.+++||+++.. +++++
T Consensus 237 ~~~~~----~~~~A~ge~g~~~~~~~~ga~~~~~~~~~vl 272 (294)
T cd07372 237 RLLPQ----FIEEAFAEVKSGAFTWMHAAMQYPELAAELH 272 (294)
T ss_pred hcCHH----HHHHhccccchHHHHHHHHhhcCCCcCceEe
Confidence 99654 45555 7999999999999997543 45544
No 20
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=1.4e-44 Score=323.22 Aligned_cols=227 Identities=22% Similarity=0.295 Sum_probs=190.8
Q ss_pred CCCcceEEEEcCCCCCCCCCC------C---chHHHHHHHHHHHhhcCCCCEEEEEe-CCCCC----CCCeEEeccCCCc
Q 024528 1 MSTVKNTFFISHGSPTLSIDE------S---LPARHFLKAWKEQVFTQRPNSILVIS-GHWET----DVPTVNVVQQNDV 66 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~~------~---~~~~~~~~~l~~~i~~~~Pd~IvviS-~Hw~~----~~~~i~~~~~~~~ 66 (266)
|++++.++++||- |.+.-.+ + .+..++++++++++++.+||+||||| ||... ..+.|+++...+.
T Consensus 1 M~~iv~~~~~sH~-P~vg~~~~~~~~~~~~~~~v~~a~~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~ 79 (278)
T PRK13364 1 MAKIIGGITTSHV-PAIGGAIAKGLQQDPYWKPFFDGFPPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEY 79 (278)
T ss_pred ChhhhceeecCCC-CccccccccccccChhHHHHHHHHHHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCcee
Confidence 8999999999995 7664111 1 23478999999999999999999999 79654 4568888887888
Q ss_pred ccCCCCC--ccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC--CCeEEEEecCCC
Q 024528 67 IYDFYNF--PEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN--IPVCQLSVQTRK 142 (266)
Q Consensus 67 ~~Df~gf--p~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~--iPvV~vs~~~~~ 142 (266)
.+|+.+| |.. .+++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.+ +|||||++|+..
T Consensus 80 ~g~~~~~g~~~~-----~~~~~~~~lA~~i~~~l~~~gid-~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~ 153 (278)
T PRK13364 80 SNADEGWGIPTL-----APFKGDTELSWHIIESLVEEEFD-ITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQ 153 (278)
T ss_pred cCChhhcCCCCC-----CCCCCCHHHHHHHHHHHHHcCCC-eecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccC
Confidence 8886554 332 48899999999999999999996 8888899999999999999999876 889999998876
Q ss_pred ----ChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcch-h
Q 024528 143 ----DGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYE-Q 212 (266)
Q Consensus 143 ----~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~-~ 212 (266)
++++||+||++|+++ +|+||+|||||+|||||. ..++ ++. +++||+++++++++ |.++|++++ +
T Consensus 154 ~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~-~~p~--G~~--~~~fD~~~l~~l~~-d~~~l~~~~~~ 227 (278)
T PRK13364 154 HPLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSHQLD-GERA--GFI--NKDFDLQCMDSLVS-DPEWLTQYSNH 227 (278)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCC-CCCc--ccC--CHHHHHHHHHHHHh-CHHHHHcCCHH
Confidence 789999999999999 579999999999999997 3333 333 49999999999998 999999996 3
Q ss_pred cCchhhhcCCCcCcH--HHHHHHHccCCCCCceEE
Q 024528 213 KAPCAKKAHPWPDHF--YPLHVAMGAAGENANAEL 245 (266)
Q Consensus 213 ~~p~~~~a~p~~~h~--~pl~~~lGa~~~~~~~~~ 245 (266)
+ ....+++|++ ++|++|+||.++ .+.+.
T Consensus 228 e----~~~~AG~~g~Eir~wi~~~gAl~~-~~~~~ 257 (278)
T PRK13364 228 E----LVELAGTQGVELLNWLAMRGALGG-KVREV 257 (278)
T ss_pred H----HHHHcccccHHHHHHHHHHHhhcC-CceEE
Confidence 4 6778889988 999999999976 34443
No 21
>PRK03881 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=344.63 Aligned_cols=248 Identities=19% Similarity=0.300 Sum_probs=210.1
Q ss_pred cceEEEEcCCCCCCCCCCC--------chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCcc
Q 024528 4 VKNTFFISHGSPTLSIDES--------LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPE 75 (266)
Q Consensus 4 ~~~~~fisHg~P~~~~~~~--------~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~ 75 (266)
|+.++++||+ |+++++. .++.++++++++++.+.+||+||||||||......+.+...+...+||++|+.
T Consensus 3 i~~a~~~PH~--P~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~ 80 (467)
T PRK03881 3 IVGAYLMPHP--PIIVPEVGRGEEKKIQATIDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGA 80 (467)
T ss_pred eEEEEEcCCC--CEeecCCCCCchhhHHHHHHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCC
Confidence 7889999995 5666531 36778999999999888999999999999987888888888889999999974
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhCCCCcccc---------cCCCCccccchhhhhhhccC-CCCCeEEEEecCCCChH
Q 024528 76 QMYKLKYPAPGAPELAKRVKQLLTESGFNHVNE---------DTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRKDGT 145 (266)
Q Consensus 76 ~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~---------~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~~~~ 145 (266)
|+++|+++||++||++|++.++++||+ +.. +.++++|||+||||.||+|. .++|||||++ ...+++
T Consensus 81 --~~v~~~~~~d~eLA~~i~~~~~~~g~~-~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~d~pVVpis~-~~~~~~ 156 (467)
T PRK03881 81 --PEVSFSFKNDLELVEEIAEEAKKEGIP-VVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHISY-GGLSPE 156 (467)
T ss_pred --CCccccCCCCHHHHHHHHHHHHHcCCc-eEeecccccccccCCCCCCceEEeehhhhccccCCCCEEEEeC-CCCCHH
Confidence 789999999999999999999999995 664 57789999999999999998 7999999999 468999
Q ss_pred HHHHHHHHhcccc---CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCC
Q 024528 146 HHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHP 222 (266)
Q Consensus 146 ~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p 222 (266)
++++||++|++++ ++||+|||||++||++....++ ++.+++++||++++++|+++|.++|+++..+ ...++
T Consensus 157 ~~~~lG~aL~~~~~~~~~rvliIaSGdLSH~l~~~~p~--g~~~~a~~fD~~ii~~i~~gD~~~L~~~~~~----~~~~a 230 (467)
T PRK03881 157 ELYKFGMAIREAAEELGRKVVLIASGDLSHRLTPDGPY--GYAPEGPEFDRAIVELLSKGDVEGLLSIDEE----LIEEA 230 (467)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCcccccCCCCCCC--CCCcchHHHHHHHHHHHHcCCHHHHHhcCHH----HHHhh
Confidence 9999999999986 4599999999999999665432 4678999999999999999999999998533 45777
Q ss_pred CcCcHHHHHHHHccCCCC-CceEEecceeeeceeeeeEEEEcc
Q 024528 223 WPDHFYPLHVAMGAAGEN-ANAELIHTSWQLGTISYSSYKFTA 264 (266)
Q Consensus 223 ~~~h~~pl~~~lGa~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 264 (266)
+.|||+|+++++|++.+. .+++.++-.-..| .+|.++.|..
T Consensus 231 ~~cG~~p~~~~lga~~~~~~~~~~l~Y~~~~g-VGYa~~~f~~ 272 (467)
T PRK03881 231 GECGLRSVLIMLGALDGYSVKSEVLSYEGPFG-VGYGVARFEP 272 (467)
T ss_pred hhcCHHHHHHHHHhccccCCCceEEEEeCCcc-cceEEEEEec
Confidence 899999999999998753 2566654222233 7888888853
No 22
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=2.3e-43 Score=315.46 Aligned_cols=227 Identities=22% Similarity=0.310 Sum_probs=188.0
Q ss_pred CCCcceEEEEcCCCCCCCC-CC---CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C--CeEEeccCCCcccC
Q 024528 1 MSTVKNTFFISHGSPTLSI-DE---SLPARHFLKAWKEQVFTQRPNSILVISGHWETD-----V--PTVNVVQQNDVIYD 69 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~-~~---~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-----~--~~i~~~~~~~~~~D 69 (266)
|++|+.++++|| +.+.- ++ ..++.++++++++++.+.+||+||||||||.+. . .+|..+..+...+|
T Consensus 1 m~~i~~~~~~pH--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~gd 78 (269)
T PRK13358 1 MGKIVGAFATSH--VLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYGD 78 (269)
T ss_pred Chhhheehcccc--cccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCccc
Confidence 999999999999 43321 11 137789999999999888999999999998743 2 34555666677899
Q ss_pred CCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCCh----H
Q 024528 70 FYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDG----T 145 (266)
Q Consensus 70 f~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~----~ 145 (266)
| |||++ .++||++||++|.+.+.+.|+| ++.+.++++|||+|+||++|+|+.++||||||+|+..+| +
T Consensus 79 ~-g~~~~------~~~g~~~LA~~l~~~~~~~~~~-~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~ 150 (269)
T PRK13358 79 M-DIPRE------LVPGHRAFAQAIALHRAADGFD-LAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAK 150 (269)
T ss_pred c-CCCcc------cCCCCHHHHHHHHHHHHHcCCC-eeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHH
Confidence 8 99986 4799999999999999999995 777788999999999999999999999999999876554 9
Q ss_pred HHHHHHHHhcccc------CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhh
Q 024528 146 HHYNMGKALAPLK------DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKK 219 (266)
Q Consensus 146 ~~~~lG~aL~~~~------d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~ 219 (266)
++++||++|++++ ++||+|||||++||++.... +.+++++||+|++++++++|.++|.++.+. ...
T Consensus 151 ~~~~lG~al~~~~~~~~~~~~rvlvIaSGdlSH~l~~~~-----~~~~~~~fD~~~~~~i~~~D~~~l~~~~~~---~~~ 222 (269)
T PRK13358 151 RCAALGEVIRQAVEKDRPADERVAVIGTGGLSHWLGVPE-----HGEVNEDFDRMVMDALVSGDLEALVALGNE---EIL 222 (269)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEecCCccCCCCCcc-----ccccHHHHHHHHHHHHHcCCHHHHHhcCHH---HHH
Confidence 9999999999974 57999999999999986432 247899999999999999999999988532 123
Q ss_pred cCCCcCcH--HHHHHHHccCCCCCceEEe
Q 024528 220 AHPWPDHF--YPLHVAMGAAGENANAELI 246 (266)
Q Consensus 220 a~p~~~h~--~pl~~~lGa~~~~~~~~~~ 246 (266)
...++|.+ ++|++++|+.++ .+++++
T Consensus 223 ~~~G~g~~~~~~~~~~~ga~~g-~~~~~l 250 (269)
T PRK13358 223 EQGGNGGLEIRNWIMAAAAVPG-RRGEKI 250 (269)
T ss_pred HhcCcccHHHHHHHHHHhhcCC-CccceE
Confidence 44667777 899999999876 366654
No 23
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=3.6e-43 Score=319.97 Aligned_cols=235 Identities=18% Similarity=0.243 Sum_probs=190.0
Q ss_pred CCCcceEEEEcCCCCCCCC--CCC------chHHHHHHHHHHHhhcCCCCEEEEE-eCCCCC----CCCeEEeccCCCcc
Q 024528 1 MSTVKNTFFISHGSPTLSI--DES------LPARHFLKAWKEQVFTQRPNSILVI-SGHWET----DVPTVNVVQQNDVI 67 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~--~~~------~~~~~~~~~l~~~i~~~~Pd~Ivvi-S~Hw~~----~~~~i~~~~~~~~~ 67 (266)
|++++.++++|| ||+++ ++. .++.++++++++++++.+||+|||| |+||.. +.+.|+++..++..
T Consensus 1 Ma~iv~a~~~sH--~P~i~~~p~~~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~ 78 (329)
T cd07369 1 MAKIVAAIGMSH--APGALGWPDAPSPDVRARTEEATLKLGRTLTAARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHS 78 (329)
T ss_pred ChHHheeeecCC--CccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchhhhccccCccEEEeecceee
Confidence 999999999999 55544 331 3778999999999999999999997 889973 44677777666666
Q ss_pred cCCC----CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCC--
Q 024528 68 YDFY----NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR-- 141 (266)
Q Consensus 68 ~Df~----gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~-- 141 (266)
+||. +|+- ..+++++||++||++|++.+.++||| ++.+.++++|||++|||++|+|+.++|||||++|+.
T Consensus 79 G~~~~~~~~~~~---~~~~~~~gd~eLA~~I~~~l~~~G~d-va~~~~~~~DHG~~vPL~~l~p~~~ipvVpI~in~~~~ 154 (329)
T cd07369 79 GPADQLMEALRV---PKKHYFPGNPEVAEQLLRALVHDSFD-CARMGEIEYGNNLLVPWKLMKPDLDVSVIPIYTNVFSP 154 (329)
T ss_pred ccchhccccCCC---CcccCCCCCHHHHHHHHHHHHHCCCC-eeecCCcCCCccceeeHHHhcCCCCCcEEEEEEeccCC
Confidence 6744 2321 12579999999999999999999996 887888999999999999999999999999999987
Q ss_pred --CChHHHHHHHHHhcccc-----CCCeEEEEecCCcc-----------------ccccccCCCCC--------------
Q 024528 142 --KDGTHHYNMGKALAPLK-----DEGVLIIGSGSATH-----------------NLRALQFDGDS-------------- 183 (266)
Q Consensus 142 --~~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH-----------------~l~~~~~~~~~-------------- 183 (266)
+++++||+||++|++++ |+||+|||||+||| +|.+..++|-+
T Consensus 155 p~~~~~r~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 234 (329)
T cd07369 155 PLMKYSRAYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPNQPETDPFLQRMKEYQTYGKPVLEKDPNLFVDLAA 234 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCccccccchhhhhhhhhccccCcCCcCcchhhhhhhhhhhh
Confidence 78899999999999986 48999999999999 44444443210
Q ss_pred ---------------cch-hHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHH--HHHHHccCCCCCceEE
Q 024528 184 ---------------VAS-WASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYP--LHVAMGAAGENANAEL 245 (266)
Q Consensus 184 ---------------~~~-~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~p--l~~~lGa~~~~~~~~~ 245 (266)
-++ .+++||+++++++++||.++|.+++.+ ...+.++.|++.. |++++||+++. +.++
T Consensus 235 ~~~~~~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd~~~l~~~~~~---~~~~~aG~~g~e~~~wi~~~gAl~~~-~~~~ 310 (329)
T cd07369 235 YEIEMAKKNQWPLNSKHPLVNAAWDRKFLKAYCRGDSEWLKNLTYE---EVEEEGGHGGHEILNWVAVMGAMDGK-KAKL 310 (329)
T ss_pred hhhhhhhhhcccccccCCccCHHHHHHHHHHHHcCCHHHHHcCCHH---HHHHHcccchHHHHHHHHHHHhcCCC-Ccce
Confidence 055 599999999999999999999999622 1455666676655 99999999654 4554
No 24
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=100.00 E-value=7.8e-43 Score=323.86 Aligned_cols=238 Identities=21% Similarity=0.301 Sum_probs=191.7
Q ss_pred CCCcceEEEEcCCCCCCCCC----CC-----chHHHHHHHHHHHhhcCCCCEEEEEeC-CCC----CCCCeEEeccC-CC
Q 024528 1 MSTVKNTFFISHGSPTLSID----ES-----LPARHFLKAWKEQVFTQRPNSILVISG-HWE----TDVPTVNVVQQ-ND 65 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~----~~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~----~~~~~i~~~~~-~~ 65 (266)
|++|+.++++||. |.+... +. .+..++++++++++++.+||+||||++ |.. ...++|+++.. .-
T Consensus 1 Ma~iv~g~~~SH~-P~ig~a~~~~~~~~~~~~~v~~~~~~~r~~l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~ 79 (420)
T PRK13367 1 MARIIGGIAVSHT-PTIGFAVDHNKQQDPAWAPIFESFAPLRRWLEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQY 79 (420)
T ss_pred ChHHHhhhcCCCC-cccccccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhcCcccCCCeEEEecccc
Confidence 9999999999997 876442 11 156688999999999999999999988 854 34577666542 23
Q ss_pred cccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCC-
Q 024528 66 VIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTR- 141 (266)
Q Consensus 66 ~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~- 141 (266)
..|||+|||+++| +++|+++||++|++.+.++||| ++.+.++++|||+||||++|+|+.+ +|||||++|..
T Consensus 80 ~~~D~~g~P~~ly----~~~G~peLA~~I~~~L~~~gfD-~a~~~~~~lDHG~~VPL~~l~p~ad~~P~~VVPi~invvq 154 (420)
T PRK13367 80 AVADEGGGPRDLP----PVRGHAALSRHIGASLMADEFD-MSFFQDKPLDHGLFSPLSALLPHDDGWPVQVVPLQVGVLQ 154 (420)
T ss_pred cccccCCCccccC----CCCCCHHHHHHHHHHHHhcCCC-eecccCCCCCcchhhhHHHhCCccccCCCceeeeeeceee
Confidence 4799999999885 9999999999999999999997 8889999999999999999999865 77999998864
Q ss_pred ---CChHHHHHHHHHhcccc-----CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528 142 ---KDGTHHYNMGKALAPLK-----DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK 213 (266)
Q Consensus 142 ---~~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~ 213 (266)
.++++||+||++|++++ |+||+|||||+|||||..... ++ .+++||++++++|++ |.++|.++..
T Consensus 155 ~Plps~~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~~~---g~--~n~~wD~~Fld~L~~-d~e~L~~~~~- 227 (420)
T PRK13367 155 FPIPSARRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGERC---GF--NNPEWDAQFLDLLVN-DPERLTEMTL- 227 (420)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCC---CC--CCHHHHHHHHHHHHh-CHHHHHcCCH-
Confidence 26899999999999996 689999999999999965432 22 237899999999996 9999999953
Q ss_pred CchhhhcCCCcCcHHHHHHHHccCCCCCceEEecceeeec
Q 024528 214 APCAKKAHPWPDHFYPLHVAMGAAGENANAELIHTSWQLG 253 (266)
Q Consensus 214 ~p~~~~a~p~~~h~~pl~~~lGa~~~~~~~~~~~~~~~~~ 253 (266)
......+..+.-+++.|++|.||+++ +.+..+..|+..
T Consensus 228 ~e~~~~aG~~g~Ei~~Wl~a~GAL~~--~~~~~~~~Yy~P 265 (420)
T PRK13367 228 AEYATLGGMEGAEVIMWLIMRGALSA--NVECLHRDYYLP 265 (420)
T ss_pred HHHHHHcCCchHHHHHHHHHHhhhcc--CCeeeeeeeeec
Confidence 23344445445579999999999975 335555556544
No 25
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=100.00 E-value=8.6e-43 Score=312.22 Aligned_cols=226 Identities=20% Similarity=0.294 Sum_probs=181.4
Q ss_pred CCCcceEEEEcCCCCCCCCCCC---------chHHHHHHHHHHHhhcCCCCEEEEEe-CCCCC----CCCeEEeccCCCc
Q 024528 1 MSTVKNTFFISHGSPTLSIDES---------LPARHFLKAWKEQVFTQRPNSILVIS-GHWET----DVPTVNVVQQNDV 66 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~~~---------~~~~~~~~~l~~~i~~~~Pd~IvviS-~Hw~~----~~~~i~~~~~~~~ 66 (266)
|++++.++++||- |.+...+. .++.++++++++++++.+||+||||| +|... ..+.|+++...+.
T Consensus 1 M~~iv~a~~~sH~-P~ig~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~ 79 (277)
T cd07950 1 MAKIIGGIGSSHT-PTIGFAYDKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSY 79 (277)
T ss_pred ChHHhhhhhcCCC-CccCcccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEecccc
Confidence 8999999999994 44433221 36789999999999999999999999 56433 3456776654444
Q ss_pred -ccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCC-
Q 024528 67 -IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTR- 141 (266)
Q Consensus 67 -~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~- 141 (266)
.+||.++|+.. ++++||++||++|++.+.++||| ++.+.++++|||+||||+||+|+.+ +|||||++|..
T Consensus 80 ~~~d~~~~~~~~----~~~~g~~~LA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~ 154 (277)
T cd07950 80 EVADEGGGPRDL----PPIRGHAALAQHIAESLVADEFD-LTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQ 154 (277)
T ss_pred cccccccCCccC----CCCCCCHHHHHHHHHHHHhcCCC-eeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeEe
Confidence 66777778765 48999999999999999999996 8888899999999999999999866 88999998763
Q ss_pred --C-ChHHHHHHHHHhccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528 142 --K-DGTHHYNMGKALAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK 213 (266)
Q Consensus 142 --~-~~~~~~~lG~aL~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~ 213 (266)
+ ++++||+||++|+++ +|+||+|||||+|||||... ++ ++.+ ++||++++++|++ |.++|+++..+
T Consensus 155 ~~l~~~~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~~~-~~--g~~~--~~~D~~f~~~l~~-d~~~l~~~~~~ 228 (277)
T cd07950 155 FPLPTARRCYKLGQALRRAIESYPEDLKVAVVGTGGLSHQVHGE-RA--GFNN--TEWDMEFLDLIEN-DPESLAAMTHA 228 (277)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEcCccccCCCCC-CC--CCCC--HHHHHHHHHHHHh-CHHHHHcCCHH
Confidence 3 789999999999999 67899999999999999743 22 2333 8899999999996 99999999643
Q ss_pred CchhhhcCCCcCcHHHHHHHHccCCC
Q 024528 214 APCAKKAHPWPDHFYPLHVAMGAAGE 239 (266)
Q Consensus 214 ~p~~~~a~p~~~h~~pl~~~lGa~~~ 239 (266)
-....++.+.-+.+.|++++||+++
T Consensus 229 -~~~~~aG~~~~E~~~wi~~~gal~~ 253 (277)
T cd07950 229 -DYATLGGAEGAEVIMWLIMRGALSD 253 (277)
T ss_pred -HHHHHcCcchHHHHHHHHHHHhhcC
Confidence 1113344444578889999999875
No 26
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=100.00 E-value=3.8e-42 Score=305.39 Aligned_cols=229 Identities=21% Similarity=0.274 Sum_probs=192.6
Q ss_pred EEcCCCCCCCCCC--------CchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccc
Q 024528 9 FISHGSPTLSIDE--------SLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKL 80 (266)
Q Consensus 9 fisHg~P~~~~~~--------~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~ 80 (266)
++||+ | +++++ ..++.++++++++++.+.+||+||||||||.+....|+++..++..+||+||+ .|++
T Consensus 1 ~~ph~-p-~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~--~~~~ 76 (256)
T cd07951 1 LVPHP-P-LLVPEVGGGEEAEIAATRAACEAAARRLAAARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFG--APEV 76 (256)
T ss_pred CCCCC-C-cccccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccceeEeccCCceecchhhcC--CCcc
Confidence 47994 4 44432 13677889999999988899999999999999888999998889999999997 4889
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCcccccCC--CCccccchhhhhhhccC-CCCCeEEEEecCCCChHHHHHHHHHhccc
Q 024528 81 KYPAPGAPELAKRVKQLLTESGFNHVNEDTK--RGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRKDGTHHYNMGKALAPL 157 (266)
Q Consensus 81 ~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~--~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~~~ 157 (266)
+|++++|++||++|.+.++++|++ +..... +++|||+||||.||+|. .++|||||+++ ..+++++++||++|+++
T Consensus 77 ~~~~~~d~~la~~l~~~l~~~g~~-~~~~~~~~~~~DHg~~vpl~~l~~~~~~~pvVpi~~~-~~~~~~~~~lG~aL~~~ 154 (256)
T cd07951 77 SFGVDLDLELVEEIAGEADKEGLP-VGALGERIPELDHGTLVPLYFLRKAGSDGKLVRIGLS-GLSPEELYAFGRALAAA 154 (256)
T ss_pred eEeeeCCHHHHHHHHHHhhhcCCC-cccccCCCCCCCchhhhhHHhhcccCCcCCeEEEecC-CCCHHHHHHHHHHHHHH
Confidence 999999999999999999999995 665444 69999999999999998 79999999995 57999999999999998
Q ss_pred ---cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHH
Q 024528 158 ---KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAM 234 (266)
Q Consensus 158 ---~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~l 234 (266)
+++||+||+||++|||+....++ +..+++.+||++++++|+++|.++|+++... ..+..+.|++.|+.+++
T Consensus 155 ~~~~~~~vlii~SgdlsH~l~~~~p~--~~~~~a~~~D~~~~~~l~~~D~~~L~~~~~~----~~~~~~~~G~~~~~~l~ 228 (256)
T cd07951 155 AEELGRRVALIASGDLSHRLTEDAPG--GYDPRGPEFDAAIAEALAKGDVDALLALDPE----LAEEAGECGRRSWQVLA 228 (256)
T ss_pred HHhcCCcEEEEEecccccccCCCCCC--CCCcchHHHHHHHHHHHHcCCHHHHHhcCHH----HHHHHHhcChHHHHHHH
Confidence 47899999999999999765432 3457899999999999999999999998532 23344679999999999
Q ss_pred ccCCCC-CceEEecce
Q 024528 235 GAAGEN-ANAELIHTS 249 (266)
Q Consensus 235 Ga~~~~-~~~~~~~~~ 249 (266)
|++... .+++.+.-.
T Consensus 229 ~~~~~~~~~~~~l~y~ 244 (256)
T cd07951 229 GALDGASVKGEVLSYE 244 (256)
T ss_pred HhccCCCccceeeecc
Confidence 998643 356665433
No 27
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=2e-41 Score=303.49 Aligned_cols=226 Identities=18% Similarity=0.246 Sum_probs=178.3
Q ss_pred CCCcceEEEEcCCCCCCCCCC-----C----chHHHHHHHHHHHhhcCCCCEEEEE-eCCCC----CCCCeEEeccCCCc
Q 024528 1 MSTVKNTFFISHGSPTLSIDE-----S----LPARHFLKAWKEQVFTQRPNSILVI-SGHWE----TDVPTVNVVQQNDV 66 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~~-----~----~~~~~~~~~l~~~i~~~~Pd~Ivvi-S~Hw~----~~~~~i~~~~~~~~ 66 (266)
|++|+.++++||. |.+...+ . .++.++++++++++++.+||+|||| |+|.. +..+.|+++...+.
T Consensus 1 M~~iv~~~~~sH~-P~~~~~~~~~~~~~~~~~~~~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~ 79 (279)
T PRK13365 1 MASIIGGIGTSHV-PTIGVAYDKGKQQDPAWKPLFDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERF 79 (279)
T ss_pred CHHHHhhhcCCCC-cccccccccCcccchHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEecccc
Confidence 8999999999998 8776511 2 4678999999999999999999999 66743 33456776654443
Q ss_pred -ccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCC---CCeEEEEecCCC
Q 024528 67 -IYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEAN---IPVCQLSVQTRK 142 (266)
Q Consensus 67 -~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~---iPvV~vs~~~~~ 142 (266)
..|| |++... ...++||++||++|++.+.++||| ++...++++|||+||||+||+|+.+ +|||||++|+..
T Consensus 80 ~~~~~-g~~~~~---~~~~~g~~eLA~~i~~~~~~~g~~-~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~ 154 (279)
T PRK13365 80 PVADE-GAGLRP---LPPIRGDVQLQAHIAECLVNDEFD-LTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQ 154 (279)
T ss_pred ccccc-ccCCCC---CCCCCCCHHHHHHHHHHHHHcCCC-eeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEeccc
Confidence 3333 222211 137899999999999999999996 7777889999999999999999766 999999998554
Q ss_pred ----ChHHHHHHHHHhcccc-----CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhc
Q 024528 143 ----DGTHHYNMGKALAPLK-----DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQK 213 (266)
Q Consensus 143 ----~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~ 213 (266)
++++||+||++|++++ |+||+|||||+|||||....+ ++. +++||++++++++ +|.++|+++...
T Consensus 155 ~p~~~~~~~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~~~---g~~--~~~~D~~f~~~l~-~d~~~l~~~~~~ 228 (279)
T PRK13365 155 YPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTGGLSHQIHGERS---GFN--NTEWDMEFLDRFQ-HAPETLTDLTHT 228 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCc---cCC--CHHHHHHHHHHHh-hCHHHHHcCCHH
Confidence 6899999999999994 689999999999999986432 233 3899999999997 699999999642
Q ss_pred CchhhhcCCCcCcHHHHHHHHccCCC
Q 024528 214 APCAKKAHPWPDHFYPLHVAMGAAGE 239 (266)
Q Consensus 214 ~p~~~~a~p~~~h~~pl~~~lGa~~~ 239 (266)
.....+..+.-+.+.|++++||+++
T Consensus 229 -~~~~~aG~~g~ei~~wi~~~gal~~ 253 (279)
T PRK13365 229 -DYVRLGGAESVEQIMWLAMRGALGG 253 (279)
T ss_pred -HHHHHcCcccHHHHHHHHHHHhhcC
Confidence 2223444445567888999999865
No 28
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=100.00 E-value=3e-41 Score=308.07 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCC-CC----CCCeEEeccCCCcccCCCCC--------------ccccccccCCC
Q 024528 24 PARHFLKAWKEQVFTQRPNSILVISGHW-ET----DVPTVNVVQQNDVIYDFYNF--------------PEQMYKLKYPA 84 (266)
Q Consensus 24 ~~~~~~~~l~~~i~~~~Pd~IvviS~Hw-~~----~~~~i~~~~~~~~~~Df~gf--------------p~~~y~~~y~~ 84 (266)
...++++++++++++.+||+|||||||. .. ..+.|+++..++..+|+..| |.-.-++++++
T Consensus 72 ~~~~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 151 (335)
T PRK13363 72 ACEAAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTY 151 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCC
Confidence 3456788999999999999999999975 32 35788888777788776554 22333466899
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccc----cCCCCccccchhhhhhhccCCCCCeEEEEecCCCCh-----HHHHHHHHHhc
Q 024528 85 PGAPELAKRVKQLLTESGFNHVNE----DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDG-----THHYNMGKALA 155 (266)
Q Consensus 85 ~g~~eLa~~i~~~l~~~g~d~~~~----~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~-----~~~~~lG~aL~ 155 (266)
+||++||++|++.+.++||| ++. ..++++|||+|+||.+++|+.++|||||++|...+| ++||+||++|+
T Consensus 152 ~gd~eLA~~I~~~l~~~G~d-~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~ 230 (335)
T PRK13363 152 PVVPELARHMIRRLVDDGFD-ITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSLR 230 (335)
T ss_pred CCCHHHHHHHHHHHHHcCCC-eeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999996 663 345669999999999999999999999999975554 89999999999
Q ss_pred cc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHH
Q 024528 156 PL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPL 230 (266)
Q Consensus 156 ~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl 230 (266)
++ +|+||+|||||+||||+. +++||+|++++|+++|.++|+++..+ .. .+++|++++|
T Consensus 231 ~~i~~~~~d~rVlIIaSGdLSH~l~------------~~efD~~~l~~l~~~D~~~L~~~~~~----~~-~aG~~eir~w 293 (335)
T PRK13363 231 RAIRSWPEDARVAVIASGGLSHFVI------------DEELDRLIIDAIRAKDFAALASLDEA----IL-QSGTSEIKNW 293 (335)
T ss_pred HHHHhcCcCCCEEEEEeCccccCCc------------HHHHHHHHHHHHHcCCHHHHHccCHH----HH-HhCchhHHHH
Confidence 98 468999999999999973 48999999999999999999999654 33 5778999999
Q ss_pred HHHHccCCC-CCceEEe
Q 024528 231 HVAMGAAGE-NANAELI 246 (266)
Q Consensus 231 ~~~lGa~~~-~~~~~~~ 246 (266)
++++||+++ +.+.+++
T Consensus 294 i~~~GAl~~~~~~~evl 310 (335)
T PRK13363 294 IAVAGALDDAGLDMTWV 310 (335)
T ss_pred HHHHHhhccCCCCceEE
Confidence 999999976 2345554
No 29
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=100.00 E-value=1.2e-40 Score=302.42 Aligned_cols=223 Identities=18% Similarity=0.269 Sum_probs=185.9
Q ss_pred CCCcceEEEEcCCCCCCCCCCC-----chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEeccCCCcccCC
Q 024528 1 MSTVKNTFFISHGSPTLSIDES-----LPARHFLKAWKEQVFTQRPNSILVISGHWETD-----VPTVNVVQQNDVIYDF 70 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~~~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-----~~~i~~~~~~~~~~Df 70 (266)
|+.+ ++++||. |.+..++. ....++++++++++++.+||+||||||||.+. .+.|+++......+||
T Consensus 1 m~~~--~~~~sH~-P~~~~~~~~~~~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~ 77 (313)
T PRK13370 1 MTAA--LVCLSHS-PLVGYVDPAQEVLAEVNAVIAAAREFVAAFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDY 77 (313)
T ss_pred CCce--eeecCCC-CccCCCCCChHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcccccccccCCceEeccCCCcCccc
Confidence 6643 3889997 87765442 25668899999999999999999999965544 5689888888899999
Q ss_pred CCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecC----CCChH
Q 024528 71 YNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQT----RKDGT 145 (266)
Q Consensus 71 ~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~----~~~~~ 145 (266)
.+|+. +.++|++||++|.+.+.+.||| ++...++++|||+|+||++|+|+ .++|||||++|+ ..+++
T Consensus 78 ~~~~g-------~~~~d~eLA~~i~~~~~~~g~d-~a~~~~~~lDHG~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~ 149 (313)
T PRK13370 78 GTAAG-------PLPVPSDLAEALAEAVLDSGID-VAVSYRMQVDHGFAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFR 149 (313)
T ss_pred ccCCC-------CCCCCHHHHHHHHHHhHhcCCC-hhhcCCcCCCEeHHHHHHHhcCCCCCceEEEEeecCCCCCcCCHH
Confidence 99876 5789999999999999999997 77788999999999999999987 459999999986 35679
Q ss_pred HHHHHHHHhcccc---CCCeEEEEecCCcccccccc--------------------------------------CCCCCc
Q 024528 146 HHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQ--------------------------------------FDGDSV 184 (266)
Q Consensus 146 ~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~--------------------------------------~~~~~~ 184 (266)
+|++||++|+++. ++||+|||||||||++.... .++.++
T Consensus 150 r~~~lG~aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~erl~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~ 229 (313)
T PRK13370 150 RVRLLGEAVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRERLIAGRNPTPEERAARQQRVIAAARIFAAGQSAL 229 (313)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHHHHccCCccHHHHHHHHhhHHhhhhhcccCcccC
Confidence 9999999999874 79999999999999841111 122356
Q ss_pred chhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCc--HHHHHHHHccC
Q 024528 185 ASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDH--FYPLHVAMGAA 237 (266)
Q Consensus 185 ~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h--~~pl~~~lGa~ 237 (266)
.+.+++||+++++.+++||.++|.+++.+ .....++.|+ +++|++|+||.
T Consensus 230 ~p~~~~~D~~~l~~l~~gd~~~l~~~~~~---~~~~~aG~~g~E~r~w~~~~gal 281 (313)
T PRK13370 230 HPLNPEWDRAFLDLLESGDLAALDAWTNE---EITREAGKSAHEIRTWVAAFAAL 281 (313)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHhcCCHH---HHHHHhccchHHHHHHHHHHHHH
Confidence 78999999999999999999999999644 2333477888 99999999998
No 30
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=100.00 E-value=2.1e-40 Score=301.95 Aligned_cols=200 Identities=19% Similarity=0.237 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeC-CCCC----CCCeEEeccCCCcccCCCC----------------CccccccccC
Q 024528 24 PARHFLKAWKEQVFTQRPNSILVISG-HWET----DVPTVNVVQQNDVIYDFYN----------------FPEQMYKLKY 82 (266)
Q Consensus 24 ~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~~----~~~~i~~~~~~~~~~Df~g----------------fp~~~y~~~y 82 (266)
...++++++++++++.+||+|||||| |.+. ..+.|+++..++..+|+.. .|+ +.+
T Consensus 70 ~~~~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~ 145 (328)
T cd07366 70 RCQAALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAPD----EAR 145 (328)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCCC----CCc
Confidence 44577889999999999999999999 6543 3468888877777777542 233 556
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccc----cCCCCccccchhhhhhhccCCCCCeEEEEecCCC-----ChHHHHHHHHH
Q 024528 83 PAPGAPELAKRVKQLLTESGFNHVNE----DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK-----DGTHHYNMGKA 153 (266)
Q Consensus 83 ~~~g~~eLa~~i~~~l~~~g~d~~~~----~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~-----~~~~~~~lG~a 153 (266)
+++||++||++|++.+.++||| ++. ..++++|||.|+|+.+++|+.++||||||+|... ++++||+||++
T Consensus 146 ~~~gd~eLA~~I~~~l~~~G~d-v~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~a 224 (328)
T cd07366 146 TYPCHPELARHLIKHTVADGFD-VAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRA 224 (328)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-eeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999996 665 3345789999999999999999999999999854 66999999999
Q ss_pred hccc-----cCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHH
Q 024528 154 LAPL-----KDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFY 228 (266)
Q Consensus 154 L~~~-----~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~ 228 (266)
|+++ +|+||+|||||+||||| ++++||+|+++++++||.++|++++.+ . ..+++|+++
T Consensus 225 L~~ai~~~~~d~rV~IIaSGgLSH~l------------~~~eFD~~~l~~l~~gD~~~L~~~~~~----~-~~aG~~elr 287 (328)
T cd07366 225 VARAIRSWPGDARVGVIASGGLSHFV------------IDEEFDRRILDALRNRDAEFLSSLPEA----H-LQSGTSELK 287 (328)
T ss_pred HHHHHHhcCCCCCEEEEEeCccccCC------------ChHHHHHHHHHHHHcCCHHHHHcCCHH----H-HhccchhHH
Confidence 9998 47999999999999998 459999999999999999999999654 2 346789999
Q ss_pred HHHHHHccCCCC-CceEE
Q 024528 229 PLHVAMGAAGEN-ANAEL 245 (266)
Q Consensus 229 pl~~~lGa~~~~-~~~~~ 245 (266)
+|++++||+++. .++++
T Consensus 288 ~wi~~~GAl~~~~~~~~v 305 (328)
T cd07366 288 NWIAAAGALDDLGLKMTS 305 (328)
T ss_pred HHHHHHHhhcCCCcceeE
Confidence 999999999653 23444
No 31
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=100.00 E-value=4.6e-40 Score=298.25 Aligned_cols=225 Identities=19% Similarity=0.277 Sum_probs=186.5
Q ss_pred CCCcceEEEEcCCCCCCCCCCC-----chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----CCeEEeccCCCcccCC
Q 024528 1 MSTVKNTFFISHGSPTLSIDES-----LPARHFLKAWKEQVFTQRPNSILVISGHWETD-----VPTVNVVQQNDVIYDF 70 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~~~~~~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~-----~~~i~~~~~~~~~~Df 70 (266)
|++. ++++||. |.+...++ .+..++++++++++++.+||+||||||||... .+.|+++......+||
T Consensus 1 m~~~--~~~~sH~-p~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~ 77 (310)
T cd07365 1 MTVA--LICMSHS-PLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDY 77 (310)
T ss_pred CCce--eeeeCCC-cccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccCCceEeeccCcccccc
Confidence 5543 4899997 86644321 25668899999999999999999999987653 3688888778899999
Q ss_pred CCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecCC----CChH
Q 024528 71 YNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQTR----KDGT 145 (266)
Q Consensus 71 ~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~----~~~~ 145 (266)
.+|+. +.++|++||++|.+.+.+.||| ++...++++|||+||||+||++. .++|||||++|.. .+++
T Consensus 78 ~~p~g-------~~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~~VPL~fL~~~~~~~pVVPI~vn~~~~P~~s~~ 149 (310)
T cd07365 78 GTLAG-------PLNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGFTQPLEELFGGLDRYPVIPIFVNSVAPPLAPMR 149 (310)
T ss_pred ccCCC-------CCCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcchHhhHHHHhCCCCCCeEEEEEecCCCCCCCCHH
Confidence 99876 5678999999999999999995 88888899999999999999987 4699999999875 5678
Q ss_pred HHHHHHHHhcccc---CCCeEEEEecCCcccccccc--------------------------------------CCCCCc
Q 024528 146 HHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQ--------------------------------------FDGDSV 184 (266)
Q Consensus 146 ~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~--------------------------------------~~~~~~ 184 (266)
+|++||++|+++. ++||+|||||||||++.... .++.++
T Consensus 150 r~~~lG~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~ 229 (310)
T cd07365 150 RARALGEAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAERLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTL 229 (310)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHHHHHhcccchHHHHHHHHhhhhhhhhhcccCcccC
Confidence 9999999999974 68999999999999941111 123356
Q ss_pred chhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcH--HHHHHHHccCCC
Q 024528 185 ASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHF--YPLHVAMGAAGE 239 (266)
Q Consensus 185 ~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~--~pl~~~lGa~~~ 239 (266)
.|.+++||+++++++++||.++|++++.+ ...+.++.|++ ++|++|+||...
T Consensus 230 ~p~~~~fD~~~l~~~~~gd~~~l~~~~~~---~~~~~aG~~g~Ei~~w~~~~gal~~ 283 (310)
T cd07365 230 MPLNPEWDRAFLDLLASGDLAALDAMTND---EIAAQAGNSAHEVRTWVAAFAALAA 283 (310)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHcCCHH---HHHHHhccccHHHHHHHHHHHHhhh
Confidence 78999999999999999999999999532 24567778888 999999999864
No 32
>PRK13373 putative dioxygenase; Provisional
Probab=100.00 E-value=7.2e-38 Score=281.95 Aligned_cols=236 Identities=19% Similarity=0.209 Sum_probs=185.4
Q ss_pred CCCcceEEEEcCCCCCC-CCCC-C-----chHHHHHHHHHHHhhcCCCCEEEEEeC-CCCC----CCCeEEeccCCCccc
Q 024528 1 MSTVKNTFFISHGSPTL-SIDE-S-----LPARHFLKAWKEQVFTQRPNSILVISG-HWET----DVPTVNVVQQNDVIY 68 (266)
Q Consensus 1 M~~~~~~~fisHg~P~~-~~~~-~-----~~~~~~~~~l~~~i~~~~Pd~IvviS~-Hw~~----~~~~i~~~~~~~~~~ 68 (266)
|++++..+++||. |.+ ...+ . .+..++++++++++++.+||+||||++ ||.. ..++|+++...+..+
T Consensus 1 Ma~iv~~~~~SHs-Pl~~g~~d~p~~~~~~~v~~a~~~ir~~i~e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g 79 (344)
T PRK13373 1 MAKIVAGIGMSHA-PGALGWPDAPSASVRRRLLQAADRLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPG 79 (344)
T ss_pred ChHHHhhhcCCCC-CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhhhhccccCCceEEEecccccC
Confidence 8999989999997 866 3333 1 256688999999999999999999955 9865 357788877666777
Q ss_pred CCCCCccc-cccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCC----C
Q 024528 69 DFYNFPEQ-MYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRK----D 143 (266)
Q Consensus 69 Df~gfp~~-~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~----~ 143 (266)
|+.++-.. -....-+++|+++||++|++.+.++||| ++.+.++.+|||+++||.+|+|+..+|||||.+|+.. +
T Consensus 80 ~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfD-va~s~~m~vDHg~~vPl~~l~~~~~~pvVPV~vN~~~~P~p~ 158 (344)
T PRK13373 80 PATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYD-VARMGEIEYGNNLMVPWKLMAPRSAPAIIPVFTNVFSPPVMP 158 (344)
T ss_pred CccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCC-eeeeeceeCCcceeeeHHHhCCCCCCCeEEEEEecccCCCCC
Confidence 76642100 0011237899999999999999999998 8889999999999999999999988899999999864 4
Q ss_pred hHHHHHHHHHhcccc-----CCCeEEEEecCCcccccccc----------------------------------------
Q 024528 144 GTHHYNMGKALAPLK-----DEGVLIIGSGSATHNLRALQ---------------------------------------- 178 (266)
Q Consensus 144 ~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH~l~~~~---------------------------------------- 178 (266)
.+||++||++|+++. |+||+|||||+|||++....
T Consensus 159 ~~R~~~lG~ai~~ai~~~~~d~rV~~~~sGgLSH~p~~~~~~~p~~~~~l~~~~~~q~~G~~~~~r~~~~~r~~~~~~i~ 238 (344)
T PRK13373 159 YRRAYAFGAALRNAAEALDADLRVAFMATGGMSHWPPFWNDSSPEADAFLARMKAFQTHGKSVLEKDPHLLRDLAAYEIE 238 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecCcccCCCcccccCchhhhhhhhccccccccCCCchhhhhhhhhhhhhhhhh
Confidence 699999999999984 58999999999999753200
Q ss_pred ------CCCCCcch-hHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCC
Q 024528 179 ------FDGDSVAS-WASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGE 239 (266)
Q Consensus 179 ------~~~~~~~~-~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~ 239 (266)
++.+..++ .+++||+++++.+++||.++|.++..+ ...+.+..+.-.++.|+.+.||+++
T Consensus 239 ~~~r~~~~~~~~~~~iN~ewD~~fLd~l~~gD~e~L~~~t~~-e~~~~~G~gg~Ei~~Wiaa~gAlg~ 305 (344)
T PRK13373 239 MAERNQWPLNSPHPLVNEAWDRQMLDALARGDVEFLCGLQYE-DVKRDGGHGGQEIINWIELMGAMKG 305 (344)
T ss_pred HHHHhhccccccccccCHHHHHHHHHHHHcCCHHHHHcCCHH-HHHHHcCcccHHHHHHHHHHHhccC
Confidence 00011224 789999999999999999999999542 2334444445579999999999864
No 33
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=2e-24 Score=183.09 Aligned_cols=218 Identities=17% Similarity=0.211 Sum_probs=171.7
Q ss_pred ceEEEEcCCCCCCCCCCC---chHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCcccccccc
Q 024528 5 KNTFFISHGSPTLSIDES---LPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLK 81 (266)
Q Consensus 5 ~~~~fisHg~P~~~~~~~---~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~ 81 (266)
...+.+||| +-+..+++ +.+.++++++++.+ ..++++||||||.......+.+.-...+++-++.+-.. .++
T Consensus 3 ngiyv~PHg-dEii~~~~~e~~~l~kA~k~i~~~~--~~seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~--~i~ 77 (261)
T COG3885 3 NGIYVIPHG-DEIIDPEDEESRKLNKAIKEIASDD--KGSETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHH--PIR 77 (261)
T ss_pred ccEEeccCC-ccccCCchhHHHHHHHHHHHHHccc--CCCceEEEEcCCceeeechhhHHhHHhhcccccccccC--cch
Confidence 456789998 66655443 46677777777764 34999999999987666555554333344433333221 245
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCccc---c------cCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHH
Q 024528 82 YPAPGAPELAKRVKQLLTESGFNHVN---E------DTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGK 152 (266)
Q Consensus 82 y~~~g~~eLa~~i~~~l~~~g~d~~~---~------~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~ 152 (266)
..+..|.+||+.|.+..+.+ | |+. . ..+..||||..+||+|+. ...||.+.... ++-+..++||.
T Consensus 78 ~ey~~dreLa~~I~~~a~g~-~-p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk---~rrIV~lt~ar-l~~~~l~~Fg~ 151 (261)
T COG3885 78 KEYKNDRELADKIYEEAKGQ-F-PLVCITFSILKGNYSRCPLDWGSLIPLYFLK---RRRIVLLTPAR-LSREILVKFGD 151 (261)
T ss_pred hhhhccHHHHHHHHHHhccC-C-ceEEEechhhcCcCCccccccccccchhhcc---ceeEEEechhh-ccHHHHHHHHH
Confidence 56678999999999998765 6 443 1 234689999999999994 46799988865 99999999999
Q ss_pred Hhcccc---CCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHH
Q 024528 153 ALAPLK---DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYP 229 (266)
Q Consensus 153 aL~~~~---d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~p 229 (266)
.|.++. ++||.+|.|++.+|.+.+.+|+ ++.+.+++||+.+++.+.+||.+.|++++.+ ..+.+.+|.|++
T Consensus 152 ~l~~~le~~~~ki~lIiSaD~aHth~edGPY--GYs~~se~yDk~iv~~lks~n~e~l~~iD~~----~I~~Akpdsy~s 225 (261)
T COG3885 152 NLGKALEEYERKISLIISADHAHTHDEDGPY--GYSEESEEYDKIIVDSLKSGNFEALLSIDDE----VIAEAKPDSYWS 225 (261)
T ss_pred HHHHHHHHhhcceEEEEecccccccCCCCCC--CCChhHHHHHHHHHHHhcccCHHHHHhccHH----HHHhcCCchHHH
Confidence 988874 5899999999999999999887 5789999999999999999999999999766 788999999999
Q ss_pred HHHHHccCCC
Q 024528 230 LHVAMGAAGE 239 (266)
Q Consensus 230 l~~~lGa~~~ 239 (266)
+++++|....
T Consensus 226 lli~lgiLe~ 235 (261)
T COG3885 226 LLILLGILEE 235 (261)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 34
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=99.88 E-value=2.4e-21 Score=173.04 Aligned_cols=204 Identities=19% Similarity=0.175 Sum_probs=151.0
Q ss_pred eEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCCC
Q 024528 6 NTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAP 85 (266)
Q Consensus 6 ~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~ 85 (266)
-++-+||.+.... ..-+..+++.+. ..+||+|||++||-......+.+.........++ +.+
T Consensus 37 ~~~i~PHagy~ys---G~~aa~ay~~l~----~~~p~~vvilgP~H~~~~~~~~~~~~~~~~TPlG-----------~v~ 98 (266)
T cd07361 37 KAIIVPHAGYVYS---GPVAAHAYAALD----PGKPKRVVILGPSHTGYGRGCALSSAGAWETPLG-----------DVP 98 (266)
T ss_pred eEEEeCCCCcccc---HHHHHHHHHHhc----cCCCCEEEEECCCCCCCCCceeeCCCCCeeCCCc-----------CCc
Confidence 3567788643321 122345566654 5789999999995444434444443333222221 677
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecCCCChHHHHHHHHHhccc-cCCCeE
Q 024528 86 GAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRKDGTHHYNMGKALAPL-KDEGVL 163 (266)
Q Consensus 86 g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~~~-~d~~v~ 163 (266)
.|.+++++|.+.. +++ .........|||+-|||.||..- .++|||||.+ ...++++++++|++|+++ .++|++
T Consensus 99 vd~~l~~~L~~~~---~~~-~~~~~~~~~EHs~EvqLpfLq~~~~~~~iVPi~v-g~~~~~~~~~~g~~l~~~~~~~~~~ 173 (266)
T cd07361 99 VDRELVEELLKLG---GFI-VDDELAHEEEHSLEVQLPFLQYLLPDFKIVPILV-GDQSPEAAEALAEALSKYLLDPDTL 173 (266)
T ss_pred cCHHHHHHHHhcC---Ccc-ccCcchhhhhceeeeHHHHHHHHcCCCeEEEEEe-CCCCHHHHHHHHHHHHHHhcCCCeE
Confidence 8999999997654 553 33335678999999999997543 4899999999 457999999999999997 579999
Q ss_pred EEEecCCccccccccCCCCCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCC--C
Q 024528 164 IIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGEN--A 241 (266)
Q Consensus 164 iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~--~ 241 (266)
||+|||+||++.. +.+++||+.++++|+++|.+.++++..+ ...+.|++.|+.++++++... .
T Consensus 174 iV~SsDlSH~~~~---------~~a~~~D~~~i~~i~~~d~~~~~~~~~~------~~~~~CG~~~i~~~l~~~~~~~~~ 238 (266)
T cd07361 174 IVISSDFSHYGPR---------ESAERLDRKAIEAILALDPEGFYEYLRE------TGNTACGRGPIAVLLEAAKELGAL 238 (266)
T ss_pred EEEeCCCCCcCCH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHh------cCCceECHHHHHHHHHHHHhcCCC
Confidence 9999999998644 6789999999999999999999998543 246799999999999987643 3
Q ss_pred ceEEec
Q 024528 242 NAELIH 247 (266)
Q Consensus 242 ~~~~~~ 247 (266)
+++++.
T Consensus 239 ~~~ll~ 244 (266)
T cd07361 239 KAELLD 244 (266)
T ss_pred EEEEee
Confidence 566653
No 35
>PRK00782 hypothetical protein; Provisional
Probab=99.78 E-value=4.5e-18 Score=152.09 Aligned_cols=174 Identities=19% Similarity=0.178 Sum_probs=129.4
Q ss_pred CCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccch
Q 024528 40 RPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAW 119 (266)
Q Consensus 40 ~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~ 119 (266)
.||+|||++||-......+.+.... ... |= .+.+.|.+++++|...+ + ...+.....||+.-
T Consensus 63 ~p~~vvilGp~H~~~~~~~av~~~~-~~T-----Pl------G~v~vD~~l~~~L~~~~----~--~~~~~ah~~EHSiE 124 (267)
T PRK00782 63 EAETFVIIGPNHTGLGSPVAVSPEG-WKT-----PL------GDVEVDEELAKALASGI----I--DLDELAHKYEHSIE 124 (267)
T ss_pred CCCEEEEECCCCCCCCCCeEEecCc-ccC-----CC------cCCcCCHHHHHHHHHhh----h--ccchhhhhhhceEE
Confidence 4999999999444455556554322 111 21 16788999999997222 1 11123357899999
Q ss_pred hhhhhhccC--CCCCeEEEEecCCCChHHHHHHHHHhcccc---CCCeEEEEecCCccccccccCCCCCcchhHHHHHHH
Q 024528 120 VPLMLMYPE--ANIPVCQLSVQTRKDGTHHYNMGKALAPLK---DEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNW 194 (266)
Q Consensus 120 vPL~~l~p~--~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~---d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~ 194 (266)
|+|-||..- .++|||||.+ ...++++++++|++|+++. +++++||+|||+||+.. .+.+++||+.
T Consensus 125 vqlPFLq~~~~~~~~iVPI~v-g~~~~~~~~~lg~~L~~~~~~~~~~vliIaSsDlSH~~~---------~~~a~~~D~~ 194 (267)
T PRK00782 125 VQLPFLQYLFGKDFKIVPICL-GMQDEETAREVGEAIAEAIEELGKKVVVIASSDFTHYEP---------AERAKEKDMI 194 (267)
T ss_pred ecHHHhhHhhcCCCeEEEEEc-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCC---------HHHHHHHHHH
Confidence 999666443 4899999998 4688999999999999863 67999999999999753 3678999999
Q ss_pred HHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCC--CceEEec
Q 024528 195 LKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGEN--ANAELIH 247 (266)
Q Consensus 195 v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~--~~~~~~~ 247 (266)
++++|+++|.+.|.+... ..+.+.|++.|+.++++++..- .+++.+.
T Consensus 195 ~i~~I~~~d~~~l~~~~~------~~~~~~CG~~pi~~~l~~~~~~g~~~~~ll~ 243 (267)
T PRK00782 195 LIEAILDLDVDGFYDEIY------RMNATACGYGPIAAMMTYSKKLGASKAELLH 243 (267)
T ss_pred HHHHHHcCCHHHHHHHHH------hcCCceECHHHHHHHHHHHHhcCCCeEEEee
Confidence 999999999999987632 3456799999999999887542 2466654
No 36
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=99.10 E-value=4.3e-09 Score=93.01 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=125.7
Q ss_pred CCCCEEEEEeC-CCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCcccc
Q 024528 39 QRPNSILVISG-HWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHG 117 (266)
Q Consensus 39 ~~Pd~IvviS~-Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG 117 (266)
.+||+||+++| |.- .+..+.+... ..+--.+ -+.+.|.|+++.|.+. .++. .-......-.|+
T Consensus 73 ~~~~~vVIlGPnHtg-~g~~vsv~~~-------g~w~TPL----G~v~vD~e~~~~l~~~---~~~~-~~D~~ah~~EHS 136 (279)
T COG1355 73 GEPDTVVILGPNHTG-LGSPVSVSPE-------GEWETPL----GDVKVDSELAEELVKH---SGII-DLDELAHLYEHS 136 (279)
T ss_pred CCCCEEEEECCCCCC-CCCceEEecC-------CccccCC----CCeeeCHHHHHHHHHh---cCCC-Cchhhhhhhhce
Confidence 79999999999 753 3334444321 1111111 2667799999998876 3441 112233455777
Q ss_pred chhh---hhhhccCCCCCeEEEEecCCCChHHHHHHHHHhcccc-CC-CeEEEEecCCccccccccCCCCCcchhHHHHH
Q 024528 118 AWVP---LMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLK-DE-GVLIIGSGSATHNLRALQFDGDSVASWASEFD 192 (266)
Q Consensus 118 ~~vP---L~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~-d~-~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD 192 (266)
+=|= |.+++++ +..||||.+ ...+.+...++|++|.++. |. +++||+|=|.+|... ....+++|
T Consensus 137 iEvQlPFLqy~f~~-~fKIVPi~m-~~q~~~~a~~ig~~i~k~i~e~~~~liIaSSDf~HYep---------~~~~~~~D 205 (279)
T COG1355 137 IEVQLPFLQYLFGD-EFKIVPICM-GMQDKEVARDIGRAIAKVIKELGDALIIASSDFTHYEP---------QDIVRRKD 205 (279)
T ss_pred EEeehHHHHHHccC-CcEEEeEEE-ecccHHHHHHHHHHHHHHHhhcCCeEEEEecCccccCc---------hhhhhhhH
Confidence 6654 4445665 899999999 6789999999999999986 44 599999999999831 25678999
Q ss_pred HHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCC--CCCceEEec
Q 024528 193 NWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAG--ENANAELIH 247 (266)
Q Consensus 193 ~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~--~~~~~~~~~ 247 (266)
+.++++|++.|.+.+..+.+ ..+.+.|++-|+.+++=++. +..+.++++
T Consensus 206 ~~~I~~I~~~d~~g~~~~~~------~~n~t~CG~gpi~~~l~~~k~~g~~~~~ll~ 256 (279)
T COG1355 206 RILIKAILALDLDGFYELLE------RTNATMCGYGPIAVLLEASKKLGAKEAKLLD 256 (279)
T ss_pred HHHHHHHHhcCHHHHHHHHH------hcCCccccccHHHHHHHHHHHcCcccceeec
Confidence 99999999999999998843 46778999999988876542 223456554
No 37
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life. The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
Probab=98.96 E-value=2.5e-09 Score=96.17 Aligned_cols=186 Identities=20% Similarity=0.239 Sum_probs=107.3
Q ss_pred cCCCCEEEEEeC-CCCCCCCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccc
Q 024528 38 TQRPNSILVISG-HWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDH 116 (266)
Q Consensus 38 ~~~Pd~IvviS~-Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDH 116 (266)
..+|++|||++| |.... ..+.+... .. +.-|= .+.+.|.+++++|.+.... + ...+.....+|
T Consensus 59 ~~~~~~vvilGpsH~~~~-~~~~~~~~-~~----~~TPl------G~v~vD~e~~~~L~~~~~~--~--~~~~~~h~~EH 122 (276)
T PF01875_consen 59 ESKPKRVVILGPSHTGYG-DGIAVSPF-DS----WETPL------GEVPVDSELAEELAKNFPF--F--EFDDEAHEEEH 122 (276)
T ss_dssp TTT--EEEEEEE-SSS---SSEEE-SS-SE----E--SS--------EEB-HHHHHHHHHTT-E-----EE--HHHHH--
T ss_pred hcCCCEEEEECCCccCCC-CCeEeccC-Ce----EECCC------cccccCHHHHHHHHhcCCC--c--ccchhhccccC
Confidence 468999999988 86433 33433321 11 11121 2666799999888765321 2 11222236688
Q ss_pred cchhhhhh---hccC-CCCCeEEEEecCCCChHHHHHHHHHhcccc-CCCeEEEEecCCccccccccCCCCCcchhHHH-
Q 024528 117 GAWVPLML---MYPE-ANIPVCQLSVQTRKDGTHHYNMGKALAPLK-DEGVLIIGSGSATHNLRALQFDGDSVASWASE- 190 (266)
Q Consensus 117 G~~vPL~~---l~p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~-d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~e- 190 (266)
..=|-|=| ++|+ .+++||||.+ ...+.+...++|++|.++. |++++||+|-|+||.....+.. ....+..++
T Consensus 123 SlEvqlPFLq~~~~~~~~~~IVPI~v-g~~~~~~~~~~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~-~~~~~~~~~~ 200 (276)
T PF01875_consen 123 SLEVQLPFLQYLFPDRRDFKIVPILV-GDQSPETAKELAEALAEYLKDEGTLIVASSDFSHYGPRFGDA-PKPEEIAEKI 200 (276)
T ss_dssp TTGGGHHHHHHHTGGGTS-EEEEEEE--S--HHHHHHHHHHHHHHHTSTTEEEEEE----EEBGGGT---GGGSSHHHHH
T ss_pred cEEEHHHHHHHHhccCCceEEEEEEe-cCCCHHHHHHHHHHHHHHHcCCCEEEEEeCccccccccccCC-CCCHHHHHHH
Confidence 88777555 4577 6799999999 5678888999999999974 6789999999999987555421 112234444
Q ss_pred --HHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHHHHHHHccCCCC--CceEEec
Q 024528 191 --FDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYPLHVAMGAAGEN--ANAELIH 247 (266)
Q Consensus 191 --FD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~pl~~~lGa~~~~--~~~~~~~ 247 (266)
.|+..+++|+++|.+.+.+.-+ ..+.+-|++-|+.+++-++... .+++.++
T Consensus 201 ~~~D~~~i~~i~~~d~~~~~~~~~------~~~~t~CG~~pi~~~l~~~~~~~~~~~~ll~ 255 (276)
T PF01875_consen 201 EALDREAIEAIEALDPEGFYEYLK------ETNNTACGRGPIAVLLEAAKALGAWKGELLD 255 (276)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH------HH----TTHHHHHHHHHHHHHHHCEEEEEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH------HcCCceechHHHHHHHHHHHHcCCCeEEEee
Confidence 5999999999999999988632 3455689999999988765431 3555543
No 38
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=96.27 E-value=0.023 Score=49.89 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=98.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-CCcccccCCCCccccchhhhhhhc----cC-CCCCeEEEEecCCCChHHHHHHHHHhc
Q 024528 82 YPAPGAPELAKRVKQLLTESG-FNHVNEDTKRGLDHGAWVPLMLMY----PE-ANIPVCQLSVQTRKDGTHHYNMGKALA 155 (266)
Q Consensus 82 y~~~g~~eLa~~i~~~l~~~g-~d~~~~~~~~~lDHG~~vPL~~l~----p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~ 155 (266)
++++.|.++-++ |.+.| |+.+..+ .-.-.|..-+=|-++- +. -.+.||||-+ +.++++.--..|+.|.
T Consensus 99 gdLkVD~~i~~e----L~~tg~F~~Mdl~-tde~EHSiEM~lP~lak~l~~~~~~~kivPilv-g~ls~~~e~~~g~lls 172 (296)
T KOG3086|consen 99 GDLKVDQKICKE----LWATGMFERMDLD-TDEAEHSIEMQLPYLAKVLESRKDTVKIVPILV-GALSPSVEQCYGKLLS 172 (296)
T ss_pred ccccccHHHHHH----HHHcCCccccccc-cccchhhhhhhhHHHHHHHhhcCceEEEEeeEe-cccChHHHHHHHHHHH
Confidence 466667665554 44555 4322211 1223465544443332 22 2478999999 6799999999999999
Q ss_pred ccc-CCCeEEEEecCCccccccccCC--C---CCcchhHHHHHHHHHHHHHcCCHhHHhcchhcCchhhhcCCCcCcHHH
Q 024528 156 PLK-DEGVLIIGSGSATHNLRALQFD--G---DSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDHFYP 229 (266)
Q Consensus 156 ~~~-d~~v~iiaSG~lSH~l~~~~~~--~---~~~~~~~~eFD~~v~~~l~~gd~~~l~~~~~~~p~~~~a~p~~~h~~p 229 (266)
+.. |.+=++|-|-|--||=+..+.. . .+...--+..|+.=++.|+..+.+++-++-. .-+.|.|+=-|
T Consensus 173 ~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe~lDk~gM~iiet~~pdaf~~YLk------~~~NTICGr~P 246 (296)
T KOG3086|consen 173 KYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIENLDKQGMKIIETLDPDAFSEYLK------KTQNTICGRHP 246 (296)
T ss_pred HHhcCccceEEEeccccccccccccccccCCCchHHHHHHHHHHhhhhhhhcCChHHHHHHHH------HhCCccccCcc
Confidence 975 7777888899999987665431 1 0112333678999999999999999888743 45778999999
Q ss_pred HHHHHccC
Q 024528 230 LHVAMGAA 237 (266)
Q Consensus 230 l~~~lGa~ 237 (266)
+-++|+|.
T Consensus 247 I~v~l~a~ 254 (296)
T KOG3086|consen 247 ISVILSAL 254 (296)
T ss_pred HHHHHHHH
Confidence 99999864
No 39
>PRK09271 flavodoxin; Provisional
Probab=86.43 E-value=4.5 Score=33.05 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC---CCChHHHHHHHHHhccc--cCCCe
Q 024528 88 PELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT---RKDGTHHYNMGKALAPL--KDEGV 162 (266)
Q Consensus 88 ~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~---~~~~~~~~~lG~aL~~~--~d~~v 162 (266)
..+|+.|++.+++.|++ +... +....+ ..+. ...-.+.-+|-+..++ +..|.....|=+.|... ..+++
T Consensus 15 e~~A~~ia~~l~~~g~~-v~~~-~~~~~~--~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~ 88 (160)
T PRK09271 15 REVAREIEERCEEAGHE-VDWV-ETDVQT--LAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNV 88 (160)
T ss_pred HHHHHHHHHHHHhCCCe-eEEE-eccccc--cccc--ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeE
Confidence 56799999999999984 4321 111111 0011 0001234555555532 34455555555555553 35789
Q ss_pred EEEEecCCcc
Q 024528 163 LIIGSGSATH 172 (266)
Q Consensus 163 ~iiaSG~lSH 172 (266)
+++|||+.+.
T Consensus 89 avfgsgd~~~ 98 (160)
T PRK09271 89 AVFGTGETQW 98 (160)
T ss_pred EEEecCCCCc
Confidence 9999998655
No 40
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=82.62 E-value=15 Score=32.78 Aligned_cols=98 Identities=13% Similarity=0.239 Sum_probs=62.1
Q ss_pred HHHHHHHhh--cCCCCEEEEEeCCCCCC-CCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHH-hCCCC
Q 024528 29 LKAWKEQVF--TQRPNSILVISGHWETD-VPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLT-ESGFN 104 (266)
Q Consensus 29 ~~~l~~~i~--~~~Pd~IvviS~Hw~~~-~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~-~~g~d 104 (266)
.+++.+.+. ..+-..+|+|+.|-+.. .+....+. -|+......+....+++|++.+.+.++ +.|+
T Consensus 124 H~al~~~L~~~~~~~g~~~liD~HSm~s~~p~~~~g~----------~pd~~lG~~~G~s~~~~l~~~l~~~l~~~~g~- 192 (263)
T TIGR02017 124 HAALQAEIERLRAQHGYAVLYDAHSIRSVIPRLFEGK----------LPDFNIGTNDGASCDPALTDAVEAVCAKATGY- 192 (263)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccCCccCCCcCCCC----------CCCEEEeCCCCCCCCHHHHHHHHHHHHhcCCc-
Confidence 344444443 34567789999994322 12111111 122222223344569999999999996 6788
Q ss_pred cccccCCCCccccchhhhhhhccCCCCCeEEEEecC
Q 024528 105 HVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT 140 (266)
Q Consensus 105 ~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~ 140 (266)
.+..+..+ .|.++.-+|=.|+..+..|||-+|.
T Consensus 193 ~v~~N~Py---~Gg~itr~yg~p~~~vhaiQiEi~r 225 (263)
T TIGR02017 193 SHVLNGRF---KGGWITRHYGQPQNGVHAVQMELAQ 225 (263)
T ss_pred eEEeCCCC---CCcceecccCCCCCCCceEeeeEch
Confidence 46544333 6788888888898999999999984
No 41
>PRK05723 flavodoxin; Provisional
Probab=81.00 E-value=7.8 Score=31.58 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC-CCChHHHHHHHHHhc-----cccCC
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT-RKDGTHHYNMGKALA-----PLKDE 160 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~-~~~~~~~~~lG~aL~-----~~~d~ 160 (266)
..++|++|.+.+.+.|++ +.......+ .-+.- + +.+.=|+-+|.-. +-.|.....|=+.|. .+.+.
T Consensus 14 ae~~A~~la~~l~~~g~~-~~~~~~~~~-----~~~~~-~-~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~ 85 (151)
T PRK05723 14 AEEVARHAESLLKAAGFE-AWHNPRASL-----QDLQA-F-APEALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGL 85 (151)
T ss_pred HHHHHHHHHHHHHHCCCc-eeecCcCCH-----hHHHh-C-CCCeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCC
Confidence 456899999999988985 432111111 01100 0 1121133333211 133444444444444 45568
Q ss_pred CeEEEEecCCccccccccCCCCCcchhHHHHHHHHHH
Q 024528 161 GVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKD 197 (266)
Q Consensus 161 ~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~ 197 (266)
+++|+|.|+.++.- .+-..+..+|+++.+
T Consensus 86 ~~aVfGLGDs~Y~~--------~Fc~a~~~ld~~L~~ 114 (151)
T PRK05723 86 PGAVIALGDSSYGD--------TFCGGGEQMRELFAE 114 (151)
T ss_pred EEEEEeEeCCcchH--------HHhHHHHHHHHHHHH
Confidence 99999999997620 122455667776654
No 42
>PRK09004 FMN-binding protein MioC; Provisional
Probab=79.95 E-value=9.2 Score=30.85 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC---CCChHHHHHHHHHhcc----ccC
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT---RKDGTHHYNMGKALAP----LKD 159 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~---~~~~~~~~~lG~aL~~----~~d 159 (266)
..++|++|.+.+.+.|++ +.... .+. +-. .++ .++|-+.+.+ +-.|.....|=+.|.+ +..
T Consensus 15 ae~~A~~l~~~~~~~g~~-~~~~~---~~~----~~~--l~~--~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g 82 (146)
T PRK09004 15 AEYVADHLAEKLEEAGFS-TETLH---GPL----LDD--LSA--SGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQ 82 (146)
T ss_pred HHHHHHHHHHHHHHcCCc-eEEec---cCC----HHH--hcc--CCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCC
Confidence 456899999999999985 54211 111 111 122 3333333322 2345556666666544 456
Q ss_pred CCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHH
Q 024528 160 EGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKD 197 (266)
Q Consensus 160 ~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~ 197 (266)
.+++|+|.|+.+.. .+-.+++.+|+++.+
T Consensus 83 ~~~aVfGlGds~Y~---------~fc~~~~~ld~~l~~ 111 (146)
T PRK09004 83 VRFAAIGIGSSEYD---------TFCGAIDKLEQLLKA 111 (146)
T ss_pred CEEEEEeecCCCHH---------HHhHHHHHHHHHHHH
Confidence 89999999998741 123556777777655
No 43
>PRK03995 hypothetical protein; Provisional
Probab=78.27 E-value=44 Score=30.02 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=74.0
Q ss_pred CCCEEEEEeCCCC-CCCCeEEecc--CCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCC----CCcccccCCC
Q 024528 40 RPNSILVISGHWE-TDVPTVNVVQ--QNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESG----FNHVNEDTKR 112 (266)
Q Consensus 40 ~Pd~IvviS~Hw~-~~~~~i~~~~--~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g----~d~~~~~~~~ 112 (266)
++|.||++|=|-- +..+.+|+.. ++ .--+|+|-|.+ =++.+|.+...+.+.+++.. ++ ++..
T Consensus 63 ~~d~iIflSRH~s~~~~p~LTvH~tGN~-~~a~~GG~p~~------la~a~P~~~~~lL~~l~~~~~~~~ye-vt~E--- 131 (267)
T PRK03995 63 KGEYIIFLSRHSSKAKKPSLTVHTPGNP-GEASYGGKPKE------LAIANPRLMTSLLRNLKKLAKELGFE-VTFE--- 131 (267)
T ss_pred CCCEEEEEecccCCCCCceEEEECCCCC-chhhcCCCCCc------cccCCHHHHHHHHHHHHHhcCCCCcE-EEEE---
Confidence 8999999999964 4556665542 33 33467788876 57788998888888885443 42 3321
Q ss_pred CccccchhhhhhhccCCCCCeEEEEecCC----CChHHHHHHHHHhcccc-----CCCeEEEEecCCcc
Q 024528 113 GLDHGAWVPLMLMYPEANIPVCQLSVQTR----KDGTHHYNMGKALAPLK-----DEGVLIIGSGSATH 172 (266)
Q Consensus 113 ~lDHG~~vPL~~l~p~~~iPvV~vs~~~~----~~~~~~~~lG~aL~~~~-----d~~v~iiaSG~lSH 172 (266)
.--||-. +.+.|.+=|=|-+. .+++.+-.+.+++-++. ++...+||-||. |
T Consensus 132 aTHHGPt--------~l~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~l~~~~~~~~~~~iGiGGg-H 191 (267)
T PRK03995 132 ATHHGPT--------ELKVPSVFVEIGSTEEEWKNERAGEILAEAVIEVLDSIEYEKFKPAIGIGGG-H 191 (267)
T ss_pred ccccCCC--------CCCCCeEEEEeCCCHHHhCCcHHHHHHHHHHHHHHhcccccCCCEEEEECCC-C
Confidence 1245532 46788888888443 34566667777766652 345677888887 6
No 44
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=74.32 E-value=25 Score=30.56 Aligned_cols=116 Identities=22% Similarity=0.402 Sum_probs=61.0
Q ss_pred cCCCCEEEEEeCCCCCCC-CeEEecc--CCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHh---CCCCcccccCC
Q 024528 38 TQRPNSILVISGHWETDV-PTVNVVQ--QNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTE---SGFNHVNEDTK 111 (266)
Q Consensus 38 ~~~Pd~IvviS~Hw~~~~-~~i~~~~--~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~---~g~d~~~~~~~ 111 (266)
..++|.||++|=|--.++ +.+++.. ++.. .+|+|-|.+ =.+.+|.+...+.+.+.+ .|++ ++...
T Consensus 10 ~~~~d~iIf~SrH~s~~~~p~LTvH~tGN~~~-a~~GG~p~~------la~a~P~~~~~~l~~l~~~~~e~y~-v~~Ea- 80 (213)
T PF04414_consen 10 FEDPDLIIFLSRHSSESGRPSLTVHTTGNFGE-AEYGGKPGE------LAPANPRLMKALLRALKKHAPEGYE-VSYEA- 80 (213)
T ss_dssp TS--SEEEEEEEEE-TT---EEEEE--EESS---TTSS-TTE------E-BB-HHHHHHHHHHHHHHGGCT-E-EEE---
T ss_pred cCCCCEEEEEeeccCCCCCceEEEeCCCCCCc-cccCCCCCc------cccCCHHHHHHHHHHHHHhccCCCE-EEEEe-
Confidence 568999999999965544 5555532 3333 778888876 456688888888877753 2664 44322
Q ss_pred CCccccchhhhhhhccCCCCCeEEEEecCC----CChHHHHHHHHHhcccc--C--C--CeEEEEecCCccc
Q 024528 112 RGLDHGAWVPLMLMYPEANIPVCQLSVQTR----KDGTHHYNMGKALAPLK--D--E--GVLIIGSGSATHN 173 (266)
Q Consensus 112 ~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~----~~~~~~~~lG~aL~~~~--d--~--~v~iiaSG~lSH~ 173 (266)
--|| |. +.++|.+=|=+-+. .+++-...+.++|-++. + . +..+||-||. |-
T Consensus 81 --THHG---Pt-----~~~~Ps~FvEIGSte~eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~GG~-HY 141 (213)
T PF04414_consen 81 --THHG---PT-----DLSVPSVFVEIGSTEEEWNDPDAAEAVARAVLEVLESDEKAECCPVAIGFGGG-HY 141 (213)
T ss_dssp --S-SS-------------SBEEEEEEEESHHHHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE-S--TT
T ss_pred --eccC---CC-----CCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhcccccccccceeEEecCc-cc
Confidence 2355 22 25788777777433 34555666666666653 1 2 2889999987 63
No 45
>PRK08105 flavodoxin; Provisional
Probab=72.24 E-value=20 Score=28.98 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCC---CChHHHHHHHHHhcc----ccC
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR---KDGTHHYNMGKALAP----LKD 159 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~---~~~~~~~~lG~aL~~----~~d 159 (266)
..++|++|.+.+++.|++ +.... ++- .-++ ...+..+|.+.+.+. -.|.....+=+.|.+ +.+
T Consensus 15 te~~A~~l~~~l~~~g~~-~~~~~---~~~--~~~~----~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~ 84 (149)
T PRK08105 15 ALLVAEEAEAILTAQGHE-VTLFE---DPE--LSDW----QPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPN 84 (149)
T ss_pred HHHHHHHHHHHHHhCCCc-eEEec---hhh--CCch----hcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCC
Confidence 456899999999999985 44211 111 1111 111123333333221 345444444444443 346
Q ss_pred CCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHH
Q 024528 160 EGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKD 197 (266)
Q Consensus 160 ~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~ 197 (266)
.+++|+|.|+.++. .+..++..+|+++.+
T Consensus 85 ~~~avfGlGds~Y~---------~fc~~~~~ld~~l~~ 113 (149)
T PRK08105 85 LRYGVIALGDSSYD---------NFCGAGKQFDALLQE 113 (149)
T ss_pred CEEEEEeeecCCHH---------HHHHHHHHHHHHHHH
Confidence 78999999999761 123456667776655
No 46
>PRK14866 hypothetical protein; Provisional
Probab=70.40 E-value=66 Score=31.14 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=72.2
Q ss_pred CCCEEEEEeCCCC-CCCCeEEeccC-CCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhC---CCCcccccCCCCc
Q 024528 40 RPNSILVISGHWE-TDVPTVNVVQQ-NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTES---GFNHVNEDTKRGL 114 (266)
Q Consensus 40 ~Pd~IvviS~Hw~-~~~~~i~~~~~-~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~---g~d~~~~~~~~~l 114 (266)
+||.||++|=|-- +..+.+|+... +...-+|+|-|.. -++.+|.+...+.+.+.+. |++ ++... -
T Consensus 69 ~~d~iIf~SRH~s~~~~p~LTvH~tGN~~~a~~GG~p~~------la~a~P~~~~~lL~~l~~~~~~~ye-vt~Ea---T 138 (451)
T PRK14866 69 DPDLLIFASRHSSVDTGPLLTAHFTGNFGPAEYGGEPGS------LAPAAPNAMKAVLEALAEHAPEGYD-VSMEC---T 138 (451)
T ss_pred CCCEEEEEecccCCCCCceEEEECCCCCChhhcCCCCCc------cccCCHHHHHHHHHHHHHhCcCCcE-EEEEc---c
Confidence 8999999999965 44566665431 2233457777775 5677888888888876433 453 43221 2
Q ss_pred cccchhhhhhhccCCCCCeEEEEecCC----CChHHHHHHHHHhcccc----CCCeEEEEecCCccc
Q 024528 115 DHGAWVPLMLMYPEANIPVCQLSVQTR----KDGTHHYNMGKALAPLK----DEGVLIIGSGSATHN 173 (266)
Q Consensus 115 DHG~~vPL~~l~p~~~iPvV~vs~~~~----~~~~~~~~lG~aL~~~~----d~~v~iiaSG~lSH~ 173 (266)
.||-. +.++|.+=|-+-+. .+++.+-.+.+++-++. ++...+||-||. |-
T Consensus 139 HHGPt--------~l~~Ps~FvEIGSte~eW~d~~a~~~vA~ail~~~~~~~~~~~~~iG~GGg-HY 196 (451)
T PRK14866 139 HHGPT--------DVGVPSLFVELGSTEKEWDDPDAARAVARAILDLRGVPPHTDRPLVGFGGG-HY 196 (451)
T ss_pred ccCCC--------CCCCceEEEEeCCCHHHhCCcHHHHHHHHHHHHHhcccccCCCEEEEeCCC-Cc
Confidence 45542 35788888877433 24566666777766653 234677799887 63
No 47
>PRK06703 flavodoxin; Provisional
Probab=66.68 E-value=27 Score=27.90 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCC---CChHHHHHHHHHhcc--ccCCC
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR---KDGTHHYNMGKALAP--LKDEG 161 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~---~~~~~~~~lG~aL~~--~~d~~ 161 (266)
...+|+.|++.+.+.|++ +....-...+... + .+...|-+..++. ..|.....+=+.|.+ +.+++
T Consensus 15 T~~iA~~ia~~l~~~g~~-v~~~~~~~~~~~~------l---~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~ 84 (151)
T PRK06703 15 TEDIADLIKVSLDAFDHE-VVLQEMDGMDAEE------L---LAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKK 84 (151)
T ss_pred HHHHHHHHHHHHHhcCCc-eEEEehhhCCHHH------H---hcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCE
Confidence 356889999999988884 4421111111110 1 1334444444332 235455555444543 45688
Q ss_pred eEEEEecCCc
Q 024528 162 VLIIGSGSAT 171 (266)
Q Consensus 162 v~iiaSG~lS 171 (266)
++++|||+.+
T Consensus 85 ~~vfg~g~~~ 94 (151)
T PRK06703 85 VAVFGSGDTA 94 (151)
T ss_pred EEEEccCCCC
Confidence 9999999875
No 48
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=63.24 E-value=35 Score=33.98 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=60.5
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccC-CCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccccc
Q 024528 31 AWKEQVFTQRPNSILVISGHWETDVPTVNVVQQ-NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNED 109 (266)
Q Consensus 31 ~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~-~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~ 109 (266)
+..+++++.++|++|+++++|.-...++..... |.++ .||++. +.||...|+..+ ..+++.|+ |..
T Consensus 68 ~~aekFk~e~Vd~~I~vt~cw~fG~Et~d~~~~~Pvll---Wg~~dp------erPGav~L~A~l-aa~~Q~Gi-p~~-- 134 (588)
T PRK10991 68 ACEEKFSSENVGLTITVTPCWCYGSETIDMDPTRPKAI---WGFNGT------ERPGAVYLAAAL-AAHSQKGI-PAF-- 134 (588)
T ss_pred HHHHHHhhcCCCEEEEecCcccchhHHHhcCCCCCEEE---eCCCCC------CCCcHHHHHHHH-HHHHhcCC-CeE--
Confidence 334455567899999999999654333322222 3343 244442 457777776433 34456666 332
Q ss_pred CCCCccccchhhhhhhcc----CCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEEEEecC
Q 024528 110 TKRGLDHGAWVPLMLMYP----EANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSGS 169 (266)
Q Consensus 110 ~~~~lDHG~~vPL~~l~p----~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~iiaSG~ 169 (266)
+++. +.+=+-||=.+ .-...+..+-+.+++.+|.++++.||+=.
T Consensus 135 --------------~IyGh~vqd~dd~~i~~dv--~ekLl~FaRAa~aV~~LRg~syl~IG~rp 182 (588)
T PRK10991 135 --------------SIYGHDVQDADDTSIPADV--EEKLLRFARAGLAVASMKGKSYLSIGGVS 182 (588)
T ss_pred --------------EEeCCCccccccccchHHH--HHHHHHHHHHHHHHHHhcCCeEEEECCcc
Confidence 1111 11101000000 01234677888889999999999999753
No 49
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=59.00 E-value=35 Score=31.46 Aligned_cols=90 Identities=17% Similarity=0.205 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeC--CCCCC-----CCeEEeccCCCcccCCCCCc-------------------cccc
Q 024528 25 ARHFLKAWKEQVFTQRPNSILVISG--HWETD-----VPTVNVVQQNDVIYDFYNFP-------------------EQMY 78 (266)
Q Consensus 25 ~~~~~~~l~~~i~~~~Pd~IvviS~--Hw~~~-----~~~i~~~~~~~~~~Df~gfp-------------------~~~y 78 (266)
+.+++++|.+.+++..|+.+||.-. ..... ...|.......+.++.++-. ...+
T Consensus 189 m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~g~~~~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl 268 (315)
T TIGR01370 189 MIAFVCEIAAYARAQNPQFVIIPQNGEELLRDDHGGLAATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVL 268 (315)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecCchhhhhccccchhhhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEE
Confidence 4566777777777788999887633 33321 12333323334444432211 1235
Q ss_pred cccCCCCC-----CHHHHHHHHHHHHhCCCCcccccCCCCc
Q 024528 79 KLKYPAPG-----APELAKRVKQLLTESGFNHVNEDTKRGL 114 (266)
Q Consensus 79 ~~~y~~~g-----~~eLa~~i~~~l~~~g~d~~~~~~~~~l 114 (266)
-+.|-.+| +.++++.+.+.+++.||-|-..+..+.+
T Consensus 269 ~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~pYVsd~~l~l 309 (315)
T TIGR01370 269 TVDYVDDGTKTNENPARMKDAAEKARAAGLIPYVAESDLEL 309 (315)
T ss_pred EEEecCCcccchhhHHHHHHHHHHHHHcCCeeeecCchhcc
Confidence 57787777 5688899999999999843323334444
No 50
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=58.87 E-value=44 Score=26.06 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEe-cCCCCh---H-HHHHHHHHh------cc
Q 024528 88 PELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSV-QTRKDG---T-HHYNMGKAL------AP 156 (266)
Q Consensus 88 ~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~-~~~~~~---~-~~~~lG~aL------~~ 156 (266)
..+|++|.+.+++.|++ +....-...|.. +.-+ .+.+.=|+-++. +.+..| . ...++-... ..
T Consensus 11 e~~A~~ia~~l~~~g~~-~~~~~~~~~~~~----~~~~-~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
T PF00258_consen 11 EKMAEAIAEGLRERGVE-VRVVDLDDFDDS----PSDL-SEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPD 84 (143)
T ss_dssp HHHHHHHHHHHHHTTSE-EEEEEGGGSCHH----HHHH-CTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSH
T ss_pred HHHHHHHHHHHHHcCCc-eeeechhhhhhh----hhhh-hhhceeeEeecccCCCcchhhhhhhhhhccccccccccccc
Confidence 46899999999999984 543221222221 1111 122222333332 222222 1 344555444 23
Q ss_pred ccCCCeEEEEecCCccccccccCCCCCcchhHHHHHHHHHH
Q 024528 157 LKDEGVLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKD 197 (266)
Q Consensus 157 ~~d~~v~iiaSG~lSH~l~~~~~~~~~~~~~~~eFD~~v~~ 197 (266)
+...+++|+|+|+.+-.. +-..++.+|+++.+
T Consensus 85 l~~~~~avfg~Gd~~~~~---------f~~~~k~l~~~l~~ 116 (143)
T PF00258_consen 85 LKGKKYAVFGLGDSGYGG---------FCAAAKKLDERLEE 116 (143)
T ss_dssp CTTCEEEEEEEEETTSST---------TTHHHHHHHHHHHH
T ss_pred cccceeeeeecCCccchh---------hhhHHHHHHHHHHH
Confidence 457899999999985431 23556777777665
No 51
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.10 E-value=16 Score=30.33 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHH-HhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhcccc--CCCeE
Q 024528 87 APELAKRVKQLL-TESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLK--DEGVL 163 (266)
Q Consensus 87 ~~eLa~~i~~~l-~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~--d~~v~ 163 (266)
+-+=+-.+++.+ .+.|.| +-. .|| . .-.++....++|||.|-+. .+++-++|.+++ .++|+
T Consensus 18 ~~e~~v~~a~~~~~~~g~d-ViI--sRG----~--ta~~lr~~~~iPVV~I~~s-------~~Dil~al~~a~~~~~~Ia 81 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGAD-VII--SRG----G--TAELLRKHVSIPVVEIPIS-------GFDILRALAKAKKYGPKIA 81 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-S-EEE--EEH----H--HHHHHHCC-SS-EEEE----------HHHHHHHHHHCCCCTSEEE
T ss_pred cHHHHHHHHHHhhHhcCCe-EEE--ECC----H--HHHHHHHhCCCCEEEECCC-------HhHHHHHHHHHHhcCCcEE
Confidence 444455566666 677886 432 232 2 1344555568999999985 589999999997 47899
Q ss_pred EEEecCCccccccc
Q 024528 164 IIGSGSATHNLRAL 177 (266)
Q Consensus 164 iiaSG~lSH~l~~~ 177 (266)
||+.......+...
T Consensus 82 vv~~~~~~~~~~~~ 95 (176)
T PF06506_consen 82 VVGYPNIIPGLESI 95 (176)
T ss_dssp EEEESS-SCCHHHH
T ss_pred EEecccccHHHHHH
Confidence 99999887655433
No 52
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=54.88 E-value=35 Score=33.86 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=61.2
Q ss_pred HHHHHhhcCCCCEEEEEeCCCCCCCCeEEecc-CCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCccccc
Q 024528 31 AWKEQVFTQRPNSILVISGHWETDVPTVNVVQ-QNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNED 109 (266)
Q Consensus 31 ~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~-~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~ 109 (266)
+-.+++++..+|++|+++|+|.....++.... .|..+ .||++. +.||..-|+..+..+. +.|+ +...
T Consensus 64 ~~a~kf~~~~Vd~tI~vtpcWcygset~dm~~~~P~al---Wgfn~p------erpGaVyLaA~lAaha-Q~Gl-p~f~- 131 (584)
T cd03556 64 ACAEKFTRENVGATITVTPCWCYGSETMDMDPNTPKAI---WGFNGT------ERPGAVYLAAVLAGHA-QKGI-PAFG- 131 (584)
T ss_pred HHHHHHhhcCCCEEEEecceecCcHHHHhhcccCCEEE---EcCCCC------CCCchHHHHhhhhHHh-hCCC-CceE-
Confidence 33455566789999999999976544333332 24443 345443 5589988998665444 5666 3211
Q ss_pred CCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEEEEec
Q 024528 110 TKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSG 168 (266)
Q Consensus 110 ~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~iiaSG 168 (266)
-+|-| + .+.+=+-||-.+ .-...+..+-+.|++.++.++++.|||=
T Consensus 132 -IyG~~--v--------qd~~d~~iP~DV--~eKll~faRAa~AV~~Lkgksyl~IG~~ 177 (584)
T cd03556 132 -IYGHD--V--------QEADDTTIPEDV--KEKILRFARAAIAVASMRGKSYLSIGSV 177 (584)
T ss_pred -EecCC--c--------cccccccCcHHH--HHHHHHHHHHHHHHHHhcCCeEEEECCc
Confidence 11110 0 011111111001 0112345566666778889999999873
No 53
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=51.80 E-value=22 Score=32.20 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhc------c-----CCCCCeEEEEe
Q 024528 91 AKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMY------P-----EANIPVCQLSV 138 (266)
Q Consensus 91 a~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~------p-----~~~iPvV~vs~ 138 (266)
.+.+.+.|++.++ +. .|...+.++|++||+.=-. | ..+.||||+..
T Consensus 184 ~r~~~kaLk~g~~--v~il~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~~~ 242 (306)
T PRK08733 184 LRATIKHLKRGGF--LWYAPDQDMRGKDTVFVPFFGHPASTITATHQLARLTGCAVVPYFH 242 (306)
T ss_pred HHHHHHHHhCCCe--EEEeCCCCCCCCCcEEeCCCCCchhHHHHHHHHHHHhCCeEEEEEE
Confidence 6778888887775 33 3555556889998843211 1 24788888886
No 54
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=51.34 E-value=34 Score=29.50 Aligned_cols=91 Identities=15% Similarity=0.299 Sum_probs=55.0
Q ss_pred HHHHHHHHhh--cCCCCEEEEEeCCCCCCC---------CeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHH
Q 024528 28 FLKAWKEQVF--TQRPNSILVISGHWETDV---------PTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQ 96 (266)
Q Consensus 28 ~~~~l~~~i~--~~~Pd~IvviS~Hw~~~~---------~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~ 96 (266)
+.+++.+.+. ..+...+|+++.|-++.. +.|+++ +- +...-++++.+.+.+
T Consensus 115 yh~~l~~~l~~~~~~~g~~illd~HS~~~~~~~~~~~~~~~~~lG-------~~-----------~~~s~~~~l~~~~~~ 176 (222)
T PF05013_consen 115 YHRALAALLERLRARFGKVILLDCHSMPPVPPGREDDPRPDIVLG-------TL-----------HGPSCDPELVDALAE 176 (222)
T ss_dssp HHHHHHHHHHHHHHCCS-EEEEEEEEE-TCCCCCCT----SECEE-------CC-----------TTTSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCceEEEEeccCCCcccccccCCCCCeEEE-------cC-----------CCCCCCHHHHHHHHH
Confidence 3444444443 355778899999965432 123222 21 121227899999999
Q ss_pred HHH-hCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC
Q 024528 97 LLT-ESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT 140 (266)
Q Consensus 97 ~l~-~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~ 140 (266)
.++ +.|+. +..+..+. |..++-++=.|+..++.|||-+|.
T Consensus 177 ~l~~~~g~~-v~~N~Py~---Gg~~~~~~~~~~~~v~~iqiEi~~ 217 (222)
T PF05013_consen 177 ALEASDGYS-VRVNEPYS---GGYITRYYGRPARGVHAIQIEINR 217 (222)
T ss_dssp HCC-CTTS--EEETSS-----GGHCCCHHHCCCCTEEEEEEEEEG
T ss_pred HhhcccCcE-EeeCCCCC---CcchhcEEecCCCCceEEEEEEEH
Confidence 998 77884 76655443 455555677788899999999974
No 55
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=50.10 E-value=85 Score=31.33 Aligned_cols=109 Identities=21% Similarity=0.308 Sum_probs=60.8
Q ss_pred HHHHhhcCCCCEEEEEeCCCCCCCCeEEeccC-CCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccC
Q 024528 32 WKEQVFTQRPNSILVISGHWETDVPTVNVVQQ-NDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDT 110 (266)
Q Consensus 32 l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~-~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~ 110 (266)
-.+++++..+|.+|+++|+|.....++..... |..+ .||+.. +.||..-|+..+..+. +.|+ +...
T Consensus 68 ~a~kfk~~~Vd~tItvtpcWcygseT~dm~p~~P~al---Wgfn~p------erpGaVyLaA~lAaha-Q~Gl-p~f~-- 134 (587)
T TIGR01089 68 CAEKFSRENVGLTITVTPCWCYGSETIDMDPHRPKAI---WGFNGT------ERPGAVYLAAALAGHS-QKGL-PAFS-- 134 (587)
T ss_pred HHHHHhhcCCCEEEEecceecCcHhhhhcCCCCCEEE---EcCCCC------CCCchHHHHHhhhHHh-hCCC-CeeE--
Confidence 34455567899999999999765544433332 4443 345543 5589988987776554 5666 3221
Q ss_pred CCCccccchhhhhhhccC---CCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEEEEec
Q 024528 111 KRGLDHGAWVPLMLMYPE---ANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGSG 168 (266)
Q Consensus 111 ~~~lDHG~~vPL~~l~p~---~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~iiaSG 168 (266)
-+|-| | .+ ..||= -+ .-...+..+-+.|++.++.++++.|||=
T Consensus 135 IyG~~----v------qd~~d~~ip~---dV--~eKll~faRAa~AV~~Lkgksyl~IG~~ 180 (587)
T TIGR01089 135 IYGHD----V------QDADDTSIPE---DV--EEKLLRFARAGLAVASMRGKSYLSLGSV 180 (587)
T ss_pred EeCCC----c------cccccccCcH---HH--HHHHHHHHHHHHHHHHhccCeEEEECCc
Confidence 01100 0 01 11110 00 0011345556666777889999999873
No 56
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=48.23 E-value=1.4e+02 Score=27.55 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecCCCChHHHHHHHHHhccccCCCeE
Q 024528 85 PGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVL 163 (266)
Q Consensus 85 ~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~ 163 (266)
+.+.+...++++.+.+.|||.+-.. +...-.-.|+-+..+-.. ..|.+.....+...+|-...+--..|..+.+.|+.
T Consensus 23 ~~~~~~~~~~a~~AE~~Gfd~~~~~-~~~~~~~p~~~laalA~~T~rI~l~~~v~~~~~~P~~~A~~~AtLD~lS~GR~~ 101 (346)
T TIGR03565 23 AVDHGYLKQIAQAADRLGYTGVLLP-TGRSCEDSWVTASALAPVTERLKFLVAVRPGLMSPTVAARMAATLDRLSGGRLL 101 (346)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHhcCeeEEEEEecCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 3467888899999999999833222 111112334444444444 56777655444456777777766777777788888
Q ss_pred E-EEecCCcc
Q 024528 164 I-IGSGSATH 172 (266)
Q Consensus 164 i-iaSG~lSH 172 (266)
+ ||+|..-.
T Consensus 102 lgvg~G~~~~ 111 (346)
T TIGR03565 102 INVVTGGDPV 111 (346)
T ss_pred EEEeCCCCHH
Confidence 8 89987543
No 57
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=47.75 E-value=1.1e+02 Score=24.43 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCC--ccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEE
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRG--LDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLI 164 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~--lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~i 164 (266)
+..++..+.+.+.+.|+ .++.....| .|=..-==|.++..+.+..+|-+.+-..-++++..+.-+..++- +-|++
T Consensus 10 SG~~~~~~~~~~~~~g~-g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a~~~--KPVv~ 86 (138)
T PF13607_consen 10 SGALGTAILDWAQDRGI-GFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRAARR--KPVVV 86 (138)
T ss_dssp -HHHHHHHHHHHHHTT--EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHHCCC--S-EEE
T ss_pred CHHHHHHHHHHHHHcCC-CeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHHhcC--CCEEE
Confidence 46688889999999988 455322222 23233333667777889999999997777887777766666653 78888
Q ss_pred EEecC
Q 024528 165 IGSGS 169 (266)
Q Consensus 165 iaSG~ 169 (266)
+=+|-
T Consensus 87 lk~Gr 91 (138)
T PF13607_consen 87 LKAGR 91 (138)
T ss_dssp EE---
T ss_pred EeCCC
Confidence 88886
No 58
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=46.81 E-value=68 Score=32.12 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC---CCChHHHHHHHHHhcc-----ccC
Q 024528 88 PELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT---RKDGTHHYNMGKALAP-----LKD 159 (266)
Q Consensus 88 ~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~---~~~~~~~~~lG~aL~~-----~~d 159 (266)
..+|++|.+.+.+.|++ +.... +|. +-+-. . .+.++|-+.+.+ +-.|.....|=+.|.+ +.+
T Consensus 73 e~~A~~l~~~l~~~g~~-~~v~~---~~d--~~~~~--l--~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~~~L~~ 142 (597)
T TIGR01931 73 RRLAKRLAEKLEAAGFS-VRLSS---ADD--YKFKQ--L--KKERLLLLVISTQGEGEPPEEAISFHKFLHSKKAPKLEN 142 (597)
T ss_pred HHHHHHHHHHHHhCCCc-cEEec---hHH--CCHhh--c--ccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCCcccCC
Confidence 44899999999999984 44211 111 00100 1 123333232222 2456666666666643 346
Q ss_pred CCeEEEEecCCcc
Q 024528 160 EGVLIIGSGSATH 172 (266)
Q Consensus 160 ~~v~iiaSG~lSH 172 (266)
.+++|+|.|+.|.
T Consensus 143 ~~~aVfGLGDssY 155 (597)
T TIGR01931 143 LRYSVLGLGDSSY 155 (597)
T ss_pred CeEEEEeCCcCCH
Confidence 7899999999986
No 59
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=44.55 E-value=1.4e+02 Score=25.66 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCCCe---EEeccCCCcccCCCCC-ccccccccCCCCCCHHH-----HHHHHHHHH
Q 024528 29 LKAWKEQVFTQRPNSILVISGHWETDVPT---VNVVQQNDVIYDFYNF-PEQMYKLKYPAPGAPEL-----AKRVKQLLT 99 (266)
Q Consensus 29 ~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~---i~~~~~~~~~~Df~gf-p~~~y~~~y~~~g~~eL-----a~~i~~~l~ 99 (266)
.+.+.+.+.+.+||.||.+.=|--..... +.++.....+-|-.|. |.. -.+ ...|...+ .++|++.++
T Consensus 49 ~~~l~~~~~~~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~-~~I--~~~gp~~~~t~lp~~~l~~~l~ 125 (209)
T PRK13193 49 EDLIVTKIREMKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKG-EKI--DPLGQDGIFTNIPVEDLVDLLN 125 (209)
T ss_pred HHHHHHHHHHHCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCC-Ccc--cCCCcceeecCCCHHHHHHHHH
Confidence 33444555667999999997765443322 2233222233444442 211 001 11122222 578899999
Q ss_pred hCCCCcccccC
Q 024528 100 ESGFNHVNEDT 110 (266)
Q Consensus 100 ~~g~d~~~~~~ 110 (266)
++|+ |+..+.
T Consensus 126 ~~Gi-p~~~S~ 135 (209)
T PRK13193 126 ENGI-PAELSL 135 (209)
T ss_pred hcCC-CceEec
Confidence 9999 565443
No 60
>PRK07308 flavodoxin; Validated
Probab=41.38 E-value=1.2e+02 Score=23.79 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCC---CChHHHHHHHHHhccc--cCCC
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR---KDGTHHYNMGKALAPL--KDEG 161 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~---~~~~~~~~lG~aL~~~--~d~~ 161 (266)
..++|+.|.+.+.+.|++ +....-...+. -. + .+...|-+..++. .-|.....+=+.|.+. .+++
T Consensus 15 Te~iA~~ia~~l~~~g~~-~~~~~~~~~~~-----~~-l---~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~ 84 (146)
T PRK07308 15 TEEIADIVADKLRELGHD-VDVDECTTVDA-----SD-F---EDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKI 84 (146)
T ss_pred HHHHHHHHHHHHHhCCCc-eEEEecccCCH-----hH-h---ccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCE
Confidence 345799999999988884 43211111111 11 1 1234444444332 3344455554445443 4788
Q ss_pred eEEEEecCC
Q 024528 162 VLIIGSGSA 170 (266)
Q Consensus 162 v~iiaSG~l 170 (266)
++++|||+.
T Consensus 85 ~~vfG~Gd~ 93 (146)
T PRK07308 85 YGVVGSGDT 93 (146)
T ss_pred EEEEeeCCC
Confidence 999999995
No 61
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=41.03 E-value=2.1e+02 Score=24.58 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCC-CCC----CCCeEEeccCCCcccCCCCCccccccccCCCCCCHHH-----HHHHH
Q 024528 26 RHFLKAWKEQVFTQRPNSILVISGH-WET----DVPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPEL-----AKRVK 95 (266)
Q Consensus 26 ~~~~~~l~~~i~~~~Pd~IvviS~H-w~~----~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eL-----a~~i~ 95 (266)
.+..+.+.+.+.+.+||+++.+.=- .-+ ...+|++.+ --+-|-.|.-.. +..-...|..+. .++++
T Consensus 46 ~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~iT~ERVAINv~D--arIpDN~G~qpi--DepI~~dGpaAYfstlPvkamv 121 (207)
T COG2039 46 KKSIDALVQAIAEVQPDLVLAIGQAGGRTKITPERVAINVDD--ARIPDNAGNQPI--DEPIDPDGPAAYFSTLPVKAMV 121 (207)
T ss_pred HHHHHHHHHHHHhhCCCeEEEecccCCCCcCChhheeecccc--ccCCCCCCCCcC--CCccCCCCchhhhhcCcHHHHH
Confidence 4556667777888999999999531 111 123444443 236665553110 111122222221 47799
Q ss_pred HHHHhCCCCcccccCCC
Q 024528 96 QLLTESGFNHVNEDTKR 112 (266)
Q Consensus 96 ~~l~~~g~d~~~~~~~~ 112 (266)
+.++++|+ |+..+.+-
T Consensus 122 ~~~~~~Gi-PA~vS~sA 137 (207)
T COG2039 122 QAIREAGI-PASVSNSA 137 (207)
T ss_pred HHHHHcCC-Chhhhccc
Confidence 99999999 77766544
No 62
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=38.93 E-value=97 Score=31.13 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC-CCChHHHHHHHHHhc-----cccCC
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT-RKDGTHHYNMGKALA-----PLKDE 160 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~-~~~~~~~~~lG~aL~-----~~~d~ 160 (266)
..++|++|.+.+++.|++ +.... +| -.-+ .-+ ++.+.=|+-+|..+ +-.|.....|=+.|. .+.+.
T Consensus 75 ae~lA~~la~~l~~~g~~-~~v~~---~~--d~~~-~~L-~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~~~~L~~~ 146 (600)
T PRK10953 75 ARRVAEQLRDDLLAAKLN-VNLVN---AG--DYKF-KQI-AQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENT 146 (600)
T ss_pred HHHHHHHHHHHHHhCCCC-cEEec---hH--hCCH-hHh-ccCCeEEEEECCCCCCCCChhHHHHHHHHhhCcCcCCCCC
Confidence 455999999999999995 43211 11 1001 111 12222123333321 245666655555553 24467
Q ss_pred CeEEEEecCCcc
Q 024528 161 GVLIIGSGSATH 172 (266)
Q Consensus 161 ~v~iiaSG~lSH 172 (266)
+++|+|.|+.|.
T Consensus 147 ~faVfGLGDssY 158 (600)
T PRK10953 147 AFAVFGLGDTSY 158 (600)
T ss_pred EEEEEccCccCH
Confidence 999999999985
No 63
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=38.19 E-value=90 Score=28.24 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhhc------c-----CCCCCeEEEEe
Q 024528 89 ELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLMY------P-----EANIPVCQLSV 138 (266)
Q Consensus 89 eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l~------p-----~~~iPvV~vs~ 138 (266)
+-.+.+.+.|++.++ +. .|...+-+.|++||+.=-- | ..+.||||+.+
T Consensus 181 ~~~r~ilk~Lk~g~~--v~il~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~~~ 241 (310)
T PRK05646 181 EDVRGMLKLLRAGRA--IWYAPDQDYGAKQSIFVPLFGIPAATVTATTKFARLGRARVIPFTQ 241 (310)
T ss_pred hhHHHHHHHHhCCCe--EEEeCCCCCCCCCCEEecCCCCcchhhhHHHHHHHhhCCcEEEEEE
Confidence 346778888877664 34 3444455779999843211 1 23788888887
No 64
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=38.00 E-value=96 Score=29.81 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEe
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSV 138 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~ 138 (266)
..+++.+|++.|+++|+|.+-...+=|.=|=+-.-+.--.....||||+|..
T Consensus 321 a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 321 SKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 3478999999999999984434445555554433222222347899999986
No 65
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=35.34 E-value=32 Score=25.71 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=29.0
Q ss_pred cccCCC--CCccccccccCCCCCCHHHHHHHHHHHHhCCCCcccccC
Q 024528 66 VIYDFY--NFPEQMYKLKYPAPGAPELAKRVKQLLTESGFNHVNEDT 110 (266)
Q Consensus 66 ~~~Df~--gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~ 110 (266)
+.||.. .-|.. -+.|..++|++|++.+++.|+ |+..+.
T Consensus 13 l~Yd~~~~~AP~v------vA~G~G~iAe~II~~Ake~~V-pi~edp 52 (92)
T COG2257 13 LAYDEGKDKAPKV------VASGKGEIAEKIIEKAKEHGV-PIQEDP 52 (92)
T ss_pred eeeccCCCCCCEE------EeecchHHHHHHHHHHHHcCC-CcccCH
Confidence 446642 24654 678999999999999999999 776543
No 66
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=35.06 E-value=62 Score=24.93 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=36.8
Q ss_pred HHHHHHHhhc-CCCCEEEEEeCCCCCCCC------eEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhC
Q 024528 29 LKAWKEQVFT-QRPNSILVISGHWETDVP------TVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTES 101 (266)
Q Consensus 29 ~~~l~~~i~~-~~Pd~IvviS~Hw~~~~~------~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~ 101 (266)
++.+.+.++. .=|+++|++-..|+...+ -+..+.++-+.-|- |...|-..|+..||+ ++.-+.+.
T Consensus 1 l~al~~aLk~~~~p~~~v~liTDwQd~R~~ARYa~ll~~gk~~llt~dA-------FGPafG~~G~~ALaE-Lv~wl~~~ 72 (113)
T PF11432_consen 1 LQALKAALKGLRFPEAKVYLITDWQDQRPQARYALLLRGGKEPLLTPDA-------FGPAFGPEGERALAE-LVRWLQER 72 (113)
T ss_dssp HHHHHHHHTT---TT-EEEEEEE--SSCCC--EEEEEE-SS-EEEEEEE-------ESTTS-TTHHHHHHH-HHHHHHHT
T ss_pred ChhHHHHHhcCCCCCceEEEEeccccchhhhhhhhheecCCcccccccc-------cCcccCccHHHHHHH-HHHHHHHc
Confidence 3455666653 348999988888987654 23334333333332 223467788999987 56677788
Q ss_pred CCC
Q 024528 102 GFN 104 (266)
Q Consensus 102 g~d 104 (266)
|++
T Consensus 73 G~~ 75 (113)
T PF11432_consen 73 GAR 75 (113)
T ss_dssp T-E
T ss_pred CCc
Confidence 873
No 67
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=34.51 E-value=51 Score=18.42 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCC
Q 024528 84 APGAPELAKRVKQLLTESGFN 104 (266)
Q Consensus 84 ~~g~~eLa~~i~~~l~~~g~d 104 (266)
-.|+++.|.++.+.+++.|+.
T Consensus 13 ~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 13 KAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HCCCHHHHHHHHHHHHHhCCC
Confidence 467899999999999998874
No 68
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=34.35 E-value=2.3e+02 Score=26.47 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEE
Q 024528 86 GAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLI 164 (266)
Q Consensus 86 g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~i 164 (266)
.+.+...++++.+.+.|||.+-..... .-.-.|+-+..+-.. ..|.+.....+...+|....+--..|..+.+.|+.+
T Consensus 25 ~~~~~~~~~a~~AE~~Gfd~~~~~~~~-~~~dp~~~laalAa~T~ri~l~~av~p~~~~P~~~A~~~AtLD~lS~GR~~l 103 (378)
T PRK00719 25 VDHGYLQQIAQAADRLGYTGVLIPTGR-SCEDAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGRLLI 103 (378)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC-CCCCHHHHHHHHHHHcCeeEEEEEEeCCCcCHHHHHHHHHHHHHHcCCCEEE
Confidence 367788889999999999833222110 011233333334344 567776554444577877777777787777777666
Q ss_pred -EEecCCccccc
Q 024528 165 -IGSGSATHNLR 175 (266)
Q Consensus 165 -iaSG~lSH~l~ 175 (266)
||+|...+...
T Consensus 104 gig~G~~~~e~~ 115 (378)
T PRK00719 104 NLVTGGDPAELA 115 (378)
T ss_pred EEecCCCHHHHH
Confidence 88887765443
No 69
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=32.63 E-value=2e+02 Score=25.07 Aligned_cols=79 Identities=6% Similarity=0.035 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCC---eEEeccCC---CcccCCCCC-ccccccccCCCCCCHH----H-HHHHH
Q 024528 28 FLKAWKEQVFTQRPNSILVISGHWETDVP---TVNVVQQN---DVIYDFYNF-PEQMYKLKYPAPGAPE----L-AKRVK 95 (266)
Q Consensus 28 ~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~---~i~~~~~~---~~~~Df~gf-p~~~y~~~y~~~g~~e----L-a~~i~ 95 (266)
..+.+.+.+.+.+||+||.+.=+.-.... .+.++... ..+-|-.|. |... .+ ...|... | .++|+
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~-~I--~~~gp~ay~stLpv~~iv 125 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGE-PT--DPAGPVAYHATVPVRAMV 125 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCCC-cc--cCCCcceeecCCCHHHHH
Confidence 34455555667899999999765433322 22222211 113443332 2110 00 0111111 1 57889
Q ss_pred HHHHhCCCCcccccC
Q 024528 96 QLLTESGFNHVNEDT 110 (266)
Q Consensus 96 ~~l~~~g~d~~~~~~ 110 (266)
+.++++|+ |+..+.
T Consensus 126 ~~l~~~gi-pa~vS~ 139 (222)
T PRK13195 126 LAMRKAGV-PADVSD 139 (222)
T ss_pred HHHHhcCC-CceEec
Confidence 99999999 665443
No 70
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=32.10 E-value=1.6e+02 Score=25.87 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=40.9
Q ss_pred CCCCHHH-HHHHHHHHHhCCCCccccc----CCCCccccchhhhhhhccCCCCCeEEEEecCCCChH---HHHH-HHHHh
Q 024528 84 APGAPEL-AKRVKQLLTESGFNHVNED----TKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGT---HHYN-MGKAL 154 (266)
Q Consensus 84 ~~g~~eL-a~~i~~~l~~~g~d~~~~~----~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~---~~~~-lG~aL 154 (266)
=||||+| ..+-.+.++++.+ +... .+..+.+...-+ ++.+ +..++.+..+..-+.+ .+|+ .-+.+
T Consensus 12 GPGdp~LlTlkA~~~L~~adv--i~~p~~~~~~~s~a~~i~~~--~~~~--~~~~~~l~fpm~~~~~~~~~~~~~~~~~i 85 (238)
T PRK05948 12 GPGDPELITLKGLRLLQSAPV--VAFPAGLAGQPGLAEQIIAP--WLSP--QQIKLPLYFPYVQDEEQLEQAWQAAADQV 85 (238)
T ss_pred cCCChHHhHHHHHHHHhhCCE--EEEeCCCCCchhHHHHHHHH--HcCC--CcEEEEecCCccCChHHHHHHHHHHHHHH
Confidence 3789998 5556677777764 2221 112233333322 2222 2345555444333322 2322 22333
Q ss_pred cc-cc-CCCeEEEEecCCcc
Q 024528 155 AP-LK-DEGVLIIGSGSATH 172 (266)
Q Consensus 155 ~~-~~-d~~v~iiaSG~lSH 172 (266)
.+ +. .++|+++.+||-+=
T Consensus 86 ~~~~~~g~~v~~l~~GDp~~ 105 (238)
T PRK05948 86 WHYLEQGEDVAFACEGDVSF 105 (238)
T ss_pred HHHHHcCCeEEEEeCCChHH
Confidence 33 22 47899999999643
No 71
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=31.42 E-value=46 Score=27.42 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=20.6
Q ss_pred HHHHHHHhcccc-CCCeEEEEecCCcc
Q 024528 147 HYNMGKALAPLK-DEGVLIIGSGSATH 172 (266)
Q Consensus 147 ~~~lG~aL~~~~-d~~v~iiaSG~lSH 172 (266)
.-++|+.|+..+ +++|+|||||=+.+
T Consensus 44 ~~~~~~~l~~~~~~~~vLVLGTgEfMy 70 (155)
T PF12500_consen 44 LQALAARLAAKRPGERVLVLGTGEFMY 70 (155)
T ss_pred HHHHHHHHHhhcCCCcEEEEccchHHH
Confidence 457777787766 48999999998765
No 72
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.25 E-value=16 Score=28.83 Aligned_cols=19 Identities=42% Similarity=0.739 Sum_probs=14.9
Q ss_pred hccccCCCeEEEEecCCcc
Q 024528 154 LAPLKDEGVLIIGSGSATH 172 (266)
Q Consensus 154 L~~~~d~~v~iiaSG~lSH 172 (266)
+..+.+++|+|||+|+.+=
T Consensus 7 ~~~l~~~~vlviGaGg~ar 25 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAAR 25 (135)
T ss_dssp HSTGTTSEEEEESSSHHHH
T ss_pred cCCcCCCEEEEECCHHHHH
Confidence 3456689999999999754
No 73
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.24 E-value=96 Score=28.25 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.7
Q ss_pred HHhhcCCCCEEEEEeC
Q 024528 34 EQVFTQRPNSILVISG 49 (266)
Q Consensus 34 ~~i~~~~Pd~IvviS~ 49 (266)
+.+.+.+||+|||.|-
T Consensus 226 EAliaa~PDvivm~~r 241 (300)
T COG4558 226 EALIAANPDVIVMMSR 241 (300)
T ss_pred HHHhhcCCCEEEEecC
Confidence 4456889999999875
No 74
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=29.94 E-value=63 Score=21.14 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=15.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEeC
Q 024528 28 FLKAWKEQVFTQRPNSILVISG 49 (266)
Q Consensus 28 ~~~~l~~~i~~~~Pd~IvviS~ 49 (266)
-+.++.+.+++..|++.|+++.
T Consensus 28 e~~~l~~~I~~~Dp~AFi~v~~ 49 (55)
T PF10035_consen 28 ELPKLKKIIKEIDPKAFISVSD 49 (55)
T ss_dssp HHHHHHHHHHCC-TT-EEEE--
T ss_pred HHHHHHHHHHHhCCCEEEEEEc
Confidence 3667888888999999999975
No 75
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=29.89 E-value=3.3e+02 Score=22.73 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCe---EEeccCCCcccCCCCCcccccccc------CCCCCCHHHHHHHHHHH
Q 024528 28 FLKAWKEQVFTQRPNSILVISGHWETDVPT---VNVVQQNDVIYDFYNFPEQMYKLK------YPAPGAPELAKRVKQLL 98 (266)
Q Consensus 28 ~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~---i~~~~~~~~~~Df~gfp~~~y~~~------y~~~g~~eLa~~i~~~l 98 (266)
..+.+.+.+.+.+||+||.++-|-...... +..+......-|-.|+....-.+. |...-+ .+++++.+
T Consensus 48 ~~~~~~~~~~~~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~lp---~~~l~~~l 124 (194)
T cd00501 48 AVEVLPELIEEHKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTLP---VKAIVKAL 124 (194)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCCCCCeeeecCC---HHHHHHHH
Confidence 334444445567999999998886544332 222222222334444311110110 111112 57888999
Q ss_pred HhCCCCcccccCCCC---ccccchhhhhhhccC-CCCCeEEEEec
Q 024528 99 TESGFNHVNEDTKRG---LDHGAWVPLMLMYPE-ANIPVCQLSVQ 139 (266)
Q Consensus 99 ~~~g~d~~~~~~~~~---lDHG~~vPL~~l~p~-~~iPvV~vs~~ 139 (266)
+++|+ ++..+.+-| =++-.+.-|+..... .++|+..|.++
T Consensus 125 ~~~g~-~~~~S~dAG~YlCn~~~Y~sL~~~~~~~~~~~a~FvHvP 168 (194)
T cd00501 125 REAGI-PARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVP 168 (194)
T ss_pred HhcCC-CceEcCCCCceeeHHHHHHHHHHHhccCCCceeceeecC
Confidence 99999 466544332 133333334443222 34677777775
No 76
>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.
Probab=29.51 E-value=93 Score=25.34 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCC-CCh-HHHHHHHHHhccccCCCeEEE
Q 024528 88 PELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR-KDG-THHYNMGKALAPLKDEGVLII 165 (266)
Q Consensus 88 ~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~-~~~-~~~~~lG~aL~~~~d~~v~ii 165 (266)
.+.|++|+..+++.|=. .+..-++-|=--+-+++ .+.-++|||+|.. ... .-|..+=..=++++..+|.|+
T Consensus 13 ~~iA~~IA~~iR~sgrg---~~~PGgl~~VkAiG~~l----~~~~~aQVSmNltd~~~Tpl~~vfe~v~~eA~~~Gv~v~ 85 (145)
T PF02971_consen 13 KEIAKKIAKAIRESGRG---KDQPGGLKYVKAIGWYL----EERGIAQVSMNLTDYEKTPLHRVFEEVKREAARYGVPVV 85 (145)
T ss_dssp HHHHHHHHHHHCTTTTC---TTC--SCTTEEEEEEEE----TTTTEEEEEEEES-TTTS-HHHHHHHHHHHHHCTT--EE
T ss_pred HHHHHHHHHHHHhcCCC---CCCCCCcceeeEeEEee----ccCCeeEEEEeeecCCCCcHHHHHHHHHHHHHHhCCCcc
Confidence 39999999999887721 11111221111111111 2567999999843 222 223333333344557899999
Q ss_pred Eec
Q 024528 166 GSG 168 (266)
Q Consensus 166 aSG 168 (266)
||=
T Consensus 86 gsE 88 (145)
T PF02971_consen 86 GSE 88 (145)
T ss_dssp EEE
T ss_pred ceE
Confidence 984
No 77
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.33 E-value=1.3e+02 Score=27.19 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCCh----HHHHHHHHHhcc------
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDG----THHYNMGKALAP------ 156 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~----~~~~~lG~aL~~------ 156 (266)
.|.+..+|.+.|.+.|++ +.......-+ ..++++| .+.+.++...+. +...++++-|.-
T Consensus 17 rpGIVa~VT~~La~~~vN-I~dls~~~~~---~~~~F~m-------~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~i~~ 85 (286)
T PRK13011 17 AAGIVAAVTGFLAEHGCY-ITELHSFDDR---LSGRFFM-------RVEFHSEEGLDEDALRAGFAPIAARFGMQWELHD 85 (286)
T ss_pred CCCHHHHHHHHHHhCCCC-EEEeeeeecC---CCCeEEE-------EEEEecCCCCCHHHHHHHHHHHHHHhCcEEEEee
Confidence 566899999999999996 5532222001 2334444 344444444443 334566665431
Q ss_pred c-cCCCeEEEEecCCccccc
Q 024528 157 L-KDEGVLIIGSGSATHNLR 175 (266)
Q Consensus 157 ~-~d~~v~iiaSG~lSH~l~ 175 (266)
- +..|++|++||. .|||.
T Consensus 86 ~~~~~ri~vl~Sg~-g~nl~ 104 (286)
T PRK13011 86 PAARPKVLIMVSKF-DHCLN 104 (286)
T ss_pred cccCceEEEEEcCC-cccHH
Confidence 1 357999999996 56663
No 78
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=29.05 E-value=40 Score=30.01 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeEEEEe
Q 024528 92 KRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVLIIGS 167 (266)
Q Consensus 92 ~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~iiaS 167 (266)
..+++.|++.|+| +...-+..+|+|.+.+ +....+.++.|..++...+ .+ |-.+.+....+|+||+-
T Consensus 48 ~~~~~~L~~~G~D-~iTlGNH~fD~gel~~---~l~~~~~~l~~aN~~~~~p-g~----~~~i~~~~G~kIaVigl 114 (255)
T cd07382 48 PKIAKELLSAGVD-VITMGNHTWDKKEILD---FIDEEPRLLRPANYPPGTP-GR----GYGVVEVNGKKIAVINL 114 (255)
T ss_pred HHHHHHHHhcCCC-EEEecccccCcchHHH---HHhcCcCceEeeecCCCCC-CC----CeEEEEECCEEEEEEEE
Confidence 5678888999998 4444678999995333 2234456777776643221 11 11233333578999874
No 79
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=28.97 E-value=79 Score=20.49 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=22.8
Q ss_pred CeEEEEecCCCChHHHHHHHHHhccc
Q 024528 132 PVCQLSVQTRKDGTHHYNMGKALAPL 157 (266)
Q Consensus 132 PvV~vs~~~~~~~~~~~~lG~aL~~~ 157 (266)
|+|.|.+..+.++++--+|.++|.++
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~ 26 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEA 26 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 88999998778899999999998776
No 80
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=28.93 E-value=5.2e+02 Score=24.75 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhCCCCcccc--c--CCCCccccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCe
Q 024528 87 APELAKRVKQLLTESGFNHVNE--D--TKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGV 162 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~--~--~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v 162 (266)
+..++..+.+.+.+.|+- .+. + ++-.+|-+- =|.|+..+.+..+|-+.+-..-++++..+.-+..+ +.+-|
T Consensus 159 SG~~~~~~~~~~~~~g~g-~s~~vs~Gn~~d~~~~d--~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~--~~KPV 233 (447)
T TIGR02717 159 SGALLTALLDWAEKNGVG-FSYFVSLGNKADIDESD--LLEYLADDPDTKVILLYLEGIKDGRKFLKTAREIS--KKKPI 233 (447)
T ss_pred hHHHHHHHHHHHHhcCCC-cceEEECCchhhCCHHH--HHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHc--CCCCE
Confidence 567888899888888873 442 1 223333332 35667677889999999977677776655555443 37889
Q ss_pred EEEEecCCcc
Q 024528 163 LIIGSGSATH 172 (266)
Q Consensus 163 ~iiaSG~lSH 172 (266)
+++=+|-..+
T Consensus 234 v~~k~Grs~~ 243 (447)
T TIGR02717 234 VVLKSGTSEA 243 (447)
T ss_pred EEEecCCChh
Confidence 9998888543
No 81
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=28.89 E-value=2.7e+02 Score=23.97 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCCCCe---EEeccCCCcccCCCCC-ccccccccCCCCCCH----HH-HHHHHHHH
Q 024528 28 FLKAWKEQVFTQRPNSILVISGHWETDVPT---VNVVQQNDVIYDFYNF-PEQMYKLKYPAPGAP----EL-AKRVKQLL 98 (266)
Q Consensus 28 ~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~---i~~~~~~~~~~Df~gf-p~~~y~~~y~~~g~~----eL-a~~i~~~l 98 (266)
..+.+.+.+.+.+||+||.+.=|--..... +..+.....+-|-.|. |... .+. ..|.. .| .+++++.+
T Consensus 48 ~~~~l~~~l~~~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~-~i~--~~gp~~y~ttlp~~~l~~~l 124 (208)
T PRK13194 48 AREELEKVLDEIKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDE-PIV--EGAPAAYFATLPTREIVEEL 124 (208)
T ss_pred HHHHHHHHHHHhCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCC-ccc--CCCCCcccCCCCHHHHHHHH
Confidence 344444445567999999998775443322 2222212223444442 2110 000 00100 01 57788889
Q ss_pred HhCCCCcccccC
Q 024528 99 TESGFNHVNEDT 110 (266)
Q Consensus 99 ~~~g~d~~~~~~ 110 (266)
+++|+ ++..+.
T Consensus 125 ~~~gi-p~~~S~ 135 (208)
T PRK13194 125 KKNGI-PAVLSY 135 (208)
T ss_pred HhcCC-CcEEeC
Confidence 99999 565443
No 82
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=28.80 E-value=96 Score=28.03 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeC---CCCC
Q 024528 27 HFLKAWKEQVFTQRPNSILVISG---HWET 53 (266)
Q Consensus 27 ~~~~~l~~~i~~~~Pd~IvviS~---Hw~~ 53 (266)
+..+.+.+-+++.. |++||.|. ||+.
T Consensus 169 ~ig~~i~k~i~e~~-~~liIaSSDf~HYep 197 (279)
T COG1355 169 DIGRAIAKVIKELG-DALIIASSDFTHYEP 197 (279)
T ss_pred HHHHHHHHHHhhcC-CeEEEEecCccccCc
Confidence 34444455555566 89999987 7743
No 83
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=28.63 E-value=2.4e+02 Score=21.50 Aligned_cols=76 Identities=20% Similarity=0.152 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC---CCCh-HHHHHHHHHhcc--ccCC
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT---RKDG-THHYNMGKALAP--LKDE 160 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~---~~~~-~~~~~lG~aL~~--~~d~ 160 (266)
...+|+.|.+.+.+.|++ +....-...+ +-. + .+...|-+..+. +..| .....+=+.|.+ +..+
T Consensus 12 T~~~A~~i~~~~~~~g~~-v~~~~~~~~~-----~~~-l---~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk 81 (140)
T TIGR01753 12 TEEMANIIAEGLKEAGAE-VDLLEVADAD-----AED-L---LSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGK 81 (140)
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEEcccCC-----HHH-H---hcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCC
Confidence 356788999999888874 4321111111 101 1 123444444433 2233 344444444443 4578
Q ss_pred CeEEEEecCCcc
Q 024528 161 GVLIIGSGSATH 172 (266)
Q Consensus 161 ~v~iiaSG~lSH 172 (266)
+++++|||+.+.
T Consensus 82 ~~~vfgt~g~~~ 93 (140)
T TIGR01753 82 KVALFGSGDWGY 93 (140)
T ss_pred EEEEEecCCCCc
Confidence 899999998754
No 84
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=28.37 E-value=70 Score=28.52 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCC
Q 024528 27 HFLKAWKEQVFTQRPNSILVISGHWE 52 (266)
Q Consensus 27 ~~~~~l~~~i~~~~Pd~IvviS~Hw~ 52 (266)
+.+++..+++++.++|.||++| ||-
T Consensus 169 ~~~~~~v~~lr~~~~D~II~l~-H~G 193 (281)
T cd07409 169 EAAQKEADKLKAQGVNKIIALS-HSG 193 (281)
T ss_pred HHHHHHHHHHHhcCCCEEEEEe-ccC
Confidence 4455555666666899999886 984
No 85
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=27.75 E-value=3.5e+02 Score=23.25 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 024528 26 RHFLKAWKEQVFTQRPNSILVISGHWETD 54 (266)
Q Consensus 26 ~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~ 54 (266)
.++.+.+.+.+.+.+||+||.++=+--..
T Consensus 44 ~~~~~~l~~~l~~~~Pd~vi~~G~a~g~~ 72 (212)
T TIGR00504 44 FEAIEALQQAIDEIEPDIVIMLGLAPGRS 72 (212)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeccCCCcC
Confidence 34455666666678999999998775433
No 86
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=27.71 E-value=1.1e+02 Score=23.05 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhCCCCcccc--cCCCCc-cccchhhhhhhccCCCCCeEEEEecCCCChHHHHHHHHHhccccCCCeE
Q 024528 87 APELAKRVKQLLTESGFNHVNE--DTKRGL-DHGAWVPLMLMYPEANIPVCQLSVQTRKDGTHHYNMGKALAPLKDEGVL 163 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~--~~~~~l-DHG~~vPL~~l~p~~~iPvV~vs~~~~~~~~~~~~lG~aL~~~~d~~v~ 163 (266)
+..|.+.|.+.+++.|+. -+. ..-.|+ .||.+-.-.++.-..+.|||-..+ .+.++.-++=..|+++...+.+
T Consensus 18 g~~l~~~ll~~~~~~gi~-GaTV~rgi~G~G~~~~ih~~~~~~l~~~lPvvIe~i---d~~eki~~~l~~l~~~~~~gli 93 (101)
T PF02641_consen 18 GKPLYEWLLERAREAGIA-GATVFRGIEGFGSSGRIHSARLLELSDDLPVVIEFI---DTEEKIEAFLPELKELVKDGLI 93 (101)
T ss_dssp TEEHHHHHHHHHHHTT-S-EEEEEE-SEEEE-------------TTS-EEEEEEE---EEHHHHHHHHHHHCTT-SSSEE
T ss_pred ceEHHHHHHHHHHHCCCC-eEEEEcceeeeCCCCcccccchhhhcCCCCEEEEEE---cCHHHHHHHHHHHHHHcCCCEE
Confidence 456889999999999984 221 111111 355555555554456899887776 4566666777777777655544
Q ss_pred E
Q 024528 164 I 164 (266)
Q Consensus 164 i 164 (266)
+
T Consensus 94 t 94 (101)
T PF02641_consen 94 T 94 (101)
T ss_dssp E
T ss_pred E
Confidence 4
No 87
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=27.48 E-value=28 Score=28.69 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=13.2
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCCC
Q 024528 29 LKAWKEQVFTQRPNSILVISGHWETDV 55 (266)
Q Consensus 29 ~~~l~~~i~~~~Pd~IvviS~Hw~~~~ 55 (266)
++.+.+++ ..=++|+||||-|++..
T Consensus 15 m~s~~~~l--k~KK~V~iiSPQWF~k~ 39 (163)
T PF04918_consen 15 MGSIGDQL--KNKKAVFIISPQWFTKK 39 (163)
T ss_dssp HTTSHHHH--TT-EEEEE--GGG--TT
T ss_pred HHhhhccc--cCCcEEEEECCcccCCC
Confidence 33445554 45689999999999853
No 88
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=27.39 E-value=66 Score=28.18 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCCeEEEEecCCCC---hHHHHHHHHHhccccCCCeEEEEecCCcccc
Q 024528 129 ANIPVCQLSVQTRKD---GTHHYNMGKALAPLKDEGVLIIGSGSATHNL 174 (266)
Q Consensus 129 ~~iPvV~vs~~~~~~---~~~~~~lG~aL~~~~d~~v~iiaSG~lSH~l 174 (266)
...-||-+|+-.... ....-.|-++++++.+++++||+|.+=+.+.
T Consensus 101 ~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~ 149 (247)
T cd07491 101 KKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAF 149 (247)
T ss_pred CCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCc
Confidence 467799999843221 1235678899999888999999888765543
No 89
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=27.11 E-value=78 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 024528 26 RHFLKAWKEQVFTQRPNSILVISGHWET 53 (266)
Q Consensus 26 ~~~~~~l~~~i~~~~Pd~IvviS~Hw~~ 53 (266)
.+..+++.+++++.++|.||++| ||-.
T Consensus 159 ~~~~~~~v~~lk~~~~D~VI~ls-H~G~ 185 (285)
T cd07405 159 IHEAKEVVPELKQEKPDIVIAAT-HMGH 185 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe-cccc
Confidence 34556666667666899998887 9854
No 90
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=26.76 E-value=3.1e+02 Score=21.36 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecC---CCChHHHHHHHHHhccccCCCeEE
Q 024528 88 PELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQT---RKDGTHHYNMGKALAPLKDEGVLI 164 (266)
Q Consensus 88 ~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~---~~~~~~~~~lG~aL~~~~d~~v~i 164 (266)
..+|+.|++.+.+.|++ +....+.. +.... +.- . .+.-+|-+..++ +..|.....+=+.|.. ..+++++
T Consensus 15 e~iA~~ia~~l~~~g~~-v~~~~~~~-~~~~~-~~~---~-~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~-~~k~~av 86 (140)
T TIGR01754 15 EEVAFMIQDYLQKDGHE-VDILHRIG-TLADA-PLD---P-ENYDLVFLGTWTWERGRTPDEMKDFIAELGY-KPSNVAI 86 (140)
T ss_pred HHHHHHHHHHHhhCCee-EEeccccc-ccccC-cCC---h-hhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc-cCCEEEE
Confidence 45789999999888874 43101000 10000 000 0 133445554432 2344455555444433 5689999
Q ss_pred EEecCCc
Q 024528 165 IGSGSAT 171 (266)
Q Consensus 165 iaSG~lS 171 (266)
+|||+.+
T Consensus 87 fgtgd~~ 93 (140)
T TIGR01754 87 FGTGETQ 93 (140)
T ss_pred EEcCCCC
Confidence 9999753
No 91
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=26.72 E-value=2.3e+02 Score=26.96 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC-CCCCeEEEEecC---CCChHHHHHHHHHhccc-cCCCe
Q 024528 88 PELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE-ANIPVCQLSVQT---RKDGTHHYNMGKALAPL-KDEGV 162 (266)
Q Consensus 88 ~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~-~~iPvV~vs~~~---~~~~~~~~~lG~aL~~~-~d~~v 162 (266)
..+|+.|++.|++.|++ +..-.-..-|.+-.+ .+ .+-.-|-|..++ ...|.-...||..++-. .++.+
T Consensus 261 ~~ma~aiaegl~~~gv~-v~~~~~~~~~~~eI~------~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~~ 333 (388)
T COG0426 261 EKMAQAIAEGLMKEGVD-VEVINLEDADPSEIV------EEILDAKGLVVGSPTINGGAHPPIQTALGYVLALAPKNKLA 333 (388)
T ss_pred HHHHHHHHHHhhhcCCc-eEEEEcccCCHHHHH------HHHhhcceEEEecCcccCCCCchHHHHHHHHHhccCcCceE
Confidence 45899999999999996 543111111333322 22 344555555543 35566677777777664 36789
Q ss_pred EEEEecCCcc
Q 024528 163 LIIGSGSATH 172 (266)
Q Consensus 163 ~iiaSG~lSH 172 (266)
+++||+|.+=
T Consensus 334 ~vfgS~GW~g 343 (388)
T COG0426 334 GVFGSYGWSG 343 (388)
T ss_pred EEEeccCCCC
Confidence 9999999853
No 92
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=26.56 E-value=1.1e+02 Score=22.10 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=16.6
Q ss_pred EEEEcCCCCCCCCCCCchHHHHHHHHHHHhhc
Q 024528 7 TFFISHGSPTLSIDESLPARHFLKAWKEQVFT 38 (266)
Q Consensus 7 ~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~ 38 (266)
+++++||+|.- ++..+.++++.+++.+
T Consensus 2 lllv~HGs~~~-----s~~~~~~~~~~~~l~~ 28 (101)
T cd03409 2 LLVVGHGSPYK-----DPYKKDIEAQAHNLAE 28 (101)
T ss_pred EEEEECCCCCC-----ccHHHHHHHHHHHHHH
Confidence 68999997642 1234556666666643
No 93
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=26.54 E-value=1.4e+02 Score=25.40 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCCEEEEEeCCC
Q 024528 30 KAWKEQVFTQRPNSILVISGHW 51 (266)
Q Consensus 30 ~~l~~~i~~~~Pd~IvviS~Hw 51 (266)
.++.++|++.+.|.||.+...+
T Consensus 2 ~~l~~~Lr~~~yD~vid~~~~~ 23 (247)
T PF01075_consen 2 LALIKKLRKEKYDLVIDLQGSF 23 (247)
T ss_dssp HHHHHHHCTSB-SEEEE-S-SH
T ss_pred HHHHHHHhCCCCCEEEECCCCc
Confidence 3567788888999999987653
No 94
>PRK06756 flavodoxin; Provisional
Probab=26.41 E-value=3.2e+02 Score=21.40 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCC---CChHHHHHHHHHhc--cccCCCe
Q 024528 88 PELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTR---KDGTHHYNMGKALA--PLKDEGV 162 (266)
Q Consensus 88 ~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~---~~~~~~~~lG~aL~--~~~d~~v 162 (266)
..+|+.|++.+.+.|++ +....-.. ++. ..-+ .+.-.|-+..++. .-|.....+=+.|. .+.++++
T Consensus 16 e~vA~~ia~~l~~~g~~-v~~~~~~~-~~~----~~~~---~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~ 86 (148)
T PRK06756 16 EEMADHIAGVIRETENE-IEVIDIMD-SPE----ASIL---EQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKA 86 (148)
T ss_pred HHHHHHHHHHHhhcCCe-EEEeehhc-cCC----HHHH---hcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEE
Confidence 45788999999988884 43211111 110 1111 2334455555432 23444555544554 3467899
Q ss_pred EEEEecCCc
Q 024528 163 LIIGSGSAT 171 (266)
Q Consensus 163 ~iiaSG~lS 171 (266)
+++|||+.+
T Consensus 87 ~~fgt~~~~ 95 (148)
T PRK06756 87 AVFGSCDSA 95 (148)
T ss_pred EEEeCCCCc
Confidence 999999863
No 95
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=26.38 E-value=93 Score=20.76 Aligned_cols=27 Identities=4% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCeEEEEecCCCChHHHHHHHHHhccc
Q 024528 131 IPVCQLSVQTRKDGTHHYNMGKALAPL 157 (266)
Q Consensus 131 iPvV~vs~~~~~~~~~~~~lG~aL~~~ 157 (266)
.|+|.|.+..+.+.++--+|.++|-++
T Consensus 1 MP~i~i~~~~Grs~EqK~~L~~~it~a 27 (60)
T PRK02289 1 MPFVRIDLFEGRSQEQKNALAREVTEV 27 (60)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 389999998889999999999998886
No 96
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=26.33 E-value=1.6e+02 Score=25.68 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEecCCCCh-HHHHHHHHHhccccCCCeEEE
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSVQTRKDG-THHYNMGKALAPLKDEGVLII 165 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~~~~~~~-~~~~~lG~aL~~~~d~~v~ii 165 (266)
+|++..+|++.+++.++ |+....+.++| --.+-+.-..-+..+-.|.++. ..+. .-.+ +.+++++ .++-||
T Consensus 124 ~p~~l~eiv~avr~~~~-pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv~~--~~~g~~ad~---~~I~~i~-~~ipVI 195 (233)
T cd02911 124 DPERLSEFIKALKETGV-PVSVKIRAGVD-VDDEELARLIEKAGADIIHVDA--MDPGNHADL---KKIRDIS-TELFII 195 (233)
T ss_pred CHHHHHHHHHHHHhcCC-CEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEECc--CCCCCCCcH---HHHHHhc-CCCEEE
Confidence 68999999999998888 67765555664 2222222222232233555542 1211 1112 3344444 468899
Q ss_pred EecCCcc
Q 024528 166 GSGSATH 172 (266)
Q Consensus 166 aSG~lSH 172 (266)
|.|++..
T Consensus 196 gnGgI~s 202 (233)
T cd02911 196 GNNSVTT 202 (233)
T ss_pred EECCcCC
Confidence 9999854
No 97
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=26.01 E-value=89 Score=20.99 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCeEEEEecCCCChHHHHHHHHHhccc
Q 024528 131 IPVCQLSVQTRKDGTHHYNMGKALAPL 157 (266)
Q Consensus 131 iPvV~vs~~~~~~~~~~~~lG~aL~~~ 157 (266)
.|+|.|.+..+.+.++-.+|-++|.++
T Consensus 1 MP~v~i~l~~grt~eqk~~l~~~it~~ 27 (64)
T PRK01964 1 MPIVQIQLLEGRPEEKIKNLIREVTEA 27 (64)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 499999997788999988888888876
No 98
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=25.92 E-value=62 Score=32.71 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCccc--ccCCCCccccchhhhhhh---cc--------CCCCCeEEEEe
Q 024528 88 PELAKRVKQLLTESGFNHVN--EDTKRGLDHGAWVPLMLM---YP--------EANIPVCQLSV 138 (266)
Q Consensus 88 ~eLa~~i~~~l~~~g~d~~~--~~~~~~lDHG~~vPL~~l---~p--------~~~iPvV~vs~ 138 (266)
..-+..|.+.+++.++ +. .|...+-+ |++||+.=. +| ..+.|||++.+
T Consensus 532 ~~~~r~i~~aLk~g~~--v~il~Dq~~~~~-~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~~~ 592 (656)
T PRK15174 532 ADVVRACMQTLHSGQS--LVVAIDGALNLS-APTIDFFGQQITYSTFCSRLAWKMHLPTVFSVP 592 (656)
T ss_pred chHHHHHHHHHHcCCe--EEEEeCCCCCCC-CceeccCCCccCcCcHHHHHHHHHCCCEEEeEE
Confidence 4557789999987765 33 34444434 788874321 11 13789999887
No 99
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=25.50 E-value=3.7e+02 Score=23.13 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 024528 27 HFLKAWKEQVFTQRPNSILVISGHWET 53 (266)
Q Consensus 27 ~~~~~l~~~i~~~~Pd~IvviS~Hw~~ 53 (266)
.+.+.+.+.+.+.+||+||.++=|--.
T Consensus 48 ~~~~~l~~~l~~~~Pd~vih~G~a~~~ 74 (215)
T PRK13197 48 KSAEVLKEAIEEVQPDAVICIGQAGGR 74 (215)
T ss_pred HHHHHHHHHHHHhCCCEEEEeccCCCC
Confidence 344455555556799999999876533
No 100
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.08 E-value=98 Score=29.74 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccCCCCCeEEEEe
Q 024528 87 APELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPEANIPVCQLSV 138 (266)
Q Consensus 87 ~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~vs~ 138 (266)
...++.+|++.|+++|+|.+-...+=+.=|=+-.-+.--.....||||+|..
T Consensus 321 a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~ 372 (431)
T TIGR01917 321 SKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEee
Confidence 4468999999999999984434445555554433222222347899999986
No 101
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=24.82 E-value=5.8e+02 Score=25.32 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=38.3
Q ss_pred ceEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCeEEeccCCCcccCCCCCccccccccCCC
Q 024528 5 KNTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRPNSILVISGHWETDVPTVNVVQQNDVIYDFYNFPEQMYKLKYPA 84 (266)
Q Consensus 5 ~~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~ 84 (266)
.|.+++.|.+|... ..+.-+.......-| +|+||.+-.+... ... .....|..+.-...-+..|..
T Consensus 64 kpgV~~~tsGPGat--------N~~tgla~A~~d~~P--ll~itGqv~~~~~--g~~--afQe~D~~~l~~p~tk~~~~v 129 (550)
T COG0028 64 KPGVCLVTSGPGAT--------NLLTGLADAYMDSVP--LLAITGQVPTSLI--GTD--AFQEVDQVGLFRPITKYNFEV 129 (550)
T ss_pred CCEEEEECCCCcHH--------HHHHHHHHHHhcCCC--EEEEeCCcccccc--Ccc--hhhhcchhhHhhhhheeEEEe
Confidence 36788888877653 223333333223334 6777775433221 111 111125444333333334444
Q ss_pred CCCHHHHHHHHHHHH
Q 024528 85 PGAPELAKRVKQLLT 99 (266)
Q Consensus 85 ~g~~eLa~~i~~~l~ 99 (266)
....++.+.|.++.+
T Consensus 130 ~~~~~ip~~i~~Af~ 144 (550)
T COG0028 130 RSPEDIPEVVARAFR 144 (550)
T ss_pred CCHHHHHHHHHHHHH
Confidence 445666666666654
No 102
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=24.79 E-value=1e+02 Score=20.29 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCChHHHHHHHHHhccc
Q 024528 131 IPVCQLSVQTRKDGTHHYNMGKALAPL 157 (266)
Q Consensus 131 iPvV~vs~~~~~~~~~~~~lG~aL~~~ 157 (266)
.|+|.|.+..+.+.++--+|-++|.+.
T Consensus 1 MP~i~i~~~~Grs~eqk~~l~~~it~~ 27 (61)
T PRK02220 1 MPYVHIKLIEGRTEEQLKALVKDVTAA 27 (61)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 389999987788999999999988875
No 103
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=24.75 E-value=1e+02 Score=20.37 Aligned_cols=27 Identities=4% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCChHHHHHHHHHhccc
Q 024528 131 IPVCQLSVQTRKDGTHHYNMGKALAPL 157 (266)
Q Consensus 131 iPvV~vs~~~~~~~~~~~~lG~aL~~~ 157 (266)
.|+|.|.+..+.+.++--+|.++|.++
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~~ 27 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITRV 27 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 489999998788999999999998885
No 104
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.54 E-value=32 Score=29.93 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=14.2
Q ss_pred cCCCeEEEEecCCcccc
Q 024528 158 KDEGVLIIGSGSATHNL 174 (266)
Q Consensus 158 ~d~~v~iiaSG~lSH~l 174 (266)
++.+|+|||||.++-.|
T Consensus 3 sk~kvaiigsgni~tdl 19 (310)
T COG4569 3 SKRKVAIIGSGNIGTDL 19 (310)
T ss_pred CcceEEEEccCcccHHH
Confidence 35789999999998765
No 105
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=23.93 E-value=98 Score=27.32 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 024528 27 HFLKAWKEQVFTQRPNSILVISGHWET 53 (266)
Q Consensus 27 ~~~~~l~~~i~~~~Pd~IvviS~Hw~~ 53 (266)
+.+++..+++++.++|.||+++ ||-.
T Consensus 170 ~~~~~~v~~lr~~~~D~IIvl~-H~g~ 195 (277)
T cd07410 170 ETAKKYVPKLRAEGADVVVVLA-HGGF 195 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEEe-cCCc
Confidence 4566666667666899888877 9843
No 106
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=23.90 E-value=4.1e+02 Score=22.84 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCCCC---eEEeccCCCcccCCCCC-ccccccccCCCCCCH----HH-HHHHHHH
Q 024528 27 HFLKAWKEQVFTQRPNSILVISGHWETDVP---TVNVVQQNDVIYDFYNF-PEQMYKLKYPAPGAP----EL-AKRVKQL 97 (266)
Q Consensus 27 ~~~~~l~~~i~~~~Pd~IvviS~Hw~~~~~---~i~~~~~~~~~~Df~gf-p~~~y~~~y~~~g~~----eL-a~~i~~~ 97 (266)
++.+.+.+.+.+.+||+||.+.=+--.... .+.++.....+-|-.|. |... .+.-...|.. .| .+++++.
T Consensus 48 ~~~~~l~~~~~~~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~-~i~~~~~gp~~y~stLpv~~l~~~ 126 (211)
T PRK13196 48 AAMAALSRLLDELQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDT-PVCTEPDAPAAYLSTLPLRAILAA 126 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCC-CcccCCCCccceecCCCHHHHHHH
Confidence 334444555567899999998765433322 22232222223444442 2110 1100001110 01 4678888
Q ss_pred HHhCCCCccccc
Q 024528 98 LTESGFNHVNED 109 (266)
Q Consensus 98 l~~~g~d~~~~~ 109 (266)
++++|+ |+..+
T Consensus 127 l~~~gi-p~~iS 137 (211)
T PRK13196 127 WHDAGI-PGHIS 137 (211)
T ss_pred HHhcCC-CceEc
Confidence 899999 56544
No 107
>COG4031 Predicted metal-binding protein [General function prediction only]
Probab=23.78 E-value=96 Score=26.47 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=26.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCCEEEEEeCC-C
Q 024528 21 ESLPARHFLKAWKEQVFTQRPNSILVISGH-W 51 (266)
Q Consensus 21 ~~~~~~~~~~~l~~~i~~~~Pd~IvviS~H-w 51 (266)
++...++++++|+++|..++|+.|++..+| |
T Consensus 54 edg~lRNl~erlae~i~s~rpe~~~v~gs~e~ 85 (227)
T COG4031 54 EDGSLRNLYERLAERIYSYRPESIVVSGSEEL 85 (227)
T ss_pred CcchHHHHHHHHHHHHHhcCccceEecCChHH
Confidence 345677889999999999999999999776 5
No 108
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=23.33 E-value=1.1e+02 Score=26.93 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 024528 25 ARHFLKAWKEQVFTQRPNSILVISGHWE 52 (266)
Q Consensus 25 ~~~~~~~l~~~i~~~~Pd~IvviS~Hw~ 52 (266)
..+.++++.+.+++.++|.||+++ |+.
T Consensus 156 ~~~~~~~~v~~~~~~~~D~iVvl~-H~g 182 (257)
T cd07406 156 YVETARELVDELREQGADLIIALT-HMR 182 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEe-ccC
Confidence 345566666666778899999998 873
No 109
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.94 E-value=3.1e+02 Score=26.35 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCCCC------CCeEEeccCCCcccCCCCCccccccccCCCCCCHHHHHHHHHHHHhCC
Q 024528 29 LKAWKEQVFTQRPNSILVISGHWETD------VPTVNVVQQNDVIYDFYNFPEQMYKLKYPAPGAPELAKRVKQLLTESG 102 (266)
Q Consensus 29 ~~~l~~~i~~~~Pd~IvviS~Hw~~~------~~~i~~~~~~~~~~Df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~g 102 (266)
.+++..-+ +... -|.||||+.... ...|....+.-...|..| +.+-+-+.+|+++.++|.+.+++.|
T Consensus 25 ~rk~~~ll-~~ga-~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~-----~~lv~~at~d~~~n~~i~~~a~~~~ 97 (457)
T PRK10637 25 ERKARLLL-DAGA-RLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDT-----CWLAIAATDDDAVNQRVSEAAEARR 97 (457)
T ss_pred HHHHHHHH-HCCC-EEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCC-----CEEEEECCCCHHHhHHHHHHHHHcC
Confidence 44444333 2344 366789975321 122333322222233333 2355688899999999999999999
Q ss_pred CCcccccCCCCccccchhhhhhhccC--CCCC-eEEEEecCCCChHHHHHHHHHhcccc
Q 024528 103 FNHVNEDTKRGLDHGAWVPLMLMYPE--ANIP-VCQLSVQTRKDGTHHYNMGKALAPLK 158 (266)
Q Consensus 103 ~d~~~~~~~~~lDHG~~vPL~~l~p~--~~iP-vV~vs~~~~~~~~~~~~lG~aL~~~~ 158 (266)
+ .+....+... + -|.+|. ..-+ +|-||. .+.+|.....+-+.|.++.
T Consensus 98 ~-lvN~~d~~~~--~-----~f~~pa~~~~g~l~iaisT-~G~sP~~a~~lr~~ie~~~ 147 (457)
T PRK10637 98 I-FCNVVDAPKA--A-----SFIMPSIIDRSPLMVAVSS-GGTSPVLARLLREKLESLL 147 (457)
T ss_pred c-EEEECCCccc--C-----eEEEeeEEecCCEEEEEEC-CCCCcHHHHHHHHHHHHhc
Confidence 8 5654332221 1 144554 2344 444554 4577777666666666654
No 110
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.61 E-value=1.6e+02 Score=25.02 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=64.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhCCCCcccccCCCCccccchhhhhhhccC--CCCCeEEEEec-CCCChHHHHHHHHHh
Q 024528 78 YKLKYPAPGAPELAKRVKQLLTESGFNHVNEDTKRGLDHGAWVPLMLMYPE--ANIPVCQLSVQ-TRKDGTHHYNMGKAL 154 (266)
Q Consensus 78 y~~~y~~~g~~eLa~~i~~~l~~~g~d~~~~~~~~~lDHG~~vPL~~l~p~--~~iPvV~vs~~-~~~~~~~~~~lG~aL 154 (266)
+.+-+-+++|+++.+.|...+++.|+ ++....+..+ +. |.+|. ..-+ ++|++. .+.+|.-...+-+.|
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~i-lvn~~d~~e~--~~-----f~~pa~~~~g~-l~iaisT~G~sP~la~~lr~~i 140 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGV-PVNVVDDPEL--CS-----FIFPSIVDRSP-VVVAISSGGAAPVLARLLRERI 140 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCC-EEEECCCccc--Ce-----EEEeeEEEcCC-EEEEEECCCCCcHHHHHHHHHH
Confidence 34557899999999999999999999 6643222221 22 34454 2233 444442 457887777777777
Q ss_pred ccccCCCe--EEEEecCCccccccccCCCC-CcchhHHHHHHHHHHHHHcCCHhHHhcc
Q 024528 155 APLKDEGV--LIIGSGSATHNLRALQFDGD-SVASWASEFDNWLKDALLQGRYEDVNHY 210 (266)
Q Consensus 155 ~~~~d~~v--~iiaSG~lSH~l~~~~~~~~-~~~~~~~eFD~~v~~~l~~gd~~~l~~~ 210 (266)
.+...+.+ ++--.|.+-+.+....+... .-.-|..-+|..+.+++++|+.++..++
T Consensus 141 e~~l~~~~~~~~~~~~~~R~~~k~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~ 199 (205)
T TIGR01470 141 ETLLPPSLGDLATLAATWRDAVKKRLPNGAARRRFWEKFFDGAFAERVLAGREEQAERV 199 (205)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHhccHHHHHHHcCCHHHHHHH
Confidence 66543221 11111112121111111000 0011333445556677777777666554
No 111
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=22.50 E-value=24 Score=26.86 Aligned_cols=14 Identities=50% Similarity=0.881 Sum_probs=11.9
Q ss_pred CeEEEEecCCcccc
Q 024528 161 GVLIIGSGSATHNL 174 (266)
Q Consensus 161 ~v~iiaSG~lSH~l 174 (266)
||+|||||+--|-+
T Consensus 2 kVLviGsGgREHAi 15 (100)
T PF02844_consen 2 KVLVIGSGGREHAI 15 (100)
T ss_dssp EEEEEESSHHHHHH
T ss_pred EEEEECCCHHHHHH
Confidence 69999999987754
No 112
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=22.03 E-value=4e+02 Score=23.15 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=15.7
Q ss_pred HHHHhcccc--CCCeEEEEecCCcc
Q 024528 150 MGKALAPLK--DEGVLIIGSGSATH 172 (266)
Q Consensus 150 lG~aL~~~~--d~~v~iiaSG~lSH 172 (266)
.-+.|.+.. .++|+++.+||-+-
T Consensus 87 ~~~~i~~~~~~G~~Vv~L~~GDP~i 111 (241)
T PRK05990 87 SAEAVAAHLDAGRDVAVICEGDPFF 111 (241)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCcHH
Confidence 444555542 57899999999654
No 113
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=21.99 E-value=1.6e+02 Score=21.43 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=19.4
Q ss_pred EEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCC
Q 024528 7 TFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRP 41 (266)
Q Consensus 7 ~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~P 41 (266)
+++++||+.. ..+.+.+.++.+++++..|
T Consensus 2 ivlv~hGS~~------~~~~~~~~~l~~~l~~~~~ 30 (101)
T cd03416 2 LLLVGHGSRD------PRAAEALEALAERLRERLP 30 (101)
T ss_pred EEEEEcCCCC------HHHHHHHHHHHHHHHhhCC
Confidence 5789999733 2345677788887765444
No 114
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=21.46 E-value=37 Score=32.62 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=16.5
Q ss_pred cccCCCeEEEEecCCccccc
Q 024528 156 PLKDEGVLIIGSGSATHNLR 175 (266)
Q Consensus 156 ~~~d~~v~iiaSG~lSH~l~ 175 (266)
+++.+||+|||||.+-+.+-
T Consensus 172 ~~~GKrV~VIG~GaSA~di~ 191 (443)
T COG2072 172 DLRGKRVLVIGAGASAVDIA 191 (443)
T ss_pred ccCCCeEEEECCCccHHHHH
Confidence 34679999999999988763
No 115
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=21.28 E-value=68 Score=23.41 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCccccc
Q 024528 83 PAPGAPELAKRVKQLLTESGFNHVNED 109 (266)
Q Consensus 83 ~~~g~~eLa~~i~~~l~~~g~d~~~~~ 109 (266)
-++|..++|++|.+..++.|+ |+-.+
T Consensus 21 vAKG~g~~A~~I~~~A~e~~V-Pi~~~ 46 (82)
T TIGR00789 21 VASGVGEVAERIIEIAKKHGI-PIVED 46 (82)
T ss_pred EEEeCCHHHHHHHHHHHHcCC-CEEeC
Confidence 678999999999999999999 77644
No 116
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=20.97 E-value=1.2e+02 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=11.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEeC
Q 024528 28 FLKAWKEQVFTQRPNSILVISG 49 (266)
Q Consensus 28 ~~~~l~~~i~~~~Pd~IvviS~ 49 (266)
.++++.+++. .-|+||++||
T Consensus 55 ~~~~l~~~i~--~AD~iI~~sP 74 (171)
T TIGR03567 55 AIKAATAQVA--QADGVVVATP 74 (171)
T ss_pred HHHHHHHHHH--HCCEEEEECC
Confidence 3555555553 3477777777
No 117
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.63 E-value=1.9e+02 Score=21.72 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCCCCCCCchHHHHHHHHHHHhhcCCC
Q 024528 6 NTFFISHGSPTLSIDESLPARHFLKAWKEQVFTQRP 41 (266)
Q Consensus 6 ~~~fisHg~P~~~~~~~~~~~~~~~~l~~~i~~~~P 41 (266)
.++++.||++.- . .+.++++.+.+++..+
T Consensus 2 ~illvgHGSr~~------~-~~~~~~l~~~l~~~~~ 30 (103)
T cd03413 2 AVVFMGHGTDHP------S-NAVYAALEYVLREEDP 30 (103)
T ss_pred eEEEEECCCCch------h-hhHHHHHHHHHHhcCC
Confidence 368899997542 1 3567777777754443
No 118
>PRK00170 azoreductase; Reviewed
Probab=20.61 E-value=1.2e+02 Score=25.17 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeC-CCCC
Q 024528 27 HFLKAWKEQVFTQRPNSILVISG-HWET 53 (266)
Q Consensus 27 ~~~~~l~~~i~~~~Pd~IvviS~-Hw~~ 53 (266)
+.++++.+++. .-|+||+.|| +|.+
T Consensus 75 d~~~~l~~~i~--~AD~iV~~sP~y~~~ 100 (201)
T PRK00170 75 ALSDELLEEFL--AADKIVIAAPMYNFS 100 (201)
T ss_pred HHHHHHHHHHH--HCCEEEEeecccccC
Confidence 45666666664 3599999999 7654
Done!