BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024529
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 10/202 (4%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+++ IA +G V F + +
Sbjct: 442 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPTQEE 494
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
V+ +H +DG ++ L ++ G E ++ L FG T + P+ LSGG
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA-IKDKLIEFGFTDEMIAMPISALSGGW 553
Query: 180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
K ++A A+ + I+LLDEP+NHLD V L+ L + +SHD + E
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 613
Query: 240 ELWVVSEGKATPFHGTFHDYKK 261
+ K + G F ++ K
Sbjct: 614 YIINYEGLKLRKYKGNFTEFVK 635
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 54/77 (70%)
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 234
LSGGQK ++ A T+++PH+I+LDEP+N+LD D++ AL + L F+GG+++++H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFT 961
Query: 235 SGSVEELWVVSEGKATP 251
EE+W V +G+ TP
Sbjct: 962 KNLTEEVWAVKDGRMTP 978
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 33 EVVNDPDYKFEFPTPDDRPG-----PPIISFSDASFGYPGGPI-LFKNLNFGIDLDSRIA 86
E +++ D +F+FP P G I+ ++ F YPG ++NF L SRIA
Sbjct: 644 EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIA 703
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH---HVDGLDLSSNPLLYMM 143
++GPNG GKST++ ++ GEL P+SG V+ RIA QH H++ L P Y+
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIES-HLDKTPSEYIQ 762
Query: 144 RCF 146
F
Sbjct: 763 WRF 765
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 29/226 (12%)
Query: 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
G +SFS+ F G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G
Sbjct: 37 GDDSLSFSN--FSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 112 TVFRSAKVRIAVFSQH----------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 161
+ S RI+ SQ+ ++ G+ Y R + +L + F
Sbjct: 94 KIKHSG--RISFCSQNSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKF 145
Query: 162 GVTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQG 216
N+ L + TLSGGQ++R++ A+ +K + LLD P +LD+ + E+ +
Sbjct: 146 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 217 LVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
L+ + IL+ S EHL +++ ++ EG ++ F+GTF + + +
Sbjct: 206 LMANKTRILVTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 248
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 26/225 (11%)
Query: 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
G +SFS+ F G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G
Sbjct: 37 GDDSLSFSN--FSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 112 TVFRSAKVRIA---------VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162
+ S ++ ++ + G+ Y R + +L + F
Sbjct: 94 KIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDE----YRYRSV--IKACQLEEDISKFA 147
Query: 163 VTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGL 217
N+ L + TLSGGQ++R++ A+ +K + LLD P +LD+ + E+ + L
Sbjct: 148 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 207
Query: 218 VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
+ + IL+ S EHL +++ ++ EG ++ F+GTF + + +
Sbjct: 208 MANKTRILVTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 249
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 82.4 bits (202), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 54/77 (70%)
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 234
LSGGQK ++ A T+++PH+I+LDEP+N+LD D++ AL + L F+GG+++++H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFT 961
Query: 235 SGSVEELWVVSEGKATP 251
EE+W V +G+ TP
Sbjct: 962 KNLTEEVWAVKDGRXTP 978
Score = 78.2 bits (191), Expect = 5e-15, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+ + IA +G V F + +
Sbjct: 442 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEE 494
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
V+ +H +DG ++ L ++ G E ++ L FG T P+ LSGG
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSGGW 553
Query: 180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
K ++A A+ + I+LLDEP+NHLD V L+ L + +SHD + E
Sbjct: 554 KXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 613
Query: 240 ELWVVSEGKATPFHGTFHDYKK 261
+ K + G F ++ K
Sbjct: 614 YIINYEGLKLRKYKGNFTEFVK 635
Score = 75.9 bits (185), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 33 EVVNDPDYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIA 86
E +++ D +F+FP P G I+ ++ F YPG ++NF L SRIA
Sbjct: 644 EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIA 703
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
++GPNG GKST++ ++ GEL P+SG V+ RIA QH
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 744
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 82.0 bits (201), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 54/77 (70%)
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 234
LSGGQK ++ A T+++PH+I+LDEP+N+LD D++ AL + L F+GG+++++H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFT 955
Query: 235 SGSVEELWVVSEGKATP 251
EE+W V +G+ TP
Sbjct: 956 KNLTEEVWAVKDGRXTP 972
Score = 77.8 bits (190), Expect = 5e-15, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
S Y G IL + R + GPNG GKST+ + IA +G V F + +
Sbjct: 436 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEE 488
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
V+ +H +DG ++ L ++ G E ++ L FG T P+ LSGG
Sbjct: 489 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSGGW 547
Query: 180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
K ++A A+ + I+LLDEP+NHLD V L+ L + +SHD + E
Sbjct: 548 KXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 607
Query: 240 ELWVVSEGKATPFHGTFHDYKK 261
+ K + G F ++ K
Sbjct: 608 YIINYEGLKLRKYKGNFTEFVK 629
Score = 75.9 bits (185), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 33 EVVNDPDYKFEFPTPDDRPG-----PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIA 86
E +++ D +F+FP P G I+ ++ F YPG ++NF L SRIA
Sbjct: 638 EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIA 697
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
++GPNG GKST++ ++ GEL P+SG V+ RIA QH
Sbjct: 698 VIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 738
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
++F G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G + S R
Sbjct: 44 SNFSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 100
Query: 121 IAVFSQH----------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL- 169
I+ SQ+ ++ G+ Y R + +L + F N+ L
Sbjct: 101 ISFCSQNSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLG 154
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGIL 225
+ TLSGGQ++R++ A+ +K + LLD P +LD+ + E+ + L+ + IL
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 226 MVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
+ S EHL +++ ++ EG ++ F+GTF + + +
Sbjct: 215 VTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 248
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 26/217 (11%)
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
+F GG + K++NF I+ +A+ G G GK+++L +I GEL+PS G + S R
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 70
Query: 121 IAVFSQ----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL- 169
I+ SQ ++ G+ Y R + +L + F N+ L
Sbjct: 71 ISFCSQFSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLG 124
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGIL 225
+ TLSGGQ++R++ A+ +K + LLD P +LD+ + E+ + L+ + IL
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 226 MVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
+ S EHL +++ ++ EG ++ F+GTF + + +
Sbjct: 185 VTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 218
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
+F GG + K++NF I+ +A+ G G GK+++L +I GEL+PS G + S R
Sbjct: 25 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 82
Query: 121 IAVFSQHHVDGLDLSSNPLLYMM-----RCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYT 174
I+ SQ +++ + R + +L + F N+ L + T
Sbjct: 83 ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 142
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHD 230
LSGGQ++R++ A+ +K + LLD P +LD+ + E+ + L+ + IL+ S
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 202
Query: 231 EHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
EHL +++ ++ EG ++ F+GTF + + +
Sbjct: 203 EHL--KKADKILILHEG-SSYFYGTFSELQNL 231
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
+F GG + K++NF I+ +A+ G G GK+++L +I GEL+PS G + S R
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 70
Query: 121 IAVFSQHHVDGLDLSSNPLLYMM-----RCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYT 174
I+ SQ +++ + R + +L + F N+ L + T
Sbjct: 71 ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 130
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHD 230
LSGGQ++R++ A+ +K + LLD P +LD+ + E+ + L+ + IL+ S
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 231 EHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
EHL +++ ++ EG ++ F+GTF + + +
Sbjct: 191 EHL--KKADKILILHEG-SSYFYGTFSELQNL 219
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA---- 122
G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G + S +V
Sbjct: 50 GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 123 -----VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLS 176
++ + G+ R V +L+ + F N L + TLS
Sbjct: 109 WIMPGTIKENIISGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 162
Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEH 232
GGQ++R++ A+ +K + LLD P +LD+ E+ + L+ + IL+ S EH
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 233 LISGSVEELWVVSEGKATPFHGTFHDYKKM 262
L +++ ++ +G ++ F+GTF + + +
Sbjct: 223 L--RKADKILILHQG-SSYFYGTFSELQSL 249
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 27/211 (12%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G + S RI+ SQ
Sbjct: 50 GTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQ 106
Query: 127 ----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTL 175
++ G+ Y R + +L + F N+ L + TL
Sbjct: 107 FSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLGEGGITL 160
Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDE 231
S GQ+++++ A+ +K + LLD P +LD+ + E+ + L+ + IL+ S E
Sbjct: 161 SEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 232 HLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
HL +++ ++ EG ++ F+GTF + + +
Sbjct: 221 HL--KKADKILILHEG-SSYFYGTFSELQNL 248
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA---- 122
G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G + S +V
Sbjct: 50 GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 123 -----VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLS 176
++ + G+ R V +L+ + F N L + TLS
Sbjct: 109 WIMPGTIKENIIRGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 162
Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEH 232
GGQ++R++ A+ +K + LLD P +LD+ E+ + L+ + IL+ S EH
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 233 LISGSVEELWVVSEGKATPFHGTFHDYKKM 262
L +++ ++ +G ++ F+GTF + + +
Sbjct: 223 L--RKADKILILHQG-SSYFYGTFSELQSL 249
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 23/209 (11%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR-IAVFS 125
G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G + S +V + FS
Sbjct: 50 GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 126 -------QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSG 177
+ ++ G+ R V +L+ + F N L + TLSG
Sbjct: 109 WIMPGTIKENIIGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 162
Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHL 233
GQ++R++ A+ +K + LLD P +LD+ E+ + L+ + IL+ S EHL
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL 222
Query: 234 ISGSVEELWVVSEGKATPFHGTFHDYKKM 262
+++ ++ +G ++ F+GTF + + +
Sbjct: 223 --RKADKILILHQG-SSYFYGTFSELQSL 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G + S +V
Sbjct: 50 GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 127 HHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGGQKS 181
+ G + N + + R V +L+ + F N L + TLSGGQ++
Sbjct: 109 WIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 182 RVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLISGS 237
R++ A+ +K + LLD P +LD+ E+ + L+ + IL+ S EHL
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL--RK 225
Query: 238 VEELWVVSEGKATPFHGTFHDYKKM 262
+++ ++ +G ++ F+GTF + + +
Sbjct: 226 ADKILILHQG-SSYFYGTFSELQSL 249
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G P+L KN+N I+ +A+ G G GK+++L LI GEL+ S G + S +V
Sbjct: 50 GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 127 HHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGGQKS 181
+ G + N + + R V +L+ + F N L + TLSGGQ++
Sbjct: 109 WIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 182 RVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLISGS 237
R++ A+ +K + LLD P +LD+ E+ + L+ + IL+ S EHL
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL--RK 225
Query: 238 VEELWVVSEGKATPFHGTFHDYKKM 262
+++ ++ +G ++ F+GTF + + +
Sbjct: 226 ADKILILHQG-SSYFYGTFSELQSL 249
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 21/216 (9%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+ + ++ Y G K +N I A++G NG+GKST+ + G L+PSSG +
Sbjct: 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 115 RSAK----VRIAVFSQHHVDGLDLSS--NPL----LYMMRCFPGV----PEQKLRAHL-G 159
K R + G+ N L +Y F V PE ++R +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 160 SFGVTG--NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
+ TG +L +P + LS GQK RVA A + +P +++LDEP+ LD V +++ L
Sbjct: 127 ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 218 VLFQG----GILMVSHDEHLISGSVEELWVVSEGKA 249
V Q I++ +HD ++ + ++V+ EG+
Sbjct: 187 VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G P+L K++NF I+ +A+ G G GK+++L +I GEL+PS G + S RI+ SQ
Sbjct: 50 GTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQ 106
Query: 127 HHV-------DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGG 178
+ + + Y R + +L + F N+ L + TLS G
Sbjct: 107 FSWIMPGTIKENIIFGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGGITLSEG 164
Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLI 234
Q+++++ A+ +K + LLD P +LD+ + E+ + L+ + IL+ S EHL
Sbjct: 165 QQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL- 223
Query: 235 SGSVEELWVVSEGKATPFHGTFHDYKKM 262
+++ ++ EG ++ F+GTF + + +
Sbjct: 224 -KKADKILILHEG-SSYFYGTFSELQNL 249
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
G I F YPGG + ++F I + ++GP+G GK+TIL+LIAG +P+ G
Sbjct: 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
Query: 112 TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG---------VPEQKLRA---HLG 159
V+ K + Q GL + L M + VP+ ++ A L
Sbjct: 71 DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-- 217
F + A + + LSGGQ+ RVA A+ +P ++L DEP +D L +
Sbjct: 131 RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190
Query: 218 VLFQGGI--LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261
V + G+ + V+HD+ + + V+ EG F Y+K
Sbjct: 191 VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131
N+N I +A++GP+G GKST+L IAG +P+SG ++ K + + G
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 132 LDLSSNPLLYMMRCFPGVP-------------EQKLRAHLGSFGVTGNLALQPMYTLSGG 178
L + L M + + ++K+R + L P + LSGG
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-WQLSGG 137
Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GILMVSHDEHLI 234
Q+ RVA A+ K+P ++LLDEP ++LD V A ++ L G + V+HD+
Sbjct: 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA 197
Query: 235 SGSVEELWVVSEGK 248
+ + V+ EG+
Sbjct: 198 LAMADRIAVIREGE 211
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RI 121
G + N+N I+ R ++GP+G GK+T +++IAG PS+G ++ ++ ++
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------EQKLRAHLGSFGVTGNLALQPM 172
V + G+ + L + F + ++++R + V L + +
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE--VAKILDIHHV 133
Query: 173 YT-----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-G 223
LSGGQ+ RVA A+ K P ++LLDEP ++LD D+ AL++ + G
Sbjct: 134 LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 224 ILMVSHDEHLISGSVEELWVVSEGK 248
+L+VSHD I + + V+ +GK
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGK 218
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 34/228 (14%)
Query: 56 ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ FS F YP P + + L+ + +A+VG +G GKST+++L+ P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 114 FRSAKVRIAVFSQHHVDGLD-----LSSNPLLYMMRCFPGVP----------EQKLRA-- 156
F K Q +V L +S P+L+ + E+ +RA
Sbjct: 1091 FLDGKE----IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 157 ------HLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
+ S N + T LSGGQK R+A A+ ++PHI+LLDE ++ LD ++
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 210 VEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255
+ + + L + G ++++H I + +L VV + HGT
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNA--DLIVVIQNGKVKEHGT 1252
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 47 PDDRPGPPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
PD+ G + F + F YP + K LN + +A+VG +G GKST ++L+
Sbjct: 381 PDNIQGN--LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438
Query: 105 ELQPSSGTV------FRSAKVR-----IAVFSQHHVDGLDLSSNPLLY------MMRCFP 147
P G V R+ VR I V SQ V + + Y M
Sbjct: 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEK 498
Query: 148 GVPEQKLRAHLGSF-----GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
V E + + G Q LSGGQK R+A A+ + P I+LLDE +
Sbjct: 499 AVKEANAYDFIMKLPHQFDTLVGERGAQ----LSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 203 NHLDLDAVEALIQG 216
+ LD ++ EA++Q
Sbjct: 555 SALDTES-EAVVQA 567
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 34/228 (14%)
Query: 56 ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ FS F YP P + + L+ + +A+VG +G GKST+++L+ P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 114 FRSAKVRIAVFSQHHVDGLD-----LSSNPLLYMMRCFPGVP----------EQKLRA-- 156
F K Q +V L +S P+L+ + E+ +RA
Sbjct: 1091 FLDGKE----IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 157 ------HLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
+ S N + T LSGGQK R+A A+ ++PHI+LLDE ++ LD ++
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 210 VEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255
+ + + L + G ++++H I + +L VV + HGT
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNA--DLIVVIQNGKVKEHGT 1252
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 31/194 (15%)
Query: 47 PDDRPGPPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
PD+ G + F + F YP + K LN + +A+VG +G GKST ++L+
Sbjct: 381 PDNIQGN--LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438
Query: 105 ELQPSSGTV------FRSAKVR-----IAVFSQHHVDGLDLSSNPLLY------MMRCFP 147
P G V R+ VR I V SQ V + + Y M
Sbjct: 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEK 498
Query: 148 GVPEQKLRAHLGSF-----GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
V E + + G Q LSGGQK R+A A+ + P I+LLDE +
Sbjct: 499 AVKEANAYDFIMKLPHQFDTLVGERGAQ----LSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 203 NHLDLDAVEALIQG 216
+ LD ++ EA++Q
Sbjct: 555 SALDTES-EAVVQA 567
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 55 IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
++ F D SF YP P ++ + L F + A+VGPNG GKST+ L+ QP+ G
Sbjct: 14 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 113 VFRSAK-----------VRIAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKLRA-HLG 159
+ K ++A Q V G L N + Y + P + E A G
Sbjct: 74 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN-IAYGLTQKPTMEEITAAAVKSG 132
Query: 160 SFGVTGNLAL-------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA--- 209
+ L + LSGGQ+ VA A+ +KP +++LD+ ++ LD ++
Sbjct: 133 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 192
Query: 210 VEALI 214
VE L+
Sbjct: 193 VEQLL 197
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 25/205 (12%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RI 121
G + N+N I+ R ++GP+G GK+T +++IAG PS+G ++ ++ ++
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------EQKLRAHLGSFGVTGNLALQPM 172
V + G+ + L + F + ++++R + V L + +
Sbjct: 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE--VAKILDIHHV 133
Query: 173 YT-----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-G 223
LSG Q+ RVA A+ K P ++LLDEP ++LD D+ AL++ + G
Sbjct: 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 224 ILMVSHDEHLISGSVEELWVVSEGK 248
+L+VSHD I + + V+ +GK
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGK 218
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 58/238 (24%)
Query: 56 ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ F + F YP P +F++ + I S A+VGP+G GKST+L L+ P+SGT+
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 114 FRSA-----------KVRIAVFSQ-------------------------HHVDGLDLSSN 137
+ +I SQ + + +N
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 461
Query: 138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197
+ + +R FP Q +G GV LSGGQK R+A A+ K P I+L
Sbjct: 462 AVAF-IRNFP----QGFNTVVGEKGV----------LLSGGQKQRIAIARALLKNPKILL 506
Query: 198 LDEPSNHLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKATPF 252
LDE ++ LD + E L+Q + L G +L+++H I + + V+ +GK T +
Sbjct: 507 LDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHRLSTIKNA-NMVAVLDQGKITEY 562
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 56/237 (23%)
Query: 56 ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ F + F YP P +F++ + I S A+VGP+G GKST+L L+ P+SGT+
Sbjct: 373 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 114 FRSA-----------KVRIAVFSQHHV---------------DGLDLSSNPL-------- 139
+ +I SQ + D +++ +
Sbjct: 433 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 492
Query: 140 -LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198
+ +R FP Q +G GV LSGGQK R+A A+ K P I+LL
Sbjct: 493 AVAFIRNFP----QGFNTVVGEKGV----------LLSGGQKQRIAIARALLKNPKILLL 538
Query: 199 DEPSNHLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKATPF 252
DE ++ LD + E L+Q + L G +L+++H I + + V+ +GK T +
Sbjct: 539 DEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHHLSTIKNA-NMVAVLDQGKITEY 593
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 55 IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
++ F D SF YP P + + L F + A+VGPNG GKST+ L+ QP+ G
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 156
V + + + H H + PLL Y + P + E A
Sbjct: 76 VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 157 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
+ G TGN LSGGQ+ VA A+ +KP +++LD+ ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLSGGQRQAVALARALIRKPRLLILDQATSAL 187
Query: 206 D 206
D
Sbjct: 188 D 188
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 37/181 (20%)
Query: 55 IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
++ F D SF YP P + + L F + A+VGPNG GKST+ L+ QP+ G
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 156
V + + + H H + PLL Y + P + E A
Sbjct: 76 VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 157 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
+ G TGN LSGGQ+ VA A+ +KP +++LD ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 206 D 206
D
Sbjct: 188 D 188
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 56 ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ F + F YP P + K L+F ++ +A+VGP+G GKST++ L+ G +
Sbjct: 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
Query: 114 F-----------RSAKVRIAVFSQ-----------HHVDGLDLSSNPLLYMMRCFPGVPE 151
F + +IA+ SQ + + GLD SS + +
Sbjct: 1137 FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196
Query: 152 QKLRAHL--GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
A L G G+ Q LSGGQK R+A A+ + P I+LLDE ++ LD ++
Sbjct: 1197 HNFIAELPEGFETRVGDRGTQ----LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 210 VEALIQGL 217
+ + + L
Sbjct: 1253 EKVVQEAL 1260
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 49/194 (25%)
Query: 56 ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
I+ + F YP P + + +N ++ +A+VG +G GKSTI+ L+ G +
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ--------KLRAHLGSFGVTG 165
+DG+D+ L ++ + V ++ + LG G+T
Sbjct: 476 --------------TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITR 521
Query: 166 N--LALQPMYT----------------------LSGGQKSRVAFAKITFKKPHIILLDEP 201
+A M LSGGQK R+A A+ + P I+LLDE
Sbjct: 522 EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 581
Query: 202 SNHLDLDAVEALIQ 215
++ LD ++ E ++Q
Sbjct: 582 TSALDAES-EGIVQ 594
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 28/143 (19%)
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------RIAVFSQHHVDG 131
++GP+G GK+T L++IAG +PS G ++ K+ IA+ Q +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA-- 91
Query: 132 LDLSSNPLLYMMRCFP----GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183
L + +Y FP VP +Q++R G+T L +P LSGGQ+ RV
Sbjct: 92 --LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRV 148
Query: 184 AFAKITFKKPHIILLDEPSNHLD 206
A + +KP + L+DEP ++LD
Sbjct: 149 ALGRAIVRKPQVFLMDEPLSNLD 171
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
I +VGPNGIGK+T +K++AG +P+ G V + +A Q+ + +Y +
Sbjct: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQY----IKAEYEGTVYEL- 423
Query: 145 CFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLD 199
+ KL ++ + L + +Y LSGG+ RVA A + I LLD
Sbjct: 424 -LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 482
Query: 200 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVS-----EGKAT 250
EPS +LD++ AV I+ L+ + L+V HD +I + L V G+A
Sbjct: 483 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 542
Query: 251 PFHGTFHDYKKMLQS 265
P G + L S
Sbjct: 543 PPMGMREGMNRFLAS 557
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS----QHHVDGLDLSS-NPL 139
+ +VGPNG GK+T +K++AG+L P+ S I F Q++ + L P+
Sbjct: 106 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 165
Query: 140 L--YMMRCFPGVPEQKLRAHLGSFGVTG------------NLALQPMYTLSGGQKSRVAF 185
+ + P + K+R L G N+ + ++ LSGG+ RVA
Sbjct: 166 VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI 225
Query: 186 AKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVSHD 230
A +K H DEPS++LD+ V +I+ L +L+V HD
Sbjct: 226 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-- 113
I F + F Y G ++++F + +A+VGP+G GKSTIL+L+ SSG +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 114 -------FRSAKVR--IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 164
A +R I V Q V D ++ + Y R G E + A + G+
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRY-GRVTAGNDEVEAAAQ--AAGIH 170
Query: 165 GNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 214
+ P LSGG+K RVA A+ K P IILLDE ++ LD A+
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230
Query: 215 QGL--VLFQGGILMVSHDEHLISGSVEELWVVSEG 247
L V ++V+H + + +++ V+ +G
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVV-NADQILVIKDG 264
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
I +VGPNGIGK+T +K++AG +P+ G V + +A Q+ + +Y +
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQY----IKAEYEGTVYEL- 437
Query: 145 CFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLD 199
+ KL ++ + L + +Y LSGG+ RVA A + I LLD
Sbjct: 438 -LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496
Query: 200 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVS-----EGKAT 250
EPS +LD++ AV I+ L+ + L+V HD +I + L V G+A
Sbjct: 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 556
Query: 251 PFHGTFHDYKKMLQS 265
P G + L S
Sbjct: 557 PPMGMREGMNRFLAS 571
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS----QHHVDGLDLSS-NPL 139
+ +VGPNG GK+T +K++AG+L P+ S I F Q++ + L P+
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179
Query: 140 L--YMMRCFPGVPEQKLRAHLGSFGVTG------------NLALQPMYTLSGGQKSRVAF 185
+ + P + K+R L G N+ + ++ LSGG+ RVA
Sbjct: 180 VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI 239
Query: 186 AKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVSHD 230
A +K H DEPS++LD+ V +I+ L +L+V HD
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 56 ISFSDASFGYPGGPIL---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
I + + Y G + KN+N I +++ GP+G GKST L +I +P+ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 113 VF------------RSAKVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPEQ 152
V+ K+R VF Q ++ L+ PL++ R E+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 153 KLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
+ RA L + A LSGGQ+ RVA A+ P IIL DEP+ LD
Sbjct: 122 RKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTG 181
Query: 211 EALIQGLVLFQ----GGILMVSHD 230
E + Q L +++V+HD
Sbjct: 182 EKIXQLLKKLNEEDGKTVVVVTHD 205
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 29/205 (14%)
Query: 55 IISFSDASFGYP-GGPILF--KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
+I + + Y G I++ KN+N I ++++GP+G GKST+L +I +P+ G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 112 TVF------------RSAKVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPE 151
V+ K+R VF Q ++ L+ PL++ R E
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 152 QKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
++ RA L + A LSGGQ+ RVA A+ P IIL D+P+ LD
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 210 VEALIQGLVLFQ----GGILMVSHD 230
E ++Q L +++V+HD
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHD 205
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
+A++GP+G GK+T L ++AG +P+SG ++ + + ++ G+ + L M
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91
Query: 145 CFPGVP------------EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192
F + +K + + NL + LSGGQ+ RVA A+ K+
Sbjct: 92 VFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151
Query: 193 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGI----LMVSHDEHLISGSVEELWVVSEGK 248
P ++L DEP ++LD + + + Q + + V+HD+ + V ++GK
Sbjct: 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGK 211
Query: 249 ATPF 252
+
Sbjct: 212 LVQY 215
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR--- 120
G P +N++ I+ + + G G GKST+L+++AG ++P+SG V + +
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74
Query: 121 -----IAVFSQHHVDGL--DLSSNPLLYMMRCF----PGVPEQKLRAHLGSFGVTGNLAL 169
I + Q+ D + + + + ++ F VP K
Sbjct: 75 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILM 226
P + LSGG+K RVA A + +P I++LDEP LD + L++ + ++ +++
Sbjct: 135 VPFF-LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 193
Query: 227 VSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259
+SHD + V+ + V+ +GK F GT ++
Sbjct: 194 ISHDIETVINHVDRVVVLEKGKKV-FDGTRMEF 225
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 17/212 (8%)
Query: 64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAV 123
G P +N++ I+ + + G G GKST+L+++AG ++P+SG V + +
Sbjct: 17 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 76
Query: 124 FSQHHVDGLDLSSNPLLYMMRCFPGV------------PEQKLRAHLGSFGVT-GNLALQ 170
+ ++ + R F V P ++ + G+ + +
Sbjct: 77 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 136
Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILMV 227
+ LSGG+K RVA A + +P I++LDEP LD + L++ + ++ ++++
Sbjct: 137 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 196
Query: 228 SHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259
SHD + V+ + V+ +GK F GT ++
Sbjct: 197 SHDIETVINHVDRVVVLEKGKKV-FDGTRMEF 227
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKV 119
KN+N I ++++GP+G GKST+L +I +P+ G V+ K+
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 120 RIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFGVTGNLAL 169
R VF Q ++ L+ PL++ R E++ RA L + A
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ----GGIL 225
LSGGQ+ RVA A+ P IIL D+P+ LD E ++Q L ++
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 226 MVSHD 230
+V+HD
Sbjct: 201 VVTHD 205
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--------- 106
I + SF Y G +L K++N + +VG NG GK+T+LK++AG L
Sbjct: 12 IELNSVSFRYNGDYVL-KDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLD 70
Query: 107 ---------QPSSGTVFRS-------AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150
+ + G VF++ A V V + GLD S MR
Sbjct: 71 GSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESE------MR------ 118
Query: 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
++++ L G++G A P+ LSGGQK R+A A + + + LDEP + LD +
Sbjct: 119 -KRIKKVLELVGLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 211 EALIQGLVLFQG---GILMVSHD 230
+ Q L + GI++V+H+
Sbjct: 177 REIFQVLESLKNEGKGIILVTHE 199
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 26/202 (12%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAK 118
L +++ I +A++GPNG GKST+L+L+ G L PS G A+
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--QPMYTLS 176
R AV Q+ S + ++ M R P Q +A T LAL + LS
Sbjct: 86 TR-AVMRQYSELAFPFSVSEVIQMGRA-PYGGSQDRQALQQVMAQTDCLALAQRDYRVLS 143
Query: 177 GGQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQGLVLFQG----GILM 226
GG++ RV A++ + P + LDEP++ LDL + ++ L +
Sbjct: 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203
Query: 227 VSHDEHLISGSVEELWVVSEGK 248
V HD +L + + + ++++GK
Sbjct: 204 VLHDLNLAALYADRIMLLAQGK 225
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 28/157 (17%)
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT--------------VFRSAK 118
K+L+ I + ++GP+G GK+T L+ IAG +P+ G VF K
Sbjct: 23 KDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK 82
Query: 119 VR-IAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQ----KLRAHLGSFGVTGNLAL 169
R +A Q + L + +Y FP VP+Q ++R G+T L
Sbjct: 83 ERDVAXVFQSYA----LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
+P LSGGQ+ RVA + ++P + L DEP ++LD
Sbjct: 139 KPR-ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
+ ++ V Q D + L+ + + + PG+ +K+ G
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
++ L+ Y LSGGQ+ R+A A+ P I++ DE ++ LD ++ +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
++ + G +++++H + + + + V+ +GK
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 216
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
+ ++ V Q D + L+ + + + PG+ +K+ G
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
++ L+ Y LSGGQ+ R+A A+ P I++ DE ++ LD ++ +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
++ + G +++++H + + + + V+ +GK
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 214
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
+ ++ V Q D + L+ + + + PG+ +K+ G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
++ L+ Y LSGGQ+ R+A A+ P I++ DE ++ LD ++ +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
++ + G +++++H + + + + V+ +GK
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 220
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
+S + F Y LF+ LNF ++ +A++G NG GKST+L L+ G +P G +
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-- 62
Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--------LGSFGVTGNL 167
I Q S ++ M R K ++H L +T +L
Sbjct: 63 EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HL 121
Query: 168 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
A + +LSGGQ+ + A+ + +ILLDEP++ LDL
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 55 IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
++ F D SF YP P + + L F + A+VGPNG GKST+ L+ QP+ G
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 156
V + + + H H + PLL Y + P + E A
Sbjct: 76 VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 157 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
+ G TGN L+ GQ+ VA A+ +KP +++LD ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLAVGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 206 D 206
D
Sbjct: 188 D 188
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
I +VGPNGIGK+T +K +AG +P+ G + + +A Q+ + ++ +
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPTEGKI--EWDLTVAYKPQY------IKADYEGTVYE 366
Query: 145 CFPGVPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLD 199
+ KL ++ + L + +Y LSGG+ RVA A + I LLD
Sbjct: 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426
Query: 200 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVS-----EGKAT 250
EPS +LD++ AV I+ L + L+V HD I + L V G+A
Sbjct: 427 EPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGEPGKYGRAL 486
Query: 251 PFHGTFHDYKKMLQS 265
P G + L S
Sbjct: 487 PPXGXREGXNRFLAS 501
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS----QHHVDGLDLSS-NPL 139
+ +VGPNG GKST +K++AG+L P+ S I F Q++ + L P+
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 140 L--YMMRCFPGVPEQKLRAHLGSFGVTG------------NLALQPMYTLSGGQKSRVAF 185
+ + P + K+ L TG N+ + + LSGG+ RVA
Sbjct: 110 VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169
Query: 186 AKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQGGILMVSHD 230
A + DEPS++LD L+A A I+ L +L+V HD
Sbjct: 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARA-IRRLSEEGKSVLVVEHD 217
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 28/217 (12%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG G GKST+ KLI P +G V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
+ ++ V Q D + L+ + + + PG+ +K+ G
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
++ L+ Y LSGGQ+ R+A A+ P I++ DE ++ LD ++ +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
++ + G +++++H + + + + V+ +GK
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 216
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 24/225 (10%)
Query: 56 ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 113
+ F + +F YPG + +N+N I +A+VG +G GKSTI LI G +
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 114 ----------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGS 160
S + ++A+ SQ+ D +N + Y + E A+
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMD 461
Query: 161 FGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
F + L + LSGGQ+ R+A A+ + I++LDE ++ LD ++ A+
Sbjct: 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 216 GLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258
L Q L+++H I + +E+ VV +G GT +D
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEKA-DEIVVVEDGVIVE-RGTHND 564
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
NL+ ++ ++GP G GK+ L+LIAG P SG + K + + H
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77
Query: 134 LSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVA 184
+ L M G+ +K++ +L ++ + TLSGG++ RVA
Sbjct: 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA 137
Query: 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG----GILMVSHDEHLISGSVEE 240
A+ P I+LLDEP + LD E + L + +L ++HD+ +
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR 197
Query: 241 LWVVSEGK 248
+ VV +GK
Sbjct: 198 IAVVMDGK 205
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
+ ++ V Q D + L+ + + + PG+ +K+ G
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
++ L+ Y LSGGQ+ R+A A+ P I++ DE ++ LD ++ +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 214 IQGL 217
++ +
Sbjct: 179 MRNM 182
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 48/230 (20%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 113
++S F Y + ++++F +S IA GP+G GKSTI L+ QP++G +
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 114 ----------FRSAKVRIAVFSQ--------------HHVDGLDLSSNPL-----LYMMR 144
+ + +I SQ + ++G D + L L R
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFAR 119
Query: 145 CF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
F +P+Q L +G GV +SGGQ+ R+A A+ + P I++LDE +
Sbjct: 120 SFVENMPDQ-LNTEVGERGVK----------ISGGQRQRLAIARAFLRNPKILMLDEATA 168
Query: 204 HLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKAT 250
LD ++ E+++Q + L +G L+++H I + ++++ + +G+ T
Sbjct: 169 SLDSES-ESMVQKALDSLMKGRTTLVIAHRLSTIVDA-DKIYFIEKGQIT 216
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
+ ++ V Q D + L+ + + + PG+ +K+ G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
++ L+ Y LSGGQ+ R+A A+ P I++ DE ++ LD ++ +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 214 IQGL 217
++ +
Sbjct: 185 MRNM 188
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------------- 114
+ K ++ + ++++G +G GKST+L ++ P+ G VF
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 115 -RSAKVRIAVFSQHH-VDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQ 170
R+ K+ VF H+ + L N ++ M++ E K R L G+ L+ +
Sbjct: 79 LRNRKLGF-VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ-GLVLFQGG--ILMV 227
P Y LSGG++ RVA A+ +P ++ DEP+ +LD + ++ L + +GG I+MV
Sbjct: 138 P-YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMV 196
Query: 228 SHDEHL 233
+H+ L
Sbjct: 197 THEREL 202
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 56 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+F + F Y P P++ N+N I I +VG +G GKST+ KLI P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
+ ++ V Q D + L+ + + + PG+ +K+ G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
++ L+ Y LSGGQ+ R+A A+ P I++ D+ ++ LD ++ +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
++ + G +++++H + + + + V+ +GK
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 220
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 56 ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI------AGELQ 107
I FSD +F YP K++NF I + A+VG G GKSTI KL+ G+++
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
Query: 108 PSSGTVFR----SAKVRIAVFSQHHVDGLDLSSNPLLY--MMRCFPGVPEQKLRAHLGSF 161
V + S + I + Q + + +LY + V + A L F
Sbjct: 78 IGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDF 137
Query: 162 ---------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 212
+ GN ++ LSGG++ R+A A+ K P I++ DE ++ LD E
Sbjct: 138 IEALPKKWDTIVGNKGMK----LSGGERQRIAIARCLLKDPKIVIFDEATSSLD-SKTEY 192
Query: 213 LIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
L Q V +++++H IS S E + ++++GK GT D K+
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLLKL 243
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 30/237 (12%)
Query: 56 ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 113
+ F + +F YPG + +N+N I +A+VG +G GKSTI LI G +
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 114 ----------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGS 160
S + ++A+ SQ+ D +N + Y + E A+
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 461
Query: 161 FGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
F + L + LSGGQ+ R+A A+ + I++LDE ++ LD ++ A+
Sbjct: 462 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 216 GLVLFQGG--ILMVSHDEHLISGS-----VEELWVVSEGKATPF---HGTFHDYKKM 262
L Q L+++H I + VE+ +V G + HG + KM
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 578
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 120
G ++ K++N I + VGP+G GKST+L++IAG +SG +F K
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 121 ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 173
+ + Q + LS + G ++ + + LA +P
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
LSGGQ+ RVA + +P + LLDEP ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAV-FSQ 126
+N+N ++ ++ ++GPNG GK+T+L+ I+G L P SG +F + K+R + +S
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRKIRNYIRYST 78
Query: 127 HHVDGLDL--SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 184
+ + ++ + N ++Y+ G+ L + + + + +Y LS GQ V
Sbjct: 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR 138
Query: 185 FAKITFKKPHIILLDEPSNHLD 206
+ +P I+ LDEP ++D
Sbjct: 139 TSLALASQPEIVGLDEPFENVD 160
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 120
G ++ K++N I + VGP+G GKST+L++IAG +SG +F K
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 121 ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 173
+ + Q + LS + G ++ + + LA +P
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
LSGGQ+ RVA + +P + LLDEP ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 53/209 (25%)
Query: 76 NFGIDLDSRI-----AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130
NF +++D + ++GP G GKS L+LIAG ++P G V ++
Sbjct: 13 NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV--------------RLN 58
Query: 131 GLDLSSNPLLYMMRCFPGVPEQ-KLRAHLGSF--------------------------GV 163
G D++ PL R VP+ L HL + G+
Sbjct: 59 GADIT--PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI 116
Query: 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
L +P LSGG++ RVA A+ +P ++LLDEP + +DL L++ L Q
Sbjct: 117 AHLLDRKPA-RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175
Query: 224 ----ILMVSHDEHLISGSVEELWVVSEGK 248
IL V+HD + +E+ V+ G+
Sbjct: 176 FDVPILHVTHDLIEAAMLADEVAVMLNGR 204
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIA 122
LN I + ++GP+G GK+T L++IAG +P+ G ++ + + +
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM- 87
Query: 123 VFSQH----HVDGLDLSSNPLLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSG 177
VF + H+ + + PL ++ FP ++++R + L P LSG
Sbjct: 88 VFQSYAVWPHMTVYENIAFPL--KIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-QLSG 144
Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLD 206
GQ+ RVA A+ +P ++L+DEP ++LD
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIA 122
LN I + ++GP+G GK+T L++IAG +P+ G ++ + + +
Sbjct: 30 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM- 88
Query: 123 VFSQH----HVDGLDLSSNPLLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSG 177
VF + H+ + + PL ++ FP ++++R + L P LSG
Sbjct: 89 VFQSYAVWPHMTVYENIAFPL--KIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-QLSG 145
Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLD 206
GQ+ RVA A+ +P ++L+DEP ++LD
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 120
G ++ K++N I + VGP+G GKST+L++IAG +SG +F K
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 121 ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 173
+ + Q + LS + G ++ + + LA +P
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
LSGGQ+ RVA + +P + LLD+P ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 59/233 (25%)
Query: 56 ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+ D +F Y G P L +++F I +A+VG +G GKSTI L SG++
Sbjct: 342 VDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--QP 171
+DG D+ L + R F V + HL + + N+A +
Sbjct: 401 C--------------LDGHDVRDYKLTNLRRHFALVSQN---VHLFNDTIANNIAYAAEG 443
Query: 172 MYT----------------------------------LSGGQKSRVAFAKITFKKPHIIL 197
YT LSGGQ+ RVA A+ + +++
Sbjct: 444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503
Query: 198 LDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
LDE ++ LD ++ A+ L Q +L+++H I + +E+ VV EG+
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA-DEILVVDEGE 555
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
+ D S GY P+L + + I+ + + GPNGIGK+T+LK I+ L+P G +
Sbjct: 11 LEIRDLSVGY-DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68
Query: 116 S----AKVRIAVF--SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL 169
+ KV+ +F + + +S L + GV K + + L L
Sbjct: 69 NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-NEIMDALESVEVLDL 127
Query: 170 -QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGILM 226
+ + LS G RV A I +LD+P +D D+ +++ + +L + GI++
Sbjct: 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 227 VSHDEHLISGSVEE 240
+S E L V E
Sbjct: 188 ISSREELSYCDVNE 201
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130
+ +++ +D + ++G +G GK+T+L+ +AG QP SG + S K +FS++
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT---IFSKN--T 73
Query: 131 GLDLSSNPLLYMMR---CFPGVP-------------------EQKLRAHLGSFGVTGNLA 168
L + L Y+++ FP + Q++ A L G++ LA
Sbjct: 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELA 132
Query: 169 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQGGI 224
+ + LSGGQ+ R A A+ P +ILLDEP + LD E +I L
Sbjct: 133 GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSA 192
Query: 225 LMVSHDEHLISGSVEELWVVSEGK 248
+ VSHD + + V+ +G+
Sbjct: 193 VFVSHDREEALQYADRIAVMKQGR 216
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 54/244 (22%)
Query: 56 ISFSDASFGY--PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
+SF + F Y P+L +NF + S +A++G G GKST++ LI + P G V
Sbjct: 342 VSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ--------KLRAHLGSFGVTG 165
VD LD+ + L + VP++ K G T
Sbjct: 401 --------------EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD 446
Query: 166 N---------------LALQPMY---------TLSGGQKSRVAFAKITFKKPHIILLDEP 201
+ ++L Y SGGQK R++ A+ KKP +++LD+
Sbjct: 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC 506
Query: 202 SNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV-EELWVVSEGKATPFHGTFHDYK 260
++ +D + ++ GL + G + + + + +++ V+ EGK F GT +K
Sbjct: 507 TSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGF-GT---HK 562
Query: 261 KMLQ 264
++L+
Sbjct: 563 ELLE 566
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 48/193 (24%)
Query: 56 ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
I SF Y PIL K++N I+ +A VG +G GKST++ LI +SG +
Sbjct: 340 IDIDHVSFQYNDNEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398
Query: 114 ---------FRSAKVR--IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL-------R 155
F + +R I + Q D + S ++ P ++++
Sbjct: 399 LIDGHNIKDFLTGSLRNQIGLVQQ---DNILFSDTVKENILLGRPTATDEEVVEAAKMAN 455
Query: 156 AH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
AH +G GV LSGGQK R++ A+I P I++LDE +
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVK----------LSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 203 NHLDLDAVEALIQ 215
+ LDL++ E++IQ
Sbjct: 506 SALDLES-ESIIQ 517
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 52/231 (22%)
Query: 78 GIDLD----SRIAMVGPNGIGKSTILKLIAGELQPS----SGTVF---------RSAKVR 120
GI LD S A+VG + GKSTI++ + L P+ SG V R ++R
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 121 ------IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE----------------QKLR-AH 157
IA+ Q L NP + ++ F E +KLR
Sbjct: 86 KIRWKEIALVPQAAQQSL----NPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVR 141
Query: 158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
L V + LQ LSGG K RV A P +++LDEP++ LD+ +IQ L
Sbjct: 142 LNPEAVLNSYPLQ----LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLL 197
Query: 218 VLFQG----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264
+ ++ V+HD + + +++ V+ G ++ TF +K L
Sbjct: 198 KELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLH 248
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 82 DSRI-AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL 140
DS I M+G NG GK+T++KL+AG L+P G + L++S P
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEG---------------QDIPKLNVSMKPQK 421
Query: 141 YMMRCFPGVPEQ----KLRAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAK 187
+ FPG Q K+R + ++ Q + LSGG+ RVA
Sbjct: 422 IAPK-FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL 480
Query: 188 ITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV 244
I L+DEPS +LD + +I+ +L + + +++ + + +V
Sbjct: 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV 540
Query: 245 SEG 247
EG
Sbjct: 541 FEG 543
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSG------------TVFRSAKVRIAVFSQHHVDGL 132
+ +VG NGIGKST LK++AG+ +P+ G FR ++++ F++ D +
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQ-NYFTKMLEDDI 164
Query: 133 DLSSNPLLY--MMRCFPGVPEQ-----KLRAHLGSFGVT--------GNLALQPMYTLSG 177
P + R G ++ KLR V N+ + + LSG
Sbjct: 165 KAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSG 224
Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQGGILMVSHD 230
G+ R A ++ + + DEPS++LD L+A + +I+ L+ ++ V HD
Sbjct: 225 GELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHD 280
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHV----DG-----LDLS 135
I ++GPNGIGK+T +++ GE+ G+V + + +I + + DG L+ +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSV--TPEKQILSYKPQRIFPNYDGTVQQYLENA 354
Query: 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195
S L F ++L H L + LSGG+ ++ A K+ +
Sbjct: 355 SKDALSTSSWFFEEVTKRLNLH--------RLLESNVNDLSGGELQKLYIAATLAKEADL 406
Query: 196 ILLDEPSNHLDLD 208
+LD+PS++LD++
Sbjct: 407 YVLDQPSSYLDVE 419
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 23/169 (13%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPSSG------------TVFRSAKVR---IAVFSQ--- 126
+ ++G NG+GK+T+LK++AGE+ P+ G FR ++ ++S
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87
Query: 127 --HHVDGLDLSSNPLL-YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183
H + ++ +S L + + E+ + + NL + LSGG R+
Sbjct: 88 IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147
Query: 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGILMVSHD 230
A ++ + + D+PS++LD+ + + + +L +++V HD
Sbjct: 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 43/219 (19%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I + ++ S P G I +G+ +G +G GKST+++ + +P+ G+V
Sbjct: 18 IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 63
Query: 115 --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLR- 155
A+ +I + QH +L S+ ++ P P+ +++
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 156 --AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
L S G+ LSGGQK RVA A+ P ++L DE ++ LD ++
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 214 IQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 248
++ L IL+++H+ ++ + + V+S G+
Sbjct: 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 87 MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
+VGPNG GKST+L AG QP + A SQ +
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
P+ + + K R L + V G LAL + LSGG+ RV A + +
Sbjct: 88 TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGGILMV--SHDEHLISGSVEEL 241
++LLDEP N LD+ AL + L L Q G+ +V SHD +
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRA 203
Query: 242 WVVSEGK 248
W++ GK
Sbjct: 204 WLLKGGK 210
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 87 MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
+VGPNG GKST+L AG QP + A SQ +
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
P+ + + K R L + V G LAL + LSGG+ RV A + +
Sbjct: 88 TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGGILMV--SHDEHLISGSVEEL 241
++LLDEP N LD+ AL + L L Q G+ +V SHD +
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRA 203
Query: 242 WVVSEGK 248
W++ GK
Sbjct: 204 WLLKGGK 210
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 56 ISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I+ +A+F + P + F I + +A+VG G GKS++L + E+ G V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 115 ---------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL-----RAHLGS 160
+ A ++ ++ + G L +++ +P+ ++ R +G
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGE 123
Query: 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
GV LSGGQK RV+ A+ + I L D+P + +D
Sbjct: 124 KGVN----------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 76/187 (40%), Gaps = 32/187 (17%)
Query: 87 MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
+VGPNG GKST+L +AG QP + A SQ +
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
P+ + + K R L + V G LAL + LSGG+ RV A + +
Sbjct: 88 TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGG--ILMVSHDEHLISGSVEEL 241
++LLD+P N LD+ AL + L L Q G I+M SHD +
Sbjct: 144 ITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203
Query: 242 WVVSEGK 248
W++ GK
Sbjct: 204 WLLKGGK 210
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I + ++ S P G I +G+ +G +G GKST+++ + +P+ G+V
Sbjct: 41 IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 115 --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLR- 155
A+ +I QH +L S+ ++ P P+ +++
Sbjct: 87 VDGQELTTLSESELTKARRQIGXIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 156 --AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
L S G+ LSGGQK RVA A+ P ++L D+ ++ LD ++
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 214 IQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 248
++ L IL+++H+ ++ + + V+S G+
Sbjct: 203 LELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGE 241
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 43/219 (19%)
Query: 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
I + ++ S P G I +G+ +G +G GKST+++ + +P+ G+V
Sbjct: 41 IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 115 --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLR- 155
A+ +I + QH +L S+ ++ P P+ +++
Sbjct: 87 VDGQELTTLSESELTKARRQIGMIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 156 --AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
L S G+ LSGGQK RVA A+ P ++L D+ ++ LD ++
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 214 IQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 248
++ L IL+++H+ ++ + + V+S G+
Sbjct: 203 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 241
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 56 ISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL------IAGELQ- 107
++ D + Y GG + +N++F I R+ ++G G GKST+L GE+Q
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQI 79
Query: 108 ----PSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 157
S T+ + K ++ +FS LD N + E LR+
Sbjct: 80 DGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD--PNAAHSDQEIWKVADEVGLRSV 137
Query: 158 LGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
+ F G + + LS G K + A+ K I+LLDEPS HLD
Sbjct: 138 IEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKVRIAVFS 125
G + K +++ I + + G NG GK+T+L ++ +SGTV F ++ +
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSA 92
Query: 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------------------ 167
+ + S+ LL + V + + S GV ++
Sbjct: 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXS 152
Query: 168 --ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211
A Q + LS G+K RV A+ +P +++LDEP+ LD A E
Sbjct: 153 AKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 35/165 (21%)
Query: 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
G + K ++F I+ ++GPNG GK+T L++I+ ++PSSG V VF +
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--------TVFGK 77
Query: 127 HHVDGLDLSSNPLLYM------MRCFPGVPEQKLRAHLGSFGVTGNLALQPMY------- 173
+ V+ + Y+ R G+ + LR + F + + ++ M
Sbjct: 78 NVVEEPHEVRKLISYLPEEAGAYRNMQGI--EYLR-FVAGFYASSSSEIEEMVERATEIA 134
Query: 174 -----------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
T S G ++ A+ P + +LDEP++ LD+
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 16 SLVQSRIKALERMGHV---DEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILF 72
+++Q + + ER+ + +E +DPD + R I F + F Y +
Sbjct: 318 NMIQMALASAERIFEILDLEEEKDDPD------AVELREVRGEIEFKNVWFSYDKKKPVL 371
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRI 121
K++ F I ++A+VGP G GK+TI+ L+ G + S + I
Sbjct: 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431
Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR-----AHLGSFGVTGNLALQPMYT-- 174
+ Q D + S+ + PG +++++ H F + + T
Sbjct: 432 GIVLQ---DTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488
Query: 175 ---LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
LS GQ+ +A + P I++LDE ++++D
Sbjct: 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 33/197 (16%)
Query: 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFS 125
G + K +N + A++GPNG GKST+ K++AG E G + + + +
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 126 QHHV-DGLDLSSNPLLYMMRCFPGVP-----EQKLRAHLG------SFGVTGNLALQPM- 172
GL L+ Y + PGV L+A LG F AL+ +
Sbjct: 75 DERARKGLFLAFQ---YPVEV-PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD 130
Query: 173 -----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 221
SGG+K R ++ +P +LDE + LD+DA++ + +G+ +
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 222 G---GILMVSHDEHLIS 235
G G L+++H + +++
Sbjct: 191 GPNFGALVITHYQRILN 207
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LIAGELQPSSGTVFRSA 117
+ K +N I + ++GP+G GKST L+ +I G + T
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 118 KVRIAVFSQH-----HVDGLD-LSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQ 170
+ + + Q H+ L+ ++ P+ +R +P E K L G+
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPM--KVRKWPREKAEAKAMELLDKVGLKDKAHAY 135
Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
P +LSGGQ RVA A+ +P I+L DEP++ LD + V
Sbjct: 136 P-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 174
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LIAGELQPSSGTVFRSA 117
+ K +N I + ++GP+G GKST L+ +I G + T
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 118 KVRIAVFSQH-----HVDGLD-LSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQ 170
+ + + Q H+ L+ ++ P+ +R +P E K L G+
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPM--KVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
P +LSGGQ RVA A+ +P I+L DEP++ LD + V
Sbjct: 157 P-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 87 MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
+VGPNG GKST+L +AG QP + A SQ +
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
P+ + + K R L + V G LAL + LSGG+ RV A + +
Sbjct: 88 TPVWHYLTLH---QHDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGG--ILMVSHDEHLISGSVEEL 241
++LLD+P LD+ AL + L L Q G I+M SHD +
Sbjct: 144 ITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203
Query: 242 WVVSEGK 248
W++ GK
Sbjct: 204 WLLKGGK 210
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 36/147 (24%)
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR----------I 121
++GPNG GKST++ +I G L+ G V+ K VR +
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 122 AVFSQHHVDGLDLSSNPL--LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY-----T 174
V + ++ +PL L+ + P E +A F + L L +Y
Sbjct: 98 TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKA----FKILEFLKLSHLYDRKAGE 153
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEP 201
LSGGQ V + P +I++DEP
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 86 AMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHHV-DGLDLS------- 135
A++GPNG GKST+ +AG + + + GTV K +A+ + +G+ ++
Sbjct: 31 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 90
Query: 136 ---SNPLLYMMRCFPGVPEQKLRAHLGSFG----VTGNLALQPM----------YTLSGG 178
SN ++ V + + L F + +AL M SGG
Sbjct: 91 PGVSNQF-FLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 149
Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG---ILMVSHDEHLI 234
+K R ++ +P + +LDE + LD+DA++ + G+ + G ++V+H + ++
Sbjct: 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL 208
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 86 AMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHHV-DGLDLS------- 135
A++GPNG GKST+ +AG + + + GTV K +A+ + +G+ ++
Sbjct: 50 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109
Query: 136 ---SNPLLYMMRCFPGVPEQKLRAHLGSFG----VTGNLALQPM----------YTLSGG 178
SN ++ V + + L F + +AL M SGG
Sbjct: 110 PGVSNQF-FLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168
Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG---ILMVSHDEHLI 234
+K R ++ +P + +LDE + LD+DA++ + G+ + G ++V+H + ++
Sbjct: 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL 227
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 36/147 (24%)
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR----------I 121
++GPNG GKST++ +I G L+ G V+ K VR +
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 122 AVFSQHHVDGLDLSSNPL--LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY-----T 174
V + ++ +PL L+ + P E +A F + L L +Y
Sbjct: 98 TVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKA----FKILEFLKLSHLYDRKAGE 153
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEP 201
LSGGQ V + P +I++D+P
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDQP 180
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 170 QPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEAL---IQGLVLFQGG 223
QP TLSGG+ RV A K+ + +LDEP+ L D + L I GLV
Sbjct: 859 QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNT 918
Query: 224 ILMVSHDEHLISGSVEELWVV 244
++++ H+ +I S W++
Sbjct: 919 VIVIEHNLDVIKTSD---WII 936
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 36/147 (24%)
Query: 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR----------I 121
++GPNG GKST++ +I G L+ G V+ K VR +
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 122 AVFSQHHVDGLDLSSNPL--LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY-----T 174
V + + +PL L+ + P E +A F + L L +Y
Sbjct: 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA----FKILEFLKLSHLYDRKAGE 153
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEP 201
LSGGQ V + P +I++DEP
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 104 GELQPSSGTVFRSAKVRIAVFSQH-----HVDGLD-LSSNPLLYMMRCFPGVPEQKLRAH 157
G+L+ + R + R+ + QH H+ L+ + P+ + E+ L+ +
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALK-Y 136
Query: 158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALI 214
L G+ + LSGGQ+ RV+ A+ +P ++L DEP++ LD + V ++
Sbjct: 137 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM 196
Query: 215 QGLVLFQGGILMVSHD 230
Q L +++V+H+
Sbjct: 197 QQLAEEGKTMVVVTHE 212
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 21/173 (12%)
Query: 105 ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 164
E G + + I ++ D LD++ + L + P + ++ L G+
Sbjct: 738 ECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSI--KRTLQVLHDVGL- 794
Query: 165 GNLAL-QPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGL--- 217
G + L QP TLSGG+ R+ A K+ + +LDEP+ L + V L++ L
Sbjct: 795 GYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854
Query: 218 -------VLFQGGILMVSHDEHLI----SGSVEELWVVSEGKATPFHGTFHDY 259
++ + + ++ + +H+I G E ++V+ G H Y
Sbjct: 855 VDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPH---IILLDEPSNHLDLDAVEALIQGL-VLFQGG-- 223
QP TLSGG+ RV A ++ + + +LDEP+ L +D + L+ L L G
Sbjct: 539 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDT 598
Query: 224 ILMVSHDEHLI 234
+L++ H+ +I
Sbjct: 599 VLVIEHNLDVI 609
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPH---IILLDEPSNHLDLDAVEALIQGL-VLFQGG-- 223
QP TLSGG+ RV A ++ + + +LDEP+ L +D + L+ L L G
Sbjct: 841 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDT 900
Query: 224 ILMVSHDEHLI 234
+L++ H+ +I
Sbjct: 901 VLVIEHNLDVI 911
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPH---IILLDEPSNHLDLDAVEALIQGL-VLFQGG-- 223
QP TLSGG+ RV A ++ + + +LDEP+ L +D + L+ L L G
Sbjct: 841 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDT 900
Query: 224 ILMVSHDEHLI 234
+L++ H+ +I
Sbjct: 901 VLVIEHNLDVI 911
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 198 LDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPF 252
+D P+N DL +E L++GL +F+ I + + G +++L + E K PF
Sbjct: 65 IDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF 120
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 43/167 (25%)
Query: 65 YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVF 124
Y G K ++ + + ++G NG GK+T L IAG ++ G +
Sbjct: 15 YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII---------- 64
Query: 125 SQHHVDGLDLSSNPLLYMMRCFPGV--------PEQKLRAHL--GSF------GVTGNLA 168
+G D+++ P + R + PE + +L G++ G+ +L
Sbjct: 65 ----FNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLE 120
Query: 169 L-------------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
Q TLSGG++ +A + +P ++ DEPS
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPS 167
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 170 QPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
+P+ LSGG++ R+A + + +++LDEP+ +LD + LI + +
Sbjct: 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112
Query: 224 I---LMVSHDEHL 233
I ++VSHDE L
Sbjct: 113 IPQVILVSHDEEL 125
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 170 QPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
+P+ LSGG++ R+A + + +++LDEP+ +LD + LI + +
Sbjct: 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 303
Query: 224 I---LMVSHDEHL 233
I ++VSHDE L
Sbjct: 304 IPQVILVSHDEEL 316
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 170 QPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
+P+ LSGG++ R+A + + +++LDEP+ +LD + LI + +
Sbjct: 79 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 138
Query: 224 I---LMVSHDEHL 233
I ++VSHDE L
Sbjct: 139 IPQVILVSHDEEL 151
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 170 QPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
+P+ LSGG++ R+A + + +++LDEP+ +LD + LI + +
Sbjct: 84 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 143
Query: 224 I---LMVSHDEHL 233
I ++VSHDE L
Sbjct: 144 IPQVILVSHDEEL 156
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 170 QPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
+P+ LSGG++ R+A + + +++LDEP+ +LD + LI + +
Sbjct: 264 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 323
Query: 224 I---LMVSHDEHL 233
I ++VSHDE L
Sbjct: 324 IPQVILVSHDEEL 336
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 85 IAMVGPNGIGKSTILKLIAGE----LQPSSGT----VFRSAKVRIAVFSQHHVDGLDLSS 136
+A+VG +GKSTI IAGE ++ + G ++ SA+ F+ G+D+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 137 NPLLYMMR 144
P L +R
Sbjct: 66 EPFLAQIR 73
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAGEL---QPSSGTVFRSAKVRIAVFSQ 126
LF NL FG + + RI MVG +G GK+T+L KL GE+ P+ G + + + F+
Sbjct: 8 LFSNL-FG-NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTV 65
Query: 127 HHVDGLDLSSNPLLYMMRCFPGV 149
V G D + + R GV
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGV 88
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAGEL---QPSSGTVFRSAKVRIAVFSQ 126
LF NL FG + + RI MVG +G GK+T+L KL GE+ P+ G + + + F+
Sbjct: 8 LFSNL-FG-NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTV 65
Query: 127 HHVDGLDLSSNPLLYMMRCFPGV 149
V G D + + R GV
Sbjct: 66 WDVGGQDRIRSLWRHYYRNTEGV 88
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 85 IAMVGPNGIGKSTILKLIAGE----LQPSSGT----VFRSAKVRIAVFSQHHVDGLDLSS 136
+A+VG +GKSTI IAGE ++ + G ++ SA+ F+ G+D+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 137 NPLLYMMR 144
P L +R
Sbjct: 86 EPFLAQIR 93
>pdb|2H92|A Chain A, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|B Chain B, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|C Chain C, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
Length = 219
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRS 116
IA+ GP GKSTI K +A EL +G ++R+
Sbjct: 6 IALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 147 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192
P PE+K+R + G FG ++ L PM R F ITFK+
Sbjct: 9 PDTPEEKIREYFGGFGEVESIEL-PM---DNKTNKRRGFCFITFKE 50
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 86 AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS 125
A+VGPNG GKS I I L S R K+ +F+
Sbjct: 28 AVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKMEDIIFA 67
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 147 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192
P PE+K+R + G FG ++ L PM R F ITFK+
Sbjct: 11 PDTPEEKIREYFGGFGEVESIEL-PM---DNKTNKRRGFCFITFKE 52
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 170 QPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
+P+ L GG++ R+A + + +++LDEP+ +LD + LI + +
Sbjct: 49 RPLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 108
Query: 224 I---LMVSHDEHL 233
I ++VSHDE L
Sbjct: 109 IPQVILVSHDEEL 121
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 224 ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264
+ + +H ++ G E++ +VSEGK PF HD++K Q
Sbjct: 7 LWIDAHQARVLIGFEEDILIVSEGKMAPFT---HDFRKAQQ 44
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP-------SSGTVFRSAKV-RIAVFSQHH 128
I MVG NG+GK+T + +A + + ++G FR+A V ++ V+ Q +
Sbjct: 101 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 152
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 23/107 (21%)
Query: 26 ERMGHVDEVVNDPDYKFEFPTPDDRP-----------GPPIISFSDASFGYPGG------ 68
E+ G VDE ND D + E P+ + P + +SD + G G
Sbjct: 90 EQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVA-GLEGAKEALKE 148
Query: 69 ----PILFKNLNFGIDLDSR-IAMVGPNGIGKSTILKLIAGELQPSS 110
PI F +L G R I + GP G GKS + K +A E S+
Sbjct: 149 AVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 195
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAGELQPSSGTV 113
LF NL FG + + RI MVG +G GK+T+L KL GE+ + T+
Sbjct: 8 LFSNL-FG-NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTI 49
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP-------SSGTVFRSAKV-RIAVFSQHH 128
I MVG NG+GK+T + +A + + ++G FR+A V ++ V+ Q +
Sbjct: 102 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 153
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP-------SSGTVFRSAKV-RIAVFSQHH 128
I MVG NG+GK+T + +A + + ++G FR+A V ++ V+ Q +
Sbjct: 96 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 147
>pdb|2D3J|A Chain A, Nmr Structure Of The Wif Domain From Human Wif-1
Length = 157
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 228 SHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264
+H ++ G E++ +VSEGK PF HD++K Q
Sbjct: 18 AHQARVLIGFEEDILIVSEGKMAPFT---HDFRKAQQ 51
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
+NL F + I + GP+G GKST+LK + E S G
Sbjct: 8 ENLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFG 46
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQP-------SSGTVFRSAKV-RIAVFSQHH 128
I MVG NG+GK+T + +A + + ++G FR+A V ++ V+ Q +
Sbjct: 296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 347
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 84 RIAMVGPNGIGKSTIL-KLIAGELQ---PSSGTVFRSAKVRIAVFSQHHVDGLD 133
RI MVG + GK+TIL KL GE+ P+ G + + + F+ V GLD
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLD 57
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAKVRIAVFSQHHVD 130
I + GP+G GK T+ K +A LQ SG ++R V HHVD
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR---VLALAALHHHVD 53
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAKVRIAVFSQHHVD 130
I + GP+G GK T+ K +A LQ SG ++R V HHVD
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR---VLALAALHHHVD 53
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAKVRIAVFSQHHVD 130
I + GP+G GK T+ K +A LQ SG ++R V HHVD
Sbjct: 8 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR---VLALAALHHHVD 53
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
GVP K + F + G QP+Y L GG+ F H++ + +P N
Sbjct: 95 GVPTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHE------EFPVTHVLSIADPEN 144
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+GK+T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105
N G + + +VGP G GK+ + K +AGE
Sbjct: 38 NLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67
>pdb|3JR1|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
Resolution
pdb|3JR1|B Chain B, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
Resolution
Length = 312
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 222 GGILMVSHDEHLISGSVEELWVVSEGKATPF 252
G + H E L SG E+W++++ T F
Sbjct: 33 GAYYFIKHKEKLYSGEXNEIWLINDEVQTVF 63
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 84 RIAMVGPNGIGKSTILKLIAG 104
R+ ++G G+GKST+ + AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 84 RIAMVGPNGIGKSTILKLIAG 104
R+ ++G G+GKST+ + AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 84 RIAMVGPNGIGKSTILKLIAG 104
R+ ++G G+GKST+ + AG
Sbjct: 39 RVVLIGEQGVGKSTLANIFAG 59
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107
K L FG+ + GP G GK+ + K IA E Q
Sbjct: 40 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 84 RIAMVGPNGIGKSTILKLIAG 104
R+ ++G G+GKST+ + AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|2NXF|A Chain A, Crystal Structure Of A Dimetal Phosphatase From Danio
Rerio Loc 393393
Length = 322
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 10 YNAKRASLVQSRIKALERMGHV--DEVVNDPDYKFEF-PTPDDR 50
YN R SL+ SR+ + +R G +++ D Y +EF P P+ R
Sbjct: 100 YNFSRPSLLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFR 143
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQ 107
+ MVGP G GK+ + K IAGE +
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAK 70
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
+L K L+F D +R+ +VG GKSTI+ + G+ S G
Sbjct: 89 VLLKKLSF--DRLARVLIVGVPNTGKSTIINKLKGKRASSVG 128
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE----LQPSSGTVFRSAK 118
+ + L D + RI ++G + GK+T+LK +A E + P+ G +S +
Sbjct: 6 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ 57
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 84 RIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR---SAKVRIAVFSQHHVDGLDLSSN 137
R+ ++GP G GK T +A +L Q S+G +FR ++ V ++ ++D DL +
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 138 PL 139
L
Sbjct: 62 DL 63
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 215 QGLVLFQGGILMVSHDEHLISGSVEELWVV----SEGKATPFHGTFHDYKKMLQS 265
+G+ +Q G+L+ + D HL G+V++++++ GK P + ++ + ++QS
Sbjct: 63 RGIRGYQTGLLLENLDAHLYGGAVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQS 117
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE----LQPSSGTVFRSAK 118
+ + L D + RI ++G + GK+T+LK +A E + P+ G +S +
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQ 56
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 84 RIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR---SAKVRIAVFSQHHVDGLDLSSN 137
R+ ++GP G GK T +A +L Q S+G +FR ++ V ++ ++D DL +
Sbjct: 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81
Query: 138 PL 139
L
Sbjct: 82 DL 83
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 85 IAMVGPNGIGKSTILKLIAGELQPS 109
+ + GP G+G++T+ +IA ELQ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN 78
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107
K L FG+ + GP G GK+ + K IA E Q
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,529,716
Number of Sequences: 62578
Number of extensions: 369183
Number of successful extensions: 1296
Number of sequences better than 100.0: 160
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 249
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)