Query 024529
Match_columns 266
No_of_seqs 398 out of 2423
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:16:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 4.4E-57 9.6E-62 373.2 20.4 202 54-260 1-224 (240)
2 COG1120 FepC ABC-type cobalami 100.0 1.5E-54 3.2E-59 372.8 21.1 202 55-259 2-226 (258)
3 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.1E-54 9E-59 368.4 23.6 204 54-261 3-227 (254)
4 COG1124 DppF ABC-type dipeptid 100.0 6.3E-53 1.4E-57 354.5 21.5 204 54-258 2-228 (252)
5 COG0488 Uup ATPase components 100.0 3.5E-52 7.5E-57 392.7 28.1 262 1-264 263-528 (530)
6 COG1127 Ttg2A ABC-type transpo 100.0 9.4E-53 2E-57 352.3 21.0 206 53-261 6-235 (263)
7 PRK10636 putative ABC transpor 100.0 9.2E-52 2E-56 401.8 30.5 258 3-262 261-518 (638)
8 COG1116 TauB ABC-type nitrate/ 100.0 2E-52 4.3E-57 354.1 21.5 190 54-247 2-207 (248)
9 COG1125 OpuBA ABC-type proline 100.0 1.3E-52 2.8E-57 353.7 19.2 201 55-259 1-223 (309)
10 PLN03073 ABC transporter F fam 100.0 2.9E-51 6.2E-56 400.8 31.3 261 3-263 456-716 (718)
11 COG3638 ABC-type phosphate/pho 100.0 2.6E-52 5.7E-57 348.8 18.7 205 54-262 2-238 (258)
12 COG1135 AbcC ABC-type metal io 100.0 1.6E-51 3.5E-56 355.9 20.6 201 55-259 1-229 (339)
13 COG1136 SalX ABC-type antimicr 100.0 5.3E-51 1.1E-55 344.5 22.5 193 55-250 1-221 (226)
14 COG1122 CbiO ABC-type cobalt t 100.0 1.6E-50 3.4E-55 346.6 23.4 206 54-262 2-229 (235)
15 COG1131 CcmA ABC-type multidru 100.0 3.1E-50 6.8E-55 357.1 23.7 206 55-262 4-227 (293)
16 COG3842 PotA ABC-type spermidi 100.0 1.5E-50 3.3E-55 362.0 18.9 204 53-261 3-226 (352)
17 PRK13537 nodulation ABC transp 100.0 2E-49 4.3E-54 354.4 25.7 204 54-262 6-228 (306)
18 PRK11147 ABC transporter ATPas 100.0 6.3E-49 1.4E-53 382.3 30.1 208 52-261 316-528 (635)
19 COG3839 MalK ABC-type sugar tr 100.0 1.1E-49 2.4E-54 354.6 22.4 202 54-260 2-222 (338)
20 PRK13536 nodulation factor exp 100.0 4.7E-49 1E-53 356.2 25.7 205 53-262 39-262 (340)
21 TIGR02314 ABC_MetN D-methionin 100.0 6.8E-49 1.5E-53 354.9 25.3 202 55-260 1-229 (343)
22 cd03261 ABC_Org_Solvent_Resist 100.0 6.8E-49 1.5E-53 338.6 24.1 200 56-260 1-225 (235)
23 TIGR00960 3a0501s02 Type II (G 100.0 5.5E-49 1.2E-53 335.0 23.1 192 55-249 1-216 (216)
24 PRK15064 ABC transporter ATP-b 100.0 5.1E-48 1.1E-52 369.2 31.9 209 53-262 317-526 (530)
25 TIGR01288 nodI ATP-binding ABC 100.0 9.5E-49 2.1E-53 349.9 25.0 204 53-261 2-224 (303)
26 COG1118 CysA ABC-type sulfate/ 100.0 1.9E-49 4.1E-54 342.5 19.7 202 55-261 2-227 (345)
27 COG2884 FtsE Predicted ATPase 100.0 3.4E-49 7.3E-54 319.9 19.5 195 55-252 1-218 (223)
28 cd03226 ABC_cobalt_CbiO_domain 100.0 9.4E-49 2E-53 331.1 22.3 192 57-250 1-205 (205)
29 PRK11650 ugpC glycerol-3-phosp 100.0 2.2E-48 4.7E-53 353.9 25.5 202 55-260 3-223 (356)
30 PRK11247 ssuB aliphatic sulfon 100.0 3.2E-48 7E-53 338.6 25.6 199 52-255 9-217 (257)
31 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-48 2.8E-53 332.1 21.7 191 56-250 1-210 (213)
32 cd03265 ABC_DrrA DrrA is the A 100.0 2E-48 4.4E-53 332.5 22.9 198 56-258 1-218 (220)
33 COG0488 Uup ATPase components 100.0 9E-49 1.9E-53 369.5 22.7 206 54-264 2-243 (530)
34 COG4555 NatA ABC-type Na+ tran 100.0 1.9E-49 4.1E-54 324.1 15.4 206 55-264 1-225 (245)
35 cd03296 ABC_CysA_sulfate_impor 100.0 3.5E-48 7.5E-53 335.1 24.1 201 55-260 2-225 (239)
36 TIGR03522 GldA_ABC_ATP gliding 100.0 4.6E-48 9.9E-53 345.1 25.6 203 55-262 2-222 (301)
37 PRK11432 fbpC ferric transport 100.0 4E-48 8.7E-53 351.3 25.6 203 53-260 4-225 (351)
38 TIGR03265 PhnT2 putative 2-ami 100.0 4.8E-48 1E-52 351.2 25.6 203 54-261 3-224 (353)
39 TIGR02315 ABC_phnC phosphonate 100.0 3.9E-48 8.4E-53 335.3 23.3 202 55-260 1-234 (243)
40 cd03256 ABC_PhnC_transporter A 100.0 5.6E-48 1.2E-52 333.8 23.9 202 56-261 1-234 (241)
41 PRK13643 cbiO cobalt transport 100.0 6.5E-48 1.4E-52 342.1 24.4 205 55-261 1-233 (288)
42 PRK11153 metN DL-methionine tr 100.0 7.6E-48 1.7E-52 349.2 25.1 202 55-260 1-229 (343)
43 PRK13634 cbiO cobalt transport 100.0 6.5E-48 1.4E-52 342.4 23.9 203 56-260 3-234 (290)
44 PRK13647 cbiO cobalt transport 100.0 6.1E-48 1.3E-52 340.1 23.5 203 54-259 3-225 (274)
45 cd03268 ABC_BcrA_bacitracin_re 100.0 6.4E-48 1.4E-52 326.7 22.6 191 56-250 1-205 (208)
46 cd03219 ABC_Mj1267_LivG_branch 100.0 6.3E-48 1.4E-52 332.6 22.9 200 56-260 1-231 (236)
47 PRK09536 btuD corrinoid ABC tr 100.0 5.4E-48 1.2E-52 355.1 23.8 201 54-259 2-226 (402)
48 PRK15079 oligopeptide ABC tran 100.0 9.6E-48 2.1E-52 346.6 24.9 208 52-260 5-250 (331)
49 PRK09452 potA putrescine/sperm 100.0 1.3E-47 2.8E-52 350.4 25.9 204 52-260 11-233 (375)
50 COG2274 SunT ABC-type bacterio 100.0 9E-48 1.9E-52 373.3 26.3 252 4-262 422-697 (709)
51 PRK13637 cbiO cobalt transport 100.0 1.2E-47 2.5E-52 340.4 24.7 204 55-260 2-233 (287)
52 PRK13651 cobalt transporter AT 100.0 1.1E-47 2.5E-52 342.8 24.8 204 55-260 2-253 (305)
53 PRK11701 phnK phosphonate C-P 100.0 1.5E-47 3.2E-52 334.8 24.9 205 54-260 5-240 (258)
54 PRK13631 cbiO cobalt transport 100.0 1.7E-47 3.6E-52 343.7 25.8 209 50-260 16-264 (320)
55 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.1E-48 2E-52 328.5 22.8 196 56-255 1-217 (220)
56 PRK11308 dppF dipeptide transp 100.0 9.9E-48 2.1E-52 346.1 24.2 207 53-260 3-243 (327)
57 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.7E-48 1.4E-52 328.7 21.9 190 56-249 1-218 (218)
58 TIGR02673 FtsE cell division A 100.0 1E-47 2.3E-52 326.6 22.8 191 55-248 1-214 (214)
59 cd03263 ABC_subfamily_A The AB 100.0 1.1E-47 2.4E-52 327.8 23.0 200 56-259 1-219 (220)
60 PRK11000 maltose/maltodextrin 100.0 1.9E-47 4.1E-52 349.5 25.7 201 55-260 3-222 (369)
61 TIGR02769 nickel_nikE nickel i 100.0 1.6E-47 3.4E-52 335.9 24.3 205 55-260 2-239 (265)
62 cd03258 ABC_MetN_methionine_tr 100.0 2E-47 4.3E-52 329.0 24.4 202 55-260 1-229 (233)
63 PRK13641 cbiO cobalt transport 100.0 1.8E-47 4E-52 339.1 24.8 204 55-260 2-233 (287)
64 TIGR03258 PhnT 2-aminoethylpho 100.0 1.9E-47 4.2E-52 348.0 25.3 202 55-261 5-228 (362)
65 PRK11831 putative ABC transpor 100.0 1.6E-47 3.5E-52 336.6 24.0 202 54-260 6-232 (269)
66 PRK09544 znuC high-affinity zi 100.0 2E-47 4.4E-52 332.6 24.2 201 54-259 3-207 (251)
67 PRK14250 phosphate ABC transpo 100.0 1.6E-47 3.4E-52 331.5 23.4 202 54-260 2-220 (241)
68 PRK15112 antimicrobial peptide 100.0 1.4E-47 3.1E-52 336.5 23.4 206 54-260 3-238 (267)
69 cd03260 ABC_PstB_phosphate_tra 100.0 1.3E-47 2.8E-52 329.0 22.5 197 56-258 1-226 (227)
70 cd03235 ABC_Metallic_Cations A 100.0 4.9E-48 1.1E-52 328.5 19.7 191 57-249 1-210 (213)
71 cd03301 ABC_MalK_N The N-termi 100.0 2.4E-47 5.1E-52 324.2 23.7 192 56-251 1-211 (213)
72 cd03266 ABC_NatA_sodium_export 100.0 2E-47 4.4E-52 325.7 23.3 193 55-250 1-215 (218)
73 PRK10851 sulfate/thiosulfate t 100.0 2.1E-47 4.6E-52 347.0 24.9 201 55-260 2-225 (353)
74 PRK10619 histidine/lysine/argi 100.0 2.7E-47 5.9E-52 332.9 24.3 203 54-260 4-240 (257)
75 PRK11819 putative ABC transpor 100.0 1.5E-46 3.3E-51 360.8 31.7 210 52-263 321-535 (556)
76 PRK13646 cbiO cobalt transport 100.0 2.4E-47 5.2E-52 338.2 24.2 204 55-260 2-234 (286)
77 cd03257 ABC_NikE_OppD_transpor 100.0 4.3E-47 9.4E-52 325.5 24.7 196 55-250 1-225 (228)
78 PRK10908 cell division protein 100.0 3.9E-47 8.4E-52 325.0 24.2 193 55-250 1-216 (222)
79 PRK10636 putative ABC transpor 100.0 3.2E-47 6.9E-52 370.0 26.7 203 55-261 1-236 (638)
80 TIGR02323 CP_lyasePhnK phospho 100.0 3.6E-47 7.9E-52 331.3 24.2 205 54-260 2-237 (253)
81 cd03218 ABC_YhbG The ABC trans 100.0 3E-47 6.5E-52 327.6 23.3 200 56-260 1-221 (232)
82 PRK13638 cbiO cobalt transport 100.0 2.9E-47 6.3E-52 335.2 23.6 202 55-260 1-224 (271)
83 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.6E-47 9.9E-52 327.5 24.3 201 55-261 1-221 (236)
84 PRK13636 cbiO cobalt transport 100.0 4.8E-47 1E-51 335.8 25.0 205 54-261 4-231 (283)
85 cd03269 ABC_putative_ATPase Th 100.0 3.2E-47 6.8E-52 322.8 22.8 191 56-250 1-207 (210)
86 TIGR03411 urea_trans_UrtD urea 100.0 5.3E-47 1.2E-51 328.1 24.5 202 54-260 1-230 (242)
87 PRK09493 glnQ glutamine ABC tr 100.0 3.6E-47 7.8E-52 328.9 23.3 201 55-260 1-224 (240)
88 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.5E-47 9.7E-52 328.7 23.8 202 56-260 1-224 (242)
89 PRK11264 putative amino-acid A 100.0 4.2E-47 9.2E-52 330.2 23.7 201 55-260 3-232 (250)
90 TIGR01188 drrA daunorubicin re 100.0 2.9E-47 6.3E-52 340.1 23.1 195 63-262 1-214 (302)
91 cd03224 ABC_TM1139_LivF_branch 100.0 2.4E-47 5.2E-52 326.0 21.6 200 56-260 1-220 (222)
92 cd03264 ABC_drug_resistance_li 100.0 2.9E-47 6.3E-52 323.3 21.8 190 56-250 1-208 (211)
93 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.9E-46 6.2E-51 358.6 31.2 210 52-263 319-533 (552)
94 PRK15093 antimicrobial peptide 100.0 4.5E-47 9.7E-52 342.6 24.1 206 54-260 2-247 (330)
95 PRK11607 potG putrescine trans 100.0 9.5E-47 2.1E-51 345.1 26.3 204 53-261 17-239 (377)
96 cd03292 ABC_FtsE_transporter F 100.0 5.1E-47 1.1E-51 322.2 22.8 191 56-249 1-214 (214)
97 PRK11819 putative ABC transpor 100.0 6.8E-47 1.5E-51 363.2 26.5 205 53-261 4-250 (556)
98 PRK15064 ABC transporter ATP-b 100.0 5.4E-47 1.2E-51 362.2 25.5 204 55-261 1-242 (530)
99 PRK11248 tauB taurine transpor 100.0 8.1E-47 1.7E-51 329.7 24.5 192 55-250 1-210 (255)
100 PRK11300 livG leucine/isoleuci 100.0 9.3E-47 2E-51 329.0 24.7 202 54-260 4-242 (255)
101 PRK13652 cbiO cobalt transport 100.0 8.8E-47 1.9E-51 333.2 24.8 204 54-260 2-226 (277)
102 PRK10575 iron-hydroxamate tran 100.0 8.1E-47 1.8E-51 331.4 24.3 204 52-260 8-236 (265)
103 PRK11629 lolD lipoprotein tran 100.0 1.1E-46 2.3E-51 324.6 24.6 193 54-250 4-224 (233)
104 PRK11022 dppD dipeptide transp 100.0 6.9E-47 1.5E-51 340.6 24.3 205 55-260 3-242 (326)
105 TIGR02211 LolD_lipo_ex lipopro 100.0 8.1E-47 1.8E-51 322.6 23.5 192 55-250 1-220 (221)
106 PRK13649 cbiO cobalt transport 100.0 8.2E-47 1.8E-51 333.8 24.0 204 55-260 2-233 (280)
107 PRK13548 hmuV hemin importer A 100.0 9.1E-47 2E-51 329.9 23.8 201 55-260 2-229 (258)
108 TIGR03410 urea_trans_UrtE urea 100.0 4.9E-47 1.1E-51 326.0 21.8 201 56-260 1-220 (230)
109 PRK11124 artP arginine transpo 100.0 1.1E-46 2.4E-51 326.1 24.1 201 55-260 2-229 (242)
110 PRK11231 fecE iron-dicitrate t 100.0 8E-47 1.7E-51 329.6 23.2 200 55-259 2-225 (255)
111 PRK10584 putative ABC transpor 100.0 1.2E-46 2.6E-51 323.1 23.8 194 53-250 4-225 (228)
112 TIGR01978 sufC FeS assembly AT 100.0 8E-47 1.7E-51 327.0 22.8 202 56-261 1-234 (243)
113 PRK10895 lipopolysaccharide AB 100.0 6.2E-47 1.3E-51 327.6 21.9 201 55-260 3-225 (241)
114 COG0411 LivG ABC-type branched 100.0 9.3E-48 2E-52 323.5 16.1 203 54-261 3-239 (250)
115 TIGR00972 3a0107s01c2 phosphat 100.0 1.5E-46 3.2E-51 326.4 23.9 201 55-260 1-231 (247)
116 TIGR03740 galliderm_ABC gallid 100.0 1.2E-46 2.6E-51 322.2 22.9 198 56-258 1-210 (223)
117 cd03225 ABC_cobalt_CbiO_domain 100.0 7.4E-47 1.6E-51 320.7 21.2 190 57-248 1-211 (211)
118 COG1137 YhbG ABC-type (unclass 100.0 1.9E-48 4.1E-53 317.9 10.9 205 54-261 3-228 (243)
119 PRK13645 cbiO cobalt transport 100.0 2.3E-46 5.1E-51 332.4 24.9 204 54-259 5-238 (289)
120 PRK13639 cbiO cobalt transport 100.0 2.7E-46 5.9E-51 329.7 25.2 203 55-260 1-225 (275)
121 PRK10070 glycine betaine trans 100.0 3E-46 6.6E-51 343.3 26.3 200 56-260 29-253 (400)
122 PRK09473 oppD oligopeptide tra 100.0 2.5E-46 5.4E-51 337.4 25.3 208 52-260 9-250 (330)
123 PRK10253 iron-enterobactin tra 100.0 1.3E-46 2.9E-51 330.1 22.8 203 53-260 5-232 (265)
124 PRK14242 phosphate transporter 100.0 3E-46 6.6E-51 325.5 24.7 203 53-260 4-236 (253)
125 PRK13644 cbiO cobalt transport 100.0 2.4E-46 5.2E-51 329.9 24.2 202 55-260 1-223 (274)
126 PRK13650 cbiO cobalt transport 100.0 2.9E-46 6.2E-51 330.2 24.7 203 54-260 3-228 (279)
127 PRK09984 phosphonate/organopho 100.0 2.4E-46 5.3E-51 327.8 23.7 201 54-259 3-240 (262)
128 cd03262 ABC_HisP_GlnQ_permease 100.0 1E-46 2.2E-51 320.2 20.7 190 56-249 1-213 (213)
129 PRK10418 nikD nickel transport 100.0 6.5E-46 1.4E-50 323.7 26.1 204 54-260 3-229 (254)
130 TIGR03005 ectoine_ehuA ectoine 100.0 2.2E-46 4.8E-51 326.2 23.1 200 56-260 1-235 (252)
131 PRK14247 phosphate ABC transpo 100.0 3.3E-46 7.2E-51 324.7 23.7 203 54-260 2-233 (250)
132 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.7E-46 3.7E-51 330.1 22.0 199 57-260 26-249 (269)
133 PRK15056 manganese/iron transp 100.0 3.6E-46 7.8E-51 328.5 24.0 202 55-259 6-228 (272)
134 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 8.8E-46 1.9E-50 363.5 29.3 201 55-261 451-673 (686)
135 PRK10771 thiQ thiamine transpo 100.0 5E-46 1.1E-50 320.2 24.1 200 55-261 1-219 (232)
136 TIGR03873 F420-0_ABC_ATP propo 100.0 3.4E-46 7.4E-51 325.8 23.4 200 56-260 2-225 (256)
137 PRK15439 autoinducer 2 ABC tra 100.0 2.8E-46 6.1E-51 355.6 24.8 203 53-260 9-228 (510)
138 TIGR01186 proV glycine betaine 100.0 2.6E-46 5.5E-51 340.1 23.4 192 64-260 2-218 (363)
139 PRK11614 livF leucine/isoleuci 100.0 2.4E-46 5.2E-51 323.1 21.9 202 54-260 4-225 (237)
140 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.8E-46 1.7E-50 365.2 28.5 203 54-261 476-700 (710)
141 PRK11144 modC molybdate transp 100.0 4.4E-46 9.6E-51 338.8 24.7 199 55-261 1-218 (352)
142 COG4988 CydD ABC-type transpor 100.0 7.1E-46 1.5E-50 344.3 26.5 251 3-260 269-542 (559)
143 PRK10419 nikE nickel transport 100.0 4.6E-46 9.9E-51 327.1 23.9 205 54-259 2-239 (268)
144 PRK14248 phosphate ABC transpo 100.0 7.1E-46 1.5E-50 325.9 25.1 205 51-260 17-251 (268)
145 PRK11174 cysteine/glutathione 100.0 9.8E-46 2.1E-50 357.5 28.4 201 55-261 349-572 (588)
146 COG1117 PstB ABC-type phosphat 100.0 4.8E-47 1E-51 312.7 16.2 202 53-259 5-235 (253)
147 PRK14268 phosphate ABC transpo 100.0 9E-46 1.9E-50 323.6 25.3 203 53-260 10-241 (258)
148 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.5E-46 1.4E-50 356.2 26.5 205 54-262 3-249 (552)
149 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.8E-46 1.3E-50 315.3 23.2 189 56-250 1-208 (211)
150 PRK14273 phosphate ABC transpo 100.0 8E-46 1.7E-50 323.1 24.5 203 53-260 5-237 (254)
151 PRK13635 cbiO cobalt transport 100.0 5.5E-46 1.2E-50 328.4 23.4 203 54-260 4-228 (279)
152 PRK11147 ABC transporter ATPas 100.0 8.1E-46 1.8E-50 360.5 26.8 204 54-263 2-245 (635)
153 COG1123 ATPase components of v 100.0 3.4E-46 7.4E-51 347.3 22.5 206 52-258 277-516 (539)
154 PRK14267 phosphate ABC transpo 100.0 9.7E-46 2.1E-50 322.3 23.9 203 54-260 3-236 (253)
155 PRK13633 cobalt transporter AT 100.0 7.4E-46 1.6E-50 327.8 23.4 203 54-260 3-232 (280)
156 PRK10247 putative ABC transpor 100.0 4.5E-46 9.7E-51 319.2 21.0 197 53-256 5-222 (225)
157 PRK10744 pstB phosphate transp 100.0 1.9E-45 4E-50 321.9 25.1 203 53-260 11-243 (260)
158 PRK14235 phosphate transporter 100.0 1.9E-45 4.2E-50 323.0 25.3 204 52-260 16-250 (267)
159 COG4152 ABC-type uncharacteriz 100.0 1.1E-46 2.3E-51 316.0 16.3 204 55-263 2-221 (300)
160 PRK13632 cbiO cobalt transport 100.0 1.5E-45 3.2E-50 324.4 24.2 204 53-260 5-230 (271)
161 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-45 3E-50 316.6 23.4 201 56-261 3-226 (229)
162 PRK10261 glutathione transport 100.0 7.8E-46 1.7E-50 359.8 24.4 206 53-259 311-551 (623)
163 cd03252 ABCC_Hemolysin The ABC 100.0 2.1E-45 4.5E-50 317.2 24.1 200 56-261 1-225 (237)
164 PRK14269 phosphate ABC transpo 100.0 1.8E-45 3.9E-50 319.5 23.9 201 55-260 2-229 (246)
165 PRK14245 phosphate ABC transpo 100.0 2.3E-45 5E-50 319.5 24.0 202 54-260 2-233 (250)
166 cd03300 ABC_PotA_N PotA is an 100.0 3.3E-45 7.2E-50 315.2 24.7 200 56-260 1-219 (232)
167 PRK14254 phosphate ABC transpo 100.0 5.2E-45 1.1E-49 323.1 26.3 204 52-260 36-268 (285)
168 PRK13648 cbiO cobalt transport 100.0 2.9E-45 6.3E-50 322.2 24.5 204 53-260 5-230 (269)
169 PRK13543 cytochrome c biogenes 100.0 2.7E-45 6E-50 312.1 23.5 191 52-246 8-212 (214)
170 cd03245 ABCC_bacteriocin_expor 100.0 2.8E-45 6E-50 312.9 23.6 190 56-250 3-217 (220)
171 PRK14274 phosphate ABC transpo 100.0 3.9E-45 8.4E-50 319.7 25.0 203 53-260 10-242 (259)
172 PRK14241 phosphate transporter 100.0 4.4E-45 9.5E-50 319.2 25.0 202 55-260 4-241 (258)
173 PRK09700 D-allose transporter 100.0 1.2E-45 2.5E-50 351.5 23.1 201 54-259 4-232 (510)
174 PRK14259 phosphate ABC transpo 100.0 3.8E-45 8.3E-50 321.5 24.5 204 52-260 10-252 (269)
175 PRK14270 phosphate ABC transpo 100.0 5.3E-45 1.1E-49 317.4 25.0 203 53-260 2-234 (251)
176 COG0410 LivF ABC-type branched 100.0 1.5E-45 3.3E-50 307.9 20.4 204 54-261 2-226 (237)
177 COG3840 ThiQ ABC-type thiamine 100.0 7.7E-46 1.7E-50 298.6 17.9 200 55-261 1-219 (231)
178 PRK14251 phosphate ABC transpo 100.0 3.8E-45 8.3E-50 318.2 23.9 202 54-260 3-234 (251)
179 PRK14240 phosphate transporter 100.0 5.6E-45 1.2E-49 317.0 24.7 201 55-260 3-233 (250)
180 TIGR01277 thiQ thiamine ABC tr 100.0 5E-45 1.1E-49 310.2 23.9 193 56-255 1-212 (213)
181 PRK14262 phosphate ABC transpo 100.0 5.1E-45 1.1E-49 317.2 24.4 202 54-260 2-233 (250)
182 TIGR01193 bacteriocin_ABC ABC- 100.0 6.1E-45 1.3E-49 358.7 28.0 203 54-261 472-697 (708)
183 PRK13547 hmuV hemin importer A 100.0 5.7E-45 1.2E-49 320.6 24.9 200 55-259 1-242 (272)
184 TIGR03375 type_I_sec_LssB type 100.0 9.6E-45 2.1E-49 356.6 29.2 206 54-264 462-691 (694)
185 PRK09580 sufC cysteine desulfu 100.0 6.5E-45 1.4E-49 316.0 24.8 201 55-259 1-233 (248)
186 PRK15134 microcin C ABC transp 100.0 2.3E-45 5E-50 350.8 24.1 205 54-259 4-244 (529)
187 PRK14239 phosphate transporter 100.0 7.4E-45 1.6E-49 316.5 25.0 202 54-260 4-235 (252)
188 PRK14238 phosphate transporter 100.0 5.3E-45 1.2E-49 320.9 24.3 205 51-260 20-254 (271)
189 PRK10261 glutathione transport 100.0 2.4E-45 5.3E-50 356.3 24.2 208 52-260 9-257 (623)
190 PRK14237 phosphate transporter 100.0 8.2E-45 1.8E-49 319.0 25.2 203 53-260 18-250 (267)
191 PRK13640 cbiO cobalt transport 100.0 5.4E-45 1.2E-49 322.5 24.2 203 54-260 4-231 (282)
192 KOG0062 ATPase component of AB 100.0 9.1E-46 2E-50 337.1 19.7 264 1-264 308-572 (582)
193 cd03297 ABC_ModC_molybdenum_tr 100.0 2.8E-45 6.1E-50 311.8 21.6 187 56-250 2-211 (214)
194 PRK14256 phosphate ABC transpo 100.0 9.4E-45 2E-49 316.0 25.3 202 55-260 4-235 (252)
195 PRK10762 D-ribose transporter 100.0 9.3E-46 2E-50 351.4 20.6 201 54-259 3-228 (501)
196 PRK14272 phosphate ABC transpo 100.0 5.9E-45 1.3E-49 317.1 23.7 202 55-260 4-235 (252)
197 COG0444 DppD ABC-type dipeptid 100.0 2.7E-45 5.8E-50 320.5 21.5 204 55-259 1-241 (316)
198 PRK11176 lipid transporter ATP 100.0 9.3E-45 2E-49 350.3 27.5 202 55-261 341-567 (582)
199 PRK14275 phosphate ABC transpo 100.0 8.9E-45 1.9E-49 321.7 25.1 204 52-260 36-269 (286)
200 TIGR03269 met_CoM_red_A2 methy 100.0 3.6E-45 7.8E-50 348.9 24.1 208 52-262 276-518 (520)
201 PRK10790 putative multidrug tr 100.0 1.7E-44 3.7E-49 349.1 28.8 201 54-260 339-562 (592)
202 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7E-45 1.5E-49 314.1 23.4 200 56-261 1-226 (238)
203 CHL00131 ycf16 sulfate ABC tra 100.0 1E-44 2.2E-49 315.6 24.3 201 53-257 5-237 (252)
204 PRK13549 xylose transporter AT 100.0 2.8E-45 6.2E-50 348.5 22.7 201 54-259 4-230 (506)
205 cd03251 ABCC_MsbA MsbA is an e 100.0 8E-45 1.7E-49 312.9 23.4 200 56-261 1-225 (234)
206 TIGR02142 modC_ABC molybdenum 100.0 3.3E-45 7.3E-50 333.3 21.9 194 60-260 4-220 (354)
207 PRK13642 cbiO cobalt transport 100.0 1.3E-44 2.9E-49 319.3 24.9 203 54-260 3-228 (277)
208 cd03253 ABCC_ATM1_transporter 100.0 1.1E-44 2.5E-49 312.3 23.9 200 56-260 1-223 (236)
209 PRK14265 phosphate ABC transpo 100.0 1.4E-44 3E-49 318.7 24.9 205 51-260 16-257 (274)
210 cd03299 ABC_ModC_like Archeal 100.0 1.3E-44 2.8E-49 312.1 24.1 199 56-260 1-218 (235)
211 cd03214 ABC_Iron-Siderophores_ 100.0 2.4E-45 5.2E-50 304.5 18.6 173 57-250 1-177 (180)
212 PRK14246 phosphate ABC transpo 100.0 1.1E-44 2.3E-49 316.6 23.7 204 53-260 8-240 (257)
213 PRK13538 cytochrome c biogenes 100.0 5.3E-45 1.2E-49 308.1 21.0 186 55-244 1-202 (204)
214 PRK15134 microcin C ABC transp 100.0 3.8E-45 8.2E-50 349.4 22.6 207 52-260 272-514 (529)
215 TIGR02324 CP_lyasePhnL phospho 100.0 7.8E-45 1.7E-49 311.1 22.1 189 55-245 1-223 (224)
216 PRK14271 phosphate ABC transpo 100.0 1.6E-44 3.4E-49 318.6 24.7 204 52-260 18-250 (276)
217 cd03223 ABCD_peroxisomal_ALDP 100.0 8.5E-45 1.8E-49 297.5 21.4 164 56-248 1-164 (166)
218 PRK10938 putative molybdenum t 100.0 3.8E-45 8.3E-50 346.4 22.2 200 55-259 3-222 (490)
219 TIGR00958 3a01208 Conjugate Tr 100.0 2.9E-44 6.3E-49 353.7 29.3 203 54-261 477-702 (711)
220 TIGR00968 3a0106s01 sulfate AB 100.0 1.5E-44 3.2E-49 312.1 23.9 200 56-260 1-219 (237)
221 PRK14253 phosphate ABC transpo 100.0 1.9E-44 4.1E-49 313.5 24.7 201 55-260 3-232 (249)
222 COG4987 CydC ABC-type transpor 100.0 2.6E-45 5.7E-50 336.3 20.2 202 55-261 336-561 (573)
223 PRK14236 phosphate transporter 100.0 2.2E-44 4.8E-49 317.1 25.4 204 52-260 22-255 (272)
224 PRK13549 xylose transporter AT 100.0 2.5E-45 5.5E-50 348.9 20.6 206 53-259 257-492 (506)
225 cd03267 ABC_NatA_like Similar 100.0 9.4E-45 2E-49 313.2 22.3 185 63-250 29-233 (236)
226 PRK14255 phosphate ABC transpo 100.0 2.8E-44 6.2E-49 312.9 25.3 202 53-259 3-234 (252)
227 TIGR03415 ABC_choXWV_ATP choli 100.0 6.4E-45 1.4E-49 332.5 22.1 197 59-260 28-253 (382)
228 PRK14249 phosphate ABC transpo 100.0 2.8E-44 6E-49 312.8 25.1 202 54-260 3-234 (251)
229 PRK11160 cysteine/glutathione 100.0 4.5E-44 9.8E-49 344.9 29.0 203 54-261 337-562 (574)
230 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-44 3.1E-49 304.9 22.2 185 56-244 1-198 (201)
231 PRK14244 phosphate ABC transpo 100.0 1.9E-44 4.2E-49 313.8 23.6 200 56-260 6-236 (251)
232 PRK14243 phosphate transporter 100.0 2.2E-44 4.8E-49 315.8 23.8 203 53-260 8-247 (264)
233 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-44 3.5E-49 344.4 24.3 203 56-262 1-259 (520)
234 PRK14258 phosphate ABC transpo 100.0 4E-44 8.7E-49 313.7 24.8 202 54-260 6-244 (261)
235 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-44 2.4E-49 344.0 23.1 200 55-258 1-227 (500)
236 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-44 2.5E-49 306.1 20.6 182 58-244 1-206 (206)
237 TIGR02982 heterocyst_DevA ABC 100.0 2.9E-44 6.2E-49 306.9 23.0 191 55-249 1-219 (220)
238 cd03244 ABCC_MRP_domain2 Domai 100.0 3E-44 6.4E-49 306.8 23.1 194 56-255 3-220 (221)
239 PRK13657 cyclic beta-1,2-gluca 100.0 7.8E-44 1.7E-48 344.3 28.6 202 54-260 333-557 (588)
240 TIGR02770 nickel_nikD nickel i 100.0 2.4E-44 5.2E-49 309.5 21.9 189 71-260 1-214 (230)
241 PRK14261 phosphate ABC transpo 100.0 8.1E-44 1.8E-48 310.3 25.4 203 53-260 4-236 (253)
242 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.6E-44 5.7E-49 288.0 20.5 144 56-248 1-144 (144)
243 PRK11288 araG L-arabinose tran 100.0 2.3E-44 4.9E-49 341.9 23.6 193 54-250 3-219 (501)
244 TIGR02203 MsbA_lipidA lipid A 100.0 7.4E-44 1.6E-48 343.2 27.2 201 55-260 330-555 (571)
245 PRK14260 phosphate ABC transpo 100.0 6.3E-44 1.4E-48 312.1 24.2 202 54-260 6-242 (259)
246 PRK13539 cytochrome c biogenes 100.0 2.8E-44 6.1E-49 304.4 20.9 186 55-246 2-200 (207)
247 COG1132 MdlB ABC-type multidru 100.0 1.1E-43 2.3E-48 342.0 27.2 202 55-261 328-552 (567)
248 PRK09700 D-allose transporter 100.0 1.8E-44 3.9E-49 343.3 21.5 196 53-251 263-489 (510)
249 PRK14252 phosphate ABC transpo 100.0 1.6E-43 3.5E-48 310.4 25.8 205 51-260 12-248 (265)
250 cd03215 ABC_Carb_Monos_II This 100.0 3.9E-44 8.4E-49 297.7 20.5 165 53-249 2-182 (182)
251 cd03216 ABC_Carb_Monos_I This 100.0 5.1E-44 1.1E-48 292.0 20.8 158 56-250 1-161 (163)
252 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.6E-43 3.4E-48 299.6 24.5 188 54-255 5-206 (207)
253 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.3E-44 1.4E-48 305.8 22.3 190 56-250 23-221 (224)
254 cd03248 ABCC_TAP TAP, the Tran 100.0 6.7E-44 1.4E-48 305.7 22.5 192 53-249 9-226 (226)
255 PRK14257 phosphate ABC transpo 100.0 2E-43 4.3E-48 318.3 26.6 205 52-260 77-312 (329)
256 cd03289 ABCC_CFTR2 The CFTR su 100.0 9.6E-44 2.1E-48 312.9 24.0 198 56-261 3-225 (275)
257 COG1123 ATPase components of v 100.0 5.3E-44 1.1E-48 332.7 23.3 207 54-261 4-244 (539)
258 TIGR01846 type_I_sec_HlyB type 100.0 1.7E-43 3.6E-48 347.8 28.0 203 54-261 454-680 (694)
259 TIGR01192 chvA glucan exporter 100.0 3.2E-43 7E-48 339.6 29.5 203 54-261 333-558 (585)
260 cd03250 ABCC_MRP_domain1 Domai 100.0 9.8E-44 2.1E-48 300.2 22.7 186 56-248 1-204 (204)
261 TIGR01842 type_I_sec_PrtD type 100.0 3.2E-43 6.8E-48 337.2 29.1 203 54-261 315-542 (544)
262 TIGR02633 xylG D-xylose ABC tr 100.0 2E-44 4.3E-49 342.3 20.5 206 53-259 255-490 (500)
263 cd03230 ABC_DR_subfamily_A Thi 100.0 9.5E-44 2.1E-48 293.1 21.4 160 56-249 1-173 (173)
264 PRK14264 phosphate ABC transpo 100.0 1.9E-43 4E-48 315.9 24.8 204 52-260 42-288 (305)
265 COG4559 ABC-type hemin transpo 100.0 2.4E-44 5.3E-49 296.3 17.4 202 55-259 1-228 (259)
266 cd03234 ABCG_White The White s 100.0 9.7E-44 2.1E-48 304.9 21.7 193 55-250 3-223 (226)
267 TIGR01184 ntrCD nitrate transp 100.0 4.2E-44 9.2E-49 308.0 19.2 181 72-256 1-199 (230)
268 PRK10982 galactose/methyl gala 100.0 3E-44 6.4E-49 340.4 20.0 197 58-259 1-221 (491)
269 PRK14263 phosphate ABC transpo 100.0 4.2E-43 9.1E-48 307.2 25.5 203 53-260 6-244 (261)
270 COG4181 Predicted ABC-type tra 100.0 5.1E-44 1.1E-48 285.5 17.7 192 55-250 6-225 (228)
271 cd03247 ABCC_cytochrome_bd The 100.0 1.9E-43 4E-48 292.6 21.8 162 56-250 1-175 (178)
272 KOG0057 Mitochondrial Fe/S clu 100.0 7.9E-44 1.7E-48 327.0 20.8 201 55-261 351-574 (591)
273 KOG0927 Predicted transporter 100.0 2.2E-44 4.9E-49 329.7 17.1 260 4-264 335-599 (614)
274 cd03246 ABCC_Protease_Secretio 100.0 1.5E-43 3.2E-48 291.9 20.4 158 56-249 1-173 (173)
275 PRK14266 phosphate ABC transpo 100.0 2.3E-43 5.1E-48 306.8 22.5 201 55-260 3-233 (250)
276 PRK13545 tagH teichoic acids e 100.0 3.3E-43 7.1E-48 328.5 24.9 202 53-260 19-231 (549)
277 cd03229 ABC_Class3 This class 100.0 2E-43 4.4E-48 292.4 20.9 161 56-248 1-178 (178)
278 TIGR02204 MsbA_rel ABC transpo 100.0 8.9E-43 1.9E-47 336.1 28.6 202 54-260 336-562 (576)
279 COG4175 ProV ABC-type proline/ 100.0 6.8E-44 1.5E-48 308.8 18.4 186 71-260 43-253 (386)
280 TIGR01189 ccmA heme ABC export 100.0 1.3E-43 2.9E-48 298.2 19.7 182 56-243 1-197 (198)
281 KOG0058 Peptide exporter, ABC 100.0 8.7E-44 1.9E-48 336.3 20.5 204 53-261 463-691 (716)
282 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.1E-43 6.6E-48 305.4 22.1 193 63-259 1-205 (246)
283 PRK11288 araG L-arabinose tran 100.0 8.5E-44 1.8E-48 338.0 20.3 202 53-260 255-484 (501)
284 PRK13546 teichoic acids export 100.0 9.7E-43 2.1E-47 305.2 25.2 188 69-262 37-233 (264)
285 PRK10789 putative multidrug tr 100.0 1.7E-42 3.6E-47 333.8 28.7 202 54-260 312-537 (569)
286 PRK10938 putative molybdenum t 100.0 1.1E-43 2.4E-48 336.4 20.1 200 52-252 257-484 (490)
287 cd03290 ABCC_SUR1_N The SUR do 100.0 6.3E-43 1.4E-47 298.2 22.4 187 57-248 2-218 (218)
288 COG4598 HisP ABC-type histidin 100.0 3.1E-44 6.8E-49 288.9 13.4 202 54-260 5-240 (256)
289 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-43 3.4E-48 336.8 20.5 201 52-259 265-490 (510)
290 TIGR02868 CydC thiol reductant 100.0 8.5E-43 1.8E-47 333.2 25.5 174 55-231 334-529 (529)
291 cd03288 ABCC_SUR2 The SUR doma 100.0 1.2E-42 2.5E-47 303.8 23.9 202 53-261 17-243 (257)
292 PRK10762 D-ribose transporter 100.0 3E-43 6.5E-48 334.3 21.8 200 53-259 255-482 (501)
293 PRK13540 cytochrome c biogenes 100.0 4E-43 8.7E-48 295.7 20.0 183 55-242 1-197 (200)
294 cd03213 ABCG_EPDR ABCG transpo 100.0 9.9E-43 2.2E-47 292.1 22.2 170 55-250 3-191 (194)
295 COG4608 AppF ABC-type oligopep 100.0 1.7E-43 3.6E-48 303.2 17.7 183 54-259 3-197 (268)
296 PRK10982 galactose/methyl gala 100.0 3.9E-43 8.3E-48 332.8 22.1 205 52-260 247-479 (491)
297 PRK10522 multidrug transporter 100.0 1.9E-42 4.2E-47 332.0 27.0 195 55-257 322-535 (547)
298 COG4604 CeuD ABC-type enteroch 100.0 6.5E-45 1.4E-49 296.6 8.4 202 55-261 1-225 (252)
299 cd03217 ABC_FeS_Assembly ABC-t 100.0 6.7E-43 1.4E-47 294.5 20.8 172 56-257 1-190 (200)
300 PRK03695 vitamin B12-transport 100.0 7.9E-43 1.7E-47 303.3 21.6 193 57-259 2-220 (248)
301 cd03232 ABC_PDR_domain2 The pl 100.0 1.3E-42 2.9E-47 290.9 21.8 170 55-250 3-189 (192)
302 cd03228 ABCC_MRP_Like The MRP 100.0 1.2E-42 2.5E-47 286.0 20.7 157 56-248 1-171 (171)
303 KOG0055 Multidrug/pheromone ex 100.0 7.6E-43 1.6E-47 346.0 21.5 204 53-261 348-576 (1228)
304 cd03233 ABC_PDR_domain1 The pl 100.0 2.9E-42 6.3E-47 291.0 22.0 176 55-250 3-199 (202)
305 cd03291 ABCC_CFTR1 The CFTR su 100.0 9E-42 2E-46 301.4 26.0 198 53-261 37-247 (282)
306 TIGR02857 CydD thiol reductant 100.0 7.2E-42 1.6E-46 326.8 26.8 186 55-244 320-529 (529)
307 TIGR03771 anch_rpt_ABC anchore 100.0 2.8E-42 6.1E-47 295.3 20.5 181 77-260 1-200 (223)
308 COG1129 MglA ABC-type sugar tr 100.0 4.5E-42 9.8E-47 317.8 23.3 194 53-250 6-224 (500)
309 PRK13409 putative ATPase RIL; 100.0 2.8E-42 6.1E-47 331.8 22.5 191 52-250 337-532 (590)
310 PLN03232 ABC transporter C fam 100.0 1.1E-41 2.3E-46 356.3 28.1 202 54-261 1233-1458(1495)
311 TIGR01257 rim_protein retinal- 100.0 8.1E-42 1.8E-46 357.6 26.9 207 53-263 926-1151(2272)
312 PTZ00265 multidrug resistance 100.0 1.1E-41 2.4E-46 354.2 27.7 203 55-261 1165-1452(1466)
313 TIGR01257 rim_protein retinal- 100.0 8E-42 1.7E-46 357.7 26.2 207 53-263 1935-2161(2272)
314 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.4E-41 3.1E-46 326.3 25.6 190 54-250 336-549 (555)
315 PLN03130 ABC transporter C fam 100.0 2.2E-41 4.8E-46 354.7 28.6 202 54-261 1236-1461(1622)
316 COG4525 TauB ABC-type taurine 100.0 3.7E-42 8.1E-47 280.1 17.6 194 54-250 2-214 (259)
317 COG1119 ModF ABC-type molybden 100.0 1.2E-42 2.5E-47 292.8 15.0 200 52-254 28-255 (257)
318 TIGR01166 cbiO cobalt transpor 100.0 3.2E-42 6.9E-47 287.9 17.1 165 67-233 3-189 (190)
319 TIGR00954 3a01203 Peroxysomal 100.0 2.5E-41 5.5E-46 329.8 26.0 188 54-246 450-653 (659)
320 PRK13541 cytochrome c biogenes 100.0 8.7E-42 1.9E-46 286.5 19.2 181 55-241 1-192 (195)
321 PLN03073 ABC transporter F fam 100.0 1.8E-41 3.8E-46 332.0 24.3 208 53-261 175-431 (718)
322 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-41 2.6E-46 280.9 19.5 155 59-261 4-163 (177)
323 COG3845 ABC-type uncharacteriz 100.0 2.5E-41 5.5E-46 307.8 22.2 193 54-250 3-219 (501)
324 COG4619 ABC-type uncharacteriz 100.0 9.5E-43 2.1E-47 277.4 11.1 193 56-249 4-212 (223)
325 TIGR00957 MRP_assoc_pro multi 100.0 6.9E-41 1.5E-45 350.6 28.3 202 54-261 1283-1508(1522)
326 COG4172 ABC-type uncharacteriz 100.0 2.4E-41 5.1E-46 301.0 21.0 207 51-259 272-514 (534)
327 PRK15177 Vi polysaccharide exp 100.0 3.8E-41 8.1E-46 286.5 20.6 186 71-262 2-193 (213)
328 COG4618 ArpD ABC-type protease 100.0 8.3E-41 1.8E-45 304.6 23.0 206 54-264 333-563 (580)
329 PTZ00243 ABC transporter; Prov 100.0 4.5E-40 9.8E-45 344.3 29.5 201 55-261 1308-1533(1560)
330 PLN03211 ABC transporter G-25; 100.0 1.3E-40 2.9E-45 323.9 22.9 205 57-265 70-300 (659)
331 COG4161 ArtP ABC-type arginine 100.0 6.7E-41 1.5E-45 265.6 14.7 200 55-259 2-228 (242)
332 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.4E-40 3E-45 290.1 17.6 185 59-249 4-216 (255)
333 COG4148 ModC ABC-type molybdat 100.0 8.5E-41 1.8E-45 285.3 15.2 184 73-260 15-217 (352)
334 COG4586 ABC-type uncharacteriz 100.0 6.8E-41 1.5E-45 285.1 14.4 193 70-264 38-249 (325)
335 cd03238 ABC_UvrA The excision 100.0 2.3E-40 5E-45 273.0 17.1 148 69-249 8-166 (176)
336 PTZ00265 multidrug resistance 100.0 1E-39 2.2E-44 339.5 25.4 189 55-247 382-655 (1466)
337 KOG0055 Multidrug/pheromone ex 100.0 3.9E-40 8.5E-45 326.8 20.3 202 55-261 987-1213(1228)
338 PRK10535 macrolide transporter 100.0 2.5E-39 5.3E-44 315.5 24.9 201 54-259 3-230 (648)
339 TIGR01271 CFTR_protein cystic 100.0 5.7E-39 1.2E-43 335.5 28.9 201 54-261 1216-1440(1490)
340 COG4107 PhnK ABC-type phosphon 100.0 1.3E-39 2.8E-44 261.1 18.5 198 53-251 4-232 (258)
341 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.9E-39 4.2E-44 263.1 18.6 153 58-248 2-157 (157)
342 TIGR01187 potA spermidine/putr 100.0 2.1E-39 4.6E-44 292.0 20.5 171 87-261 1-190 (325)
343 KOG0066 eIF2-interacting prote 100.0 8.5E-40 1.8E-44 293.5 16.0 219 43-263 575-793 (807)
344 COG4674 Uncharacterized ABC-ty 100.0 1.2E-39 2.6E-44 265.4 15.3 202 54-260 4-234 (249)
345 PLN03232 ABC transporter C fam 100.0 1.9E-38 4.2E-43 331.8 27.2 201 54-261 613-828 (1495)
346 TIGR00957 MRP_assoc_pro multi 100.0 4.1E-38 8.9E-43 329.8 28.8 198 55-260 636-849 (1522)
347 PLN03130 ABC transporter C fam 100.0 3.9E-38 8.5E-43 330.3 28.0 200 54-261 613-828 (1622)
348 KOG0056 Heavy metal exporter H 100.0 3E-39 6.5E-44 292.9 16.1 242 12-261 496-761 (790)
349 PRK13409 putative ATPase RIL; 100.0 5.8E-39 1.3E-43 308.9 18.4 184 59-247 77-287 (590)
350 COG0396 sufC Cysteine desulfur 100.0 7.2E-38 1.6E-42 261.1 22.3 207 54-264 2-236 (251)
351 COG4172 ABC-type uncharacteriz 100.0 1.5E-38 3.3E-43 283.0 19.3 206 53-259 4-245 (534)
352 COG1134 TagH ABC-type polysacc 100.0 2.7E-38 5.9E-43 266.5 19.1 191 69-264 40-239 (249)
353 TIGR00955 3a01204 The Eye Pigm 100.0 1.3E-37 2.9E-42 301.9 22.0 193 68-264 37-259 (617)
354 TIGR00956 3a01205 Pleiotropic 100.0 2E-37 4.2E-42 321.9 24.3 200 53-256 757-988 (1394)
355 KOG0062 ATPase component of AB 100.0 1.2E-38 2.6E-43 290.6 11.2 202 54-263 79-287 (582)
356 cd03270 ABC_UvrA_I The excisio 100.0 9.5E-37 2.1E-41 261.7 20.2 179 68-250 7-223 (226)
357 TIGR01271 CFTR_protein cystic 100.0 9.8E-37 2.1E-41 318.7 24.3 184 70-261 440-636 (1490)
358 COG4167 SapF ABC-type antimicr 100.0 2.8E-37 6.2E-42 249.4 15.6 205 54-259 3-237 (267)
359 COG1101 PhnK ABC-type uncharac 100.0 7.1E-37 1.5E-41 252.7 15.5 195 55-250 1-228 (263)
360 PLN03140 ABC transporter G fam 100.0 2.2E-36 4.7E-41 313.8 23.0 198 55-256 867-1105(1470)
361 COG4133 CcmA ABC-type transpor 100.0 3.5E-37 7.6E-42 249.7 13.3 177 55-235 2-194 (209)
362 COG5265 ATM1 ABC-type transpor 100.0 1.6E-36 3.4E-41 271.4 17.9 204 54-262 261-487 (497)
363 KOG0927 Predicted transporter 100.0 2E-36 4.2E-41 277.6 16.5 201 55-262 75-310 (614)
364 TIGR00956 3a01205 Pleiotropic 100.0 2E-35 4.4E-40 306.9 22.8 192 69-264 74-303 (1394)
365 PTZ00243 ABC transporter; Prov 100.0 2.8E-35 6E-40 308.4 23.5 184 69-261 673-870 (1560)
366 COG4778 PhnL ABC-type phosphon 100.0 7.1E-37 1.5E-41 244.3 8.5 190 55-246 4-227 (235)
367 PLN03140 ABC transporter G fam 100.0 1.2E-35 2.5E-40 308.4 19.5 194 69-265 178-431 (1470)
368 COG4136 ABC-type uncharacteriz 100.0 1.2E-35 2.5E-40 233.0 13.0 187 55-244 2-207 (213)
369 KOG0054 Multidrug resistance-a 100.0 8.2E-35 1.8E-39 294.4 21.2 205 51-261 1134-1362(1381)
370 KOG0054 Multidrug resistance-a 100.0 6.7E-34 1.4E-38 287.8 26.0 202 52-261 515-731 (1381)
371 KOG0059 Lipid exporter ABCA1 a 100.0 6.9E-35 1.5E-39 292.0 16.0 207 54-262 563-788 (885)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 8.9E-34 1.9E-38 238.3 14.9 154 73-246 14-190 (197)
373 KOG0061 Transporter, ABC super 100.0 4.6E-33 9.9E-38 268.8 20.6 207 54-264 24-263 (613)
374 cd03271 ABC_UvrA_II The excisi 100.0 5.3E-32 1.1E-36 235.9 17.2 182 71-255 10-260 (261)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 9.1E-32 2E-36 228.8 15.2 180 55-249 5-211 (213)
376 PF00005 ABC_tran: ABC transpo 100.0 3E-32 6.5E-37 215.5 10.5 122 72-203 1-137 (137)
377 COG4178 ABC-type uncharacteriz 100.0 1.8E-30 3.8E-35 245.1 22.1 188 53-245 390-587 (604)
378 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.2E-30 2.5E-35 225.9 18.1 180 56-245 4-234 (243)
379 COG1245 Predicted ATPase, RNas 100.0 3.1E-30 6.7E-35 232.9 16.4 185 54-246 341-531 (591)
380 COG4615 PvdE ABC-type sideroph 100.0 2.7E-30 5.8E-35 229.9 14.2 191 54-254 321-531 (546)
381 KOG0066 eIF2-interacting prote 100.0 6.9E-31 1.5E-35 236.2 8.8 200 55-264 264-502 (807)
382 COG1129 MglA ABC-type sugar tr 100.0 2.4E-29 5.2E-34 233.2 19.3 195 52-251 260-481 (500)
383 cd03273 ABC_SMC2_euk Eukaryoti 100.0 1.1E-29 2.4E-34 221.1 13.6 163 82-245 25-242 (251)
384 cd03240 ABC_Rad50 The catalyti 100.0 2.8E-29 6E-34 212.2 14.6 156 75-246 16-197 (204)
385 cd03274 ABC_SMC4_euk Eukaryoti 100.0 1E-30 2.2E-35 222.1 5.6 179 56-246 6-204 (212)
386 COG4138 BtuD ABC-type cobalami 100.0 7.4E-30 1.6E-34 205.0 5.1 195 55-259 3-219 (248)
387 cd03275 ABC_SMC1_euk Eukaryoti 100.0 1.4E-28 3E-33 213.8 12.7 181 56-246 4-233 (247)
388 PRK00349 uvrA excinuclease ABC 100.0 1.8E-27 4E-32 237.3 21.3 106 154-261 810-927 (943)
389 cd03276 ABC_SMC6_euk Eukaryoti 100.0 8.5E-28 1.8E-32 202.2 14.4 160 72-248 12-192 (198)
390 PRK00635 excinuclease ABC subu 100.0 5.2E-27 1.1E-31 243.4 22.1 104 156-261 791-906 (1809)
391 KOG0060 Long-chain acyl-CoA tr 100.0 4.7E-27 1E-31 217.4 18.5 192 51-246 429-641 (659)
392 TIGR00630 uvra excinuclease AB 99.9 2E-26 4.3E-31 229.6 22.6 104 154-259 808-923 (924)
393 COG3845 ABC-type uncharacteriz 99.9 4.4E-26 9.4E-31 208.3 20.2 207 50-257 252-488 (501)
394 KOG2355 Predicted ABC-type tra 99.9 2.4E-26 5.3E-31 189.1 16.4 196 53-251 11-228 (291)
395 COG4170 SapD ABC-type antimicr 99.9 6E-27 1.3E-31 193.5 10.8 203 54-258 2-245 (330)
396 KOG0064 Peroxisomal long-chain 99.9 2.2E-25 4.7E-30 204.4 13.5 184 56-244 482-681 (728)
397 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.4E-25 3.1E-30 188.9 10.6 140 72-250 17-169 (200)
398 KOG0065 Pleiotropic drug resis 99.9 7.2E-26 1.6E-30 225.8 9.1 202 55-257 787-1017(1391)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.6E-24 5.6E-29 182.9 10.2 171 72-248 14-211 (213)
400 COG1245 Predicted ATPase, RNas 99.9 2.7E-24 5.9E-29 194.6 10.8 180 60-245 79-287 (591)
401 COG2401 ABC-type ATPase fused 99.9 9.7E-24 2.1E-28 189.2 13.8 177 70-249 397-587 (593)
402 cd03239 ABC_SMC_head The struc 99.9 2.3E-22 5.1E-27 166.3 15.2 71 175-246 95-172 (178)
403 cd03227 ABC_Class2 ABC-type Cl 99.9 5.7E-23 1.2E-27 167.5 9.4 137 73-246 12-155 (162)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.9 4.4E-22 9.4E-27 170.3 11.6 148 68-250 16-171 (222)
405 cd03241 ABC_RecN RecN ATPase i 99.9 1.6E-21 3.4E-26 172.2 15.2 74 173-247 169-248 (276)
406 PRK00635 excinuclease ABC subu 99.9 7.1E-21 1.5E-25 198.1 19.9 106 154-261 1679-1796(1809)
407 cd03243 ABC_MutS_homologs The 99.9 3.7E-22 8.1E-27 168.3 7.1 145 73-250 20-169 (202)
408 COG0178 UvrA Excinuclease ATPa 99.9 1.7E-20 3.8E-25 179.7 19.0 105 155-261 803-919 (935)
409 KOG0063 RNAse L inhibitor, ABC 99.8 1.1E-20 2.3E-25 170.2 11.7 179 63-246 343-532 (592)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.8 3E-20 6.5E-25 156.9 11.4 140 68-239 15-159 (204)
411 cd03283 ABC_MutS-like MutS-lik 99.8 2.7E-20 5.9E-25 156.7 8.8 134 69-237 14-154 (199)
412 KOG0065 Pleiotropic drug resis 99.8 1.2E-19 2.6E-24 181.7 13.4 195 69-264 128-354 (1391)
413 PRK00349 uvrA excinuclease ABC 99.8 2.2E-19 4.7E-24 179.8 13.1 102 157-260 472-584 (943)
414 cd03242 ABC_RecF RecF is a rec 99.8 6.7E-19 1.5E-23 154.9 14.5 77 172-249 181-269 (270)
415 TIGR00630 uvra excinuclease AB 99.8 2.9E-19 6.2E-24 178.6 13.6 102 157-260 470-582 (924)
416 cd03284 ABC_MutS1 MutS1 homolo 99.8 2E-19 4.3E-24 153.2 8.7 141 69-249 18-170 (216)
417 smart00534 MUTSac ATPase domai 99.8 7.1E-19 1.5E-23 146.4 6.2 124 84-240 1-130 (185)
418 cd03281 ABC_MSH5_euk MutS5 hom 99.7 1.8E-17 3.9E-22 140.9 13.1 128 76-238 21-161 (213)
419 TIGR01069 mutS2 MutS2 family p 99.7 1.9E-17 4.1E-22 163.7 10.0 148 55-235 295-449 (771)
420 PF02463 SMC_N: RecF/RecN/SMC 99.7 6.6E-17 1.4E-21 137.8 11.8 164 73-245 16-212 (220)
421 PRK00064 recF recombination pr 99.7 7.5E-16 1.6E-20 140.8 17.8 78 172-249 271-359 (361)
422 TIGR02858 spore_III_AA stage I 99.7 6.8E-16 1.5E-20 135.3 15.6 143 83-259 112-267 (270)
423 cd03287 ABC_MSH3_euk MutS3 hom 99.7 4.5E-16 9.6E-21 132.9 11.5 133 69-235 18-158 (222)
424 PRK13695 putative NTPase; Prov 99.6 7.1E-17 1.5E-21 132.9 4.1 152 84-252 2-156 (174)
425 KOG0063 RNAse L inhibitor, ABC 99.6 1.2E-15 2.5E-20 137.9 5.8 165 80-245 98-287 (592)
426 PRK00409 recombination and DNA 99.6 2.2E-15 4.9E-20 149.4 8.0 140 74-244 318-463 (782)
427 cd01128 rho_factor Transcripti 99.5 3.8E-14 8.3E-19 123.0 10.9 161 76-250 10-212 (249)
428 TIGR00618 sbcc exonuclease Sbc 99.5 3.1E-14 6.7E-19 146.2 10.5 80 168-247 944-1036(1042)
429 TIGR00634 recN DNA repair prot 99.5 3.5E-14 7.6E-19 137.0 10.0 74 173-247 439-518 (563)
430 PHA02562 46 endonuclease subun 99.5 3.6E-14 7.7E-19 136.9 9.4 78 171-249 465-555 (562)
431 cd03286 ABC_MSH6_euk MutS6 hom 99.5 9E-14 1.9E-18 118.5 9.2 136 69-238 17-160 (218)
432 PRK08533 flagellar accessory p 99.5 7.1E-14 1.5E-18 120.2 8.7 157 56-245 8-184 (230)
433 PRK10869 recombination and rep 99.5 1.8E-13 3.8E-18 131.5 10.4 73 174-247 430-508 (553)
434 PRK07721 fliI flagellum-specif 99.5 8.4E-13 1.8E-17 122.9 14.2 161 69-256 146-338 (438)
435 PRK06793 fliI flagellum-specif 99.5 8.2E-13 1.8E-17 122.3 13.6 162 55-250 130-301 (432)
436 PRK01156 chromosome segregatio 99.5 6E-13 1.3E-17 134.9 12.9 75 170-245 797-883 (895)
437 PTZ00132 GTP-binding nuclear p 99.4 9E-13 1.9E-17 111.9 11.5 49 172-220 148-203 (215)
438 PRK03918 chromosome segregatio 99.4 3.3E-13 7.2E-18 136.5 10.1 76 169-245 783-867 (880)
439 PF13304 AAA_21: AAA domain; P 99.4 1.7E-13 3.6E-18 116.7 5.6 64 171-234 233-302 (303)
440 cd01124 KaiC KaiC is a circadi 99.4 1.4E-12 3E-17 108.0 9.6 78 168-245 65-163 (187)
441 TIGR00606 rad50 rad50. This fa 99.4 6.8E-13 1.5E-17 139.0 8.9 75 171-245 1196-1289(1311)
442 PRK10246 exonuclease subunit S 99.4 1.7E-12 3.7E-17 133.1 10.6 78 169-246 944-1032(1047)
443 COG3910 Predicted ATPase [Gene 99.4 2.3E-11 5.1E-16 99.5 14.1 79 170-249 125-206 (233)
444 COG0178 UvrA Excinuclease ATPa 99.4 8.1E-12 1.8E-16 120.8 12.6 103 158-262 465-578 (935)
445 TIGR02168 SMC_prok_B chromosom 99.3 2.3E-12 4.9E-17 133.5 8.7 76 169-245 1084-1165(1179)
446 cd00820 PEPCK_HprK Phosphoenol 99.3 9.6E-12 2.1E-16 93.8 6.4 44 69-118 2-45 (107)
447 TIGR02788 VirB11 P-type DNA tr 99.3 9.3E-12 2E-16 111.6 7.4 143 75-260 137-280 (308)
448 PRK13830 conjugal transfer pro 99.2 1.4E-10 2.9E-15 116.4 15.1 61 190-250 650-723 (818)
449 TIGR02169 SMC_prok_A chromosom 99.2 2E-11 4.3E-16 126.6 9.1 76 170-246 1070-1151(1164)
450 cd01120 RecA-like_NTPases RecA 99.2 3.6E-11 7.9E-16 96.3 8.5 127 84-234 1-140 (165)
451 PRK02224 chromosome segregatio 99.2 3.9E-11 8.4E-16 121.6 8.7 76 171-247 778-869 (880)
452 PRK06067 flagellar accessory p 99.2 1.8E-10 3.9E-15 99.1 10.3 148 78-245 21-186 (234)
453 TIGR03238 dnd_assoc_3 dnd syst 99.1 3.9E-11 8.3E-16 111.5 5.1 47 70-118 20-67 (504)
454 TIGR00611 recf recF protein. A 99.1 3.4E-10 7.3E-15 103.7 8.0 62 174-235 275-345 (365)
455 smart00382 AAA ATPases associa 99.1 4.4E-09 9.6E-14 81.1 12.7 115 81-230 1-125 (148)
456 cd01131 PilT Pilus retraction 99.1 5.6E-10 1.2E-14 93.9 8.0 118 84-244 3-121 (198)
457 PRK05399 DNA mismatch repair p 99.0 1.6E-09 3.6E-14 109.0 10.5 135 70-240 596-738 (854)
458 COG0419 SbcC ATPase involved i 99.0 1.6E-09 3.5E-14 110.2 9.8 76 170-246 811-897 (908)
459 cd02023 UMPK Uridine monophosp 99.0 2E-09 4.2E-14 90.3 8.4 110 84-208 1-114 (198)
460 TIGR01026 fliI_yscN ATPase Fli 99.0 7.4E-09 1.6E-13 96.7 12.8 49 65-114 147-195 (440)
461 PRK14079 recF recombination pr 98.9 2.4E-09 5.3E-14 97.6 7.9 74 173-250 262-344 (349)
462 TIGR02680 conserved hypothetic 98.9 2.5E-09 5.3E-14 112.4 7.7 66 169-234 1242-1319(1353)
463 cd01125 repA Hexameric Replica 98.9 4.8E-09 1E-13 90.6 8.3 121 82-231 1-159 (239)
464 PRK06002 fliI flagellum-specif 98.9 4.9E-09 1.1E-13 97.5 8.0 63 53-116 137-199 (450)
465 COG4637 Predicted ATPase [Gene 98.9 3.5E-08 7.5E-13 86.9 12.7 72 173-244 269-344 (373)
466 PRK06995 flhF flagellar biosyn 98.8 9.5E-09 2.1E-13 96.7 8.4 164 71-249 245-429 (484)
467 cd01130 VirB11-like_ATPase Typ 98.8 3E-09 6.5E-14 88.5 3.0 45 72-116 15-59 (186)
468 TIGR02655 circ_KaiC circadian 98.8 7E-10 1.5E-14 105.3 -1.3 148 78-245 17-190 (484)
469 PLN03210 Resistant to P. syrin 98.8 5.5E-08 1.2E-12 101.4 12.1 143 74-245 199-349 (1153)
470 TIGR02903 spore_lon_C ATP-depe 98.7 5.4E-08 1.2E-12 94.9 9.4 117 81-219 174-291 (615)
471 TIGR00767 rho transcription te 98.7 2.5E-08 5.5E-13 91.4 6.3 55 54-108 129-194 (415)
472 PF00488 MutS_V: MutS domain V 98.7 7.7E-07 1.7E-11 76.8 14.9 46 190-235 120-170 (235)
473 PRK13891 conjugal transfer pro 98.7 1.4E-07 3.1E-12 95.2 11.7 52 185-236 680-735 (852)
474 TIGR01420 pilT_fam pilus retra 98.7 1.1E-07 2.5E-12 86.5 9.5 112 79-232 119-231 (343)
475 PRK07594 type III secretion sy 98.6 3.4E-08 7.4E-13 91.8 5.6 61 54-115 128-188 (433)
476 TIGR00152 dephospho-CoA kinase 98.6 3.4E-08 7.3E-13 82.2 4.6 129 84-248 1-134 (188)
477 cd01876 YihA_EngB The YihA (En 98.6 2E-07 4.3E-12 74.5 8.7 63 153-219 101-168 (170)
478 PF13555 AAA_29: P-loop contai 98.6 4.8E-08 1E-12 66.2 4.2 38 72-109 12-50 (62)
479 cd01136 ATPase_flagellum-secre 98.6 9.7E-08 2.1E-12 85.9 6.7 54 60-114 48-101 (326)
480 PF13558 SbcCD_C: Putative exo 98.6 1.1E-07 2.3E-12 69.9 5.2 50 170-219 28-90 (90)
481 PRK09862 putative ATP-dependen 98.5 7.1E-08 1.5E-12 91.5 4.8 59 58-117 187-245 (506)
482 PRK13898 type IV secretion sys 98.5 3.6E-06 7.8E-11 84.8 17.0 42 74-115 438-479 (800)
483 TIGR01070 mutS1 DNA mismatch r 98.5 4.4E-07 9.6E-12 91.3 10.3 130 71-235 582-719 (840)
484 PRK07196 fliI flagellum-specif 98.5 8E-08 1.7E-12 89.4 4.5 43 68-111 142-184 (434)
485 cd00009 AAA The AAA+ (ATPases 98.5 1.5E-06 3.3E-11 67.5 10.4 106 81-232 18-131 (151)
486 PRK00454 engB GTP-binding prot 98.5 1E-06 2.2E-11 73.1 9.7 63 153-219 126-191 (196)
487 TIGR03881 KaiC_arch_4 KaiC dom 98.5 3.6E-08 7.9E-13 84.4 0.6 26 78-103 16-41 (229)
488 PRK08149 ATP synthase SpaL; Va 98.5 2.7E-07 5.8E-12 85.8 6.3 48 67-115 137-187 (428)
489 TIGR02546 III_secr_ATP type II 98.4 2.4E-07 5.2E-12 86.4 5.3 53 61-114 125-177 (422)
490 PRK09099 type III secretion sy 98.4 3.6E-07 7.9E-12 85.3 5.9 49 67-116 149-197 (441)
491 TIGR03496 FliI_clade1 flagella 98.4 3.6E-07 7.8E-12 84.8 5.6 58 55-113 111-168 (411)
492 PRK00300 gmk guanylate kinase; 98.4 2E-07 4.3E-12 78.4 3.5 28 80-107 3-30 (205)
493 PRK14722 flhF flagellar biosyn 98.4 2E-06 4.4E-11 78.7 10.3 37 70-106 125-161 (374)
494 TIGR03498 FliI_clade3 flagella 98.4 3.7E-07 8E-12 84.8 5.4 59 56-115 115-173 (418)
495 cd01122 GP4d_helicase GP4d_hel 98.4 7.4E-06 1.6E-10 71.8 13.3 36 71-106 19-54 (271)
496 PRK10078 ribose 1,5-bisphospho 98.4 2.6E-07 5.7E-12 76.7 3.8 28 81-108 1-28 (186)
497 PRK09825 idnK D-gluconate kina 98.4 2.4E-07 5.2E-12 76.5 3.4 28 81-108 2-29 (176)
498 TIGR03497 FliI_clade2 flagella 98.4 4.5E-07 9.9E-12 84.2 5.6 53 61-114 117-169 (413)
499 PRK06315 type III secretion sy 98.4 6.6E-07 1.4E-11 83.5 6.4 46 69-115 152-198 (442)
500 PF09818 ABC_ATPase: Predicted 98.4 2.9E-06 6.3E-11 78.2 10.4 167 61-250 227-417 (448)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-57 Score=373.16 Aligned_cols=202 Identities=22% Similarity=0.358 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
++|+++|++++| ++..+|++||++|.+||+++|+||||||||||||||+||.+|++|+|.++|. .++
T Consensus 1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 479999999999 5667999999999999999999999999999999999999999999999883 258
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
|++||++. +....+.++++... ..+ ..++.+.++|+++|+.+. .+.++.+|||||||||||||||+.+|+
T Consensus 80 GmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-a~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 80 GMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred Ceeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-hhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 99999863 33344555554321 112 234567889999999864 678889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l---~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|+|||||+|||+...++++.+ .+.+.|+|+|||++.|+..+||||++|++|+++ ..|+++++.
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii-e~g~p~~~f 224 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII-EEGPPEEFF 224 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE-EecCHHHHh
Confidence 99999999999999888776655 455789999999999999999999999999987 467877763
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-54 Score=372.79 Aligned_cols=202 Identities=32% Similarity=0.513 Sum_probs=171.8
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
+|+++|++++|+ ++.+++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++++ ..++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 689999999995 678999999999999999999999999999999999999999999999885 36999
Q ss_pred EeccccCCCCCCCcHHHHHHH-----hC---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMR-----CF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+||.+.....++...+..+.+ .+ ...+.+.+.++|+.+++. ++.++++.+|||||||||.|||||+++|++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence 999964433333222222211 11 112344688899999997 467899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|||||||++||...+.++++.+++. +.|||+|+||++++.++||++++|++|+++ ..|++++.
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~-a~G~p~ev 226 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV-AQGTPEEV 226 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-eecCcchh
Confidence 9999999999999999988887654 479999999999999999999999999997 67887765
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-54 Score=368.38 Aligned_cols=204 Identities=26% Similarity=0.394 Sum_probs=174.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------eeEEEEe
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFS 125 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~ 125 (266)
++|+++|+++.|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. .+|||+|
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 579999999999645 6999999999999999999999999999999999999999999997764 4799999
Q ss_pred ccccCCCCCCCcHHHHHHHh-C---------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 126 QHHVDGLDLSSNPLLYMMRC-F---------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
|.......+..++.+.+... + ...+.+.+.++|+.+|+. ++.++++++|||||+|||.|||||+++|++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 97644455556666655431 1 112357899999999998 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||||||+|+|+.++..+.+.|++ .++||++||||++.+..+||+|+.|+.. +. +.|+++++.+
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~-~~G~~~~~~~ 227 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LI-ASGPPEEVLT 227 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eE-eccChhhccC
Confidence 999999999999999888777654 4679999999999999999999999754 43 6788877644
No 4
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-53 Score=354.53 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=175.5
Q ss_pred CcEEEEeeEEEcCCCC---cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 54 PIISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
++|+++|+++.|+.+. .++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.++|+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999996543 4999999999999999999999999999999999999999999999883
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHHhC----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
..+.++||++...++...++..-+.... ....++++.++|+.+|+.+...++++.+|||||+||+||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 3588999999776666655443332211 123456689999999999989999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
+||||||||+||+....++++.|.+ ++.|+|+||||+..+..+||||++|++|++++ .++..+
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE-~~~~~~ 228 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE-IGPTEE 228 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE-eechhh
Confidence 9999999999999999998888754 45699999999999999999999999999974 444444
No 5
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.5e-52 Score=392.66 Aligned_cols=262 Identities=42% Similarity=0.717 Sum_probs=224.9
Q ss_pred ChHHHHHHhhhhhhHHHHHHHHHHHHhccCc---ccccCCCC-cccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeece
Q 024529 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHV---DEVVNDPD-YKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLN 76 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vs 76 (266)
+++||++....+++.+.++++.++++++... ........ ..+.++.+....++.+++++|+++.|++++.+++++|
T Consensus 263 ~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s 342 (530)
T COG0488 263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLS 342 (530)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCce
Confidence 4689999998888888899999999887632 22221111 2234444332356789999999999966568999999
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (266)
|.|.+|+++||+||||+|||||||+|+|...|.+|+|.+....++||+.|+... +....++++++....+...+..++.
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~-l~~~~t~~d~l~~~~~~~~e~~~r~ 421 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE-LDPDKTVLEELSEGFPDGDEQEVRA 421 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh-cCccCcHHHHHHhhCccccHHHHHH
Confidence 999999999999999999999999999999999999999888999999998733 2344567787776665555788999
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHh
Q 024529 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISG 236 (266)
Q Consensus 157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~ 236 (266)
+|..|+++.+...+++..||||||.|+.||+.++.+|++|||||||||||..+++.+.+.|.++.+|||+||||++|+.+
T Consensus 422 ~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 237 SVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 237 ~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
+|+++|++.+ ++..+.|+|++|.+...
T Consensus 502 va~~i~~~~~-~~~~~~g~y~~y~~~~~ 528 (530)
T COG0488 502 VATRIWLVED-KVEEFEGGYEDYLEQKK 528 (530)
T ss_pred hcceEEEEcC-ceeEcCCCHHHHHHhhc
Confidence 9999999998 88788999999987654
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.4e-53 Score=352.34 Aligned_cols=206 Identities=25% Similarity=0.409 Sum_probs=172.1
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 118 (266)
.+.|++++|+++| +++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|++.|.
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 4679999999999 5678999999999999999999999999999999999999999999998874
Q ss_pred eeEEEEecccc--CCCCCCCcHHHHHHHhCCCCcHHH----HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 119 VRIAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQK----LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 119 ~~i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
.++|++||... ..+++.+|+...+.. +...++.. +..-|+.+|+.....++.+++|||||++|++||||++.+
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre-~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLRE-HTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHh-hccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 36999999863 333333333322222 22444444 444588899988767889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|++|++||||+||||.+...+-+.+++ .+.|+++||||++.+..+|||++++.+|++. +.|+++++.+
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 999999999999999887665555443 4679999999999999999999999999996 8999998754
No 7
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-52 Score=401.82 Aligned_cols=258 Identities=39% Similarity=0.714 Sum_probs=204.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEEeCC
Q 024529 3 SFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLD 82 (266)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~G 82 (266)
+|+.+++..+.+.+.++++.+.++++.............+.++.+. ..+.++|+++|+++.|+ ++.+|+|+||+|.+|
T Consensus 261 ~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~-~~~il~~isl~i~~G 338 (638)
T PRK10636 261 SYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPE-SLPNPLLKMEKVSAGYG-DRIILDSIKLNLVPG 338 (638)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCc-cCCCceEEEEeeEEEeC-CeeeeccceEEECCC
Confidence 4566655555566667777777777643221111111222333222 23467899999999995 457999999999999
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (266)
++++|+|||||||||||++|+|+++|++|+|.+.....++|++|+....+....+....+...........+.++|+.++
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 418 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG 418 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence 99999999999999999999999999999999876678999999743223333344444332222233567889999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEE
Q 024529 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW 242 (266)
Q Consensus 163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~ 242 (266)
+.....++++++|||||||||+||++|+.+|+||||||||||||+.++..+.+.|.++++|||+||||++++..+||+++
T Consensus 419 l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~ 498 (638)
T PRK10636 419 FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLY 498 (638)
T ss_pred CChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEE
Confidence 96545678999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEeCCeEEecCCChhHHHHH
Q 024529 243 VVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 243 ~l~~G~i~~~~g~~~~~~~~ 262 (266)
+|++|+++.+.|++++|.+.
T Consensus 499 ~l~~G~i~~~~g~~~~~~~~ 518 (638)
T PRK10636 499 LVHDGKVEPFDGDLEDYQQW 518 (638)
T ss_pred EEECCEEEEcCCCHHHHHHH
Confidence 99999997789999999543
No 8
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-52 Score=354.07 Aligned_cols=190 Identities=27% Similarity=0.389 Sum_probs=161.7
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEecc
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQH 127 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q~ 127 (266)
.+++++++++.|+ ...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++++ ..++|+||+
T Consensus 2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 4689999999995 477999999999999999999999999999999999999999999999875 379999998
Q ss_pred ccCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 128 HVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
+. +....+..++..... .....+++.++|+.+|+.+ ..++++++|||||||||+|||||+.+|++||||||
T Consensus 81 ~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 81 DA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred Cc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 64 223344444432111 1123457889999999986 56789999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529 202 SNHLDLDAVEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSEG 247 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l----~~~~~tiiivtHd~~~~~~~~d~i~~l~~G 247 (266)
|++||..++..+.+.+ .+.+.||++||||.+++..++|||++|.++
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999988776655 445789999999999999999999999983
No 9
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-52 Score=353.69 Aligned_cols=201 Identities=24% Similarity=0.338 Sum_probs=171.4
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
||+++||||.|+ ++.+++|+||+|++||+++++|||||||||+||+|.+++.|++|+|++++. .+|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 689999999995 667999999999999999999999999999999999999999999999874 36999
Q ss_pred EeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
+-|..- +....++.+++... ..++ ..+++.++|+.+|+++ .+.++++++|||||+|||.+||||+.+|+||
T Consensus 80 viQqig--LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 80 VIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhcc--cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 999753 33344454444321 1122 2467889999999975 4788999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||||||++|||.++..+.+.+.+ .++|||+||||++++.+++|||.+|++|+++.+ ++++++
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~i 223 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEI 223 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHH
Confidence 99999999999999988776653 578999999999999999999999999999864 665554
No 10
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.9e-51 Score=400.84 Aligned_cols=261 Identities=95% Similarity=1.483 Sum_probs=203.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEEeCC
Q 024529 3 SFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLD 82 (266)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~G 82 (266)
+|+++++.++++.+.++++.+.++++........++.....++.+...++.++|+++|+++.|++++.+|+|+||+|.+|
T Consensus 456 ~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~G 535 (718)
T PLN03073 456 AFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLD 535 (718)
T ss_pred HHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCC
Confidence 34555555555555555555555554322111111111122222111233468999999999964556899999999999
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (266)
++++|+||||||||||||+|+|+++|++|+|.+.++..++|++|++...++...+....+.........+++.++++.++
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g 615 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 615 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999888888999999864444444343333322233345677889999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEE
Q 024529 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW 242 (266)
Q Consensus 163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~ 242 (266)
+.+...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.+.++++|||+||||++++..+||+++
T Consensus 616 l~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~ 695 (718)
T PLN03073 616 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELW 695 (718)
T ss_pred CChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 97545678999999999999999999999999999999999999999999999998877799999999999999999999
Q ss_pred EEeCCeEEecCCChhHHHHHH
Q 024529 243 VVSEGKATPFHGTFHDYKKML 263 (266)
Q Consensus 243 ~l~~G~i~~~~g~~~~~~~~~ 263 (266)
+|++|+++.+.|++++|.+..
T Consensus 696 ~l~~G~i~~~~g~~~~~~~~~ 716 (718)
T PLN03073 696 VVSEGKVTPFHGTFHDYKKTL 716 (718)
T ss_pred EEECCEEEEeCCCHHHHHHHh
Confidence 999999977899999998765
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-52 Score=348.78 Aligned_cols=205 Identities=27% Similarity=0.422 Sum_probs=176.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------e
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V 119 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~ 119 (266)
++|+++||++.|++++.+|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++. .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 57999999999988889999999999999999999999999999999999999999999998772 3
Q ss_pred eEEEEeccccCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l 185 (266)
.+||++|.+. +....+++.+.. ..++..+...+.++|+++|+.+. ..++.++|||||+|||+|
T Consensus 82 ~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-AYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-HHHHhccCCcchhHHHHH
Confidence 6999999863 222333333322 11223345667889999999854 568889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||||+++|+++|.|||+++|||.+.+.+++.|++. +.|+|++.|+++.+.++|||++-|++|+++ |+|+.+++.+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhH
Confidence 99999999999999999999999999999988753 579999999999999999999999999997 9999987654
Q ss_pred H
Q 024529 262 M 262 (266)
Q Consensus 262 ~ 262 (266)
.
T Consensus 238 ~ 238 (258)
T COG3638 238 E 238 (258)
T ss_pred H
Confidence 3
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-51 Score=355.94 Aligned_cols=201 Identities=25% Similarity=0.370 Sum_probs=170.4
Q ss_pred cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
||++++|+|.|+.. ..+++||||+|++||++||+|.||||||||+|||.+|.+|++|+|.++|.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 68999999999652 46899999999999999999999999999999999999999999999883
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
.+||++||++. +-.+.++..++... ..+ .-++++.++|+.+|+++ ..++++.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~d-k~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSD-KADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChh-hhccCchhcCcchhhHHHHHHHHh
Confidence 36999999863 22223444443211 111 23567889999999985 567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
.+|+|||.|||||+|||++...+++.|++ .+.||++|||.++.+.++|||+.+|++|+++ ..|++.++
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv-E~G~v~~v 229 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV-EEGTVSEV 229 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE-EeccHHHh
Confidence 99999999999999999999988888764 4679999999999999999999999999997 46776664
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.3e-51 Score=344.47 Aligned_cols=193 Identities=30% Similarity=0.424 Sum_probs=161.8
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
+++++||++.|+.+ ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|++.+.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 47899999999643 36899999999999999999999999999999999999999999998873
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..+||+||++.. -...+..+++.. .+.. ...+.+..+++.+|+.+...++++.+|||||||||||||||+
T Consensus 81 R~~~iGfvFQ~~nL--l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNFNL--LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccCCC--CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 259999998642 223344444321 1112 234567888999999866665889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
.+|+++|.||||.+||.++.+.+++.+.+. +.||||||||.+.+. +|||++.|.+|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999998887654 569999999999887 79999999999953
No 14
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-50 Score=346.65 Aligned_cols=206 Identities=32% Similarity=0.484 Sum_probs=176.7
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
+++.+++++|.|+++..+|+++||+|++|++++|+|+||||||||+++++|+++|++|.|.+++. .++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47899999999976667999999999999999999999999999999999999999999987663 359
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
||++|++...+ +..++.+.+.... .+. ...++.++++.+++.+ ..++++.+|||||||||+||.+|+.+|++
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 99999985443 4445555543211 122 2456788999999985 47899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
|||||||++||+.++..+++.+.++ +.|||++|||++++..+||++++|++|+++ ++|++.++.+.
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~~ 229 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFND 229 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhhh
Confidence 9999999999999999998888764 359999999999999999999999999996 78998877654
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-50 Score=357.13 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=173.7
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~ 124 (266)
+++++|+++.|++++.+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.+.+. ..+||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 5789999999953568999999999999999999999999999999999999999999998873 359999
Q ss_pred eccccCCCCCCCcHHHHH-HHhCCC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 125 SQHHVDGLDLSSNPLLYM-MRCFPG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
+|++.....++......+ ...+.. ...+++.++++.+++.+ ..++++++||+|||||++||+||+.+|++|||||
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 999753333332222222 222221 23567899999999986 3478899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 201 PSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~---~-~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
||+||||.++..+.+.|++. + .||+++||.++.+..+||+|++|++|+++ +.|+.+++...
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~-~~g~~~~l~~~ 227 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEK 227 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHHh
Confidence 99999999999988887654 4 59999999999999999999999999997 67888887654
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=361.98 Aligned_cols=204 Identities=25% Similarity=0.349 Sum_probs=173.0
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEE
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV 123 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~ 123 (266)
.+.++++||++.|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+ ..+++
T Consensus 3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 35799999999995 678999999999999999999999999999999999999999999999885 36999
Q ss_pred EeccccCCCCCCCcHHHHHHHhC---CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCF---PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
+||+... ....++.+++.... ... ..+++.++|+.+++.+ ..++++.+|||||+|||+|||||+.+|++|
T Consensus 82 VFQ~YAL--FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 82 VFQSYAL--FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eecCccc--CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 9999743 23344544433211 111 2357899999999985 677899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||||+|+||..-+.++...++ +.+.|.|+||||.+++..++|||.+|++|++. -.|+++++..
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~-Q~gtP~eiY~ 226 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE-QVGTPEEIYE 226 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee-ecCCHHHHhh
Confidence 9999999999988777766654 45779999999999999999999999999996 4688877643
No 17
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2e-49 Score=354.45 Aligned_cols=204 Identities=24% Similarity=0.360 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAV 123 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~ 123 (266)
++|+++||++.|+ +..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+||
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 5799999999995 467999999999999999999999999999999999999999999998764 35999
Q ss_pred EeccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 124 FSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
++|++.. ....+..+++. ....+.. ..++.++++.+++.+ ..++++++||||||||++||+||+.+|++||
T Consensus 85 v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 85 VPQFDNL--DPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-KADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred EeccCcC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9998642 22234444432 1111222 345678899999974 5678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 198 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
|||||+|||+.++..+++.+++. +.|||++||+++++..+||+|++|++|+++ +.|+++++.+.
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 228 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIES 228 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhc
Confidence 99999999999999998888764 569999999999999999999999999996 68999887543
No 18
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.3e-49 Score=382.27 Aligned_cols=208 Identities=31% Similarity=0.578 Sum_probs=180.0
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
+.++|+++||++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....++|++|+.. .
T Consensus 316 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~-~ 393 (635)
T PRK11147 316 GKIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRA-E 393 (635)
T ss_pred CCceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccc-c
Confidence 466899999999995 45699999999999999999999999999999999999999999999855568999999752 2
Q ss_pred CCCCCcHHHHHHHhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529 132 LDLSSNPLLYMMRCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207 (266)
Q Consensus 132 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~ 207 (266)
+....++..++...... .....+.++++.+++.....++++++|||||||||+|||||+.+|++|||||||||||+
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 33344555555332111 11456788899999965456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEe-CCeEEecCCChhHHHH
Q 024529 208 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVS-EGKATPFHGTFHDYKK 261 (266)
Q Consensus 208 ~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~-~G~i~~~~g~~~~~~~ 261 (266)
.+...+.+.+.++++|||+||||++++..+||++++|+ +|++..|.|+|++|.+
T Consensus 474 ~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 474 ETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999988899999999999999999999998 8999999999999954
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-49 Score=354.62 Aligned_cols=202 Identities=24% Similarity=0.365 Sum_probs=172.0
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVF 124 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~ 124 (266)
.+|+++||++.|++.. +++++||+|+.||+++|+||||||||||||+|+|+++|++|+|+++++ ..++++
T Consensus 2 ~~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 2 AELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred cEEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 3689999999995433 899999999999999999999999999999999999999999999885 369999
Q ss_pred eccccCCCCCCCcHHHHHHHhC--C----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 125 SQHHVDGLDLSSNPLLYMMRCF--P----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
||+.. ++...++.+++.... . ...++++.++++.+++.+ +.++++.+|||||||||+|||||+.+|+++||
T Consensus 81 FQ~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 81 FQNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred eCCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 99975 344556666654221 1 123577899999999975 56788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 199 DEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+|+||...+..+...+++ .+.|+|+||||..++..++|||.+|++|++.. .|++.++.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~ely 222 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLELY 222 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHHHh
Confidence 999999999988777666654 46799999999999999999999999999974 56666654
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.7e-49 Score=356.19 Aligned_cols=205 Identities=25% Similarity=0.350 Sum_probs=172.7
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEE
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 122 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~ 122 (266)
.++|+++||++.|+ +..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 39 ~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 39 TVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred ceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 45799999999995 556999999999999999999999999999999999999999999998774 3599
Q ss_pred EEeccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++|++... ...+..+++. ....... .+.+.++++.+++.+ ..++++.+||||||||++||+||+.+|++|
T Consensus 118 ~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 118 VVPQFDNLD--LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEeCCccCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999986422 2233444332 1111221 345667899999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
||||||+|||+.++.++++.|.++ +.|||++||+++++..+||+|++|++|+++ +.|+.+++.+.
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 262 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALIDE 262 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhh
Confidence 999999999999999998888764 579999999999999999999999999996 78998887543
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.8e-49 Score=354.95 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=169.5
Q ss_pred cEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
||+++|+++.|++ ...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999953 236899999999999999999999999999999999999999999998764
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
..++|++|++. +....+..+++... .... ..+++.++++.+|+.+ ..++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHh
Confidence 25999999863 22233444443221 1111 2346788999999974 5678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|++|||||||++||+.+...+++.|++. +.|||+|||+++.+..+||++++|++|+++ ..|+++++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999988877653 679999999999999999999999999997 578877663
No 22
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-49 Score=338.64 Aligned_cols=200 Identities=26% Similarity=0.350 Sum_probs=166.4
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------eeE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 121 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~i 121 (266)
|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999995 456999999999999999999999999999999999999999999988663 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh---CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC---FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
+|++|++.. ....+..+++... ..... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 80 ~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 80 GMLFQSGAL--FDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EEEccCccc--CCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999998632 2223444443211 11111 345677899999975 4578889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 225 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELR 225 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHc
Confidence 99999999999999999988887653 579999999999999999999999999996 678877764
No 23
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.5e-49 Score=334.99 Aligned_cols=192 Identities=30% Similarity=0.443 Sum_probs=160.8
Q ss_pred cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------e
Q 024529 55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~ 119 (266)
||+++|++++|+++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 58899999999643 46999999999999999999999999999999999999999999998763 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
.++|++|++.. ....+..+++... ... ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus 81 ~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHRL--LSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCccc--cccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 48999998632 2223444433211 111 12456788999999974 457888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999998888754 57999999999999999999999999974
No 24
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-48 Score=369.23 Aligned_cols=209 Identities=31% Similarity=0.579 Sum_probs=180.1
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (266)
.++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.++..++|++|++...+
T Consensus 317 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 46899999999995 45689999999999999999999999999999999999999999999998888999999853222
Q ss_pred CCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 024529 133 DLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211 (266)
Q Consensus 133 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~ 211 (266)
....+...++.... .....+++.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++.
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 22234444432211 12235668889999999534567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 212 ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 212 ~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
.+.+.|.++++|||+||||++++..+||++++|++|+++.+.|+++++.+.
T Consensus 476 ~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 476 SLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999998889999999999999999999999999997688999988654
No 25
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.5e-49 Score=349.86 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=170.5
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEE
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA 122 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~ 122 (266)
+.+|+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 2 NVAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred CcEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 35799999999995 456999999999999999999999999999999999999999999998763 3589
Q ss_pred EEeccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++|++.. ....+..+++. ....... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 81 ~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 81 VVPQFDNL--DPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADVRVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred EEeccccC--CcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998632 22234444432 1111122 234667899999974 467889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ +.|+.+++..
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 224 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID 224 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999998888764 579999999999999999999999999996 6788888754
No 26
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-49 Score=342.49 Aligned_cols=202 Identities=24% Similarity=0.336 Sum_probs=171.4
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~ 122 (266)
+|.++++++.| +...+++||||+|+.||.+|++||||||||||||+|+|++.|++|.|.++++ .+||
T Consensus 2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 68899999999 4567899999999999999999999999999999999999999999998876 3699
Q ss_pred EEeccccCCCCCCCcHHHHHHHhC------C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCF------P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
|++|+.. +....++.+++.... + .....++.++|+.+.+. .+.++++.+|||||||||||||||+..|+
T Consensus 81 fvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 81 FVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 9999974 223345555543221 1 12356788899999997 46789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+||||||+++||..-+..+...|. +++.|.++||||.+++.++||||++|++|+|. -.|+++++..
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie-qvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE-QVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee-eeCCHHHHhc
Confidence 999999999999988777766654 45789999999999999999999999999996 4688877643
No 27
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.4e-49 Score=319.95 Aligned_cols=195 Identities=27% Similarity=0.423 Sum_probs=165.8
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------ee
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~ 120 (266)
||+++||++.|++++.+|+||||+|++||++-|+||||||||||||+|++..+|++|+|++++. .+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 6899999999998877999999999999999999999999999999999999999999998764 36
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
||++||++.. -...+++++..... +..-.+++.++|+.+|+.+. .+.-+.+|||||+|||+||||++.+|+
T Consensus 81 IGvVFQD~rL--L~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k-~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQDFRL--LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHK-ARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEeeeccc--cccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchh-hhcCccccCchHHHHHHHHHHHccCCC
Confidence 9999998632 22334444432211 11235678899999999864 456678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEec
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPF 252 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 252 (266)
+||.||||.+|||....++++.+.+ .|.||||+|||.+.+..+-.|++.+++|+++..
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 9999999999999998888777655 467999999999999999999999999999743
No 28
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.4e-49 Score=331.11 Aligned_cols=192 Identities=22% Similarity=0.379 Sum_probs=160.9
Q ss_pred EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEEEEeccc
Q 024529 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHH 128 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~~~~q~~ 128 (266)
+++|+++.|++++.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.. .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 368999999542579999999999999999999999999999999999999999999988743 589999985
Q ss_pred cCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529 129 VDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206 (266)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD 206 (266)
...+ ...+..+++... .......++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 2111 123444444321 11223457889999999975 4678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 207 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 207 ~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999998888654 569999999999999999999999999873
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-48 Score=353.86 Aligned_cols=202 Identities=24% Similarity=0.318 Sum_probs=170.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
+|+++|++++|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 6899999999943456999999999999999999999999999999999999999999998874 3599999
Q ss_pred ccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++.. ....++.+++.... ... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 83 Q~~~l--fp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QNYAL--YPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CCccc--cCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 98642 23344555443211 111 1356788999999974 678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||++||+.++..+.+.|++ .+.|+|+||||.+++..+||++++|++|+++ ..|+++++.
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~-~~g~~~~~~ 223 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE-QIGTPVEVY 223 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EECCHHHHH
Confidence 99999999999988887754 3679999999999999999999999999997 568887764
No 30
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-48 Score=338.63 Aligned_cols=199 Identities=26% Similarity=0.307 Sum_probs=167.0
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEe
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFS 125 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~ 125 (266)
..++|+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 9 ~~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 9 QGTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CCCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 346799999999995 457999999999999999999999999999999999999999999988764 2589999
Q ss_pred ccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L 205 (266)
|++. +....+..+++.........+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 88 q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 88 QDAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred cCcc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9863 2222355555432221223456788999999974 457888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529 206 DLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255 (266)
Q Consensus 206 D~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~ 255 (266)
|+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..++
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~-~~~~ 217 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG-LDLT 217 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecc
Confidence 999999988877643 579999999999999999999999999986 3443
No 31
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-48 Score=332.08 Aligned_cols=191 Identities=28% Similarity=0.390 Sum_probs=160.2
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q 126 (266)
|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 47899999995 457999999999999999999999999999999999999999999998764 25899999
Q ss_pred cccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 80 DYAL--FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred chhh--ccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8632 222344444321 11111 2345778899999974 4578889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999998888653 569999999999999999999999999986
No 32
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-48 Score=332.52 Aligned_cols=198 Identities=22% Similarity=0.318 Sum_probs=164.8
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEe
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~ 125 (266)
|+++|+++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 57899999995 457999999999999999999999999999999999999999999998763 2589999
Q ss_pred ccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus 80 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 80 QDLSV--DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred CCccc--cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 98632 222344433321 11111 2346788999999974 467889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
|||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 218 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII-AEGTPEE 218 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EeCChHH
Confidence 999999999999988877652 569999999999999999999999999996 5677655
No 33
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=9e-49 Score=369.49 Aligned_cols=206 Identities=34% Similarity=0.597 Sum_probs=179.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.+|+++|+++.| +++.+|+++||+|.+|+++||||+||||||||||+|+|...|++|+|......+++|++|++....
T Consensus 2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~- 79 (530)
T COG0488 2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP- 79 (530)
T ss_pred ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC-
Confidence 479999999999 567899999999999999999999999999999999999999999999998889999999975322
Q ss_pred CCCcHHHHHHHhC------------------------------------CCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 024529 134 LSSNPLLYMMRCF------------------------------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177 (266)
Q Consensus 134 ~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 177 (266)
..++...+.... ....+.++..++..+|+... ++++++|||
T Consensus 80 -~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 80 -EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred -CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 222222211100 00123567788889999764 789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 178 GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
|||.||+||+||+.+|++|||||||||||..++.|+.+.|+++.+|+|+||||++|+.++|++|+.++.|++..|.|+|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 024529 258 DYKKMLQ 264 (266)
Q Consensus 258 ~~~~~~~ 264 (266)
.|.++..
T Consensus 237 ~~~~~r~ 243 (530)
T COG0488 237 SYLEQKA 243 (530)
T ss_pred HHHHHHH
Confidence 9977654
No 34
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-49 Score=324.10 Aligned_cols=206 Identities=20% Similarity=0.303 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~ 124 (266)
||++.+++++|+.-..+++||||+++.|+++||+|||||||||+||+|++++.|++|.|+.++. ..||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 6899999999965445899999999999999999999999999999999999999999998763 357877
Q ss_pred eccccCCCCCCCcHHH---HHHHhC---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 125 SQHHVDGLDLSSNPLL---YMMRCF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
+.+. +++...+..+ ++...+ ....+.++.++.+.+++.+ ..++++..||.||||||+|||||+++|++++|
T Consensus 81 ~~e~--glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 81 FGER--GLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-YLDRRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred cCCc--ChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 7432 2222233322 232222 1223567888999999975 56789999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 199 DEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
||||||||..+...+.+.+++ .+.+||++||++++++.+||+++++++|+++ +.|+.+.+.....
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~~ 225 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDARTV 225 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHHh
Confidence 999999999998888777654 4679999999999999999999999999997 7899888765543
No 35
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-48 Score=335.09 Aligned_cols=201 Identities=26% Similarity=0.320 Sum_probs=167.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
+|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEEC-CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 489999999995 456999999999999999999999999999999999999999999998763 2489999
Q ss_pred ccccCCCCCCCcHHHHHHHh---CC-----CC--cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 126 QHHVDGLDLSSNPLLYMMRC---FP-----GV--PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~---~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
|++.. ....+..+++... .. .. ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++
T Consensus 81 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 81 QHYAL--FRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred cCCcc--cCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 98632 2223444433211 10 11 1245678899999964 56788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE-QVGTPDEVY 225 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHHh
Confidence 9999999999999999988887653 569999999999999999999999999996 578877764
No 36
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.6e-48 Score=345.13 Aligned_cols=203 Identities=22% Similarity=0.350 Sum_probs=172.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~ 124 (266)
+++++|++++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 489999999995 567999999999999999999999999999999999999999999998774 258999
Q ss_pred eccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 125 SQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
+|++.. ....+..+++. ....+.. .+++.++++.+++.+ ..+++++.||||||||++|||||+.+|++|||
T Consensus 81 ~q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 81 PEHNPL--YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred cCCCCC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998642 22234444432 1111222 356788999999975 46788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 199 DEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
||||+|||+.+++.+++.++++ +.|||++||+++++..+||++++|++|+++ +.|+.+++.+.
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 222 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSAA 222 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHHh
Confidence 9999999999999999888765 469999999999999999999999999997 78999988653
No 37
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-48 Score=351.32 Aligned_cols=203 Identities=24% Similarity=0.375 Sum_probs=172.1
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEE
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV 123 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~ 123 (266)
.++|+++|+++.|+ +..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35799999999995 456899999999999999999999999999999999999999999998874 36999
Q ss_pred EeccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
++|++.. ....++.+++.... ... ..+++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++||
T Consensus 83 vfQ~~~l--fp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 83 VFQSYAL--FPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EeCCccc--CCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9998642 22334554443211 111 2456788999999974 5678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 198 LDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||++||+..+.++.+.|++ .+.|+|+||||.+++..+||++++|++|++. ..|+++++.
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~-~~g~~~~~~ 225 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM-QIGSPQELY 225 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999988887764 3679999999999999999999999999997 568887764
No 38
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.8e-48 Score=351.20 Aligned_cols=203 Identities=23% Similarity=0.351 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVF 124 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~ 124 (266)
++|+++|++++|+ +..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++++ ..++|+
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4799999999995 456899999999999999999999999999999999999999999998874 359999
Q ss_pred eccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 125 SQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
+|++.. ....++.+++.... ... ...++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~Q~~~l--fp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 82 FQSYAL--FPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred eCCccc--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998642 22334444443211 111 2456888999999975 57789999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 199 DEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||||++||+.++..+.+.|++ .+.|+|+||||.+++..+||++++|++|+++ ..|+++++.+
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~-~~g~~~~~~~ 224 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE-QVGTPQEIYR 224 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999988887764 3679999999999999999999999999997 5688877643
No 39
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.9e-48 Score=335.30 Aligned_cols=202 Identities=27% Similarity=0.389 Sum_probs=167.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------ee
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~ 120 (266)
||+++|+++.|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 4789999999952456999999999999999999999999999999999999999999998763 23
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA 186 (266)
++|++|++.. ....+..+++.... .....+++.++++.+++.. ..++++.+||||||||++||
T Consensus 81 i~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQHYNL--IERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-KAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCCCcc--cccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHH
Confidence 8999998532 22234444432110 0112346778899999964 45788899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHhC
Confidence 9999999999999999999999999888877653 569999999999999999999999999996 678877753
No 40
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-48 Score=333.82 Aligned_cols=202 Identities=27% Similarity=0.405 Sum_probs=167.0
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------eeE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 121 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~i 121 (266)
|+++|+++.|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999954256999999999999999999999999999999999999999999988763 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
+|++|++.. ....+..+++.... .....+++.++++.+++.. ..++++.+||||||||++|||
T Consensus 81 ~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQFNL--IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEcccCcc--cccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-hhCCCcccCCHHHHHHHHHHH
Confidence 999998632 22234444332110 0112345778899999964 567888999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~ 234 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPPAELTD 234 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecCHHHhhH
Confidence 999999999999999999999999988887653 579999999999999999999999999996 6788887743
No 41
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-48 Score=342.13 Aligned_cols=205 Identities=26% Similarity=0.377 Sum_probs=169.1
Q ss_pred cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------
Q 024529 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------- 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------- 119 (266)
||+++|+++.|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 58999999999633 258999999999999999999999999999999999999999999987631
Q ss_pred ----eEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 120 ----RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 120 ----~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
.++|++|++...+ +..+..+++... ..+.. ..++.++++.+++.....++++..||||||||++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQL-FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhc-ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 4899999863222 123444444211 11121 345778899999964456788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+.+|++|||||||++||+.++..+.+.|.+ .+.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHc
Confidence 999999999999999999999988887754 3579999999999999999999999999997 6798888643
No 42
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-48 Score=349.20 Aligned_cols=202 Identities=24% Similarity=0.352 Sum_probs=168.4
Q ss_pred cEEEEeeEEEcC--C-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYP--G-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~--~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
||+++|++++|+ + ...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 589999999996 2 356999999999999999999999999999999999999999999998763
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
..++|++|++. +....+..+++... .... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.
T Consensus 81 ~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-KADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHc
Confidence 25999999864 22223444443211 1111 1346778899999974 5678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|++|||||||++||+.++..+++.|++. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~-~~g~~~~~~ 229 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV-EQGTVSEVF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999998888653 569999999999999999999999999996 567776653
No 43
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-48 Score=342.44 Aligned_cols=203 Identities=26% Similarity=0.362 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 56 ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 56 l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 8999999999642 45999999999999999999999999999999999999999999988774
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..++|++|++...+. ..+..+++... ..... .+++.++++.+++.....++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 248999998632221 23444443211 11111 2457788999999645567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.+|++|||||||++||+.++..+++.|++. +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 234 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF 234 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999988877643 579999999999999999999999999996 678877753
No 44
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-48 Score=340.08 Aligned_cols=203 Identities=30% Similarity=0.403 Sum_probs=169.0
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
++|+++|+++.|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 37999999999964456999999999999999999999999999999999999999999998773 2489
Q ss_pred EEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++|++...+ ...+...++... .... ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|
T Consensus 83 ~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 83 LVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-FRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999862111 223444444211 1111 1345778899999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||||||++||+.++.++.+.+.+. +.|||++|||++++..+||++++|++|+++ +.|+++++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL-AEGDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHh
Confidence 999999999999999998888654 579999999999999999999999999996 56777654
No 45
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=6.4e-48 Score=326.65 Aligned_cols=191 Identities=23% Similarity=0.358 Sum_probs=162.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q 126 (266)
|+++|++++|+ +..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 47899999995 457999999999999999999999999999999999999999999998774 25899999
Q ss_pred cccCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529 127 HHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~ 204 (266)
++. +....+..+++.. .......+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++
T Consensus 80 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 80 APG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 853 2223344444321 111234567888999999974 45788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 205 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 205 LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999988887653 579999999999999999999999999986
No 46
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.3e-48 Score=332.60 Aligned_cols=200 Identities=25% Similarity=0.388 Sum_probs=166.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~ 123 (266)
|+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999995 456999999999999999999999999999999999999999999988763 24899
Q ss_pred EeccccCCCCCCCcHHHHHHHh---CCC-------------CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRC---FPG-------------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
++|++.. ....+..+++... ... ...+.+.++++.+++.. ..++++.+|||||+||++|||
T Consensus 80 v~q~~~l--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPRL--FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred Eeccccc--ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhCChhhCCHHHHHHHHHHH
Confidence 9998632 2223444333211 101 11335778899999974 567889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 231 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI-AEGTPDEVR 231 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-eecCHHHhc
Confidence 999999999999999999999999998888653 569999999999999999999999999996 678887764
No 47
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.4e-48 Score=355.11 Aligned_cols=201 Identities=26% Similarity=0.430 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++
T Consensus 2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4799999999995 567999999999999999999999999999999999999999999998773 2589
Q ss_pred EEeccccCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++...+ ..+..+++... +. ....+++.++++.+++. ...++++.+||||||||++|||||+++
T Consensus 81 ~v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 81 SVPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999864322 33444433211 11 12345678899999997 456789999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|++|||||||++||+.++..+++.|+++ +.|||++|||++++.++||++++|++|+++ ..|+++++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv-~~G~~~ev 226 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR-AAGPPADV 226 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 9999999999999999998888877654 569999999999999999999999999997 67998875
No 48
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=9.6e-48 Score=346.60 Aligned_cols=208 Identities=20% Similarity=0.313 Sum_probs=171.2
Q ss_pred CCCcEEEEeeEEEcCC------------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-
Q 024529 52 GPPIISFSDASFGYPG------------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~- 118 (266)
..++|+++||++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3568999999999952 135899999999999999999999999999999999999999999998763
Q ss_pred -------------eeEEEEeccccCCCCCCCcHHHHHHH---hC-CCCc----HHHHHHHHHhcCCCcccccCCCCCCCh
Q 024529 119 -------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CF-PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSG 177 (266)
Q Consensus 119 -------------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSg 177 (266)
..++|++|++...+....+..+++.. .. .... .+.+.++++.+++.+...++++.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 25999999974333333444444321 11 1122 345678899999965566788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecC
Q 024529 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFH 253 (266)
Q Consensus 178 GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~ 253 (266)
||+|||+|||||+.+|++||+||||++||+.++.++++.|++. +.|||+||||++++..+||++++|.+|+++ ..
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~ 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-EL 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EE
Confidence 9999999999999999999999999999999999888877543 679999999999999999999999999997 46
Q ss_pred CChhHHH
Q 024529 254 GTFHDYK 260 (266)
Q Consensus 254 g~~~~~~ 260 (266)
|+.+++.
T Consensus 244 g~~~~i~ 250 (331)
T PRK15079 244 GTYDEVY 250 (331)
T ss_pred cCHHHHH
Confidence 7766653
No 49
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.3e-47 Score=350.43 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=172.1
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEE
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIA 122 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~ 122 (266)
..++|+++|+++.|+ +..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 456799999999995 456899999999999999999999999999999999999999999998875 2599
Q ss_pred EEeccccCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++|++. +....++.+++.... .... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus 90 ~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 90 TVFQSYA--LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEecCcc--cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999864 223334555543211 1111 346788899999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||||++||+..+..+.+.|++ .+.|+|+||||.+++..+||++++|++|++. ..|+++++.
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~i~ 233 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE-QDGTPREIY 233 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999988887764 3679999999999999999999999999997 568877764
No 50
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9e-48 Score=373.26 Aligned_cols=252 Identities=24% Similarity=0.358 Sum_probs=202.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCC-CcceeeceEEEeCC
Q 024529 4 FIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGG-PILFKNLNFGIDLD 82 (266)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~G 82 (266)
|+.|+.+-.......+....+.+|+.++....++.+........ ..-...++++|++|+|+.+ +.+|+|+||+|++|
T Consensus 422 f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~--~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~G 499 (709)
T COG2274 422 FISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHL--PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPG 499 (709)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc--cccCceEEEEEEEEEeCCCCcchhhceeEEeCCC
Confidence 45555555555555666666777776665544432211111111 1113459999999999755 46999999999999
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcH
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE 151 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (266)
|++||+|+||||||||+|+|+|+++|++|+|.+++. ..+||++|++. -+..+..+++....+..+.
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~---Lf~gSI~eNi~l~~p~~~~ 576 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF---LFSGSIRENIALGNPEATD 576 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch---hhcCcHHHHHhcCCCCCCH
Confidence 999999999999999999999999999999999884 46999999874 2455677777766666777
Q ss_pred HHHHHHHHhcCCCcccccCC----------CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 024529 152 QKLRAHLGSFGVTGNLALQP----------MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 221 (266)
Q Consensus 152 ~~~~~~l~~~~l~~~~~~~~----------~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 221 (266)
+++.+++...|.++.....| ...||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|.+..
T Consensus 577 e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 577 EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 88888888888876555333 46799999999999999999999999999999999999999999998875
Q ss_pred --CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 222 --GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 222 --~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
.|+|+|||++..+. .||+|++|++|+++ ..|+.+++.+.
T Consensus 657 ~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv-~~gs~~ell~~ 697 (709)
T COG2274 657 QGRTVIIIAHRLSTIR-SADRIIVLDQGKIV-EQGSHEELLAQ 697 (709)
T ss_pred cCCeEEEEEccchHhh-hccEEEEccCCcee-ccCCHHHHHHh
Confidence 89999999999997 59999999999997 68999988654
No 51
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=340.36 Aligned_cols=204 Identities=24% Similarity=0.387 Sum_probs=168.5
Q ss_pred cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
.|+++||++.|++. +.+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38999999999642 36999999999999999999999999999999999999999999988763
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..++|++|++...+ +..+..+++.. ...+.. .+++.++++.+|+.. ...++++.+||||||||++|||||+
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 24899999863221 22344444421 111122 245778999999962 3567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.+|++|||||||++||+.++.++.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE-LQGTPREVF 233 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999998887643 569999999999999999999999999997 678887764
No 52
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-47 Score=342.78 Aligned_cols=204 Identities=24% Similarity=0.295 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
+|+++|+++.|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999643 25899999999999999999999999999999999999999999987531
Q ss_pred -----------------------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCccccc
Q 024529 119 -----------------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLAL 169 (266)
Q Consensus 119 -----------------------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~ 169 (266)
..+||++|++...+ +..+..+++... ..+. ..+++.++++.+|+.....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 24899999852222 223444444211 1112 23467889999999644567
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 170 ~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
+++.+||||||||++|||||+.+|++|||||||++||+.++..+++.|.+ .+.|||+||||++++..+||++++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 89999999999999999999999999999999999999999988887764 367999999999999999999999999
Q ss_pred CeEEecCCChhHHH
Q 024529 247 GKATPFHGTFHDYK 260 (266)
Q Consensus 247 G~i~~~~g~~~~~~ 260 (266)
|+++ ..|+++++.
T Consensus 241 G~i~-~~g~~~~~~ 253 (305)
T PRK13651 241 GKII-KDGDTYDIL 253 (305)
T ss_pred CEEE-EECCHHHHh
Confidence 9996 678877754
No 53
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.5e-47 Score=334.77 Aligned_cols=205 Identities=21% Similarity=0.304 Sum_probs=167.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------- 119 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------- 119 (266)
++|+++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYG-PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcC-CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4799999999995 4579999999999999999999999999999999999999999999877642
Q ss_pred ------eEEEEeccccCCCCCCCcHHHHHHH---hCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529 120 ------RIAVFSQHHVDGLDLSSNPLLYMMR---CFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 120 ------~i~~~~q~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA 186 (266)
.++|++|++...+....+...++.. ... ......+.++++.+++.....++++.+|||||+||++||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 3899999863222222222222111 111 112345678899999964345688999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.+...+.+.+++ .+.|||+||||.+++..+||++++|++|+++ ..|+.+++.
T Consensus 164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 240 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL 240 (258)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999998887754 2569999999999999999999999999996 567777654
No 54
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=343.73 Aligned_cols=209 Identities=22% Similarity=0.301 Sum_probs=170.8
Q ss_pred CCCCCcEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------
Q 024529 50 RPGPPIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 118 (266)
Q Consensus 50 ~~~~~~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------- 118 (266)
.++.++|+++|+++.|++. ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|++++.
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 3455789999999999642 35899999999999999999999999999999999999999999987641
Q ss_pred --------------------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCC
Q 024529 119 --------------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPM 172 (266)
Q Consensus 119 --------------------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~ 172 (266)
..++|++|++...+ +..+..+++... ..... ..++.++++.+++.....++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcc-ccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 24899999863222 223444443211 11111 2456788999999644567888
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 173 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 173 ~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
.+||||||||++|||||+.+|++|||||||++||+.++..+++.|.+. +.|||+||||++++..+||++++|++|++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999998887643 57999999999999889999999999999
Q ss_pred EecCCChhHHH
Q 024529 250 TPFHGTFHDYK 260 (266)
Q Consensus 250 ~~~~g~~~~~~ 260 (266)
+ ..|+.+++.
T Consensus 255 ~-~~g~~~~~~ 264 (320)
T PRK13631 255 L-KTGTPYEIF 264 (320)
T ss_pred E-EeCCHHHHh
Confidence 7 678887653
No 55
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-48 Score=328.46 Aligned_cols=196 Identities=28% Similarity=0.374 Sum_probs=161.9
Q ss_pred EEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEec
Q 024529 56 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q 126 (266)
|+++|+++.|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4789999999542 56999999999999999999999999999999999999999999998774 35899999
Q ss_pred cccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus 81 ~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDAL--LPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-FENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred cccc--ccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 8632 222334433321 11111 2356788999999974 4567889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEe--CCeEEecCCC
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATPFHGT 255 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~--~G~i~~~~g~ 255 (266)
||++||+.++..+.+.+.+. +.|||+||||++++..+||++++|+ +|+++ ..++
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~-~~~~ 217 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV-AEVE 217 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE-EEEE
Confidence 99999999999998888643 5699999999999999999999999 79986 3444
No 56
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-48 Score=346.13 Aligned_cols=207 Identities=21% Similarity=0.312 Sum_probs=170.8
Q ss_pred CCcEEEEeeEEEcCC---------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----
Q 024529 53 PPIISFSDASFGYPG---------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~---------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----- 118 (266)
+++|+++||++.|+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 357999999999952 246899999999999999999999999999999999999999999988763
Q ss_pred ---------eeEEEEeccccCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 182 (266)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR 182 (266)
..++|++|++...++...+....+. ..... ...+++.++++.+|+.+...++++++|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2599999997433443333332221 11111 1235678899999996545678899999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
|+|||||+.+|++||+||||++||+.++.++++.|.+ .+.|||+||||++.+..+||++++|.+|+++ ..|+.++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence 9999999999999999999999999999998887764 3679999999999999999999999999997 4677666
Q ss_pred HH
Q 024529 259 YK 260 (266)
Q Consensus 259 ~~ 260 (266)
+.
T Consensus 242 ~~ 243 (327)
T PRK11308 242 IF 243 (327)
T ss_pred Hh
Confidence 53
No 57
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.7e-48 Score=328.68 Aligned_cols=190 Identities=29% Similarity=0.403 Sum_probs=157.4
Q ss_pred EEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529 56 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (266)
Q Consensus 56 l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 118 (266)
|+++|++++|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 57999999999999999999999999999999999999999999987652
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
..++|++|++.. ....+..+++.. ..... ..+++.++++.+++.. ..++++.+||||||||++|||||+.
T Consensus 81 ~~~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFNL--LPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-RLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeecccc--CCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHcc
Confidence 248999998632 222234433321 11111 2346788999999974 4578889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
+|++|||||||++||+.++..+.+.+.+. +.|||+||||++++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999988887653 569999999999997 9999999999974
No 58
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1e-47 Score=326.60 Aligned_cols=191 Identities=28% Similarity=0.436 Sum_probs=159.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------ee
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~ 120 (266)
||+++|+++.|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 5889999999953457999999999999999999999999999999999999999999988763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++.. ....+..+++... ... ...+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus 81 i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQDFRL--LPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecChhh--ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 8999998632 2223344333211 111 12356788999999974 4567889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
+|||||||++||+.++..+.+.++++ +.|||+||||++++..+||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999998888653 5799999999999999999999999885
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-47 Score=327.78 Aligned_cols=200 Identities=23% Similarity=0.349 Sum_probs=165.5
Q ss_pred EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEE
Q 024529 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVF 124 (266)
Q Consensus 56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~ 124 (266)
|+++|+++.|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5789999999642 569999999999999999999999999999999999999999999987642 48999
Q ss_pred eccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 125 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
+|++.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||
T Consensus 81 ~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDAL--FDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCCc--cccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998532 222334433321 11111 1345778899999964 45678899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 199 DEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||||++||+.+...+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~ 219 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR-CIGSPQEL 219 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE-ecCCHHHc
Confidence 9999999999999998888764 369999999999999999999999999996 56777653
No 60
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-47 Score=349.54 Aligned_cols=201 Identities=23% Similarity=0.327 Sum_probs=168.8
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
+|+++|++++|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 589999999995 456899999999999999999999999999999999999999999998764 2499999
Q ss_pred ccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++.. ....+..+++... .... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 82 QSYAL--YPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred CCccc--CCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 98642 2223444444221 1111 1346788999999974 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||++||+.++..+.+.|++. +.|+|+||||++++..+||++++|++|++. ..|+++++.
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~-~~g~~~~i~ 222 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELY 222 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999888777543 679999999999999999999999999996 568877764
No 61
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.6e-47 Score=335.91 Aligned_cols=205 Identities=21% Similarity=0.326 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCC--------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------
Q 024529 55 IISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------- 118 (266)
+|+++||++.|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6899999999953 356899999999999999999999999999999999999999999988763
Q ss_pred ------eeEEEEeccccCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529 119 ------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++...+....+..+++. ..... ...+++.++++.+++.....++++.+|||||+||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2489999985222222233433321 11111 1235678899999996445678899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLL 239 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHc
Confidence 99999999999999999999999998888877643 579999999999999999999999999996 568877664
No 62
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-47 Score=329.01 Aligned_cols=202 Identities=24% Similarity=0.347 Sum_probs=167.3
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
||+++|++++|++. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 48899999999543 16999999999999999999999999999999999999999999988753
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
..++|++|++.. ....+..+++... .... ..+.+.++++.+++.+ ..++++.+|||||+||++|||||+.
T Consensus 81 ~~~i~~~~q~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQHFNL--LSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-KADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccCccc--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhcChhhCCHHHHHHHHHHHHHhc
Confidence 248999998632 2223444433211 1111 1345778899999974 4678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|++|||||||++||+.++..+.+.+.+. +.|||++||+.+++..+||++++|++|+++ ..|+.+++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV-EEGTVEEVF 229 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999999988887643 569999999999999999999999999996 578877764
No 63
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-47 Score=339.11 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=168.1
Q ss_pred cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
+|+++|+++.|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58899999999632 35899999999999999999999999999999999999999999998774
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
..++|++|++...+. ..+..+++.. ..... ..+++.++++.+++.....++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 148999998521121 2344444321 11111 2345788899999963456789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+.+|++|||||||+|||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIF 233 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999888887654 469999999999999999999999999996 578877654
No 64
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.9e-47 Score=347.96 Aligned_cols=202 Identities=21% Similarity=0.301 Sum_probs=170.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc--eEEEEcCe---------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS--GTVFRSAK---------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~~~---------~~i~~ 123 (266)
.|+++|++++|+ +..+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.+++. ..++|
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 489999999995 4568999999999999999999999999999999999999999 99998774 35999
Q ss_pred EeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
++|++.. ....++.+++... .... ...++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 84 vfQ~~~l--~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 84 LFQNYAL--FPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-AAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EECCccc--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998642 2333455444321 1112 2346788999999974 5678999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhh----c-CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 198 LDEPSNHLDLDAVEALIQGLVL----F-QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~----~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||||++||+..+.++.+.|.+ . +.|+|+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~-~~g~~~~~~~ 228 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA-AHGEPQALYD 228 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999988887754 2 569999999999999999999999999997 5788887643
No 65
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.6e-47 Score=336.57 Aligned_cols=202 Identities=24% Similarity=0.378 Sum_probs=167.8
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------e
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V 119 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~ 119 (266)
++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5799999999995 456899999999999999999999999999999999999999999988763 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
.++|++|++.. ....+..+++.. ...... ...+.++++.+++.+ ..++++.+||||||||++|||||+.+
T Consensus 85 ~i~~v~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 85 RMSMLFQSGAL--FTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-AAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred cEEEEeccccc--CCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 48999998532 222344444321 111111 235667899999974 56788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999888877653 569999999999999999999999999996 578877664
No 66
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2e-47 Score=332.64 Aligned_cols=201 Identities=25% Similarity=0.452 Sum_probs=168.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
++|+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++...++|++|++.....
T Consensus 3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 4799999999995 456999999999999999999999999999999999999999999999887789999998632222
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l 213 (266)
+..+...++. .......+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+
T Consensus 82 l~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 159 (251)
T PRK09544 82 LPLTVNRFLR-LRPGTKKEDILPALKRVQAGH-LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159 (251)
T ss_pred cChhHHHHHh-ccccccHHHHHHHHHHcCChH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 2223333322 122334567888999999974 45788999999999999999999999999999999999999999998
Q ss_pred HHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 214 IQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 214 ~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
.+.|.+. +.|||+||||++++..+||++++|++ +++ ..|+.+++
T Consensus 160 ~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~ 207 (251)
T PRK09544 160 YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVV 207 (251)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHH
Confidence 8877543 67999999999999999999999965 665 56777665
No 67
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-47 Score=331.46 Aligned_cols=202 Identities=22% Similarity=0.332 Sum_probs=167.7
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
.+|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 2 NEIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred ceEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 3589999999995 456899999999999999999999999999999999999999999998763 2489
Q ss_pred EEeccccCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
|++|++.. + ..+..+++... .......++.++++.+++.....++++.+|||||+||++|||||+.+|++|||||
T Consensus 81 ~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 81 MVFQQPHL-F--EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred EEecCchh-c--hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99998632 1 12444443211 1122345678889999996445678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 220 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV-EYAKTYDFF 220 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE-EeCCHHHHh
Confidence 99999999999988877653 679999999999999999999999999996 456666553
No 68
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.4e-47 Score=336.54 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=167.7
Q ss_pred CcEEEEeeEEEcCC--------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------
Q 024529 54 PIISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------- 118 (266)
++|+++||+++|++ ...+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999952 246999999999999999999999999999999999999999999988763
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHH---HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
..++|++|++...+....+...++. ...... ..+++.++++.+++.....++++.+|||||+||++|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 2489999986322222222222221 111111 13457788999999544556788999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+.+|+||||||||++||+.++..+.+.|.+. +.|||+|||+++++..+||++++|++|+++ ..|+++++.
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 238 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVL 238 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHh
Confidence 999999999999999999999999988877653 569999999999999999999999999996 678777664
No 69
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.3e-47 Score=328.96 Aligned_cols=197 Identities=22% Similarity=0.342 Sum_probs=162.7
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-----CCCceEEEEcCe------------
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAK------------ 118 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~~~------------ 118 (266)
|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+++.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999995 457999999999999999999999999999999999999 999999988763
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCcccccCC--CCCCChHHHHHHHHHHH
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTGNLALQP--MYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqRv~lAra 188 (266)
..++|++|++.. . ..+..+++... .... ..+++.++++.+++.+.. +++ +.+||||||||++||||
T Consensus 80 ~~~i~~~~q~~~~--~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 80 RRRVGMVFQKPNP--F-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-KDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HhhEEEEecCchh--c-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-hccCCcccCCHHHHHHHHHHHH
Confidence 148999998632 2 33444443211 1111 235677889999997543 344 59999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
|+.+|++|||||||++||+.++..+.+.|.+.. .|||++|||++++..+||++++|++|+++ ..|+.++
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 226 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV-EFGPTEQ 226 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE-EecCccc
Confidence 999999999999999999999999999887652 58999999999999999999999999996 5676543
No 70
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.9e-48 Score=328.50 Aligned_cols=191 Identities=29% Similarity=0.418 Sum_probs=158.7
Q ss_pred EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEeccccC
Q 024529 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVD 130 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q~~~~ 130 (266)
+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++..
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 3689999995 456899999999999999999999999999999999999999999999873 459999998642
Q ss_pred CCCCCCcHHHHHHHhCC----------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 131 GLDLSSNPLLYMMRCFP----------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 131 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
...+..+..+++..... ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-LADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11122345554432110 012346788999999974 5678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 201 PSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|.+
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 99999999999998888654 46999999999999999999999988643
No 71
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.4e-47 Score=324.19 Aligned_cols=192 Identities=22% Similarity=0.351 Sum_probs=160.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q 126 (266)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 478999999954 57899999999999999999999999999999999999999999998763 24899999
Q ss_pred cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++.. ....+..+++... .... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 80 NYAL--YPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred Chhh--ccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8632 2223444433211 1111 1345677899999974 4678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATP 251 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 251 (266)
||+|||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++.
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 99999999999998887653 5799999999999999999999999999863
No 72
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2e-47 Score=325.70 Aligned_cols=193 Identities=22% Similarity=0.318 Sum_probs=161.7
Q ss_pred cEEEEeeEEEcCCCC---cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeE
Q 024529 55 IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 121 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i 121 (266)
+|+++|+++.|++.. .+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 478999999996431 6999999999999999999999999999999999999999999998763 258
Q ss_pred EEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++. +....+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 81 GFVSDSTG--LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-LLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EEecCCcc--cCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 99999863 2222344443321 11111 2346778999999964 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 9999999999999999998888654 569999999999999999999999999986
No 73
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.1e-47 Score=346.96 Aligned_cols=201 Identities=25% Similarity=0.302 Sum_probs=169.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
+|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++. ..++|++
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999995 456999999999999999999999999999999999999999999998774 2599999
Q ss_pred ccccCCCCCCCcHHHHHHHhC------CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 126 QHHVDGLDLSSNPLLYMMRCF------PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
|++.. ....+..+++.... ... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 81 Q~~~l--~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 81 QHYAL--FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-LADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cCccc--CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 98632 22334444443211 011 1356788999999974 56789999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||++||+.++..+.+.|++. +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~-~~g~~~~i~ 225 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE-QAGTPDQVW 225 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999998888877643 569999999999999999999999999997 568887764
No 74
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.7e-47 Score=332.94 Aligned_cols=203 Identities=22% Similarity=0.311 Sum_probs=169.0
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 118 (266)
.+|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4699999999995 456999999999999999999999999999999999999999999987763
Q ss_pred ---------eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 182 (266)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR 182 (266)
..++|++|++.. ....+..+++.. ..... ..+++.++++.+++.....++++.+|||||+||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l--~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNL--WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cchHHHHHhhceEEEecCccc--CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 248999998632 222344444321 11111 234678899999997544467889999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
++|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 239 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQL 239 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 99999999999999999999999999999988877653 579999999999999999999999999997 67887776
Q ss_pred H
Q 024529 260 K 260 (266)
Q Consensus 260 ~ 260 (266)
.
T Consensus 240 ~ 240 (257)
T PRK10619 240 F 240 (257)
T ss_pred h
Confidence 4
No 75
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.5e-46 Score=360.77 Aligned_cols=210 Identities=29% Similarity=0.492 Sum_probs=178.0
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
..++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+.+...++|++|++. .
T Consensus 321 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~ 398 (556)
T PRK11819 321 GDKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD-A 398 (556)
T ss_pred CCeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchh-h
Confidence 356899999999995 45699999999999999999999999999999999999999999999866668999999851 2
Q ss_pred CCCCCcHHHHHHHhC--C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529 132 LDLSSNPLLYMMRCF--P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207 (266)
Q Consensus 132 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~ 207 (266)
+....++.+++.... . ......+..+++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 223345555443211 1 112344567899999964445788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC-CeEEecCCChhHHHHHH
Q 024529 208 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPFHGTFHDYKKML 263 (266)
Q Consensus 208 ~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~ 263 (266)
.++..+.+.|.++.+|||+||||++++..+||++++|++ |++..+.|++++|.+..
T Consensus 479 ~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 479 ETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 999999999998877999999999999999999999986 88877899999986654
No 76
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-47 Score=338.23 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=168.0
Q ss_pred cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
.|+++||++.|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 48999999999532 35999999999999999999999999999999999999999999998763
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
..++|++|++...+. ..+..+++... .... ..+++.++++.+|+.....++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccc-hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 148999998632221 22444443211 1111 2345778899999963456788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+.+|++|||||||++||+.++..+.+.+.+. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 234 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV-SQTSPKELF 234 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999988887653 569999999999999999999999999997 578877754
No 77
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.3e-47 Score=325.53 Aligned_cols=196 Identities=23% Similarity=0.375 Sum_probs=159.2
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
+|+++|+++.|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999543 26899999999999999999999999999999999999999999988663
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHH---hCC-CCcH---HH-HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPE---QK-LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~---~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
..++|++|++...+....+..+++.. ... .... .. +.++++.+++.....++++.+|||||+||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 25899999862122222334333321 111 1111 12 246788999853456788899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 9999999999999999999999998888653 579999999999999999999999999986
No 78
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.9e-47 Score=325.00 Aligned_cols=193 Identities=29% Similarity=0.429 Sum_probs=160.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------ee
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~ 120 (266)
||+++|+++.|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 4889999999943457999999999999999999999999999999999999999999988763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++.. ....+..+++... ..... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 81 i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQDHHL--LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecCccc--cccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 8999998632 2233444443211 11111 234678899999974 4578889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999888877653 579999999999999999999999999985
No 79
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-47 Score=370.02 Aligned_cols=203 Identities=26% Similarity=0.440 Sum_probs=173.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (266)
||+++||+++|+ ++.+|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|.... ..
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~~- 77 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA-LP- 77 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC-CC-
Confidence 589999999995 567999999999999999999999999999999999999999999999887789999986421 11
Q ss_pred CCcHHHHHH-----------------------------Hh---CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 024529 135 SSNPLLYMM-----------------------------RC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 181 (266)
Q Consensus 135 ~~~~~~~~~-----------------------------~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 181 (266)
.+...++. .. .. .....++.++++.+|+.....++++.+|||||||
T Consensus 78 -~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 78 -QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred -CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 11111000 00 00 0123567889999999644567899999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||+||+||+.+|+||||||||||||+.++.++.+.|.++++|||+||||++++..+||++++|++|++..|.|+++.|..
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999888999999865
No 80
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.6e-47 Score=331.28 Aligned_cols=205 Identities=22% Similarity=0.319 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------- 119 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------- 119 (266)
++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4799999999995 4568999999999999999999999999999999999999999999886521
Q ss_pred ------eEEEEeccccCCCCCCCcHHHHHH----HhC-C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529 120 ------RIAVFSQHHVDGLDLSSNPLLYMM----RCF-P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 120 ------~i~~~~q~~~~~~~~~~~~~~~~~----~~~-~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA 186 (266)
.++|++|++...+....+....+. ... . ....+.+.++++.+++.....++++..|||||+||++||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 379999986322222222222221 111 0 112456788899999964456788999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.+.+ .+.|||+|||+.+++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~ 237 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL 237 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999998887754 2579999999999999999999999999996 567766654
No 81
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3e-47 Score=327.58 Aligned_cols=200 Identities=24% Similarity=0.386 Sum_probs=165.2
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~ 123 (266)
|+++|+++.|+ ++.+|+|+||++.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999995 456999999999999999999999999999999999999999999988763 24899
Q ss_pred EeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
++|++.. ....+..+++... .... ...++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||
T Consensus 80 ~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 80 LPQEASI--FRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred ecCCccc--cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998632 2223444333211 1111 1345678899999974 5678889999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 198 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||++||+.+++.+.+.+++. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 221 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEIA 221 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHhh
Confidence 99999999999999988877643 569999999999999999999999999996 578877653
No 82
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-47 Score=335.25 Aligned_cols=202 Identities=28% Similarity=0.382 Sum_probs=165.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-------------eE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------RI 121 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------~i 121 (266)
||+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 589999999995 4569999999999999999999999999999999999999999999887632 48
Q ss_pred EEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++...+. ..+...++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-FRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 999998531111 1122222211 111111 234677899999964 45788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL-THGAPGEVF 224 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999988887654 569999999999999999999999999996 578877653
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.6e-47 Score=327.49 Aligned_cols=201 Identities=23% Similarity=0.394 Sum_probs=166.2
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~ 124 (266)
+|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 478999999995 457999999999999999999999999999999999999999999988764 248999
Q ss_pred eccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 125 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
+|++.. ....+...++.. ..... ..+.+.++++.+++.. ..++++.+|||||+||++|||||+.+|++|||
T Consensus 80 ~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 80 FQQPTL--DLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-RADDKVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred CCCCCC--cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998632 223344443321 11111 2345678899999974 45788899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 199 DEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||||++||+.++..+.+.|.+. +.|||++|||++++.. ||++++|++|+++ ..|+.+++.+
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~ 221 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVL-ADGAAAELRG 221 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEE-EeCCHHHHHH
Confidence 9999999999999998887653 5699999999999975 9999999999996 5688776654
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-47 Score=335.79 Aligned_cols=205 Identities=27% Similarity=0.422 Sum_probs=170.4
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------ee
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~ 120 (266)
++|+++|+++.|++++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 57999999999964456999999999999999999999999999999999999999999998763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++...+ ...+..+++... ..+.. .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus 84 ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 84 VGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred EEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863211 223444444211 11111 345778899999974 5678999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ +.|+++++..
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999888777543 579999999999999999999999999996 6788877643
No 85
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-47 Score=322.84 Aligned_cols=191 Identities=20% Similarity=0.390 Sum_probs=160.4
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------eeEEEEeccc
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH 128 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~~ 128 (266)
|+++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 47899999995 456999999999999999999999999999999999999999999998874 3589999986
Q ss_pred cCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 129 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
.. ....+..+++.. ..... ..+.+.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||
T Consensus 80 ~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 80 GL--YPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred cC--CcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 32 222234433321 11111 2346778899999974 456788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 203 NHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
++||+.++..+.+.+++. +.|||++|||.+++..+||++++|++|+++
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 999999999998888654 569999999999999999999999999986
No 86
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.3e-47 Score=328.09 Aligned_cols=202 Identities=21% Similarity=0.363 Sum_probs=168.7
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3689999999995 456999999999999999999999999999999999999999999998763 148
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCC--------------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFP--------------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
+|++|++.. ....+..+++..... .....++.++++.+++.+ ..++++.+|||||+||++|||
T Consensus 80 ~~~~q~~~~--~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 80 GRKFQKPTV--FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eEecccccc--CCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence 999998532 222344433321100 012346788899999974 557889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence 999999999999999999999999999888764 469999999999999999999999999996 678887764
No 87
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.6e-47 Score=328.87 Aligned_cols=201 Identities=24% Similarity=0.341 Sum_probs=167.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 121 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i 121 (266)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 478999999995 456999999999999999999999999999999999999999999988763 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
+|++|++.. ....+..+++... .... ..+.+.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus 80 ~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 80 GMVFQQFYL--FPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EEEeccccc--CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998532 2223444433211 1111 2345678899999964 4578889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHh
Confidence 99999999999999999988887653 579999999999999999999999999996 678887764
No 88
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-47 Score=328.73 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=166.5
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 124 (266)
++++|++++|++...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999954256899999999999999999999999999999999999999999988763 258999
Q ss_pred eccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 125 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
+|++.. ....+..+++.. ..... ..+++.++++.+++.. ...++++.+|||||+||++|||||+.+|++||
T Consensus 81 ~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 81 IQQIGL--FPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccCccc--cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998632 222344444321 11111 2345778899999974 24678889999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 198 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||++||+.++..+.+.|.+. +.|||++||+.+++..+||++++|++|+++ ..|+.+++.
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 224 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV-QVGTPDEIL 224 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence 99999999999999988877653 569999999999999999999999999996 567777663
No 89
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.2e-47 Score=330.22 Aligned_cols=201 Identities=22% Similarity=0.358 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------- 118 (266)
+|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 699999999995 456999999999999999999999999999999999999999999987642
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra 188 (266)
..++|++|++.. ....+..+++.. ..... ..+.+.++++.+++.. ..++++.+|||||+||++||||
T Consensus 82 ~~~~~i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 82 QLRQHVGFVFQNFNL--FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HhhhhEEEEecCccc--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHHHH
Confidence 248999998632 222344443321 11111 1345678899999974 4578889999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||.+++..+||++++|++|+++ ..|+.+++.
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999988877643 579999999999999999999999999996 568877764
No 90
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.9e-47 Score=340.15 Aligned_cols=195 Identities=23% Similarity=0.328 Sum_probs=162.2
Q ss_pred EEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEeccccCCC
Q 024529 63 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFSQHHVDGL 132 (266)
Q Consensus 63 ~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~q~~~~~~ 132 (266)
++|+ ++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++|++|++..
T Consensus 1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~-- 77 (302)
T TIGR01188 1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASV-- 77 (302)
T ss_pred CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCC--
Confidence 3573 456999999999999999999999999999999999999999999998774 248999998642
Q ss_pred CCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529 133 DLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206 (266)
Q Consensus 133 ~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD 206 (266)
....+..+++.. ...+. ..+++.++++.+++.+ ..++++.+||||||||++||+||+.+|++|||||||+|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 222344443321 11122 1345788999999974 5678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 207 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 207 ~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
+.++..+++.++++ +.|||++||+++++..+||++++|++|+++ +.|+.+++.+.
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l~~~ 214 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHh
Confidence 99999998887654 579999999999999999999999999997 67888887543
No 91
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.4e-47 Score=326.00 Aligned_cols=200 Identities=23% Similarity=0.336 Sum_probs=163.8
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~ 123 (266)
|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 57899999995 456999999999999999999999999999999999999999999988763 24899
Q ss_pred EeccccCCCCCCCcHHHHHHHh---CC-CCcHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRC---FP-GVPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
++|++.. ....+..+++... .. ......+.++++.+ ++. ...++++.+||||||||++|||||+.+|++|||
T Consensus 80 ~~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 80 VPEGRRI--FPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred ecccccc--CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9998632 2223444443211 11 11233456677777 464 345788899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 199 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||++||+.++..+++.|.+. +.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 220 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV-LEGTAAELL 220 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE-EeCCHHHHh
Confidence 9999999999999998888654 569999999999999999999999999996 568877654
No 92
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-47 Score=323.28 Aligned_cols=190 Identities=21% Similarity=0.317 Sum_probs=159.6
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEe
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~ 125 (266)
|+++|+++.|+ +..+|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999995 456999999999999 99999999999999999999999999999998763 3589999
Q ss_pred ccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus 79 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 79 QEFGV--YPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred CCCcc--cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 98642 222344433321 11111 2346778899999974 456888999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 200 EPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999888765 479999999999999999999999999986
No 93
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.9e-46 Score=358.65 Aligned_cols=210 Identities=29% Similarity=0.484 Sum_probs=177.8
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
+.++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|++. .
T Consensus 319 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~ 396 (552)
T TIGR03719 319 GDKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-A 396 (552)
T ss_pred CCeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-c
Confidence 356899999999995 45799999999999999999999999999999999999999999999866668999999852 1
Q ss_pred CCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529 132 LDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207 (266)
Q Consensus 132 ~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~ 207 (266)
+....+..+++..... . ....++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 2233455555432211 1 11334667899999964445788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC-CeEEecCCChhHHHHHH
Q 024529 208 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPFHGTFHDYKKML 263 (266)
Q Consensus 208 ~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~ 263 (266)
.++..+.+.|.++++|||+||||++++..+||++++|++ |++..+.|++++|.+..
T Consensus 477 ~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~ 533 (552)
T TIGR03719 477 ETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDK 533 (552)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHH
Confidence 999999999999878999999999999999999999987 58877899999886543
No 94
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-47 Score=342.58 Aligned_cols=206 Identities=18% Similarity=0.250 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC----CCceEEEEcCe--------
Q 024529 54 PIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAK-------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~~~-------- 118 (266)
++|+++||++.|+. ...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999942 2468999999999999999999999999999999999986 58999998763
Q ss_pred -------eeEEEEeccccCCCCCCCcHHHHHHH---h--CC-----C--CcHHHHHHHHHhcCCCcc--cccCCCCCCCh
Q 024529 119 -------VRIAVFSQHHVDGLDLSSNPLLYMMR---C--FP-----G--VPEQKLRAHLGSFGVTGN--LALQPMYTLSG 177 (266)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~~~~---~--~~-----~--~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg 177 (266)
..++|++|++...++...+....+.. . .. . ...+++.++|+.+++.+. ..++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 14999999875333333333332221 0 10 0 123467889999999742 34678899999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecC
Q 024529 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFH 253 (266)
Q Consensus 178 GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~ 253 (266)
||+|||+|||||+.+|++|||||||++||+.++.++++.|++ .+.|||+||||++++..+||++++|.+|+++ ..
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv-e~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV-ET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EE
Confidence 999999999999999999999999999999999998888765 3579999999999999999999999999997 56
Q ss_pred CChhHHH
Q 024529 254 GTFHDYK 260 (266)
Q Consensus 254 g~~~~~~ 260 (266)
|+.+++.
T Consensus 241 g~~~~i~ 247 (330)
T PRK15093 241 APSKELV 247 (330)
T ss_pred CCHHHHH
Confidence 7776653
No 95
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-47 Score=345.13 Aligned_cols=204 Identities=23% Similarity=0.320 Sum_probs=171.1
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------eEEE
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAV 123 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~i~~ 123 (266)
.++|+++|+++.|+ +..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++.. .++|
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 56799999999995 4568999999999999999999999999999999999999999999988752 5999
Q ss_pred EeccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
++|++.. ....+..+++.... ... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 96 vfQ~~~l--fp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 96 MFQSYAL--FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998642 23334555443211 111 2356788999999974 5678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 198 LDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||||++||+..+..+.+.+. +.+.|+|+||||.+++..+||++++|++|+++ ..|+++++..
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~~~~ 239 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV-QIGEPEEIYE 239 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE-EEcCHHHHHh
Confidence 999999999999988776554 34679999999999999999999999999997 5688877643
No 96
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.1e-47 Score=322.24 Aligned_cols=191 Identities=28% Similarity=0.415 Sum_probs=158.6
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------eeE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI 121 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~i 121 (266)
|+++|+++.|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964456999999999999999999999999999999999999999999988763 148
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++.. ....+..+++... .... ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++
T Consensus 81 ~~v~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQDFRL--LPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-KHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecCchh--ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 999998632 2223344433211 1111 2345778899999974 45678899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
|||||||++||+.++..+.+.+.+. +.|||+||||.+++..+||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999998887654 57999999999999999999999999874
No 97
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.8e-47 Score=363.17 Aligned_cols=205 Identities=23% Similarity=0.389 Sum_probs=174.0
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (266)
+++|+++||++.|++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+...++|++|++...
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~- 82 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD- 82 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC-
Confidence 4589999999999524679999999999999999999999999999999999999999999987777899999986321
Q ss_pred CCCCcHHHHHHHh-----------------CC-C------------------------CcHHHHHHHHHhcCCCcccccC
Q 024529 133 DLSSNPLLYMMRC-----------------FP-G------------------------VPEQKLRAHLGSFGVTGNLALQ 170 (266)
Q Consensus 133 ~~~~~~~~~~~~~-----------------~~-~------------------------~~~~~~~~~l~~~~l~~~~~~~ 170 (266)
...++.+++... .. . ....++.++++.+++. . .++
T Consensus 83 -~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~ 159 (556)
T PRK11819 83 -PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDA 159 (556)
T ss_pred -CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccC
Confidence 122332222100 00 0 0134577788999995 3 578
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 171 ~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
++.+|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++++|||+||||++++..+||+|++|++|+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 89999999999999999999999999999999999999999999999988889999999999999999999999999987
Q ss_pred ecCCChhHHHH
Q 024529 251 PFHGTFHDYKK 261 (266)
Q Consensus 251 ~~~g~~~~~~~ 261 (266)
.+.|++++|.+
T Consensus 240 ~~~g~~~~~~~ 250 (556)
T PRK11819 240 PWEGNYSSWLE 250 (556)
T ss_pred EecCCHHHHHH
Confidence 68899998754
No 98
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-47 Score=362.17 Aligned_cols=204 Identities=25% Similarity=0.437 Sum_probs=172.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (266)
||+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++...++|++|++....
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~-- 77 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE-- 77 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC--
Confidence 589999999995 45799999999999999999999999999999999999999999999987778999999863221
Q ss_pred CCcHHHHHHHh----------------CC----------------------CCcHHHHHHHHHhcCCCcccccCCCCCCC
Q 024529 135 SSNPLLYMMRC----------------FP----------------------GVPEQKLRAHLGSFGVTGNLALQPMYTLS 176 (266)
Q Consensus 135 ~~~~~~~~~~~----------------~~----------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 176 (266)
..+..+++... .. .....++.++++.+|+.+...++++.+||
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 12222221100 00 01134577889999997544457889999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 256 (266)
Q Consensus 177 gGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 256 (266)
|||||||+|||||+.+|++|||||||++||+.++.++.+.|.+.+.|||+||||++++..+||++++|++|+++.+.|++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 237 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY 237 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999996578999
Q ss_pred hHHHH
Q 024529 257 HDYKK 261 (266)
Q Consensus 257 ~~~~~ 261 (266)
++|.+
T Consensus 238 ~~~~~ 242 (530)
T PRK15064 238 DEYMT 242 (530)
T ss_pred HHHHH
Confidence 98864
No 99
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-47 Score=329.67 Aligned_cols=192 Identities=26% Similarity=0.356 Sum_probs=160.8
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEeccc
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHH 128 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q~~ 128 (266)
||+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|++|++
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 589999999995 4569999999999999999999999999999999999999999999987642 489999985
Q ss_pred cCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 129 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||
T Consensus 80 ~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 80 GL--LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred cc--CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 32 222344444321 11111 1345788999999974 456888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEe--CCeEE
Q 024529 203 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKAT 250 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~--~G~i~ 250 (266)
++||+.++..+.+.|.+. +.|||+||||++++..+||++++|+ +|+++
T Consensus 157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~ 210 (255)
T PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEE
Confidence 999999999998888653 5699999999999999999999998 48885
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-47 Score=329.00 Aligned_cols=202 Identities=22% Similarity=0.391 Sum_probs=167.2
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------eE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------RI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i 121 (266)
++|+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4799999999995 4579999999999999999999999999999999999999999999987641 37
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh-------------C-----CC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC-------------F-----PG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~-------------~-----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 180 (266)
+|++|++.. ....+..+++... . .. ...+.+.++++.+++.+ ..++++.+||||||
T Consensus 83 ~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQHVRL--FREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-HANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccCccc--CCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-hhhCChhhCCHHHH
Confidence 888998632 2223444333211 0 00 01235677889999964 56788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 256 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 256 (266)
||++|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ +.|+.
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~ 238 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGTP 238 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCCH
Confidence 9999999999999999999999999999999988877643 569999999999999999999999999996 67887
Q ss_pred hHHH
Q 024529 257 HDYK 260 (266)
Q Consensus 257 ~~~~ 260 (266)
+++.
T Consensus 239 ~~~~ 242 (255)
T PRK11300 239 EEIR 242 (255)
T ss_pred HHHh
Confidence 7764
No 101
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-47 Score=333.18 Aligned_cols=204 Identities=28% Similarity=0.445 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
.+++++|++++|++...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 36899999999964456899999999999999999999999999999999999999999998764 1489
Q ss_pred EEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++|++...+ ...+..+++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 82 ~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCccccc-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863111 12344444321 111122 245778899999974 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 226 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIF 226 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHh
Confidence 999999999999999988877642 579999999999999999999999999996 678888774
No 102
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-47 Score=331.40 Aligned_cols=204 Identities=22% Similarity=0.329 Sum_probs=169.1
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
.+++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 8 ~~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 8 SDTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 346899999999995 457999999999999999999999999999999999999999999998773 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhC----------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCF----------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
++|++|++.. ....+..+++.... .....+++.++++.+++.+ ..++++.+|||||+||++|||||+
T Consensus 87 i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 87 VAYLPQQLPA--AEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred eEEeccCCCC--CCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCCHHHHHHHHHHHHHh
Confidence 8999997532 22234444443210 0112345788899999964 567888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.+|+||||||||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELM 236 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhc
Confidence 999999999999999999999888877543 579999999999999999999999999996 567777664
No 103
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=324.62 Aligned_cols=193 Identities=26% Similarity=0.381 Sum_probs=160.1
Q ss_pred CcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
++|+++|+++.|+++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 579999999999642 46899999999999999999999999999999999999999999998762
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
..++|++|++.. ....+..+++.. .... ...+++.++++.+++.+ ..++++.+||||||||++|||||
T Consensus 84 ~~~~~i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 84 LRNQKLGFIYQFHHL--LPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-RANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHhccEEEEecCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHH
Confidence 248999998632 222244444321 1111 12346788999999974 45678899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++.. +|++++|++|+++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~ 224 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLT 224 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEE
Confidence 9999999999999999999999988887653 5699999999999986 5799999999986
No 104
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-47 Score=340.63 Aligned_cols=205 Identities=20% Similarity=0.298 Sum_probs=167.4
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC----CCceEEEEcCee--------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAKV-------- 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~~~~-------- 119 (266)
+|+++||++.|++. ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999642 358999999999999999999999999999999999997 489999988742
Q ss_pred -------eEEEEeccccCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCc--ccccCCCCCCChHHHHHH
Q 024529 120 -------RIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQKSRV 183 (266)
Q Consensus 120 -------~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqRv 183 (266)
.++|++|++...++...+....+. ..... ...+++.++++.+++.+ ...++++.+|||||+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 489999987433333333322211 11111 12456788999999964 235678899999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
+|||||+.+|++||+||||++||+.++..+++.|.+. +.|+|+||||++.+..+||+|++|.+|+++ ..|+.+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 9999999999999999999999999999988877643 569999999999999999999999999997 46776665
Q ss_pred H
Q 024529 260 K 260 (266)
Q Consensus 260 ~ 260 (266)
.
T Consensus 242 ~ 242 (326)
T PRK11022 242 F 242 (326)
T ss_pred h
Confidence 3
No 105
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.1e-47 Score=322.63 Aligned_cols=192 Identities=23% Similarity=0.383 Sum_probs=158.4
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
+|+++|+++.|+++ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 47899999999542 46899999999999999999999999999999999999999999988752
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..++|++|++.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus 81 ~~~~i~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFHHL--LPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-RINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEeccccc--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHh
Confidence 248999998632 222344444321 11111 2345778999999974 457888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++.. ||++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999998887643 5699999999999875 8999999999874
No 106
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-47 Score=333.83 Aligned_cols=204 Identities=28% Similarity=0.372 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
.|+++|+++.|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 38999999999642 35899999999999999999999999999999999999999999988763
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
..++|++|++...+. ..+..+++.. ...... .+.+.++++.+++.....++++.+||||||||++|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 248999998521111 2244444321 111111 234667889999964455788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV-LSGKPKDIF 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999998887654 579999999999999999999999999996 568877653
No 107
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-47 Score=329.89 Aligned_cols=201 Identities=26% Similarity=0.382 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
+|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 689999999995 456999999999999999999999999999999999999999999998774 24899
Q ss_pred EeccccCCCCCCCcHHHHHHHhC--CC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc------c
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCF--PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF------K 191 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~------~ 191 (266)
++|++.. ....+..+++.... .. ...+.+.++++.+++.+ ..++++.+||||||||++|||||+ .
T Consensus 81 ~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 81 LPQHSSL--SFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-LAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred EccCCcC--CCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 9998532 22335555443211 11 12345778899999964 567889999999999999999999 5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|++|||||||++||+.++..+.+.|.+ .+.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVL 229 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999999999999988887764 3569999999999999999999999999996 578877654
No 108
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.9e-47 Score=325.96 Aligned_cols=201 Identities=19% Similarity=0.261 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~ 123 (266)
|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 57899999995 457999999999999999999999999999999999999999999998762 24899
Q ss_pred EeccccCCCCCCCcHHHHHHHh--CCCC-cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRC--FPGV-PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++|++.. ....+...++... .... ..+...++++.++......++++.+|||||+||++|||||+.+|++|||||
T Consensus 80 ~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 80 VPQGREI--FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred eccCCcc--cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9998642 2223444433211 1111 233456677777632244678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~ 220 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV-ASGAGDELD 220 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHcC
Confidence 99999999999998887653 569999999999999999999999999996 678887763
No 109
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=326.15 Aligned_cols=201 Identities=18% Similarity=0.265 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------- 118 (266)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 589999999995 457999999999999999999999999999999999999999999998663
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..++|++|++.. ....+..+++.. ..... ...++.++++.+|+.. ..++++.+||||||||++|||||+
T Consensus 81 ~~~i~~~~q~~~~--~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 81 RRNVGMVFQQYNL--WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-YADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HhheEEEecCccc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHh
Confidence 148999998632 222344444321 11111 1345778899999964 567888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.+|++|||||||++||+.++..+.+.+++. +.|||++|||.+++..+||++++|++|+++ +.|+++++.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 999999999999999999999988877653 579999999999999999999999999996 678887764
No 110
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-47 Score=329.61 Aligned_cols=200 Identities=27% Similarity=0.407 Sum_probs=167.2
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~ 123 (266)
+|+++|++++|+ ++.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 689999999995 4579999999999999999999999999999999999999999999987742 4899
Q ss_pred EeccccCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
++|++... ...+..+++... +. ....+++.++++.+++.. ..++++.+|||||+||++|||||+.+|
T Consensus 81 ~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 81 LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99986322 222344433211 11 112345778899999964 467889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
++|||||||+|||+.++..+.+.|.+. +.|||++|||++++.++||++++|++|+++ ..|+.+++
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 225 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEV 225 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHh
Confidence 999999999999999999998887653 569999999999999999999999999996 56777765
No 111
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.2e-46 Score=323.12 Aligned_cols=194 Identities=23% Similarity=0.312 Sum_probs=160.4
Q ss_pred CCcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------
Q 024529 53 PPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------- 118 (266)
+++|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 3579999999999642 24899999999999999999999999999999999999999999988763
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra 188 (266)
..++|++|++.. ....+..+++.. .... ...+++.++++.+++.+ ..++++.+|||||+||++||||
T Consensus 84 ~~~~~~i~~~~q~~~l--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVFQSFML--IPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-RLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEEccccc--CCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHH
Confidence 258999998632 222344444321 1111 12356788899999974 4567889999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||.+++. .||++++|++|+++
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~ 225 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQ 225 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 99999999999999999999999998887543 569999999999986 59999999999985
No 112
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=8e-47 Score=326.97 Aligned_cols=202 Identities=23% Similarity=0.362 Sum_probs=163.8
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcCe------------eeE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~~------------~~i 121 (266)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+++. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999995 456899999999999999999999999999999999995 799999998763 137
Q ss_pred EEEeccccCCCCCCCcHHHHHH---HhCC------CCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHH
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMM---RCFP------GVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAK 187 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~---~~~~------~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~lAr 187 (266)
+|++|++... ...+..+++. .... ... .+++.++++.+++.....++++. +||||||||++|||
T Consensus 80 ~~v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 80 FLAFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred Eeeecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 8999986422 2223332221 1100 011 24577889999997444567776 59999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChhHHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+ ||++++|++|+++ ..|+++++.+
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 234 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAKE 234 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhcc
Confidence 999999999999999999999999998888764 56999999999999988 8999999999996 6788877653
No 113
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-47 Score=327.59 Aligned_cols=201 Identities=21% Similarity=0.317 Sum_probs=167.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~ 122 (266)
+++++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 689999999995 457999999999999999999999999999999999999999999998762 2489
Q ss_pred EEeccccCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
|++|++.. ....+..+++... .... ....+.++++.+++.. ..++++.+|||||+||++|||||+.+|++
T Consensus 82 ~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 82 YLPQEASI--FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EeccCCcc--cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998632 2223444443211 1111 2345778899999964 45788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||++||+.++..+.+.+.+ .+.|||++||+++++..+||++++|++|+++ ..|+++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 225 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI-AHGTPTEIL 225 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE-eeCCHHHHh
Confidence 999999999999999887776653 4679999999999999999999999999996 578888764
No 114
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-48 Score=323.47 Aligned_cols=203 Identities=28% Similarity=0.404 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
+++++++++++| |+-.+++||||++++||+++|+||||||||||+|+|+|+++|++|+|.+.++ ..+
T Consensus 3 ~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999999 5667999999999999999999999999999999999999999999998875 246
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh------------CC------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC------------FP------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~------------~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv 183 (266)
+.-||....+ ...++++++.-. .+ ....+++.++|+.+|+.+ ..+.+.++||+||++|+
T Consensus 82 ~RTFQ~~rlF--~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 82 ARTFQITRLF--PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRPAGNLSYGQQRRL 158 (250)
T ss_pred eeeccccccc--CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcchhhcCChhHhHHH
Confidence 7778875322 223344433211 00 112456788999999985 67899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
.|||||+.+|++||||||.+||.+....++.+.+.+. +.||++|.||++.+..+||||+||+.|+++ ++|++++.
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV 237 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEV 237 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHH
Confidence 9999999999999999999999999888887776543 469999999999999999999999999997 79999987
Q ss_pred HH
Q 024529 260 KK 261 (266)
Q Consensus 260 ~~ 261 (266)
.+
T Consensus 238 ~~ 239 (250)
T COG0411 238 RN 239 (250)
T ss_pred hc
Confidence 53
No 115
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.5e-46 Score=326.39 Aligned_cols=201 Identities=21% Similarity=0.262 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-----ceEEEEcCe-----------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~----------- 118 (266)
+|+++|++++|+ +..+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 478999999995 456899999999999999999999999999999999999998 999988653
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHH--hCCC-C----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-V----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. .. .+..+++.. .... . ..+.+.++++.+++.. ...++++.+||||||||++||
T Consensus 80 ~~~~i~~v~q~~~~--~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 156 (247)
T TIGR00972 80 LRRRVGMVFQKPNP--FP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156 (247)
T ss_pred HHhheEEEecCccc--CC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence 248999998632 22 344444321 1111 1 1345778899999962 345678899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 231 (247)
T TIGR00972 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV-EYGPTEQIF 231 (247)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999998888754 369999999999999999999999999996 578877764
No 116
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.2e-46 Score=322.20 Aligned_cols=198 Identities=23% Similarity=0.364 Sum_probs=165.8
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------eeEEEEeccc
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH 128 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~~ 128 (266)
|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 47899999995 457999999999999999999999999999999999999999999998764 2588999975
Q ss_pred cCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529 129 VDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206 (266)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD 206 (266)
.. ....+..+++.. ........++.++++.+++.+ ..++++.+|||||+||++||||++.+|++|||||||++||
T Consensus 80 ~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 80 PL--YENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred Cc--cccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 32 222344444321 111334567888999999974 4578889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 207 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 207 ~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
+.++..+.+.|.+. +.|||++|||.+++..+||++++|++|++. ..|++.+
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~ 210 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG-YQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EecChhh
Confidence 99999998888654 469999999999999999999999999996 4566543
No 117
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.4e-47 Score=320.70 Aligned_cols=190 Identities=33% Similarity=0.512 Sum_probs=156.3
Q ss_pred EEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529 57 SFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (266)
Q Consensus 57 ~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 124 (266)
+++|+++.|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999542 56899999999999999999999999999999999999999999998763 248999
Q ss_pred eccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 125 SQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
+|++...+ ...+..+++... .... ...++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~q~~~~~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPDDQF-FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChhhhc-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99852111 122444433211 1111 1345778899999974 45788899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 199 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999998888654 4699999999999999999999999885
No 118
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-48 Score=317.93 Aligned_cols=205 Identities=24% Similarity=0.384 Sum_probs=169.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
++|.++|+.|+| +++.++++|||+|++||++|++||||+||||.+.++.|+.+|++|.|.+++. ..+
T Consensus 3 ~~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 468999999999 4567899999999999999999999999999999999999999999998763 369
Q ss_pred EEEeccccC--CCCCCCcHHHHHHHhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVD--GLDLSSNPLLYMMRCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
||+||++.- .+++..|....+.....+ ....++.++|+.|.+. +..+++..+||||||+|+.|||||+.+|++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 999999732 222222222211111111 1223466899999997 577899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHH---HHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 196 ILLDEPSNHLDLDAVEA---LIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~---l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+||||||+|+||.+... ++..|+..+..|+++.|+..+...+|||.+++.+|++. ++|+++++.+
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~ 228 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVN 228 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhc
Confidence 99999999999987655 45566677789999999999999999999999999997 7999998753
No 119
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-46 Score=332.36 Aligned_cols=204 Identities=24% Similarity=0.295 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCCCC----cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------
Q 024529 54 PIISFSDASFGYPGGP----ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------- 118 (266)
..|+++|+++.|++.. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999996432 4899999999999999999999999999999999999999999987652
Q ss_pred -----eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
..++|++|++...+. ..+..+++.. ...... .+.+.++++.+++.....++++.+||||||||++|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 148999998531111 1233333321 111111 2346678899999544567889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEI 238 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999999988877543 569999999999999999999999999996 56777665
No 120
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-46 Score=329.71 Aligned_cols=203 Identities=32% Similarity=0.485 Sum_probs=168.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI 121 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i 121 (266)
+|+++|++++|++...+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 5889999999964456899999999999999999999999999999999999999999988763 238
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++...+ +..+..+++... .... ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++
T Consensus 81 ~~v~q~~~~~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQL-FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999852111 122444443211 1111 1245778899999974 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||++||+.++..+.+.+.+. +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII-KEGTPKEVF 225 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999998888654 569999999999999999999999999997 578888764
No 121
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=343.33 Aligned_cols=200 Identities=24% Similarity=0.275 Sum_probs=161.2
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------ee
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR 120 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~ 120 (266)
++..++.+.| +...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++. ..
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 3334444444 2234799999999999999999999999999999999999999999998763 25
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++.. ....+..+++... .... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 108 igyv~Q~~~l--~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~~~P~ 184 (400)
T PRK10070 108 IAMVFQSFAL--MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALAINPD 184 (400)
T ss_pred EEEEECCCcC--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998632 2233444443211 1111 2346778999999974 5678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 185 iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l~ 253 (400)
T PRK10070 185 ILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEIL 253 (400)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHHH
Confidence 99999999999999999988877643 569999999999999999999999999996 568777664
No 122
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-46 Score=337.41 Aligned_cols=208 Identities=20% Similarity=0.307 Sum_probs=169.0
Q ss_pred CCCcEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCe-------
Q 024529 52 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------- 118 (266)
..++|+++|+++.|+. ...+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 3568999999999952 246899999999999999999999999999999999999996 999998774
Q ss_pred --------eeEEEEeccccCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 024529 119 --------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS 181 (266)
Q Consensus 119 --------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq 181 (266)
..++|++|++...++...+...++. ....... .+++.++++.+++.+. ..++++++|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 1599999997433333333333221 1111122 3467788999999642 235788999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
||+|||||+.+|++||+||||++||+.++..+++.|.+. +.|+|+||||++.+..+||++++|.+|+++ ..|+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHH
Confidence 999999999999999999999999999999888876543 679999999999999999999999999997 568777
Q ss_pred HHH
Q 024529 258 DYK 260 (266)
Q Consensus 258 ~~~ 260 (266)
++.
T Consensus 248 ~i~ 250 (330)
T PRK09473 248 DVF 250 (330)
T ss_pred HHH
Confidence 664
No 123
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=330.05 Aligned_cols=203 Identities=27% Similarity=0.364 Sum_probs=169.2
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..+|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 45799999999995 456999999999999999999999999999999999999999999998764 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++... ...+..+++... .. ......+.++++.+++.+ ..++++.+|||||+||++|||||+.
T Consensus 84 ~~v~q~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 84 GLLAQNATTP--GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-LADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred EEeeccCcCC--CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCChHHHHHHHHHHHHhc
Confidence 9999986322 223444443221 00 012345778899999974 5678899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|++|||||||+|||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 232 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV-AQGAPKEIV 232 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999988877653 569999999999999999999999999996 578877654
No 124
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-46 Score=325.48 Aligned_cols=203 Identities=20% Similarity=0.283 Sum_probs=166.4
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------- 118 (266)
+|+|+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|++. |++|+|.+++.
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 56899999999995 4569999999999999999999999999999999999964 68999988762
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+..+++... ... ...+++.++++.+++.+ ...++++.+|||||||||+
T Consensus 83 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 83 VELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred HHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 248999998632 22 2444443211 111 12345777888888853 2346788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 236 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999998888764 469999999999999999999999999996 567777663
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=329.92 Aligned_cols=202 Identities=24% Similarity=0.360 Sum_probs=165.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~ 122 (266)
||+++|++++|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 5889999999964456999999999999999999999999999999999999999999988763 2489
Q ss_pred EEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++|++...+ ...+..+++... .... ..+++.++++.+++.. ..++++..|||||+||++|||||+.+|+||
T Consensus 81 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863211 123444443211 1111 1345778899999964 567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||||++||+.++..+.+.+++. +.|||++|||++++. .||++++|++|+++ +.|+.+++.
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999988887643 569999999999995 69999999999996 678877653
No 126
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-46 Score=330.23 Aligned_cols=203 Identities=25% Similarity=0.375 Sum_probs=167.4
Q ss_pred CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
++|+++|+++.|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 379999999999632 45899999999999999999999999999999999999999999998774 25
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++... ....+..+++... ..+.. .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus 83 i~~v~q~~~~~-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 83 IGMVFQNPDNQ-FVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-FKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred ceEEEcChHHh-cccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 89999986211 1223444443211 11111 345788999999974 5678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+++.+.+. +.|||+||||++++. .||++++|++|+++ ..|+.+++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVE-STSTPRELF 228 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999999988877643 579999999999995 79999999999996 578877754
No 127
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=327.80 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCee-----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV----------- 119 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~----------- 119 (266)
++|+++||++.|+ +..+|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.+++..
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5799999999995 457899999999999999999999999999999999999986 4999877631
Q ss_pred -----eEEEEeccccCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 024529 120 -----RIAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180 (266)
Q Consensus 120 -----~i~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 180 (266)
.++|++|++.. ....+..+++.... .....+++.++++.+++.. ..++++.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~ 158 (262)
T PRK09984 82 RKSRANTGYIFQQFNL--VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-FAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHhheEEEcccccc--ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-HHhCCccccCHHHH
Confidence 37999998532 22234444442110 0112346788999999964 56788999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 256 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 256 (266)
||++|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|++. +.|++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~ 237 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSS 237 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCH
Confidence 9999999999999999999999999999999998888653 569999999999999999999999999996 67888
Q ss_pred hHH
Q 024529 257 HDY 259 (266)
Q Consensus 257 ~~~ 259 (266)
+++
T Consensus 238 ~~~ 240 (262)
T PRK09984 238 QQF 240 (262)
T ss_pred HHh
Confidence 877
No 128
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1e-46 Score=320.15 Aligned_cols=190 Identities=22% Similarity=0.341 Sum_probs=158.3
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA 122 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~ 122 (266)
|+++|+++.|++ ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 478999999954 57999999999999999999999999999999999999999999998763 2489
Q ss_pred EEeccccCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
|++|++.. ....+..+++... .... ..+++.++++.+++.. ..++++.+|||||+||++|||||+.+|++
T Consensus 80 ~~~q~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 80 MVFQQFNL--FPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred EEeccccc--CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 99998632 2223444433211 1111 2345678899999974 46788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
|||||||+|||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999988888753 56999999999999999999999999874
No 129
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=6.5e-46 Score=323.74 Aligned_cols=204 Identities=21% Similarity=0.293 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC----CceEEEEcCe---------ee
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~~~---------~~ 120 (266)
.+|+++|++++| + ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 3 QQIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred cEEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 369999999999 4 4689999999999999999999999999999999999999 9999998763 25
Q ss_pred EEEEeccccCCCCCCCcHHHHHH---HhC-CCCcHHHHHHHHHhcCCCcc--cccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMM---RCF-PGVPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++...+....+...... ... .....+++.++++.+++.+. ..++++.+|||||+||++|||||+.+|+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 89999986311221222222211 111 12234568889999999642 3467889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 229 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV-EQGDVETLF 229 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999998888877643 569999999999999999999999999996 678877764
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.2e-46 Score=326.25 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=165.5
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------- 118 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------- 118 (266)
|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999995 457999999999999999999999999999999999999999999987653
Q ss_pred -------eeEEEEeccccCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 024529 119 -------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++. +....+..+++... .... ..+.+.++++.+++.+ ..++.+.+|||||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFN--LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-KADHMPAQLSGGQQQRVA 156 (252)
T ss_pred hHHHHHhhCeEEEecCcc--cCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhhcChhhcCHHHHHHHH
Confidence 24889999753 22223444443211 0111 2345778899999974 567788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999888877643 569999999999999999999999999996 568877764
No 131
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-46 Score=324.68 Aligned_cols=203 Identities=20% Similarity=0.256 Sum_probs=166.7
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------- 118 (266)
++|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 3699999999995 45699999999999999999999999999999999999874 7999988764
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. ....+..+++.. .... ...+.+.++++.+++.+ ...++++.+|||||+||++||
T Consensus 81 ~~~i~~v~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 81 RRRVQMVFQIPNP--IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred hccEEEEeccCcc--CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 358999998632 223344444321 1111 11345678899999853 235678899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVF 233 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHH
Confidence 9999999999999999999999999998888764 469999999999999999999999999996 578877663
No 132
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-46 Score=330.07 Aligned_cols=199 Identities=22% Similarity=0.275 Sum_probs=164.8
Q ss_pred EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeE
Q 024529 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI 121 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i 121 (266)
.++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5779999994 567899999999999999999999999999999999999999999988663 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++.. ....+..+++.. ..... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus 105 ~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 105 SMVFQSFAL--LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-WEHKYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred EEEecCccc--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999998632 222344444321 11111 2345778899999974 46788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||+|||+.++..+.+.+.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 249 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV-QVGTPEEIL 249 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999998877653 579999999999999999999999999996 567777664
No 133
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-46 Score=328.49 Aligned_cols=202 Identities=23% Similarity=0.280 Sum_probs=163.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------eeEEEEec
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQ 126 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~q 126 (266)
+|+++|++++|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 6999999999964467999999999999999999999999999999999999999999998874 25999999
Q ss_pred cccCCCCCCCcHHHHHH----H---hC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 127 HHVDGLDLSSNPLLYMM----R---CF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~----~---~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
++.............+. . .. . ....+.+.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 86321111111111110 0 00 0 112345677899999974 457889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||||||++||+.++..+.+.|.+. +.|||+||||++++..+||+++++ +|+++ ..|+.+++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~-~~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL-ASGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHhc
Confidence 999999999999999998888654 569999999999999999999877 89986 56777664
No 134
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=8.8e-46 Score=363.54 Aligned_cols=201 Identities=25% Similarity=0.446 Sum_probs=174.2
Q ss_pred cEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 55 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
.++++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 457999999999999999999999999999999999999999999999874 3699
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++.. +..+..+++....+ .+++++.++++..++.+.... .....||||||||++|||||+++
T Consensus 531 ~v~Q~~~l---f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 531 VVLQNGRL---MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred EEccCCcc---CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999752 34566777654433 677889999999888654322 22467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|++||||||||+||+.+.+.+.+.+.+.+.|+|+|||+++.+.. ||+|++|++|+++ ..|+.+++.+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv-~~G~~~~Ll~ 673 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVV-QQGTYDELMA 673 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999888899999999999875 9999999999997 5798887643
No 135
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-46 Score=320.25 Aligned_cols=200 Identities=28% Similarity=0.413 Sum_probs=166.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
||+++||+++|++ . ..++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 ~l~~~~l~~~~~~-~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYHH-L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEECC-c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 4889999999953 3 24999999999999999999999999999999999999999998764 2589999
Q ss_pred ccccCCCCCCCcHHHHHHHhC-CC-----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMRCF-PG-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++. +....+..+++.... .. ...+++.++++.+++.+ ..++++.+|||||+||++||||++.+|++||||
T Consensus 78 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 78 QENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED-LLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred cccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9863 222234444442211 11 12456788999999964 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|++. +.|+.+++.+
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999888877643 569999999999999999999999999996 6788877753
No 136
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.4e-46 Score=325.82 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=167.3
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 124 (266)
|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999995 457999999999999999999999999999999999999999999998773 248999
Q ss_pred eccccCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 125 SQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
+|++. +....+..+++... .. ....+++.++++.+++. ...++++.+|||||+||++|||||+.+|+
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 81 EQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99863 22233444444221 00 01234677889999996 45678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVL 225 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhh
Confidence 99999999999999999988887654 569999999999999999999999999996 678877763
No 137
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.8e-46 Score=355.59 Aligned_cols=203 Identities=25% Similarity=0.365 Sum_probs=171.7
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 120 (266)
.++|+++|+++.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 45899999999995 457999999999999999999999999999999999999999999998763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
++|++|++. +....+..+++..... ....+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||
T Consensus 88 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-DLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-cccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 899999863 2223345554432111 112456788999999974 46788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 199 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+|||+.++.++.+.|++. +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 228 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLS 228 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcC
Confidence 9999999999999998887653 579999999999999999999999999996 678887763
No 138
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.6e-46 Score=340.11 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=160.7
Q ss_pred EcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeEEEEeccc
Q 024529 64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHH 128 (266)
Q Consensus 64 ~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~~q~~ 128 (266)
.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++
T Consensus 2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46 4566899999999999999999999999999999999999999999998773 3599999986
Q ss_pred cCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 129 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
.. ....++.+++.. ...+. ..+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~l--~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 81 AL--FPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred cC--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 42 223344444321 11111 2356788999999964 567899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 203 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++||+.++..+.+.+.+. +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv-~~g~~~ei~ 218 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV-QVGTPDEIL 218 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-eeCCHHHHH
Confidence 999999999988877543 579999999999999999999999999997 578877764
No 139
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=323.15 Aligned_cols=202 Identities=19% Similarity=0.284 Sum_probs=165.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
++|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4799999999995 457999999999999999999999999999999999999999999988763 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh--CCC--CcHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPG--VPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
+|++|++.. ....+..+++... ... ...+.+.++++.+ ++.+ ..++++.+|||||+||++|||||+.+|++|
T Consensus 83 ~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 83 AIVPEGRRV--FSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEeccCccc--CCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999998532 2223444444321 111 1123456667777 4643 446788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||||++||+.++..+.+.|.+ .+.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL 225 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence 99999999999999988887764 3579999999999999999999999999996 678887764
No 140
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.8e-46 Score=365.20 Aligned_cols=203 Identities=26% Similarity=0.398 Sum_probs=174.8
Q ss_pred CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++||+|+|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35999999999975 357999999999999999999999999999999999999999999999874 369
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++.. +..+..+++....+..+++++.++++..++.+.... .....||||||||++|||||++
T Consensus 556 ~~v~Q~~~l---f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 556 AMVDQDIFL---FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred eEEecCChh---hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 999999742 345666776543345677888888888887643322 2346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|++||||||||+||+.+...+.+.+.+.+.|+|+|||+++.+.. ||+|++|++|+++ ..|+.+++.+
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~-~~G~~~~Ll~ 700 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVV-QRGTHEELWA 700 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEE-EecCHHHHHH
Confidence 999999999999999999999999998878899999999999875 9999999999997 6799888754
No 141
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-46 Score=338.75 Aligned_cols=199 Identities=22% Similarity=0.282 Sum_probs=165.7
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------e
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~ 119 (266)
||++ ||+++|+ +. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 5788 9999995 33 23 899999999999999999999999999999999999999987652 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
.++|++|++.. ....+..+++.........+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 77 ~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 77 RIGYVFQDARL--FPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP-LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred CEEEEcCCccc--CCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 48999998632 223345555432222233567888999999974 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||++||+.++..+.+.|++. +.|+|+||||++++..+||++++|++|++. ..|+++++..
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~i~~ 218 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK-AFGPLEEVWA 218 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE-EecCHHHHHh
Confidence 999999999999888877643 569999999999999999999999999996 5688877643
No 142
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-46 Score=344.27 Aligned_cols=251 Identities=25% Similarity=0.348 Sum_probs=196.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhccCcccccCC-CCcccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEEeC
Q 024529 3 SFIDKFRYNAKRASLVQSRIKALERMGHVDEVVND-PDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDL 81 (266)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~ 81 (266)
||..|+|.-+.-.+..+....+.+.+....+.+.. ++..... ......+..++++|+++.|++++++++|+||++++
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~--~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~ 346 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKA--EVANEPPIEISLENLSFRYPDGKPALSDLNLTIKA 346 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccc--ccccCCCceeeecceEEecCCCCcccCCceeEecC
Confidence 67888888888777776666666655444332222 1111000 01111123456679999998777899999999999
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
|+.++|+|+||||||||+++|+|+.+|++|+|.+++. ..++|++|++.. +..+..+++....++.+
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l---f~gTireNi~l~~~~~s 423 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL---FAGTIRENILLARPDAS 423 (559)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc---ccccHHHHhhccCCcCC
Confidence 9999999999999999999999999999999999874 359999999752 34456666655555677
Q ss_pred HHHHHHHHHhcCCCccccc-----C----CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-
Q 024529 151 EQKLRAHLGSFGVTGNLAL-----Q----PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF- 220 (266)
Q Consensus 151 ~~~~~~~l~~~~l~~~~~~-----~----~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~- 220 (266)
++++.++++..++.+.... . ....|||||+|||++||||+.+++++||||||+|||.++.+.+.+.|.+.
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~ 503 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA 503 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH
Confidence 8889999999888654332 1 23459999999999999999999999999999999999999999988764
Q ss_pred -CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 221 -QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 221 -~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|+|+|||++..+.. ||+|++|++|+++ ..|+++++.
T Consensus 504 ~~ktvl~itHrl~~~~~-~D~I~vld~G~l~-~~g~~~~L~ 542 (559)
T COG4988 504 KQKTVLVITHRLEDAAD-ADRIVVLDNGRLV-EQGTHEELS 542 (559)
T ss_pred hCCeEEEEEcChHHHhc-CCEEEEecCCcee-ccCCHHHHh
Confidence 5799999999999985 9999999999997 678888764
No 143
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.6e-46 Score=327.15 Aligned_cols=205 Identities=22% Similarity=0.333 Sum_probs=166.8
Q ss_pred CcEEEEeeEEEcCC--------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------
Q 024529 54 PIISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------- 118 (266)
++|+++||++.|++ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 36999999999963 357999999999999999999999999999999999999999999988764
Q ss_pred -------eeEEEEeccccCCCCCCCcHHHHHH---HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 024529 119 -------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++...+....+...++. ...... ....+.++++.+++.....++++..|||||+||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 2489999986322222223333221 111111 23457889999999644567889999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++||+++++..+||++++|++|+++ ..|+.++.
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 239 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVGDK 239 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe-eeCChhhc
Confidence 999999999999999999999999998887777543 569999999999999999999999999996 56766553
No 144
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-46 Score=325.90 Aligned_cols=205 Identities=20% Similarity=0.270 Sum_probs=166.3
Q ss_pred CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe-------
Q 024529 51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 118 (266)
Q Consensus 51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------- 118 (266)
++.++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 17 ~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 17 AKEHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCCceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 3456899999999995 4579999999999999999999999999999999999864 78999987652
Q ss_pred ------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 024529 119 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR 182 (266)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqR 182 (266)
..++|++|++.. +. .+..+++... .... ..+.+.++++.+++.. ...++++.+|||||+||
T Consensus 96 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 248999998632 11 2444443211 1111 1234667788888742 23467889999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ +.|+.+++.
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 251 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQIF 251 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999998888765 469999999999999999999999999996 567777653
No 145
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.8e-46 Score=357.52 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=171.2
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
.++++||+|.|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++. ..++|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 4999999987755567999999999999999999999999999999999999 99999999874 36999
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHccCC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
++|++.. +..+..+++....++.+++++.++++..++++... ......||||||||++|||||+++|
T Consensus 428 v~Q~~~L---F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 428 VGQNPQL---PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred ecCCCcC---CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999752 34567777655434567888888888887754322 1234679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|||||||||+||+++.+.+.+.+.+. +.|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~-e~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIV-QQGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEe-ecCCHHHHHh
Confidence 999999999999999999999988765 479999999999887 59999999999997 5798887753
No 146
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-47 Score=312.66 Aligned_cols=202 Identities=22% Similarity=0.303 Sum_probs=163.4
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc-----eEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~i~~~~~--------- 118 (266)
.+.++++||++.| +.+.+|+|||++|++++++|++||||||||||||++..+..... |+|.++|+
T Consensus 5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3569999999999 46779999999999999999999999999999999999887764 99988774
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh---CC---CCcHHHHHHHHHhcCCCccc---ccCCCCCCChHHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---FP---GVPEQKLRAHLGSFGVTGNL---ALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqRv~l 185 (266)
.++|++||.|.+ ++ .+.++++... .. ..-++.++..|+...|.++. .++.+..|||||+||++|
T Consensus 84 ~~lRr~vGMVFQkPnP-Fp--~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 84 VELRRRVGMVFQKPNP-FP--MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHHHheeeccCCCC-CC--chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 369999998743 22 3444443321 11 12235567778877776433 345678899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||||+.+|+|||||||||+|||.+...+.+.+.+. .-|||+|||++..+.+++|+..++..|+++++ |+.+++
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~i 235 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDKI 235 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHhh
Confidence 99999999999999999999999887777776655 35999999999999999999999999999865 555544
No 147
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-46 Score=323.56 Aligned_cols=203 Identities=22% Similarity=0.268 Sum_probs=165.8
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------- 118 (266)
.++|+++|+++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 45899999999995 45689999999999999999999999999999999999875 8999987653
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++.. ...... .+++.++++.+++.+ ...++++.+|||||+||++|
T Consensus 89 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 89 VELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred HHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 248999998632 22 344444321 111122 234677889888742 23567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 241 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI-EFGQTRQIF 241 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999999998888754 469999999999999999999999999996 567777653
No 148
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.5e-46 Score=356.18 Aligned_cols=205 Identities=24% Similarity=0.424 Sum_probs=172.0
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.+++++|++++|++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++....
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~- 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP- 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC-
Confidence 4799999999995345799999999999999999999999999999999999999999999877778999999864221
Q ss_pred CCCcHHHHHHHh-----------------C--CCC-----------------------cHHHHHHHHHhcCCCcccccCC
Q 024529 134 LSSNPLLYMMRC-----------------F--PGV-----------------------PEQKLRAHLGSFGVTGNLALQP 171 (266)
Q Consensus 134 ~~~~~~~~~~~~-----------------~--~~~-----------------------~~~~~~~~l~~~~l~~~~~~~~ 171 (266)
..++.+++... . ... ...++.++++.+++. . .+++
T Consensus 82 -~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~ 158 (552)
T TIGR03719 82 -TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-P-WDAD 158 (552)
T ss_pred -CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-c-ccCc
Confidence 22332222100 0 000 013456677788885 2 4678
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529 172 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATP 251 (266)
Q Consensus 172 ~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 251 (266)
+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.++++|||+||||++++..+||++++|++|+++.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~ 238 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP 238 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999876
Q ss_pred cCCChhHHHHH
Q 024529 252 FHGTFHDYKKM 262 (266)
Q Consensus 252 ~~g~~~~~~~~ 262 (266)
+.|++++|.+.
T Consensus 239 ~~g~~~~~~~~ 249 (552)
T TIGR03719 239 WEGNYSSWLEQ 249 (552)
T ss_pred ecCCHHHHHHH
Confidence 88999987654
No 149
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-46 Score=315.30 Aligned_cols=189 Identities=24% Similarity=0.349 Sum_probs=158.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q 126 (266)
|+++|++++|++ .. .|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 478999999953 32 3999999999999999999999999999999999999999998774 24899999
Q ss_pred cccCCCCCCCcHHHHHHHhCC---C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMRCFP---G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++.. ....+..+++..... . ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus 78 ~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 78 ENNL--FAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred cccc--CCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8642 222344444432110 1 12446788999999974 4567889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++
T Consensus 155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 99999999999998887643 569999999999999999999999999986
No 150
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-46 Score=323.06 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=166.4
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------- 118 (266)
.++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 45899999999995 45699999999999999999999999999999999999987 4899987653
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCC-C----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-V----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. + ..+..+++... ... . ..+.+.++++.+++.. ...++++.+||||||||++
T Consensus 84 ~~~~~~i~~v~q~~~~-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 84 LELRRKIGMVFQTPNP-F--LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred HHHhhceEEEeecccc-c--cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 248999998642 2 23444443211 111 1 1345677888888731 2356788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 237 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE-EESSTDELF 237 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999998888765 469999999999999999999999999996 578877764
No 151
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-46 Score=328.38 Aligned_cols=203 Identities=27% Similarity=0.382 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
++|+++||++.|++ .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 57999999999963 346999999999999999999999999999999999999999999998774 258
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++.. .....+..+++... ..... .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++
T Consensus 84 ~~~~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 84 GMVFQNPDN-QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-FLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred EEEEeCHHH-hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999998621 11223444444211 11111 345788899999974 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||+|||+.++..+.+.|.+. +.|||++|||++++. .||++++|++|+++ +.|+.+++.
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999998887643 569999999999997 59999999999986 678877653
No 152
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.1e-46 Score=360.47 Aligned_cols=204 Identities=26% Similarity=0.475 Sum_probs=171.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+...+++++|.+....
T Consensus 2 ~~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~- 79 (635)
T PRK11147 2 SLISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV- 79 (635)
T ss_pred cEEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC-
Confidence 3799999999995 46799999999999999999999999999999999999999999999887667888887642111
Q ss_pred CCCcHHHHH---------------------------------HH------hCC-CCcHHHHHHHHHhcCCCcccccCCCC
Q 024529 134 LSSNPLLYM---------------------------------MR------CFP-GVPEQKLRAHLGSFGVTGNLALQPMY 173 (266)
Q Consensus 134 ~~~~~~~~~---------------------------------~~------~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~ 173 (266)
......++ .. ... .....++.++++.+|+. .++++.
T Consensus 80 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~ 155 (635)
T PRK11147 80 -EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALS 155 (635)
T ss_pred -CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchh
Confidence 01111100 00 000 11245678889999996 268899
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecC
Q 024529 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFH 253 (266)
Q Consensus 174 ~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~ 253 (266)
+|||||||||+|||||+.+|+||||||||||||+.++.++.+.|.++++|||+||||++++..+||+|++|++|+++.+.
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~ 235 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYP 235 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999998788
Q ss_pred CChhHHHHHH
Q 024529 254 GTFHDYKKML 263 (266)
Q Consensus 254 g~~~~~~~~~ 263 (266)
|++++|.+..
T Consensus 236 g~~~~~~~~~ 245 (635)
T PRK11147 236 GNYDQYLLEK 245 (635)
T ss_pred CCHHHHHHHH
Confidence 9999986543
No 153
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-46 Score=347.30 Aligned_cols=206 Identities=24% Similarity=0.360 Sum_probs=176.0
Q ss_pred CCCcEEEEeeEEEcCC------C----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---
Q 024529 52 GPPIISFSDASFGYPG------G----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~------~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--- 118 (266)
..++++++||++.|.. . ..+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.+.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4678999999999962 1 35799999999999999999999999999999999999999999998764
Q ss_pred ----------eeEEEEeccccCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 024529 119 ----------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 181 (266)
Q Consensus 119 ----------~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 181 (266)
..+-++||+++..++...++...+... ... ...+++.++++.+++.....++++++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 257889999887777776665544321 111 123468888999999987788999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
|++|||||+.+|++|++|||||+||+..+..+++.|++ ++.|.|+||||+.++..+||||++|.+|++++ .|+.+
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE-~G~~~ 515 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE-EGPTE 515 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEE-eCCHH
Confidence 99999999999999999999999999999998888764 46799999999999999999999999999974 56544
Q ss_pred H
Q 024529 258 D 258 (266)
Q Consensus 258 ~ 258 (266)
+
T Consensus 516 ~ 516 (539)
T COG1123 516 K 516 (539)
T ss_pred H
Confidence 4
No 154
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-46 Score=322.30 Aligned_cols=203 Identities=20% Similarity=0.215 Sum_probs=165.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------- 118 (266)
++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4799999999995 45699999999999999999999999999999999999987 4999988653
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCC---C---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---V---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. ....+..+++... ... . ...++.++++.+++.. ...++++.+||||||||++
T Consensus 82 ~~~~~i~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 82 EVRREVGMVFQYPNP--FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred HHhhceeEEecCCcc--CCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 248999998632 2223444433211 111 1 1235677888888742 2356788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI-EVGPTRKVF 236 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999998888764 469999999999999999999999999996 568877764
No 155
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-46 Score=327.75 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCC-----CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------- 118 (266)
++|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 47999999999963 246999999999999999999999999999999999999999999988753
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..++|++|++...+. ..+...++... .... ..+++.++++.+++.+ ..++++.+|||||+||++|||||+
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-YRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHH
Confidence 248999998632121 12333333211 0011 1355788899999974 567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.+|++|||||||+|||+.++..+.+.|.+. +.|||+||||++++.. ||++++|++|+++ ..|+.+++.
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~ 232 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIF 232 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 999999999999999999999998887653 5699999999999986 9999999999996 578887764
No 156
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.5e-46 Score=319.23 Aligned_cols=197 Identities=20% Similarity=0.354 Sum_probs=162.0
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
+++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 45799999999995 456999999999999999999999999999999999999999999998763 258
Q ss_pred EEEeccccCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
+|++|++.. + ..+..+++.. ... ....+++.++++.+++.+...++++.+|||||+||++|||||+.+|++||
T Consensus 84 ~~~~q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 84 SYCAQTPTL-F--GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred EEEeccccc-c--cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998632 1 2244444321 111 12345677899999996445678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEe--CCeEEecCCCh
Q 024529 198 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATPFHGTF 256 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~--~G~i~~~~g~~ 256 (266)
|||||++||+.++..+.+.|.++ +.|||++|||.+++. .||++++|+ .|++ .+|++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~--~~~~~ 222 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEM--QEARY 222 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchH--hhhhh
Confidence 99999999999999888877653 569999999999996 699999996 4555 35654
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=321.91 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=166.2
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------- 118 (266)
..+|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999995 4569999999999999999999999999999999999986 58999987652
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh---CCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+..+++... ..... .+++.++++.+++.. ...++++.+|||||+||++
T Consensus 90 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 90 ALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred HHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 248999998632 22 3444443211 11111 245778899998742 2356788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 243 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI-EFGNTDTIF 243 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999998888764 469999999999999999999999999997 567777653
No 158
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=323.02 Aligned_cols=204 Identities=20% Similarity=0.239 Sum_probs=167.0
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe--------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------- 118 (266)
..++|+++||++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|++++.
T Consensus 16 ~~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 16 TEIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CCceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 345899999999995 45699999999999999999999999999999999999875 8999988762
Q ss_pred -----eeEEEEeccccCCCCCCCcHHHHHHHh--CCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 024529 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR 182 (266)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqR 182 (266)
..++|++|++.. +. .+..+++... ... ...+++.++++.+++.. ...++++.+||||||||
T Consensus 95 ~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 95 VVELRARVGMVFQKPNP-FP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred hHHHhhceEEEecCCCC-CC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 248999998632 11 2444443211 111 11345678899999853 13457889999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKMF 250 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999998888764 469999999999999999999999999996 567777664
No 159
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-46 Score=316.02 Aligned_cols=204 Identities=23% Similarity=0.423 Sum_probs=174.7
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------eeEEEEecc
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQH 127 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~ 127 (266)
++++++|+++| ++..+++|+||++++|++.|++|||||||||.+|+|+|++.|++|+|.+++. .+|||+|.+
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 58999999999 5677999999999999999999999999999999999999999999999884 479999998
Q ss_pred ccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 128 HVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 128 ~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
.- ++...++.+.+. ....+.+ ..++..+|+++++.+. ..+++.+||.|++|++.+..+++++|+++|||||
T Consensus 81 RG--Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~-~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 81 RG--LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK-KTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred hc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccc-ccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 53 344445544332 1122333 3457789999999864 5689999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529 202 SNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 263 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 263 (266)
||||||.+.+.+.+.+. +.+.|||++||.++-++.+||++++|++|+.+ .+|+.+++++..
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~~ 221 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRSF 221 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHhc
Confidence 99999999888777654 55789999999999999999999999999986 789999987643
No 160
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=324.37 Aligned_cols=204 Identities=27% Similarity=0.383 Sum_probs=166.6
Q ss_pred CCcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 53 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
.++|+++|+++.|++ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999953 457999999999999999999999999999999999999999999988763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++...+ ...+..+++... ..... ...+.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus 85 i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPDNQF-IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-YLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHHHhc-CcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999862111 123444443211 11111 234678899999974 5678889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||+|||+.++..+.+.|.+. +.|||++||+++++. .||++++|++|++. ..|+.+++.
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 230 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI-AQGKPKEIL 230 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999998888654 369999999999986 79999999999996 567776653
No 161
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-45 Score=316.61 Aligned_cols=201 Identities=22% Similarity=0.393 Sum_probs=160.7
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 124 (266)
|+++|+++.|++.+.+++|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 789999999964446899999999999999999999999999999999999999999998763 248999
Q ss_pred eccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
+|++.. + ..+..+++..........++.+.++.+++.. ...++++.+||||||||++|||||+.+|+
T Consensus 83 ~q~~~~-~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 83 LQDTFL-F--SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred cCCchh-h--hhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 998631 1 2244444432211222334444444444321 12345678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|||||||++||+.++..+.+.+.+. +.|||+|||+++++. .||++++|++|++. +.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~-~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKII-EEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEE-EeCCHHHHHh
Confidence 99999999999999999998888765 469999999999997 59999999999996 5788877754
No 162
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-46 Score=359.77 Aligned_cols=206 Identities=20% Similarity=0.256 Sum_probs=170.2
Q ss_pred CCcEEEEeeEEEcCC----------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----
Q 024529 53 PPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~----------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---- 118 (266)
.++|+++||++.|+. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 468999999999952 135899999999999999999999999999999999999999999998763
Q ss_pred ----------eeEEEEeccccCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 024529 119 ----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 181 (266)
Q Consensus 119 ----------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 181 (266)
..++|++|++...+....+...++.. .... ...+++.++++.+++.....++++.+|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 24899999863233333344443321 1111 112467889999999644567889999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
||+|||||+.+|+||||||||++||+.++.++++.|.+ .+.|||+||||++++..+||+|++|++|+++ ..|+.+
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~ 549 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRR 549 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHH
Confidence 99999999999999999999999999999998888754 3679999999999999999999999999997 567776
Q ss_pred HH
Q 024529 258 DY 259 (266)
Q Consensus 258 ~~ 259 (266)
++
T Consensus 550 ~i 551 (623)
T PRK10261 550 AV 551 (623)
T ss_pred HH
Confidence 65
No 163
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.1e-45 Score=317.22 Aligned_cols=200 Identities=23% Similarity=0.443 Sum_probs=158.9
Q ss_pred EEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 56 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
++++|+++.|++ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999953 356899999999999999999999999999999999999999999998773 24899
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH---------HHhc--CCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH---------LGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
++|++.. + ..+..+++...........+.+. ++.+ ++.. ..++++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~~~-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQENVL-F--NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDT-IVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCchh-c--cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccc-hhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 9998632 2 23444444321111222233333 3333 3332 23567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|++|||||||++||+.++..+.+.|.+. +.|||++|||++++. .||++++|++|+++ +.|+.+++..
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~ 225 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIV-EQGSHDELLA 225 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999999999998888764 469999999999996 59999999999996 6788777643
No 164
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=319.46 Aligned_cols=201 Identities=21% Similarity=0.248 Sum_probs=165.8
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC---CCceEEEEcCe-----------ee
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-----------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~-----------~~ 120 (266)
+++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 588999999995 4579999999999999999999999999999999999974 79999998764 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHHHH
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lAral 189 (266)
++|++|++.. +. .+..+++... ... ....++.++++.+++.. ...++++.+|||||+||++|||||
T Consensus 81 i~~~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 81 VGMVFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred EEEEecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 8999998632 22 3455444211 101 12235678899999953 234677899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+.+|++|||||||++||+.++..+.+.|.+. +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 229 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI-EFGESKEFF 229 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999998888753 579999999999999999999999999997 567776654
No 165
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-45 Score=319.47 Aligned_cols=202 Identities=20% Similarity=0.280 Sum_probs=164.9
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC---CCC--CceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQP--SSGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl---~~p--~~G~i~~~~~---------- 118 (266)
++|+++|+++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.+++.
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5799999999995 45699999999999999999999999999999999997 455 5899987763
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++.. ..... ..+.+.++++.+++.+ ...++++.+||||||||++|
T Consensus 81 ~~~~~i~~v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 81 ELRKNVGMVFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHhhheEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 148999998632 11 244444321 11111 2345678889898853 23567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~~ 233 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV-EYDDTKKIF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999998888764 468999999999999999999999999996 678877764
No 166
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-45 Score=315.17 Aligned_cols=200 Identities=26% Similarity=0.347 Sum_probs=166.0
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q 126 (266)
|.++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 46899999995 457999999999999999999999999999999999999999999998764 35899999
Q ss_pred cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++... ...+..+++... .... ...++.++++.+++.+ ..++.+.+||+||+||++|||||+.+|++|||||
T Consensus 80 ~~~~~--~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 80 NYALF--PHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ccccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 86422 122344333211 1111 2346678899999974 5677889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+|||+.++..+.+.+.++ +.|||++||+++++..+||++++|++|++. ..|+.+++.
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~-~~~~~~~~~ 219 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ-QIGTPEEIY 219 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHH
Confidence 99999999999998877643 579999999999999999999999999996 567776654
No 167
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-45 Score=323.05 Aligned_cols=204 Identities=21% Similarity=0.271 Sum_probs=166.3
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 118 (266)
+.++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 36 ~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 567899999999995 4569999999999999999999999999999999999987 68999988653
Q ss_pred -----eeEEEEeccccCCCCCCCcHHHHHHHh-----CCCCcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC-----FPGVPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++... ......+++.++++.+++.. ...++++.+||||||||++|
T Consensus 115 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 115 PVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 248999998632 11 2444443211 11112446778899998842 23567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEE-EEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW-VVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~-~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|+||||||||++||+.++..+.+.|+++ +.|||++|||++++..+||+++ +|++|+++ ..|+.+++.
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~~ 268 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV-EFDDTDKIF 268 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHHH
Confidence 99999999999999999999999999998888765 4699999999999999999975 57999996 567776653
No 168
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=322.22 Aligned_cols=204 Identities=28% Similarity=0.352 Sum_probs=166.0
Q ss_pred CCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 53 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
.++|+++|+++.|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 4579999999999643 35899999999999999999999999999999999999999999998774 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++...+ ...+...++... .... ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus 85 i~~v~q~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPDNQF-VGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-RADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChHHhc-ccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863111 112222222111 0111 1245678899999974 5678889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+.+.|.+. +.|||+|||+++++.. ||++++|++|+++ ..|+.+++.
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~~~ 230 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVY-KEGTPTEIF 230 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999999988887653 5699999999999985 9999999999996 568877653
No 169
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-45 Score=312.08 Aligned_cols=191 Identities=24% Similarity=0.344 Sum_probs=159.3
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEEE
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAV 123 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~~ 123 (266)
++++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 8 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 456899999999995 4569999999999999999999999999999999999999999999988742 3899
Q ss_pred EeccccCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++|.+.. ....+..+++.. .......+.+.++++.+++.+ ..++++.+||||||||++||||++.+|++|||||
T Consensus 87 ~~q~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHLPGL--KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecCccc--ccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9987532 222244443321 111123456678899999974 4678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 201 PSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
||++||+.+++.+.+.+.+. +.|||++|||.+++..+||++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999988887653 67999999999999999999999864
No 170
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.8e-45 Score=312.94 Aligned_cols=190 Identities=28% Similarity=0.447 Sum_probs=157.5
Q ss_pred EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
|+++|+++.|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 7899999999642 46899999999999999999999999999999999999999999998774 25899
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----------CCCCCChHHHHHHHHHHHHccC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGqkqRv~lAral~~~ 192 (266)
++|++.. +. .+..+++...........+.++++.+++.+. .++ ++.+||||||||++|||||+.+
T Consensus 83 ~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 83 VPQDVTL-FY--GTLRDNITLGAPLADDERILRAAELAGVTDF-VNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred eCCCCcc-cc--chHHHHhhcCCCCCCHHHHHHHHHHcCcHHH-HHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 9998632 12 2455544322112234566778888888643 333 3469999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|++|||||||+|||+.++..+.+.|.++. .|||++|||++++ .+||++++|++|+++
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence 99999999999999999999999887653 5999999999987 599999999999986
No 171
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-45 Score=319.66 Aligned_cols=203 Identities=19% Similarity=0.278 Sum_probs=166.0
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--C---CceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~--------- 118 (266)
.++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.+++.
T Consensus 10 ~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 10 QEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 46899999999995 4569999999999999999999999999999999999987 3 6899987653
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCC-Cc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-VP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+..+++.. .... .. .+++.++++.+++.+ ...++++.+|||||+||++
T Consensus 89 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 89 VELRKNIGMVFQKGNP-FP--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred HHHhhceEEEecCCcc-cc--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 248999998632 12 244444321 1111 11 234667788888753 2346788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 242 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV-ECNDTNKMF 242 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999999998888765 469999999999999999999999999996 578888764
No 172
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-45 Score=319.18 Aligned_cols=202 Identities=20% Similarity=0.212 Sum_probs=164.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-----------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------- 118 (266)
+|+++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 6899999999954 5699999999999999999999999999999999999874 7999998663
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. ....+..+++.. .... ...+.+.++++.+++.+ ...++++.+|||||+||++||
T Consensus 83 ~~~~i~~~~q~~~~--~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 83 VRRTIGMVFQRPNP--FPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HhcceEEEcccccc--CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 248999997532 222344444321 1111 11245677888888742 345678899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe------CCeEEecCCChhH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS------EGKATPFHGTFHD 258 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~ 258 (266)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||+|||+++++..+||++++|+ +|+++ ..|+.++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~~ 239 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTEK 239 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE-ecCCHHH
Confidence 9999999999999999999999999998888754 4699999999999999999999997 79996 5788777
Q ss_pred HH
Q 024529 259 YK 260 (266)
Q Consensus 259 ~~ 260 (266)
+.
T Consensus 240 ~~ 241 (258)
T PRK14241 240 IF 241 (258)
T ss_pred HH
Confidence 63
No 173
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=351.48 Aligned_cols=201 Identities=22% Similarity=0.252 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 5799999999995 456899999999999999999999999999999999999999999998763 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhC------CC-------CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCF------PG-------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra 188 (266)
+|++|++.. ....+..+++.... .. ...+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus 83 ~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 83 GIIYQELSV--IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred EEEeecccc--cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHH
Confidence 999998632 22233444432110 01 01245778899999974 5678999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|+.+|++|||||||+|||+.++..+.+.|++. +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV 232 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence 99999999999999999999999988877653 579999999999999999999999999996 67887765
No 174
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-45 Score=321.46 Aligned_cols=204 Identities=22% Similarity=0.251 Sum_probs=164.9
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 118 (266)
..++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 10 ~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 356899999999995 4568999999999999999999999999999999999987 68999988763
Q ss_pred -----eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++... .... ..+++.++++.+++.. ...++++.+||||||||++|
T Consensus 89 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 248999998632 11 2444444211 1111 1345667788887632 23567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC-----------CeEEec
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE-----------GKATPF 252 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~-----------G~i~~~ 252 (266)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|++ |+++ .
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~-~ 244 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV-E 244 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE-E
Confidence 99999999999999999999999999998888764 46899999999999999999999996 4565 5
Q ss_pred CCChhHHH
Q 024529 253 HGTFHDYK 260 (266)
Q Consensus 253 ~g~~~~~~ 260 (266)
.|+++++.
T Consensus 245 ~~~~~~~~ 252 (269)
T PRK14259 245 FNETKKIF 252 (269)
T ss_pred eCCHHHHH
Confidence 68877763
No 175
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=317.38 Aligned_cols=203 Identities=20% Similarity=0.230 Sum_probs=165.9
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------- 118 (266)
+++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.+++.
T Consensus 2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 36899999999995 45689999999999999999999999999999999999875 7999988653
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+..+++.. ..... ..+++.++++.+++.+ ...++++.+||||||||++
T Consensus 81 ~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 81 VELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred HHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 248999998642 22 344444321 11111 1245667888888742 2356788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 234 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI-EFNKTEKIF 234 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE-EeCCHHHHh
Confidence 999999999999999999999999999998888764 469999999999999999999999999997 567777653
No 176
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-45 Score=307.88 Aligned_cols=204 Identities=24% Similarity=0.361 Sum_probs=169.4
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
++|+++||+..|+ ...+|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.+.|+ ..+
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 5899999999994 567999999999999999999999999999999999999999999999875 359
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh-C--CC-Cc-HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC-F--PG-VP-EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~-~--~~-~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
+|+||.... ....++.+++... + +. .. ...++++.+.|-.-.+..+++.++|||||+|.++|||||+.+|++|
T Consensus 81 ~~VPegR~i--F~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 81 AYVPEGRRI--FPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred EeCcccccc--hhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 999997532 2334455554321 1 11 11 1125667777754445677899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||||||.||-|.-.+++.+.+++. +.||++|.++..++..++||.++|++|+++ +.|+.+++..
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 999999999999888888777653 349999999999999999999999999997 8999888754
No 177
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.7e-46 Score=298.57 Aligned_cols=200 Identities=24% Similarity=0.343 Sum_probs=164.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------eEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~i~~~~ 125 (266)
|+.+++|++.|+ .. -=.++++|+.||+++|+|||||||||||++|+|++.|.+|+|++++.. -++++|
T Consensus 1 ~l~L~~V~~~y~-~~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSYG-HL--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEeeC-cc--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence 467899999994 32 246799999999999999999999999999999999999999998753 377888
Q ss_pred ccccCCCCCCCcHHHHHHHh-CC-----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMRC-FP-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++.. ....++..++... .+ ...++++..++.++|+.+. .++.+.+|||||||||+|||+|+++-+|||||
T Consensus 78 QEnNL--FaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~-~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 78 QENNL--FAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGF-LKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hcccc--chhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhH-hhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 87532 2222333333211 11 2346778999999999864 56788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||||+|||.-+.++...+.+ .+.|++||||.++.+.+++++++++++|+|. +.|+.+++..
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~ 219 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLS 219 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhc
Confidence 99999999988887776653 3579999999999999999999999999996 7898887743
No 178
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-45 Score=318.20 Aligned_cols=202 Identities=20% Similarity=0.290 Sum_probs=164.9
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------- 118 (266)
++|+++|++++|+ .+.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4799999999995 4579999999999999999999999999999999999987 47999987763
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++... .... ..+++.++++.+++.. ...++++.+|||||+||++|
T Consensus 82 ~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 82 ELRKEVGMVFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HhhccEEEEecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 248999998632 22 3444443211 1111 1245677888888842 23467889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 234 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI-EAGPTEEMF 234 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999998888765 569999999999999999999999999996 467776653
No 179
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=316.99 Aligned_cols=201 Identities=21% Similarity=0.274 Sum_probs=163.4
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-----------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------- 118 (266)
.|+++||++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999995 45699999999999999999999999999999999999763 6999988753
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. +. .+...++.. ..... ..+.+.++++.+++.+ ...++++.+|||||+||++||
T Consensus 82 ~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 82 LRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 248999998532 22 344444321 11111 2345667788887642 234678899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++.+..+||++++|++|+++ ..|+.+++.
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 233 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV-EFGDTVDLF 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999998888764 469999999999999999999999999997 567777654
No 180
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5e-45 Score=310.15 Aligned_cols=193 Identities=26% Similarity=0.368 Sum_probs=159.9
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q 126 (266)
++++|+++.|+ . .+.|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 46899999995 2 468999999999999999999999999999999999999999998764 24899999
Q ss_pred cccCCCCCCCcHHHHHHHhC-C--C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMRCF-P--G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~-~--~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++. +....+..+++.... . . ....++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||
T Consensus 78 ~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 78 ENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred cCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 222234444442110 0 1 12456778999999964 5678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~ 255 (266)
||++||+.++..+.+.|.+. +.|||+|||+.+++..+||++++|++|++. ..|.
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~-~~~~ 212 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK-VVSD 212 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE-EecC
Confidence 99999999999888877653 569999999999999999999999999996 3443
No 181
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-45 Score=317.24 Aligned_cols=202 Identities=22% Similarity=0.276 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------- 118 (266)
++|+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3799999999995 45789999999999999999999999999999999999874 8999987762
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCC-C----cHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-V----PEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++.. .... . ..+.+.++++.+++... ..++++.+|||||+||++|
T Consensus 81 ~~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 81 EYRKKVGMVFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HhhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 248999998642 22 344444321 1111 1 12346677888888532 3567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI-EYGPTREIV 233 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence 99999999999999999999999999998888764 469999999999999999999999999996 568877764
No 182
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.1e-45 Score=358.73 Aligned_cols=203 Identities=23% Similarity=0.383 Sum_probs=172.8
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
..|+++||+|+|++++.+|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 35999999999975567999999999999999999999999999999999999999999999884 3699
Q ss_pred EEeccccCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHcc
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~ 191 (266)
|++|++.. +..+..+++... .+..+++++.++++..++.+... ......||||||||++|||||++
T Consensus 552 ~v~Q~~~l---f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 552 YLPQEPYI---FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred EEecCcee---hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 99999752 345666666543 23466778888888887754322 12346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF-QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|++|||||||++||+.+.+.+.+.|.+. +.|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.+
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~-~~G~~~~L~~ 697 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKII-EQGSHDELLD 697 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999988775 579999999999886 69999999999997 5799888754
No 183
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-45 Score=320.63 Aligned_cols=200 Identities=27% Similarity=0.408 Sum_probs=165.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC--------ceEEEEcCee-------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--------SGTVFRSAKV------- 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--------~G~i~~~~~~------- 119 (266)
||+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.+++..
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 589999999995 457999999999999999999999999999999999999998 9999987631
Q ss_pred ----eEEEEeccccCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529 120 ----RIAVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 120 ----~i~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l 185 (266)
.++|++|++...+ ..+..+++... .. ....+.+.++++.+++.. ..++++.+|||||+|||+|
T Consensus 80 ~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 80 RLARLRAVLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHhhcEEecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHH
Confidence 3789999853222 23444444221 00 012345778899999974 4578899999999999999
Q ss_pred HHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEec
Q 024529 186 AKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPF 252 (266)
Q Consensus 186 Aral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 252 (266)
||||+ .+|++|||||||++||+.++..+.+.+.++ +.|||+||||++++..+||++++|++|+++ .
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~ 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV-A 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-E
Confidence 99999 599999999999999999999998877643 579999999999999999999999999996 5
Q ss_pred CCChhHH
Q 024529 253 HGTFHDY 259 (266)
Q Consensus 253 ~g~~~~~ 259 (266)
.|+.+++
T Consensus 236 ~g~~~~~ 242 (272)
T PRK13547 236 HGAPADV 242 (272)
T ss_pred ecCHHHH
Confidence 6887765
No 184
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=9.6e-45 Score=356.65 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=175.6
Q ss_pred CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++||+|+|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 35999999999964 356999999999999999999999999999999999999999999999874 369
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++.. +..+..+++....+..+++++.++++.+++.+.... .....||||||||++|||||+.
T Consensus 542 ~~v~Q~~~l---f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 542 GYVPQDPRL---FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred EEECCChhh---hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999742 345666776544344678888888888887543322 2346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
+|++||||||||+||+.+...+.+.+.+. +.|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.+...
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~-e~G~~~eLl~~~~ 691 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV-ADGPKDQVLEALR 691 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEE-eeCCHHHHHHHhh
Confidence 99999999999999999999999998765 579999999999886 69999999999997 5799999876543
No 185
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.5e-45 Score=316.02 Aligned_cols=201 Identities=22% Similarity=0.373 Sum_probs=160.2
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcCe------------ee
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~~------------~~ 120 (266)
+|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++. ..
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 588999999995 456999999999999999999999999999999999995 699999988763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHH---H---hCCC---Cc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHH
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMM---R---CFPG---VP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFA 186 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~---~---~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~lA 186 (266)
++|++|++...... +...+.. . .... .. .+.+.+.++.+++.+...++++. +||||||||++||
T Consensus 80 i~~~~q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGV--SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccch--hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 88999886322111 1111110 0 0000 11 23456788888986445566665 7999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChhHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|||+.+|++|||||||++||+.++..+.+.+++ .+.|||++|||++++..+ ||++++|++|+++ +.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHHHH
Confidence 999999999999999999999999998886654 357999999999999887 8999999999996 67887744
No 186
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-45 Score=350.82 Aligned_cols=205 Identities=20% Similarity=0.327 Sum_probs=166.2
Q ss_pred CcEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-------
Q 024529 54 PIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~------- 118 (266)
++|+++|+++.|++ ...+|+++||+|.+||+++|+||||||||||+|+|+|+++| ++|+|.+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 57999999999953 24699999999999999999999999999999999999986 7999987652
Q ss_pred --------eeEEEEeccccCCCCCCCcHHHHHH---HhCCCC----cHHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 024529 119 --------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGV----PEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS 181 (266)
Q Consensus 119 --------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq 181 (266)
..++|++|++...+....+....+. ...... ..+++.++++.+++.+. ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 2489999986321222222222221 111111 23567889999999642 346789999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+|++|++|+++ +.|+++
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~ 242 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAA 242 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHH
Confidence 99999999999999999999999999999999888765 3679999999999999999999999999986 567776
Q ss_pred HH
Q 024529 258 DY 259 (266)
Q Consensus 258 ~~ 259 (266)
++
T Consensus 243 ~~ 244 (529)
T PRK15134 243 TL 244 (529)
T ss_pred HH
Confidence 65
No 187
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-45 Score=316.48 Aligned_cols=202 Identities=22% Similarity=0.308 Sum_probs=164.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CC---CceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QP---SSGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p---~~G~i~~~~~---------- 118 (266)
++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|.+++.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4799999999995 456999999999999999999999999999999999985 46 5999988763
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++... .... ..+++.++++.+++.. ...++++.+||||||||++|
T Consensus 83 ~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 83 DLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 248999998632 22 3444443211 1111 1245667788888742 23467889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI-EYNDTKQMF 235 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999998888764 469999999999999999999999999996 568777663
No 188
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=320.87 Aligned_cols=205 Identities=19% Similarity=0.284 Sum_probs=164.6
Q ss_pred CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe-------
Q 024529 51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 118 (266)
Q Consensus 51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------- 118 (266)
|+.++|+++|+++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++.
T Consensus 20 ~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 20 PKKVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CCceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 3456899999999995 4569999999999999999999999999999999999987 69999988763
Q ss_pred ------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-c----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 024529 119 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR 182 (266)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqR 182 (266)
..++|++|++.. +. .+..+++... .... . ...+.+.++.+++.. ...++++.+||||||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 248999998632 11 2444444311 1111 1 223455666664321 23467889999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~ 254 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN-EYDDTDKIF 254 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999999999998888654 469999999999999999999999999996 567777653
No 189
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=356.29 Aligned_cols=208 Identities=19% Similarity=0.301 Sum_probs=168.8
Q ss_pred CCCcEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------
Q 024529 52 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------- 118 (266)
.+++|+++|+++.|++ ...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 4568999999999953 236899999999999999999999999999999999999999999986541
Q ss_pred ---------------eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc--ccccCCCCC
Q 024529 119 ---------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG--NLALQPMYT 174 (266)
Q Consensus 119 ---------------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~--~~~~~~~~~ 174 (266)
..++|++|++...+....++.+++.. ..... ..+++.++++.+|+.+ ...++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 24899999863222222344443321 11111 1356778899999963 245788999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 175 LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|||||||||+|||||+.+|+||||||||++||+.++.++.+.+++ .+.|||+||||++++..+||+|++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 999999999999999999999999999999999998887776654 2679999999999999999999999999997
Q ss_pred ecCCChhHHH
Q 024529 251 PFHGTFHDYK 260 (266)
Q Consensus 251 ~~~g~~~~~~ 260 (266)
..|+++++.
T Consensus 249 -~~g~~~~~~ 257 (623)
T PRK10261 249 -ETGSVEQIF 257 (623)
T ss_pred -ccCCHHHhh
Confidence 578877663
No 190
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-45 Score=319.05 Aligned_cols=203 Identities=20% Similarity=0.243 Sum_probs=166.3
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------- 118 (266)
.++|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 45899999999995 4679999999999999999999999999999999999986 58999987663
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+..+++... .... ...++.++++.+++.+ ...++++.+|||||+||++
T Consensus 97 ~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 97 YEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred HHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 248999998532 11 2454444321 1111 1245667788888842 2356788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI-EYDKTRNIF 250 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999999999988887754 468999999999999999999999999997 568877763
No 191
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-45 Score=322.55 Aligned_cols=203 Identities=28% Similarity=0.380 Sum_probs=167.0
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc---eEEEEcCe-----------
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFRSAK----------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~~----------- 118 (266)
.+|+++|+++.|++. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|.+++.
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 479999999999642 468999999999999999999999999999999999999998 89988763
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
..++|++|++...+ ...+..+++.. ...... .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+
T Consensus 84 ~~ig~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 84 EKVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-YIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred hheEEEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 24899999862111 22344444421 111222 245778899999974 56788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|++|||||||+|||+.++..+.+.|.+. +.|||++||+++++. .||++++|++|+++ ..|+.+++.
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 231 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLL-AQGSPVEIF 231 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999888887653 569999999999995 79999999999997 578877753
No 192
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-46 Score=337.14 Aligned_cols=264 Identities=49% Similarity=0.798 Sum_probs=241.0
Q ss_pred ChHHHHHHhhhhhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCCC-cceeeceEEE
Q 024529 1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-ILFKNLNFGI 79 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~-~~l~~vsl~i 79 (266)
+|.||++|++++++++.+++|++.++++.....+..++.....||.+.....+|.+++.+|+|.|..+. .++.++++++
T Consensus 308 ~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~ 387 (582)
T KOG0062|consen 308 LQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDR 387 (582)
T ss_pred HHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCcc
Confidence 478999999999999999999999999887766665555555666644445678999999999997665 6899999999
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (266)
+.-+.++++|+||+||||+++++.|-..|..|.+...++.+++|..|+..+.++...+.++.+...+++..+++++..+.
T Consensus 388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~ 467 (582)
T KOG0062|consen 388 ESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLG 467 (582)
T ss_pred chhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777777778888888888889999999999
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcC
Q 024529 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d 239 (266)
.||++.++..+++..||||||-||++|.+...+|.+|+||||||+||.++..++.+.|+.+++.||+||||.+|+..+|+
T Consensus 468 ~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~ 547 (582)
T KOG0062|consen 468 SFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCK 547 (582)
T ss_pred hcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCc
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEecCCChhHHHHHHh
Q 024529 240 ELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 240 ~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
.+|+.++|++..++|..++|.+...
T Consensus 548 E~Wvve~g~vt~ieg~~~~yKkl~~ 572 (582)
T KOG0062|consen 548 ELWVVEDGKVTPIEGGIDKYKKLLG 572 (582)
T ss_pred eeEEEcCCcEEeeeccHHHHHHHHH
Confidence 9999999999999999999876543
No 193
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-45 Score=311.83 Aligned_cols=187 Identities=25% Similarity=0.327 Sum_probs=154.3
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------ee
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR 120 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~ 120 (266)
+++ ||+++|++ ..+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 445 99999964 434 99999999 999999999999999999999999999999987663 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
++|++|++.. ....+..+++..... ....+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|
T Consensus 77 i~~~~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 77 IGLVFQQYAL--FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred EEEEecCCcc--CCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-HhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8999998632 222344444321111 112346788999999974 457888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
||||||+|||+.+++.+.+.+.+. +.|||++|||.+++..+||++++|++|+++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999988877643 579999999999999999999999999986
No 194
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-45 Score=315.97 Aligned_cols=202 Identities=19% Similarity=0.249 Sum_probs=164.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--C---CceEEEEcCe-----------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK----------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~----------- 118 (266)
.|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.+++.
T Consensus 4 ~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 4 KVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 589999999995 4569999999999999999999999999999999999986 4 6899987763
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. ....+..+++.. ..... ..+++.++++.+++.. ...++++.+|||||+||++||
T Consensus 83 ~~~~i~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 83 IRRRVGMVFQKPNP--FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred hhccEEEEecCCCC--CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 238999998532 222344443321 11111 1245677888898853 234567899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV-ECGETKKIF 235 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999998888765 469999999999999999999999999996 567777653
No 195
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.3e-46 Score=351.43 Aligned_cols=201 Identities=20% Similarity=0.257 Sum_probs=166.6
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
++|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999995 457999999999999999999999999999999999999999999998763 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhC------CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCF------PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++. +....++.+++.... ... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 82 GIIHQELN--LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEEcchh--ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHhc
Confidence 99999853 222334544432210 111 1245778899999974 4578899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
+|++|||||||++||+.++.++.+.+.+ .+.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI-AEREVADL 228 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EecCcCcC
Confidence 9999999999999999999998877654 3569999999999999999999999999996 45665543
No 196
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=317.09 Aligned_cols=202 Identities=21% Similarity=0.309 Sum_probs=162.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-----ceEEEEcCe-----------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~----------- 118 (266)
+|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 689999999995 457999999999999999999999999999999999999874 899987652
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-c----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. ....+..+++... .... . .+.+.+.++.+++.. ...++++.+|||||+||++||
T Consensus 83 ~~~~i~~~~q~~~~--~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 83 MRRRVGMVFQKPNP--FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred hhceeEEEeccCcc--CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 258999998642 2223444444211 1111 1 123445566666531 234678899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.|++. +.|||++||+.+++..+||++++|++|+++ ..|+.+++.
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV-EHGPTDQLF 235 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999998888764 479999999999999999999999999996 578877663
No 197
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-45 Score=320.50 Aligned_cols=204 Identities=21% Similarity=0.317 Sum_probs=169.6
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-C----CceEEEEcCe--------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-P----SSGTVFRSAK-------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p----~~G~i~~~~~-------- 118 (266)
+|+++||+..|... ..+++||||+|++||++||+|.|||||||+.+.|+|+++ | .+|+|.++++
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 37899999999642 358999999999999999999999999999999999997 3 5789988774
Q ss_pred -------eeEEEEeccccCCCCCCCcHHHHHH---HhCCC-----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 024529 119 -------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG-----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS 181 (266)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq 181 (266)
..|+++||++...++...+.-..+. ..... ...+++.++|+.+|+.+. ..+.++.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2699999998766655544322221 11111 124578899999999864 567889999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
||.||.||+.+|++||.||||++||+..+.++++.|++ .+.++|+||||+..+..+||||+||..|+++ ..|+.+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV-E~g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV-EEGPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE-EeCCHH
Confidence 99999999999999999999999999999988887754 4678999999999999999999999999997 467776
Q ss_pred HH
Q 024529 258 DY 259 (266)
Q Consensus 258 ~~ 259 (266)
++
T Consensus 240 ~i 241 (316)
T COG0444 240 EI 241 (316)
T ss_pred HH
Confidence 65
No 198
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=9.3e-45 Score=350.29 Aligned_cols=202 Identities=24% Similarity=0.359 Sum_probs=170.2
Q ss_pred cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
.++++|++|+|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 59999999999753 57999999999999999999999999999999999999999999999874 3589
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~ 191 (266)
|++|++.. +..+..+++....+ ..+++++.++++.+++.+.... .....||||||||++|||||++
T Consensus 421 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVHL---FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCcee---ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 99999742 34566666643322 3567888888888886543221 2235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|++||||||||+||+.+...+++.+.+. +.|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~-e~g~~~~l~~ 567 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIV-ERGTHAELLA 567 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999998775 479999999998876 59999999999997 5788777643
No 199
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-45 Score=321.74 Aligned_cols=204 Identities=23% Similarity=0.272 Sum_probs=165.9
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 118 (266)
+.++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 456899999999995 4568999999999999999999999999999999999864 49999988652
Q ss_pred -----eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 024529 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV 183 (266)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv 183 (266)
..++|++|++.. +. .+..+++... .... ..+.+.++++.+++.. ...++++.+|||||+||+
T Consensus 115 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 258999998632 11 2555444311 1111 1234567788888741 234678899999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||.+++..+||++++|++|+++ ..|+.+++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~~ 269 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQLF 269 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999999999888765 358999999999999999999999999996 578877654
No 200
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.6e-45 Score=348.89 Aligned_cols=208 Identities=25% Similarity=0.370 Sum_probs=170.5
Q ss_pred CCCcEEEEeeEEEcCC----CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc-Ce--------
Q 024529 52 GPPIISFSDASFGYPG----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK-------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-~~-------- 118 (266)
+.++|+++|+++.|++ ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ +.
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 3568999999999952 2468999999999999999999999999999999999999999999884 21
Q ss_pred ---------eeEEEEeccccCCCCCCCcHHHHHHHh--C--CC-CcHHHHHHHHHhcCCCcc----cccCCCCCCChHHH
Q 024529 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRC--F--PG-VPEQKLRAHLGSFGVTGN----LALQPMYTLSGGQK 180 (266)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~~~~~l~~~~l~~~----~~~~~~~~LSgGqk 180 (266)
..++|++|++. +....+..+++... . .. ...+++.++++.+++... ..++++.+||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred chhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 24899999853 22233444444321 1 11 123457788999999641 45789999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 256 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 256 (266)
|||+|||||+.+|+||||||||++||+.++..+++.|.+ .+.|||+||||++++..+||++++|++|+++ ..|++
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~ 512 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDP 512 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCH
Confidence 999999999999999999999999999999999888753 3679999999999999999999999999996 67888
Q ss_pred hHHHHH
Q 024529 257 HDYKKM 262 (266)
Q Consensus 257 ~~~~~~ 262 (266)
+++.+.
T Consensus 513 ~~~~~~ 518 (520)
T TIGR03269 513 EEIVEE 518 (520)
T ss_pred HHHHhh
Confidence 877554
No 201
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.7e-44 Score=349.14 Aligned_cols=201 Identities=23% Similarity=0.369 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
..++++|++|.|++++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975567999999999999999999999999999999999999999999999874 3599
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++.. +..+..+++.... ..+++++.++++.+|+.+.... .....||||||||++|||||+.+
T Consensus 419 ~v~Q~~~l---F~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 419 MVQQDPVV---LADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred EEccCCcc---ccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999752 3446666665433 4567888899998887643221 23467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|+||||||||++||+.+.+.+.+.+.+. ++|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~-~~G~~~~L~ 562 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAV-EQGTHQQLL 562 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999999999988765 579999999999887 59999999999997 578888764
No 202
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7e-45 Score=314.10 Aligned_cols=200 Identities=26% Similarity=0.408 Sum_probs=157.7
Q ss_pred EEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 56 ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 56 l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
++++|+++.|++ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 246899999999999999999999999999999999999999999998773 2489
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc-----------CCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
|++|++.. + ..+..+++..........++.+.++.+ ++.. ..++++.+|||||+||++|||||+.
T Consensus 81 ~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 81 LVSQEPVL-F--DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDT-LVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred EECCchhh-h--hhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccce-eeccCCccCCHHHHHHHHHHHHHhc
Confidence 99998632 1 124444443211111222333333333 3322 2356678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|++|||||||++||+.++..+.+.|.+. +.|||++||+++++. +||++++|++|+++ +.|+.+++..
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~ 226 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV-EQGTHDELMA 226 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE-EeCCHHHHhh
Confidence 99999999999999999999998888654 468999999999997 89999999999996 6788777643
No 203
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1e-44 Score=315.61 Aligned_cols=201 Identities=22% Similarity=0.379 Sum_probs=161.1
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCee-----------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV----------- 119 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~----------- 119 (266)
+++|+++|+++.|+ +..+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.+++..
T Consensus 5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 45799999999995 45699999999999999999999999999999999998 58999999886631
Q ss_pred -eEEEEeccccCCCCCCCcHHHHHHHhC---------CCCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHH
Q 024529 120 -RIAVFSQHHVDGLDLSSNPLLYMMRCF---------PGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVA 184 (266)
Q Consensus 120 -~i~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~ 184 (266)
.++|++|++... ...+...++.... .... .+++.++++.+++.+...++++. .|||||+||++
T Consensus 84 ~~~~~~~q~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 84 LGIFLAFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred eeEEEEecccccc--ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 367888875321 1122222221100 0011 24567789999996434556776 59999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChh
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 257 (266)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+ ||++++|++|+++ +.|+++
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE-EecChh
Confidence 999999999999999999999999999998888654 57999999999999876 8999999999996 678776
No 204
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-45 Score=348.50 Aligned_cols=201 Identities=18% Similarity=0.245 Sum_probs=167.2
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCe------------e
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------V 119 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~------------~ 119 (266)
++|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|.+++. .
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5799999999995 45799999999999999999999999999999999999996 8999998763 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhC-----CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCF-----PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
.++|++|++. +....+..+++.... ... ..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus 83 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 83 GIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred CeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHHHh
Confidence 4899999863 222334444432110 011 1245788999999964 567899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ +.|+.+++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 230 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI-GTRPAAGM 230 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe-eecccccC
Confidence 999999999999999999999988877653 569999999999999999999999999986 56766544
No 205
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-45 Score=312.87 Aligned_cols=200 Identities=25% Similarity=0.453 Sum_probs=160.1
Q ss_pred EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
|+++|+++.|++. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999543 26899999999999999999999999999999999999999999998763 24899
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHH---------HHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL---------RAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
++|++.. + ..+..+++...........+ .+.++.+ ++.. ..++++.+|||||+||++|||||+.+
T Consensus 81 ~~q~~~~-~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDVFL-F--NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT-VIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCCee-c--cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcce-eeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 9998632 1 23455544322111122222 2334444 4443 34567899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|++|||||||++||+.++..+.+.|.+. +.|||++|||++++.. ||++++|++|+++ ..|+.+++..
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~ 225 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELLA 225 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHHH
Confidence 9999999999999999999998888764 5699999999999976 9999999999996 5788877754
No 206
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.3e-45 Score=333.32 Aligned_cols=194 Identities=22% Similarity=0.254 Sum_probs=160.3
Q ss_pred eeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeEEEE
Q 024529 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVF 124 (266)
Q Consensus 60 ~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~ 124 (266)
|++++|+ +.. + ++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|+
T Consensus 4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 8999995 333 4 999999999999999999999999999999999999999987653 248999
Q ss_pred eccccCCCCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 125 SQHHVDGLDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
+|++.. ....+..+++..... . ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 81 FQEARL--FPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred ecCCcc--CCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 998632 222344444322111 1 11345788999999974 5678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||++||+.++..+.+.|++. +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 220 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA-AAGPIAEVW 220 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-EECCHHHHh
Confidence 99999999999888877653 569999999999999999999999999996 568877764
No 207
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=319.31 Aligned_cols=203 Identities=24% Similarity=0.317 Sum_probs=166.1
Q ss_pred CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
++|+++|++++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 379999999999632 35899999999999999999999999999999999999999999998763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++... ....+..+++.. ...... .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus 83 i~~v~q~~~~~-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 83 IGMVFQNPDNQ-FVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-FKTREPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred eEEEEECHHHh-hccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 89999985211 112234444321 111111 245678899999964 5678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+.+.+.+. +.|||++|||++++. .||++++|++|+++ ..|+.+++.
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII-KEAAPSELF 228 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999988877543 679999999999997 69999999999996 568877764
No 208
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=312.28 Aligned_cols=200 Identities=27% Similarity=0.422 Sum_probs=158.4
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 124 (266)
|+++|++++|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 478999999964456899999999999999999999999999999999999999999998773 248999
Q ss_pred eccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
+|++.. + ..+..+++...........+...++.+++.+ ...++++.+|||||+||++|||||+.+|+
T Consensus 81 ~q~~~~-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 81 PQDTVL-F--NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred CCCChh-h--cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 998632 1 2345554432211222333333333333321 12345678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||++||+.++..+.+.|.+. +.|||++||+.+++.. ||++++|++|+++ ..|+.+++.
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~-~~~~~~~~~ 223 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIV-ERGTHEELL 223 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEE-eeCCHHHHh
Confidence 99999999999999999988888654 5699999999999975 9999999999996 567777664
No 209
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=318.73 Aligned_cols=205 Identities=20% Similarity=0.261 Sum_probs=165.5
Q ss_pred CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-------
Q 024529 51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------- 118 (266)
Q Consensus 51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~------- 118 (266)
+..++|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 16 ~~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 16 PDHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 3456899999999995 45699999999999999999999999999999999999863 6899987652
Q ss_pred ------eeEEEEeccccCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+..+++... ... ...+.+.++++.+++.. ...++++.+|||||+|||+
T Consensus 95 ~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNP-FP--KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred hhHHHhhcEEEEccCCcc-cc--ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence 258999998632 11 2444443221 111 12334566777777631 2346788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe---------CCeEEecC
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS---------EGKATPFH 253 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~---------~G~i~~~~ 253 (266)
|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++..+||++++|+ +|+++ ..
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~-~~ 250 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV-EF 250 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE-Ee
Confidence 999999999999999999999999999999988765 4689999999999999999999997 79997 56
Q ss_pred CChhHHH
Q 024529 254 GTFHDYK 260 (266)
Q Consensus 254 g~~~~~~ 260 (266)
|+.+++.
T Consensus 251 g~~~~~~ 257 (274)
T PRK14265 251 SPTEQMF 257 (274)
T ss_pred CCHHHHH
Confidence 8887764
No 210
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-44 Score=312.13 Aligned_cols=199 Identities=26% Similarity=0.322 Sum_probs=164.9
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q 126 (266)
|+++|+++.|+ +. +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWK-EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeC-Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 46899999995 33 799999999999999999999999999999999999999999998763 25899999
Q ss_pred cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++.. ....+..+++... .... ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++++|||
T Consensus 79 ~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 79 NYAL--FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH-LLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred cCcc--CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 8532 2222344333211 1111 2345678899999974 5678889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||++||+.++..+.+.+.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 218 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI-QVGKPEEVF 218 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence 99999999999998887653 579999999999999999999999999997 567776654
No 211
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.4e-45 Score=304.46 Aligned_cols=173 Identities=33% Similarity=0.562 Sum_probs=143.0
Q ss_pred EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCC
Q 024529 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 136 (266)
+++|+++.|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++... ...
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~---------~~~---- 66 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL---------ASL---- 66 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---------CcC----
Confidence 47899999954 5699999999999999999999999999999999999999999998776310 000
Q ss_pred cHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 024529 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 216 (266)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~ 216 (266)
.... ..... ..+.++++.+++.+ ..++++.+|||||+||++|||||+.+|+++||||||++||+.++..+.+.
T Consensus 67 ~~~~-~~~~i-----~~~~q~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 67 SPKE-LARKI-----AYVPQALELLGLAH-LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred CHHH-HHHHH-----hHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 0100 00000 01112788899974 45678899999999999999999999999999999999999999988887
Q ss_pred Hhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 217 LVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 217 l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+.+. +.|+|++||+++++..+||++++|++|++.
T Consensus 140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7653 569999999999998999999999999986
No 212
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=316.61 Aligned_cols=204 Identities=19% Similarity=0.261 Sum_probs=165.2
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC---------------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--------------- 117 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--------------- 117 (266)
.++|.++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46899999999995 56799999999999999999999999999999999999999997765443
Q ss_pred --eeeEEEEeccccCCCCCCCcHHHHHHHh---CCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 118 --KVRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 118 --~~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
+..++|++|++.. ....+..+++... ..... ...+.++++.+++.. ...++++..|||||+||++|
T Consensus 87 ~~~~~i~~~~q~~~~--~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 87 KLRKEVGMVFQQPNP--FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHhcceEEEccCCcc--CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 1348999998642 2222343333211 11111 234677888899852 23467889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|+++||||||++||+.++..+.+.|.++ +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~-~~g~~~~~~ 240 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV-EWGSSNEIF 240 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 99999999999999999999999999998888764 369999999999999999999999999997 567777664
No 213
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.3e-45 Score=308.07 Aligned_cols=186 Identities=22% Similarity=0.383 Sum_probs=155.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVF 124 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~ 124 (266)
+|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 589999999995 4568999999999999999999999999999999999999999999987642 48888
Q ss_pred eccccCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 125 SQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
+|.+. +....+..+++.. .......+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++||||||
T Consensus 80 ~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 80 GHQPG--IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG-FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred CCccc--cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 88753 2222344444321 111134567888999999964 45788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEE
Q 024529 202 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
|++||+.++..+.+.|+++ +.|||++|||.+++..+.+|++++
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999998888754 579999999999999877888776
No 214
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.8e-45 Score=349.36 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=168.6
Q ss_pred CCCcEEEEeeEEEcCC----------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---
Q 024529 52 GPPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~----------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--- 118 (266)
+.++|+++|+++.|+. ++.+|+++||+|++||+++|+||||||||||+|+|+|++ |++|+|++++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEcc
Confidence 3568999999999952 346899999999999999999999999999999999998 48999998762
Q ss_pred -----------eeEEEEeccccCCCCCCCcHHHHHHH---hCC-CC----cHHHHHHHHHhcCCCcccccCCCCCCChHH
Q 024529 119 -----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179 (266)
Q Consensus 119 -----------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 179 (266)
..++|++|++...+....++.+++.. ... .. ..+++.++++.+++.....++++.+|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 24899999862122222344443321 110 01 234677899999996334678999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529 180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255 (266)
Q Consensus 180 kqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~ 255 (266)
||||+|||||+.+|++|||||||++||+.++..+++.|.+ .+.|||+||||++++..+||++++|++|+++ ..|+
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~ 509 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGD 509 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcC
Confidence 9999999999999999999999999999999999888764 3579999999999999999999999999996 5687
Q ss_pred hhHHH
Q 024529 256 FHDYK 260 (266)
Q Consensus 256 ~~~~~ 260 (266)
.+++.
T Consensus 510 ~~~~~ 514 (529)
T PRK15134 510 CERVF 514 (529)
T ss_pred HHHHh
Confidence 77653
No 215
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=7.8e-45 Score=311.07 Aligned_cols=189 Identities=24% Similarity=0.330 Sum_probs=154.5
Q ss_pred cEEEEeeEEEcCC------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc--C---e-----
Q 024529 55 IISFSDASFGYPG------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--A---K----- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~--~---~----- 118 (266)
||+++|+++.|++ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ + .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5889999999952 1368999999999999999999999999999999999999999999886 2 1
Q ss_pred ---------eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183 (266)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv 183 (266)
..++|++|++.. ....+..+++.. ..... ..+++.++++.+++.+...++++.+|||||+||+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRV--IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEeccccc--CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 248999998632 222233333221 11111 2346778899999975445678999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEe
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVS 245 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~ 245 (266)
+|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+|||+.+++..+||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999999999999998887653 5699999999999999999998764
No 216
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=318.65 Aligned_cols=204 Identities=20% Similarity=0.335 Sum_probs=166.3
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe--------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------- 118 (266)
..++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 18 ~~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 18 AAPAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cCcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 356899999999995 46799999999999999999999999999999999999985 6999988763
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh---CCCCcH----HHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVPE----QKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+...++... ...... ..+.++++.+++... ..++.+.+|||||+||++
T Consensus 97 ~~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 97 LEFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HHHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 248999998632 22 3444443211 111122 234567888888532 245778999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||++||+.++..+.+.|.+. ..|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 250 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV-EEGPTEQLF 250 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999999998888764 469999999999999999999999999996 568877764
No 217
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=8.5e-45 Score=297.46 Aligned_cols=164 Identities=26% Similarity=0.377 Sum_probs=142.9
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (266)
|+++|+++.|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|++.. . .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~--~-~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL--P-L 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc--c-c
Confidence 478999999964456999999999999999999999999999999999999999999999888889999998631 1 2
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215 (266)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~ 215 (266)
.+..+++.. . ++.+||||||||++|||||+.+|++|||||||++||+.++..+.+
T Consensus 78 ~tv~~nl~~-----------------~--------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 78 GTLREQLIY-----------------P--------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred ccHHHHhhc-----------------c--------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence 233333211 0 357999999999999999999999999999999999999999999
Q ss_pred HHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 216 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 216 ~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
.+.+.+.|+|++|||.++. .+||++++|+++.
T Consensus 133 ~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 133 LLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred HHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 9988888999999999876 5899999998753
No 218
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.8e-45 Score=346.41 Aligned_cols=200 Identities=19% Similarity=0.225 Sum_probs=165.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
+|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 699999999995 456999999999999999999999999999999999999999999987552 13788
Q ss_pred EeccccCCC-CC-----CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 124 FSQHHVDGL-DL-----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 124 ~~q~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
++|++...+ .. ..+...++. ......+++.++++.+++.+ ..++++.+|||||||||+||+||+.+|++||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQ--DEVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcc--cchhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 988752111 10 112222211 01112456788999999974 5678999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 198 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|||||++||+.++.++.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 222 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA-ETGEREEI 222 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999998888664 569999999999999999999999999996 56887765
No 219
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.9e-44 Score=353.66 Aligned_cols=203 Identities=26% Similarity=0.431 Sum_probs=170.7
Q ss_pred CcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
..|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 35999999999975 246999999999999999999999999999999999999999999999874 36
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~ 190 (266)
++|++|++.. +..+..+++....+..+++++.++++..++.+... ......||||||||++|||||+
T Consensus 557 i~~v~Q~~~l---F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 557 VALVGQEPVL---FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred ceEEecCccc---cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 9999999752 34566777654434556788888888888754322 1234579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
++|+|||||||||+||+++...+.+.....+.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~iv-e~Gt~~eL~~ 702 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVV-EMGTHKQLME 702 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEE-EeeCHHHHHh
Confidence 999999999999999999999888833333579999999999887 59999999999997 5799988764
No 220
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.5e-44 Score=312.14 Aligned_cols=200 Identities=27% Similarity=0.328 Sum_probs=165.5
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ 126 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q 126 (266)
|+++|+++.|+ ++.+|+|+||++.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 47899999995 457999999999999999999999999999999999999999999988653 24899999
Q ss_pred cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
++.. ....+..+++... .... ..+.+.++++.+++.+ ..++++.+||+||+||++|||||+.+|+++||||
T Consensus 80 ~~~~--~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 80 HYAL--FKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred Chhh--ccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8632 1222333333211 1111 2345678899999974 5678889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 219 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE-QIGSPDEVY 219 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE-EecCHHHHH
Confidence 99999999999998888653 579999999999999999999999999997 567777764
No 221
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=313.50 Aligned_cols=201 Identities=19% Similarity=0.253 Sum_probs=163.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-----------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------- 118 (266)
+|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 689999999995 45799999999999999999999999999999999999986 5999988662
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHH
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lAr 187 (266)
..++|++|++.. +. .+..+++... .... ..+++.++++.+++.+ ...++++.+|||||+|||+|||
T Consensus 82 ~~~i~~~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 82 RIKVGMVFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HhheeEEecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 248999998632 12 3444443211 1111 1234566778888743 2346788999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+.+|++|||||||+|||+.++..+.+.|.+. +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 232 (249)
T PRK14253 159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV-EHDDTQVIF 232 (249)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999998888765 469999999999999999999999999997 568877663
No 222
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-45 Score=336.35 Aligned_cols=202 Identities=27% Similarity=0.416 Sum_probs=174.7
Q ss_pred cEEEEeeEEEcCCCC-cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 55 IISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
.++++||+|+|++.. ++|+|+||++++||++||+|++|||||||+++|+|.++|++|+|..++. ..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 799999999998654 6999999999999999999999999999999999999999999998773 2477
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~~ 192 (266)
+++|... -+..+..+++....++.+++++.++++++|+.+...+. ....|||||+||++|||+|+++
T Consensus 416 vl~Qr~h---lF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 416 VLTQRVH---LFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhccchH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 7777653 12345666666556677889999999999997544433 2568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
.+++||||||.|||+.+.+++++.+.+. ++|+|||||++..++ .||+|++|++|+++ .+|++.++..
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkii-e~G~~~~Ll~ 561 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKII-EEGTHAELLA 561 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeee-ecCCHHhhhc
Confidence 9999999999999999999999988654 679999999999998 59999999999997 6899888754
No 223
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=317.09 Aligned_cols=204 Identities=18% Similarity=0.253 Sum_probs=166.2
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 118 (266)
..++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 22 ~~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 22 EQTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CCcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 356899999999995 4569999999999999999999999999999999999987 48999987652
Q ss_pred -----eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 024529 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV 183 (266)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv 183 (266)
..++|++|++.. +. .+..+++.. ..... ..+.+.++++.+++.+ ...++++.+|||||+||+
T Consensus 101 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 101 VAELRRRVGMVFQRPNP-FP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred HHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 258999998632 12 244444321 11111 1244677888888853 234678899999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||+.+|++|||||||+|||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 255 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF 255 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence 9999999999999999999999999999998888654 469999999999999999999999999996 568877764
No 224
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-45 Score=348.86 Aligned_cols=206 Identities=18% Similarity=0.264 Sum_probs=166.9
Q ss_pred CCcEEEEeeEEEcC--CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCe-----------
Q 024529 53 PPIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAK----------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~----------- 118 (266)
.++|+++|+++.|+ ++..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 45899999999994 23468999999999999999999999999999999999998 59999998763
Q ss_pred -eeEEEEecccc-CCCCCCCcHHHHHHH----hCC-----C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529 119 -VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP-----G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 -~~i~~~~q~~~-~~~~~~~~~~~~~~~----~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++. ..+....+..+++.. .+. . ...+++.++++.+++.....++++.+|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 23899999852 112222344433321 110 1 1124578899999996335678899999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||||+.+|++|||||||+|||+.++..+++.+.+ .+.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 492 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK-GDLINHNL 492 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEeccccC
Confidence 9999999999999999999999999988777654 4679999999999999999999999999986 56766665
No 225
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=9.4e-45 Score=313.20 Aligned_cols=185 Identities=28% Similarity=0.372 Sum_probs=149.3
Q ss_pred EEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEEeccccCCC
Q 024529 63 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVFSQHHVDGL 132 (266)
Q Consensus 63 ~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~~q~~~~~~ 132 (266)
+.| +.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|++|+.. .+
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 106 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT-QL 106 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcc-cc
Confidence 445 34569999999999999999999999999999999999999999999987642 5788874321 11
Q ss_pred CCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529 133 DLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206 (266)
Q Consensus 133 ~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD 206 (266)
....+..+++. ...... ..+.+.++++.+++.+ ..++++.+|||||+||++||+||+.+|++|||||||++||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 22223333321 111111 1234667888999974 4577889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 207 LDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 207 ~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+.+++.+.+.|.++ +.|||+|||+++++..+||++++|++|+++
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 99999999988754 469999999999999999999999999986
No 226
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=312.89 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=161.9
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--C---CceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~--------- 118 (266)
+++|+++|++++|+ .+.+|+|+||+|.+||+++|+||||||||||+++|+|+++ | ++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 46899999999995 4579999999999999999999999999999999999865 5 5899987663
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCC--C---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG--V---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~--~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+...++.. .... . ..+.+.+.++.+++.. ...++++.+|||||+||++
T Consensus 82 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 248999998632 22 244443321 1111 1 1234566677777632 2346788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+||||++++..+||++++|++|+++ ..|+..+.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLI-EFADTKQM 234 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999999999998888764 469999999999999999999999999997 45665544
No 227
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.4e-45 Score=332.49 Aligned_cols=197 Identities=22% Similarity=0.241 Sum_probs=163.1
Q ss_pred EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------------e
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------------V 119 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------------~ 119 (266)
.++.+.| +...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++. .
T Consensus 28 ~~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 28 EEILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 3556677 4556899999999999999999999999999999999999999999998762 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
.++|++|++.. ....+..+++... ..+. ...++.++++.+|+.+ ..++++.+|||||+||++|||||+.+|
T Consensus 107 ~i~~vfQ~~~l--~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~-~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 107 RVSMVFQKFAL--MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ-WADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CEEEEECCCcC--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 59999998642 2233444444321 1111 2356788999999974 567889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+||||||||++||+.++..+.+.|.+. +.|||+||||++++.++||++++|++|+++ ..|+.+++.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv-~~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII-QHGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 999999999999999999988877543 679999999999999999999999999997 568877663
No 228
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=312.84 Aligned_cols=202 Identities=21% Similarity=0.274 Sum_probs=163.8
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-----ceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~---------- 118 (266)
++|+++|+++.|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4799999999995 456999999999999999999999999999999999999997 699987652
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++... .... ..+.+.++++.+++.+ ...++++.+|||||+||++|
T Consensus 82 ~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 82 NLRKRVGMVFQQPNP-FP--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred HhhceEEEEecCCcc-Cc--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 248999998642 12 2444443211 1111 1234566677777642 23567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+|||+++++..+||++++|++|++. ..|+.+++.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 234 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLV-EYGRTGEIF 234 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEE-EeCCHHHHH
Confidence 99999999999999999999999999888888754 469999999999999999999999999996 567777653
No 229
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.5e-44 Score=344.88 Aligned_cols=203 Identities=24% Similarity=0.416 Sum_probs=173.6
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++|++|+|+++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 459999999999653 46899999999999999999999999999999999999999999999874 259
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc---------CCCCCCChHHHHHHHHHHHHccC
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgGqkqRv~lAral~~~ 192 (266)
+|++|++.. +..+..+++....+..+++++.++++.+++.+.... .....||||||||++|||||+++
T Consensus 417 ~~v~Q~~~l---f~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 417 SVVSQRVHL---FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred eEEcccchh---hcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999742 334666666544445677889999999998754332 13567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|++|||||||++||+.+.+.+.+.+.+. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+.+++.+
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 562 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQII-EQGTHQELLA 562 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEE-EeCCHHHHHh
Confidence 9999999999999999999999998765 5699999999999874 9999999999997 5788877643
No 230
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.4e-44 Score=304.86 Aligned_cols=185 Identities=22% Similarity=0.388 Sum_probs=155.7
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEEe
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVFS 125 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~~ 125 (266)
|+++|+++.|+ ++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.. .++|++
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 47899999995 4568999999999999999999999999999999999999999999887632 588999
Q ss_pred ccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L 205 (266)
|++. +....+..+++.........+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++|
T Consensus 80 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 80 HAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred cccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 8753 2223345554432211224567888999999974 457889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEE
Q 024529 206 DLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 206 D~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
|+.++.++.+.|.++ +.|+|++|||...+..+|++++.+
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999888654 579999999999998999999877
No 231
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=313.81 Aligned_cols=200 Identities=20% Similarity=0.269 Sum_probs=162.5
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe------------
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------------ 118 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------------ 118 (266)
-+++|+++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+.+ |++|+|.+++.
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 36899999995 4578999999999999999999999999999999999986 47999988663
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC------cHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV------PEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. +. .+..+++... .... ..+.+.++++.+++.+. ..++++.+||||||||++||
T Consensus 85 ~~~i~~v~q~~~~-~~--~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 85 RAKVGMVFQKPNP-FP--KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred hhhEEEEecCccc-cc--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 248999998632 11 2344333211 1111 12346678899998542 34567899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV-EYNTTQEIF 236 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999999998888654 469999999999999999999999999996 568877764
No 232
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=315.80 Aligned_cols=203 Identities=21% Similarity=0.229 Sum_probs=163.9
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------- 118 (266)
.++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 8 ~~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 35899999999995 4568999999999999999999999999999999999976 48999988763
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. +. .+..+++... ... ...+++.++++.+++.. ...++++.+|||||+||++||
T Consensus 87 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 87 VEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred HHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 248999998632 11 2444443211 111 12344566677777742 234678899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe---------CCeEEecCCC
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS---------EGKATPFHGT 255 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~---------~G~i~~~~g~ 255 (266)
|||+.+|++|||||||++||+.++..+.+.|.++ +.|||++||+++++..+||++++|+ +|+++ ..|+
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~ 242 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDR 242 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE-EeCC
Confidence 9999999999999999999999999998888754 3699999999999999999999998 79996 6788
Q ss_pred hhHHH
Q 024529 256 FHDYK 260 (266)
Q Consensus 256 ~~~~~ 260 (266)
.+++.
T Consensus 243 ~~~~~ 247 (264)
T PRK14243 243 TEKIF 247 (264)
T ss_pred HHHHH
Confidence 77763
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.6e-44 Score=344.44 Aligned_cols=203 Identities=22% Similarity=0.320 Sum_probs=164.9
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcC----------------
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSA---------------- 117 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~---------------- 117 (266)
|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 57899999995 457999999999999999999999999999999999997 79999998751
Q ss_pred ----------------------------eeeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCC
Q 024529 118 ----------------------------KVRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGV 163 (266)
Q Consensus 118 ----------------------------~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l 163 (266)
+..++|++|++.. +....+..+++.. ..... ..+++.++++.+++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA-LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccc-cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 1248999996311 1112233333321 11111 13467789999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcC
Q 024529 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d 239 (266)
.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|||+||||++++..+||
T Consensus 159 ~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 159 SH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred hh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 64 55788999999999999999999999999999999999999999998777654 35799999999999999999
Q ss_pred EEEEEeCCeEEecCCChhHHHHH
Q 024529 240 ELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 240 ~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
++++|++|+++ +.|+++++.+.
T Consensus 238 ~i~~l~~G~i~-~~g~~~~~~~~ 259 (520)
T TIGR03269 238 KAIWLENGEIK-EEGTPDEVVAV 259 (520)
T ss_pred EEEEEeCCEEe-eecCHHHHHHH
Confidence 99999999996 57888887554
No 234
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-44 Score=313.66 Aligned_cols=202 Identities=21% Similarity=0.237 Sum_probs=164.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-----ceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~---------- 118 (266)
++|+++|+++.|+ +..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 3699999999995 456899999999999999999999999999999999999985 788877652
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++... .... ....+.++++.+++.+ ...++++.+|||||+||++|
T Consensus 85 ~~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 85 RLRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred HhhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 238899987531 22 3444443211 1111 1244677888888742 24567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeC-----CeEEecCCCh
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE-----GKATPFHGTF 256 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~-----G~i~~~~g~~ 256 (266)
||+|+.+|++|||||||++||+.++..+.+.|.+ .+.|||+||||++++..+||++++|++ |+++ ..|++
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~ 240 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLT 240 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCH
Confidence 9999999999999999999999999998887765 257999999999999999999999999 9986 67888
Q ss_pred hHHH
Q 024529 257 HDYK 260 (266)
Q Consensus 257 ~~~~ 260 (266)
+++.
T Consensus 241 ~~~~ 244 (261)
T PRK14258 241 KKIF 244 (261)
T ss_pred HHHH
Confidence 7764
No 235
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.1e-44 Score=343.98 Aligned_cols=200 Identities=18% Similarity=0.295 Sum_probs=163.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCe------------ee
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~------------~~ 120 (266)
+|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++. ..
T Consensus 1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 478999999995 45699999999999999999999999999999999999987 7999998763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHh--CC--C--C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRC--FP--G--V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~--~--~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
++|++|++.. ....+..+++... .. . . ..+++.++++.+++.....++++.+|||||||||+|||||+
T Consensus 80 i~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 80 IVIIHQELTL--VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEEEeecccc--CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 8999998632 2223444443211 10 0 1 12457788999999754345778999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
.+|++|||||||+|||+.++.++.+.|++ .+.|||+||||++++..+||++++|++|+++ ..++.++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 227 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV-ATKDMST 227 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe-eecCccc
Confidence 99999999999999999999999887765 3569999999999999999999999999986 4565443
No 236
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-44 Score=306.09 Aligned_cols=182 Identities=25% Similarity=0.378 Sum_probs=149.7
Q ss_pred EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------------eEE
Q 024529 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------RIA 122 (266)
Q Consensus 58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------------~i~ 122 (266)
++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 478999995 4569999999999999999999999999999999999999999999887642 489
Q ss_pred EEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++|++.. ....+..+++.. .... ...+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|
T Consensus 80 ~~~q~~~~--~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 80 YLFQNFAL--IENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL-KLKQKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred EEecchhh--ccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh-hhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99998632 222344333321 1111 12356788999999964 457888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEE
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
||||||++||+.++..+.+.|++. +.|||++||+++++. +||++++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 999999999999999998888754 569999999999875 79999875
No 237
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.9e-44 Score=306.93 Aligned_cols=191 Identities=26% Similarity=0.366 Sum_probs=157.0
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
+|+++|+++.|+++ ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 37899999999542 56999999999999999999999999999999999999999999988764
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHH--H-hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMM--R-CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..++|++|++... ...+..+++. . ..... ....+.++++.+++.+ ..++++.+||+||+||++|||||+
T Consensus 81 ~~~i~~~~q~~~~~--~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 81 RRNIGYIFQAHNLL--GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD-HLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HhheEEEcCChhhc--CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHh
Confidence 2489999986322 2223333332 1 11111 1345788999999964 556788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
.+|++|||||||++||+.++..+.+.|++. +.|||++|||++.. .+||++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999998888877643 57999999999965 69999999999985
No 238
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3e-44 Score=306.79 Aligned_cols=194 Identities=23% Similarity=0.375 Sum_probs=159.2
Q ss_pred EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
|+++|+++.|++. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 7899999999643 46999999999999999999999999999999999999999999998763 25899
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
++|++. + +..+..+++.. ......+++.+.++.+++.+.. .++++..|||||+||++|||||+.+|
T Consensus 83 ~~q~~~--l-~~~tv~enl~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 83 IPQDPV--L-FSGTIRSNLDP-FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred ECCCCc--c-ccchHHHHhCc-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999864 1 12344444421 1123445666677777765332 13578899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~ 255 (266)
++|||||||++||+.++..+.+.|++. +.|||++||+.+++.. ||++++|++|+++ ..|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~-~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVV-EFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEE-ecCC
Confidence 999999999999999999999988764 4689999999999975 9999999999986 4443
No 239
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=7.8e-44 Score=344.27 Aligned_cols=202 Identities=23% Similarity=0.388 Sum_probs=169.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
..++++|++|+|++++.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975456899999999999999999999999999999999999999999999874 3699
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++.. +..+..+++....++.+++++.++++.+++.+... ......||||||||++|||||+++
T Consensus 413 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 413 VVFQDAGL---FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred EEecCccc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999742 34566666654334456777888888777643221 122457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|+|||||||||+||+.+.+.+.+.+.+. ++|+|+|||+.+.+. .||+|++|++|++. ..|+.+++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~-~~g~~~~l~ 557 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVV-ESGSFDELV 557 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999988765 479999999999876 69999999999997 467776653
No 240
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.4e-44 Score=309.47 Aligned_cols=189 Identities=24% Similarity=0.366 Sum_probs=153.7
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC----CceEEEEcCe---------eeEEEEeccccCCCCCCCc
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VRIAVFSQHHVDGLDLSSN 137 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~~ 137 (266)
+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++. ..++|++|++...+....+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 8999998773 3589999986311222223
Q ss_pred HHHHHH---HhCCC---CcHHHHHHHHHhcCCCc--ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529 138 PLLYMM---RCFPG---VPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209 (266)
Q Consensus 138 ~~~~~~---~~~~~---~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~ 209 (266)
...++. ..... ...+++.++++.+++.+ ...++++.+|||||||||+|||||+.+|+||||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 222211 11111 12345788999999963 34578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 210 VEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 210 ~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+..+.+.|.+. +.|||++||+++++..+||++++|++|++. ..|+.+++.
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 214 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV-ERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99888877643 569999999999999999999999999996 578877764
No 241
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-44 Score=310.26 Aligned_cols=203 Identities=19% Similarity=0.238 Sum_probs=163.8
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--C---CceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~--------- 118 (266)
.++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.+++.
T Consensus 4 ~~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 45899999999995 4579999999999999999999999999999999999975 3 4899987653
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~ 184 (266)
..++|++|++.. +. .+..+++.. ..... ....+.++++.+++.+ ...++++.+|||||+||++
T Consensus 83 ~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 83 VALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred hhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 248999998632 22 244444321 11111 1234667788887742 2246788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|++|||||||+|||+.++..+.+.+.+. +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 236 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI-EFDKTTQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE-EcCCHHHHH
Confidence 999999999999999999999999999988887654 469999999999999999999999999996 568877664
No 242
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.6e-44 Score=287.96 Aligned_cols=144 Identities=44% Similarity=0.768 Sum_probs=136.3
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (266)
++++|+++.|++ ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|++++...++|++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence 478999999954 4699999999999999999999999999999999999999999999988777888877
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215 (266)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~ 215 (266)
||+||+||++|||||+.+|+++||||||++||+.++..+.+
T Consensus 71 ---------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 71 ---------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 216 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 216 ~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
.+++.+.|||++||+.+++..+||++++|++|+
T Consensus 112 ~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 112 ALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 998888899999999999999999999999985
No 243
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=341.95 Aligned_cols=193 Identities=26% Similarity=0.372 Sum_probs=162.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999995 456999999999999999999999999999999999999999999988763 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhC----CC-C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCF----PG-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~----~~-~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
+|++|++.. ....+..+++.... .. . ..+++.++++.+++.. ..++++.+||||||||++|||||+.+
T Consensus 82 ~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 82 AIIYQELHL--VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEEEechhc--cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 999998532 22234444433210 01 1 1346778999999974 45788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|++|||||||++||+.++.++.+.|.+. +.|||+||||++++..+||++++|++|+++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999998887653 579999999999999999999999999986
No 244
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7.4e-44 Score=343.21 Aligned_cols=201 Identities=23% Similarity=0.362 Sum_probs=170.1
Q ss_pred cEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 55 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
.++++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 5999999999964 356899999999999999999999999999999999999999999999874 3599
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHcc
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~ 191 (266)
|++|++.. +..+..+++....+ ..+++++.++++.+++.+...+. ....||||||||++||||++.
T Consensus 410 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 410 LVSQDVVL---FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred EEccCccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999742 34456666643332 46788899999988875433221 235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|+||||||||++||+.+.+.+++.|.+. +.|+|+|||+.+.+. .||+|++|++|++. ..|+.+++.
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~-~~g~~~~l~ 555 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV-ERGTHNELL 555 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE-eeCCHHHHH
Confidence 99999999999999999999999998875 479999999998876 69999999999996 578877754
No 245
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-44 Score=312.08 Aligned_cols=202 Identities=22% Similarity=0.245 Sum_probs=164.7
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe----------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------- 118 (266)
++|+++|+++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 4699999999995 45689999999999999999999999999999999999885 4899988753
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHHh---C---CCC-cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC---F---PGV-PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~-~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++.. +. .+..+++... . ... ..+.+.++++.+++.+ ...++++.+|||||+||++|
T Consensus 85 ~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 85 RLRRQIGMVFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred hhhhheEEEeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 248999998642 12 3444444211 1 111 1234667888888742 24567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe-----CCeEEecCCChhH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS-----EGKATPFHGTFHD 258 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~-----~G~i~~~~g~~~~ 258 (266)
||||+.+|++|||||||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|+ +|+++ ..|+.++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~ 240 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQ 240 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHH
Confidence 99999999999999999999999999998888754 4699999999999999999999998 59986 5788877
Q ss_pred HH
Q 024529 259 YK 260 (266)
Q Consensus 259 ~~ 260 (266)
+.
T Consensus 241 ~~ 242 (259)
T PRK14260 241 IF 242 (259)
T ss_pred Hh
Confidence 63
No 246
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-44 Score=304.38 Aligned_cols=186 Identities=28% Similarity=0.384 Sum_probs=154.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEEEEec
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQ 126 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~~~~q 126 (266)
+|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. .++|++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 689999999995 4568999999999999999999999999999999999999999999987742 4788887
Q ss_pred cccCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529 127 HHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~ 204 (266)
.... ....+..+++.. .......+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||++
T Consensus 81 ~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 81 RNAM--KPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCcC--CCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 6432 222344444321 111233456888999999975 45788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 205 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 205 LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
||+.++..+.+.|.+. +.|||++||+.+++.. |+++.++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999998888654 6799999999999986 88887743
No 247
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.1e-43 Score=342.02 Aligned_cols=202 Identities=27% Similarity=0.464 Sum_probs=171.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
.|+++|++|+|++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|. ..+++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 4999999999975667999999999999999999999999999999999999999999999773 36999
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p 193 (266)
++|++.. +..+..+++....++.+++++.++++..++.+...+ .....||||||||++||||++.+|
T Consensus 408 V~Qd~~L---F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 408 VSQDPLL---FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred Eccccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 9998752 335677777655445677888888887765443222 234589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+||+||||||+||+.+...+.+.+.+. +.|+|+|+|++..+.. ||+|++|++|+++ ..|+.+++.+
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~-e~G~h~eLl~ 552 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIV-ERGTHEELLA 552 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEE-EecCHHHHHH
Confidence 999999999999999999999988643 4599999999999987 9999999999986 6799988754
No 248
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=343.30 Aligned_cols=196 Identities=17% Similarity=0.234 Sum_probs=161.2
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 120 (266)
+++|+++|+++.| + .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..
T Consensus 263 ~~~l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 263 ETVFEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred CcEEEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 4589999999977 3 3899999999999999999999999999999999999999999998763 24
Q ss_pred EEEEecccc-CCCCCCCcHHHHHHHhC-----------C--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 024529 121 IAVFSQHHV-DGLDLSSNPLLYMMRCF-----------P--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 121 i~~~~q~~~-~~~~~~~~~~~~~~~~~-----------~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~ 184 (266)
++|++|++. ..+....++.+++.... . . ....++.++++.+++.....++++.+|||||||||+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 419 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence 899999741 12222334444432110 0 0 012346788999999634567899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATP 251 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 251 (266)
|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++.
T Consensus 420 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999988887643 6799999999999999999999999999863
No 249
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=310.42 Aligned_cols=205 Identities=22% Similarity=0.285 Sum_probs=164.8
Q ss_pred CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-------
Q 024529 51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------- 118 (266)
Q Consensus 51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~------- 118 (266)
+...+|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+++.
T Consensus 12 ~~~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 12 PTQQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCCceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3456799999999995 45799999999999999999999999999999999999875 7999987541
Q ss_pred --------eeEEEEeccccCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHH
Q 024529 119 --------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQK 180 (266)
Q Consensus 119 --------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 180 (266)
..++|++|++... . .+..+++... ... ...+++.++++.+++.. ...++++.+|||||+
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred ccCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 2489999986321 1 2444443211 111 11345667777777642 234677899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
||++|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+|||+++++..+||++++|++|+++ ..|+.++
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 246 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELI-EFGATDT 246 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999999999999999988888754 468999999999999999999999999997 5677766
Q ss_pred HH
Q 024529 259 YK 260 (266)
Q Consensus 259 ~~ 260 (266)
+.
T Consensus 247 ~~ 248 (265)
T PRK14252 247 IF 248 (265)
T ss_pred HH
Confidence 54
No 250
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.9e-44 Score=297.69 Aligned_cols=165 Identities=21% Similarity=0.384 Sum_probs=138.3
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 120 (266)
.++|+++|++++| +|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 3579999999998 799999999999999999999999999999999999999999988763 24
Q ss_pred EEEEecccc-CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 121 IAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 121 i~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
++|++|++. ..+....+..+++.... .||||||||++|||||+.+|++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~---------------------------~LS~G~~qrl~la~al~~~p~llllD 129 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS---------------------------LLSGGNQQKVVLARWLARDPRVLILD 129 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh---------------------------hcCHHHHHHHHHHHHHccCCCEEEEC
Confidence 788888742 11222223333221100 09999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 200 EPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
|||++||+.++..+.+.+.+. +.|+|++||+++++..+||++++|++|++
T Consensus 130 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 130 EPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999998887654 56999999999999999999999999874
No 251
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.1e-44 Score=292.02 Aligned_cols=158 Identities=22% Similarity=0.398 Sum_probs=131.0
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (266)
|+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.. ...
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~---------~~~---- 66 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE---------VSF---- 66 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE---------CCc----
Confidence 47899999995 4569999999999999999999999999999999999999999999876531 000
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215 (266)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~ 215 (266)
...... . -..+++ +.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+
T Consensus 67 ~~~~~~------------~---~~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~ 123 (163)
T cd03216 67 ASPRDA------------R---RAGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123 (163)
T ss_pred CCHHHH------------H---hcCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 000000 0 001111 11299999999999999999999999999999999999999988
Q ss_pred HHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 216 GLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 216 ~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
.++++ +.|||++|||.+++..+||++++|++|+++
T Consensus 124 ~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 88654 569999999999999999999999999985
No 252
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-43 Score=299.64 Aligned_cols=188 Identities=20% Similarity=0.319 Sum_probs=154.7
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++|++++|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 469999999999642 46899999999999999999999999999999999999999999998763 359
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
+|++|++.. + ..+..+++.. ......+++.+.++ .+.++..|||||+||++|||||+.+|++||||||
T Consensus 85 ~~v~q~~~~-~--~~tv~~~l~~-~~~~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 85 TIIPQDPTL-F--SGTIRSNLDP-FDEYSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred EEEecCCcc-c--CccHHHHhcc-cCCCCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 999998632 1 2345554422 11223344444444 2357789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529 202 SNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~ 255 (266)
|++||+.++..+.+.|+++ +.|+|++||+.+++.. ||++++|++|++. ..|+
T Consensus 153 ~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~-~~g~ 206 (207)
T cd03369 153 TASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVK-EYDH 206 (207)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEE-ecCC
Confidence 9999999999999888764 4699999999999976 9999999999986 3453
No 253
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.3e-44 Score=305.77 Aligned_cols=190 Identities=26% Similarity=0.342 Sum_probs=153.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (266)
+.+++++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++... .+..... .+...
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~-~~~~~~~--~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS-SLLGLGG--GFNPE 98 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc-hhhcccc--cCCCC
Confidence 78899999994 56799999999999999999999999999999999999999999999887531 1111111 11122
Q ss_pred CcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529 136 SNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209 (266)
Q Consensus 136 ~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~ 209 (266)
.+..+++.. ...... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 333333321 111111 234677888899964 4678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 210 VEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 210 ~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+..+.+.+.+. +.|||+|||+.+++..+||++++|++|+++
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99888877653 469999999999999999999999999986
No 254
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=6.7e-44 Score=305.70 Aligned_cols=192 Identities=24% Similarity=0.455 Sum_probs=155.6
Q ss_pred CCcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------e
Q 024529 53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 119 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~ 119 (266)
.++|+++|+++.|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4689999999999642 36899999999999999999999999999999999999999999998763 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHH---------HHHHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ---------KLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAra 188 (266)
.++|++|++.. + ..+..+++.......... .+.++++.+ |+.. ..+.++.+|||||+||++||||
T Consensus 89 ~i~~~~q~~~l-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 89 KVSLVGQEPVL-F--ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT-EVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hEEEEecccHH-H--hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCCHHHHHHHHHHHH
Confidence 58999998632 1 124444432111111111 134567777 6754 3567789999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
|+.+|++|||||||++||+.++..+.+.+.+. +.|||++|||++++. .||++++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999998888764 369999999999997 5999999999874
No 255
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=318.30 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=166.4
Q ss_pred CCCcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe-------
Q 024529 52 GPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------- 118 (266)
...+|+++|++++|.+ ...+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3458999999999953 3468999999999999999999999999999999999986 57999987653
Q ss_pred ------eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc-H----HHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 024529 119 ------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP-E----QKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR 182 (266)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~-~----~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqR 182 (266)
..++|++|++... ..+..+++.. ...... . +.+.++++.+++.+ ...++++.+||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~---~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF---EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCccC---CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 2589999987522 2345444431 111111 1 22566788887742 23457889999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|||||+.+|+||||||||++||+.+...+.+.|.+. +.|||+|||+++++..+||+|++|++|+++ ..|+++++.
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~ 312 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF 312 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999999999888877654 479999999999999999999999999997 578888864
No 256
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9.6e-44 Score=312.93 Aligned_cols=198 Identities=21% Similarity=0.300 Sum_probs=165.4
Q ss_pred EEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 56 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
|+++|++++|++ ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++++. ..++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 789999999953 4568999999999999999999999999999999999997 7899998873 25899
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCC-----------CChHHHHHHHHHHHHccC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----------LSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqRv~lAral~~~ 192 (266)
++|++.. +..+...++.. +.....+++.++++.+++.+. .++.+.. |||||+||++|||||+.+
T Consensus 82 v~q~~~l---f~~tv~~nl~~-~~~~~~~~~~~~l~~~gL~~~-~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 82 IPQKVFI---FSGTFRKNLDP-YGKWSDEEIWKVAEEVGLKSV-IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred ECCCccc---chhhHHHHhhh-ccCCCHHHHHHHHHHcCCHHH-HHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9998642 12345555421 122456678889999999754 4455554 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|+||||||||++||+.+...+.+.|.+. +.|||+|||+++++.. ||+|++|++|+++ ..|+++++.+
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 225 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN 225 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence 9999999999999999999998888753 5699999999999875 9999999999997 5688877654
No 257
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.3e-44 Score=332.66 Aligned_cols=207 Identities=21% Similarity=0.313 Sum_probs=173.8
Q ss_pred CcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC----ceEEEEcCe--------
Q 024529 54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS----SGTVFRSAK-------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i~~~~~-------- 118 (266)
++|+++||++.|... ..+++||||+|.+||++||+|.|||||||+.++|.|++++. +|+|.++++
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999999532 25899999999999999999999999999999999999887 899988874
Q ss_pred -------eeEEEEeccccCCCCCCCcHHHHHH---HhCC----CCcHHHHHHHHHhcCCCcccc-cCCCCCCChHHHHHH
Q 024529 119 -------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFP----GVPEQKLRAHLGSFGVTGNLA-LQPMYTLSGGQKSRV 183 (266)
Q Consensus 119 -------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGqkqRv 183 (266)
..|+|+||++...++...+.-..+. .... ....+++.++|+.+++++... ++++++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 3699999998766655433322221 1111 124567888999999986554 358999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
.||+||+.+|++||+||||.+||+.++.++++.|++ .+.++|+||||+..+..+||||+||.+|+++ ..|+.+++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV-E~G~~~~i 242 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV-ETGPTEEI 242 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE-EecCHHHH
Confidence 999999999999999999999999999999888864 4678999999999999999999999999997 57888876
Q ss_pred HH
Q 024529 260 KK 261 (266)
Q Consensus 260 ~~ 261 (266)
..
T Consensus 243 ~~ 244 (539)
T COG1123 243 LS 244 (539)
T ss_pred Hh
Confidence 43
No 258
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-43 Score=347.83 Aligned_cols=203 Identities=25% Similarity=0.421 Sum_probs=170.9
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++||+|+|+++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 359999999999643 56899999999999999999999999999999999999999999999874 258
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++.. +..+..+++....+..+.+++.++++..++.+... ......||||||||++|||||++
T Consensus 534 ~~v~q~~~l---f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 534 GVVLQENVL---FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred eEEccCCee---hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 999998642 34466666654334456777888888777653221 23356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|++|||||||++||+.+...+.+.|.+. +.|+|+|||+++.+.. ||++++|++|+++ ..|+.+++.+
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~-~~g~~~~l~~ 680 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIA-ESGRHEELLA 680 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEE-EeCCHHHHHH
Confidence 99999999999999999999999998875 4699999999999874 9999999999997 5788877643
No 259
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.2e-43 Score=339.57 Aligned_cols=203 Identities=18% Similarity=0.327 Sum_probs=167.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
..++++|++|+|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975556899999999999999999999999999999999999999999998774 2589
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++.. +..+..+++....+..+++++.++++..++.+. ........||||||||++|||||+.+
T Consensus 413 ~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 413 TVFQDAGL---FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred EEccCCcc---CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99998742 234566666443334456666666665544321 12345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|++|||||||++||+.+.+.+.+.|.+. +.|+|+|||+.+.+. .||++++|++|+++ ..|+.+++.+
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 558 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLI-EKGSFQELIQ 558 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEE-EECCHHHHHH
Confidence 9999999999999999999999988764 579999999999996 59999999999997 5788777643
No 260
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.8e-44 Score=300.22 Aligned_cols=186 Identities=26% Similarity=0.395 Sum_probs=149.2
Q ss_pred EEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529 56 ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 56 l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
|+++||+++|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++..
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~l- 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPWI- 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCchh-
Confidence 4789999999654 3699999999999999999999999999999999999999999999988 79999998642
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
+ ..+..+++.... ....+...+.++.+++.+ ...+.++.+||+|||||++|||||+.+|+++|||||
T Consensus 78 ~--~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 78 Q--NGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred c--cCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1 335555543221 122333444444444321 123456789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-Hhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 202 SNHLDLDAVEALIQG-LVL---FQGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 202 t~~LD~~~~~~l~~~-l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
|++||+.+.+.+.+. +.+ .+.|||++||+.+.+.. ||++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999998888774 432 24699999999999997 99999999885
No 261
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.2e-43 Score=337.20 Aligned_cols=203 Identities=25% Similarity=0.411 Sum_probs=166.8
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..++++|++|+|+++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 359999999999643 57899999999999999999999999999999999999999999998874 259
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++.. +..+..+++....+..+++++.++++..++.+ .........||||||||++|||||+.
T Consensus 395 ~~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 395 GYLPQDVEL---FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred EEecCCccc---ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 999998742 23455666542222345566666666554432 12234567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|++|||||||++||+.+.+.+.+.+.+. +.|+|++||+.+.+. .||++++|++|+++ ..|+.+++.+
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 542 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIA-RFGERDEVLA 542 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-eeCCHHHHhh
Confidence 99999999999999999999999988764 479999999999875 69999999999997 6799888754
No 262
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2e-44 Score=342.32 Aligned_cols=206 Identities=19% Similarity=0.263 Sum_probs=164.0
Q ss_pred CCcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCe-----------
Q 024529 53 PPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK----------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~----------- 118 (266)
.++|+++|+++.|++ +..+|+|+||+|.+||+++|+||||||||||+|+|+|+++| ++|+|.++++
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 458999999999942 34689999999999999999999999999999999999985 8999998762
Q ss_pred -eeEEEEecccc-CCCCCCCcHHHHHHH----hCC---CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529 119 -VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP---GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 -~~i~~~~q~~~-~~~~~~~~~~~~~~~----~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l 185 (266)
..++|++|++. ..+....+..+++.. ... .. ..+++.++++.+++.....++++.+|||||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 24899999852 112222233332211 010 11 134577899999996444678999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||||+.+|++|||||||+|||+.++..+++.+.+ .+.|||+||||++++..+||++++|++|+++ ..++.+++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 490 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK-GDFVNHAL 490 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence 9999999999999999999999999988766644 4679999999999999999999999999986 44444443
No 263
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-44 Score=293.07 Aligned_cols=160 Identities=26% Similarity=0.415 Sum_probs=137.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEe
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~ 125 (266)
++++|+++.|++ ..+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999999954 46899999999999999999999999999999999999999999988764 2478888
Q ss_pred ccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L 205 (266)
|++. +....+..+++. |||||+||++|||||+.+|++|||||||++|
T Consensus 80 q~~~--~~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 80 EEPS--LYENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred cCCc--cccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 8753 111122222210 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 206 DLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 206 D~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
|+.++..+.+.|.+. +.|+|++|||.+++..+||++++|++|++
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999998888654 46899999999999999999999999874
No 264
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=315.94 Aligned_cols=204 Identities=20% Similarity=0.233 Sum_probs=165.4
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------- 118 (266)
.+++|.++|+++.|+ +..+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 42 ~~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 42 GDAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 456899999999995 4569999999999999999999999999999999999986 68999988753
Q ss_pred -----eeEEEEeccccCCCCCCCcHHHHHHHhC----------------C---CCcHHHHHHHHHhcCCCc---ccccCC
Q 024529 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRCF----------------P---GVPEQKLRAHLGSFGVTG---NLALQP 171 (266)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~~~l~~~~l~~---~~~~~~ 171 (266)
..++|++|++.. +. .+..+++.... . ....+.+.++++.+++.+ ...+++
T Consensus 121 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 121 LVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred HHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 248999998632 11 24444332110 0 011345677888888742 234677
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEE-EEEeCCe
Q 024529 172 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEEL-WVVSEGK 248 (266)
Q Consensus 172 ~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i-~~l~~G~ 248 (266)
+.+|||||+||++|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+|||+++++..+||++ ++|++|+
T Consensus 198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~ 277 (305)
T PRK14264 198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGE 277 (305)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCE
Confidence 8999999999999999999999999999999999999999998888765 469999999999999999997 5779999
Q ss_pred EEecCCChhHHH
Q 024529 249 ATPFHGTFHDYK 260 (266)
Q Consensus 249 i~~~~g~~~~~~ 260 (266)
++ ..|+.+++.
T Consensus 278 i~-~~g~~~~~~ 288 (305)
T PRK14264 278 LV-EYDDTDKIF 288 (305)
T ss_pred EE-EeCCHHHHH
Confidence 97 578877764
No 265
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=296.29 Aligned_cols=202 Identities=27% Similarity=0.411 Sum_probs=165.4
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
||+++|++++.. ++.+++++||++.+||+++|+||||||||||||.|+|...|++|++.+++. ..-+.
T Consensus 1 mi~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 589999999994 567999999999999999999999999999999999999999999998875 24678
Q ss_pred EeccccCCCCCCCcHHHHHHHhCC----C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc------
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFP----G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------ 191 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~------ 191 (266)
++|+....+.++......+..... . .+.+.+..+|...++.. +..+...+|||||+|||.+||+|++
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 888865444444333333322111 1 12233778899999975 5678889999999999999999975
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
++++|+||||||+||+.....+++..++ .+..|+.|-||++++..|||||++|++|+++ ..|++++.
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~-a~g~p~~v 228 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI-ASGSPQDV 228 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe-ecCCHHHh
Confidence 4459999999999999988877776654 4678999999999999999999999999997 68888775
No 266
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=9.7e-44 Score=304.87 Aligned_cols=193 Identities=18% Similarity=0.328 Sum_probs=157.8
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC---CCceEEEEcCe--------ee
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK--------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~--------~~ 120 (266)
.+.++|+++.|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 46799999999764 579999999999999999999999999999999999999 99999998764 35
Q ss_pred EEEEeccccCCCCCCCcHHHHHHH----hCCC-Cc----HHHHHH-HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMR----CFPG-VP----EQKLRA-HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~----~~~~-~~----~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
++|++|++.. ....+..+++.. .... .. ...+.+ .++.+++.. ..++.+.+|||||+||++|||||+
T Consensus 83 i~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAYVRQDDIL--LPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-IGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEEeCCCCcc--CcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-hhcccccCcCHHHHHHHHHHHHHH
Confidence 8999998532 222234433321 1111 11 123444 788888864 456788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCH-HHHHhhcCEEEEEeCCeEE
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDE-HLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~-~~~~~~~d~i~~l~~G~i~ 250 (266)
.+|++|||||||++||+.++..+.+.+.+. +.|+|++||+. +.+..+||++++|++|+++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999988887653 56999999998 6888899999999999986
No 267
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.2e-44 Score=308.00 Aligned_cols=181 Identities=30% Similarity=0.362 Sum_probs=148.9
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEeccccCCCCCCCcHHHHHHHh
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRC 145 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q~~~~~~~~~~~~~~~~~~~ 145 (266)
|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. ..+|++|++.. ....+..+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l--~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL--LPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCccc--CCCCCHHHHHHHH
Confidence 579999999999999999999999999999999999999999987742 25899998632 2223444443211
Q ss_pred ----CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529 146 ----FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217 (266)
Q Consensus 146 ----~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l 217 (266)
..... .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTE-AADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHH-HHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 11221 234678899999974 567889999999999999999999999999999999999999999998887
Q ss_pred hhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529 218 VLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 256 (266)
Q Consensus 218 ~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 256 (266)
.+. +.|||+||||++++..+||++++|++|+++ ..|+.
T Consensus 158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~ 199 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA-NIGQI 199 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe-cccCc
Confidence 652 569999999999999999999999999986 44543
No 268
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=340.39 Aligned_cols=197 Identities=25% Similarity=0.298 Sum_probs=162.7
Q ss_pred EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEEEe
Q 024529 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAVFS 125 (266)
Q Consensus 58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~~~ 125 (266)
++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368999995 457999999999999999999999999999999999999999999998763 2489999
Q ss_pred ccccCCCCCCCcHHHHHHHh---CCC--Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 126 QHHVDGLDLSSNPLLYMMRC---FPG--VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~---~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++. +....+..+++... ... .. .+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 80 QELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred cccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9863 22223444443211 001 11 235778899999974 467889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||||||++||+.++.++.+.|.+ .+.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 221 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI-ATQPLAGL 221 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-eecChhhC
Confidence 99999999999999999887765 3579999999999999999999999999996 56765553
No 269
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-43 Score=307.21 Aligned_cols=203 Identities=20% Similarity=0.225 Sum_probs=166.6
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------- 118 (266)
++.+.++++++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 45799999999994 55799999999999999999999999999999999999986 7999988763
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh--C---CCCcHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--F---PGVPEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++.. + ..+..+++... . .....+++.++++.+++... ..++++.+|||||+||++||
T Consensus 85 ~~~~~~i~~v~q~~~~-~--~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 85 VVVRRYIGMVFQQPNP-F--SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred HhhhhceEEEecCCcc-c--cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 248999998642 1 24454444321 1 11123467788999988532 23467889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe--------CCeEEecCCCh
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS--------EGKATPFHGTF 256 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~--------~G~i~~~~g~~ 256 (266)
|||+.+|++|||||||+|||+.++.++.+.|.+. +.|||++||+++++..+||++++|+ +|+++ ..|+.
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~ 240 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPT 240 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCH
Confidence 9999999999999999999999999999988764 4689999999999999999999996 89997 56887
Q ss_pred hHHH
Q 024529 257 HDYK 260 (266)
Q Consensus 257 ~~~~ 260 (266)
+++.
T Consensus 241 ~~~~ 244 (261)
T PRK14263 241 AQIF 244 (261)
T ss_pred HHHH
Confidence 7764
No 270
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.1e-44 Score=285.50 Aligned_cols=192 Identities=24% Similarity=0.312 Sum_probs=159.0
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
+|+++++++..+.. ..+|++|+|.|++||.++|+|||||||||||-+++|+..|++|+|++.++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 68999999988543 36899999999999999999999999999999999999999999997764
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHH----HhC--CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMM----RCF--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..+||+||.+.. ....+.+++.. ... .......+.+.|+.+|+... ...++.+|||||+|||+|||||+
T Consensus 86 R~~~vGfVFQSF~L--ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~R-l~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQSFHL--IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKR-LTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEeeec--cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccc-cccCccccCchHHHHHHHHHHhc
Confidence 369999998642 22233333321 111 12234568889999999865 45678999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
..|+||+.||||-+||..+-+++.+.+- +.+.|+|+||||..++.+ |+|++.|.+|+++
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 9999999999999999999888877653 346799999999999986 9999999999985
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.9e-43 Score=292.57 Aligned_cols=162 Identities=28% Similarity=0.475 Sum_probs=139.0
Q ss_pred EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (266)
Q Consensus 56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~ 124 (266)
|+++|+++.|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999643 36899999999999999999999999999999999999999999998874 247888
Q ss_pred eccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529 125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~ 204 (266)
+|++.. . ..+..+++ +..|||||+||++||||++.+|++|||||||++
T Consensus 81 ~q~~~~--~-~~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~ 128 (178)
T cd03247 81 NQRPYL--F-DTTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG 128 (178)
T ss_pred ccCCee--e-cccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 886421 1 11221111 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 205 LDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 205 LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
||+.+++.+++.+.+. +.|||++||+.+++. .||++++|++|+++
T Consensus 129 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~ 175 (178)
T cd03247 129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKII 175 (178)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 9999999998888754 568999999999997 69999999999986
No 272
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-44 Score=326.97 Aligned_cols=201 Identities=26% Similarity=0.414 Sum_probs=176.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
.|+++||++.|++++++|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|.++|. ..|||
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 49999999999877779999999999999999999999999999999999999 9999999985 35999
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHccCC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~~p 193 (266)
+||+.. -+..+.+.++....+....+++.++++++++++-..+. +...|||||||||+||||++.+|
T Consensus 430 VPQd~~---LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 430 VPQDSV---LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eCCccc---ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 999864 34566777776555567889999999999997654433 34579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|+++|||||+||.++..++++.+... +.|+|+|-|+++.+.. ||+|+++++|++. ..|+.+++..
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~-e~gth~ell~ 574 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVK-EYGTHSELLA 574 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeE-EeccHHHHhh
Confidence 999999999999999999999998763 5799999999999985 9999999999997 4688888765
No 273
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=329.67 Aligned_cols=260 Identities=44% Similarity=0.803 Sum_probs=218.0
Q ss_pred HHHHHhh-hhhhHHHHHHHHHHHHhccC---cccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEE
Q 024529 4 FIDKFRY-NAKRASLVQSRIKALERMGH---VDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGI 79 (266)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i 79 (266)
+|.++.. .+..++.++++++.++++.. ......+....+.|+.... .++|.+.+.|++|+|.++..++++++|-|
T Consensus 335 ~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~-~p~pvi~~~nv~F~y~~~~~iy~~l~fgi 413 (614)
T KOG0927|consen 335 LIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGK-IPPPVIMVQNVSFGYSDNPMIYKKLNFGI 413 (614)
T ss_pred HHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccC-CCCCeEEEeccccCCCCcchhhhhhhccc
Confidence 3444443 33445667777776666532 2222222223334444322 34678999999999976667999999999
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC-CcHHHHHHHH
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHL 158 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 158 (266)
..++++++|||||+|||||||+++|.+.|+.|.|.......++++.|+....+++......++...+++ ...+.++.++
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~il 493 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSIL 493 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHH
Confidence 999999999999999999999999999999999998888889988888766677777778887777664 6678899999
Q ss_pred HhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhc
Q 024529 159 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV 238 (266)
Q Consensus 159 ~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~ 238 (266)
.++|++.+....++++||+|||.||.+|++++.+|.+|||||||||||..++..+.++|.++.++||+||||..++..++
T Consensus 494 grfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVa 573 (614)
T KOG0927|consen 494 GRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVA 573 (614)
T ss_pred HHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 239 EELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 239 d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
+++++..+|.+..+.|.+..|.....
T Consensus 574 eEi~~c~~~~~~~~~G~i~~yk~~l~ 599 (614)
T KOG0927|consen 574 EEIWVCENGTVTKWDGDIEIYKEHLK 599 (614)
T ss_pred HHhHhhccCceeecCccHHHHHHHHH
Confidence 99999999999899999999976554
No 274
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.5e-43 Score=291.91 Aligned_cols=158 Identities=32% Similarity=0.626 Sum_probs=134.3
Q ss_pred EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
|+++|++++|++. ..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999642 46899999999999999999999999999999999999999999998763 24677
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
++|++. +. ..+..+++ |||||+||++|||||+.+|++|||||||+
T Consensus 81 ~~q~~~--~~-~~tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 81 LPQDDE--LF-SGSIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred ECCCCc--cc-cCcHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 777642 11 11222111 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 204 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 204 ~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
+||+.++..+.+.+.+. +.|||++|||.+++. +||++++|++|++
T Consensus 126 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 126 HLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 99999999988887653 469999999999985 7999999999874
No 275
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-43 Score=306.78 Aligned_cols=201 Identities=19% Similarity=0.256 Sum_probs=164.2
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe-----------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK----------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~----------- 118 (266)
+|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.. |++|+|.+++.
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 589999999995 4569999999999999999999999999999999999864 48999987763
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHHh--CCC-C----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-V----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 186 (266)
..++|++|++... . .+..+++... ... . ..+++.++++.+++.+ ...++++..|||||+||++||
T Consensus 82 ~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 82 LRKKVGMVFQKPNPF-P--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecCCccC-c--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 2489999986321 1 2444444211 111 1 1245667788888743 234678899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|++|||||||++||+.++..+.+.|.+. +.|||++||+++++..+||++++|++|++. ..|+.+++.
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII-ESGLTDQIF 233 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEE-EeCCHHHHH
Confidence 9999999999999999999999999998888754 468999999999999999999999999996 678887764
No 276
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-43 Score=328.46 Aligned_cols=202 Identities=22% Similarity=0.309 Sum_probs=161.5
Q ss_pred CCcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccC
Q 024529 53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~ 130 (266)
.++++++|+++.|+++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++... ++.+..
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~-- 94 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISS-- 94 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEecc--
Confidence 4589999999999653 3589999999999999999999999999999999999999999999987642 111111
Q ss_pred CCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529 131 GLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204 (266)
Q Consensus 131 ~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~ 204 (266)
.+....+..+++.. ...... .+.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~-~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK-FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh-HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 11112233333321 111222 234567888999964 45788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 205 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 205 LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+.++..+++.|.+. +.|||+||||++++..+||++++|++|++. ..|+++++.
T Consensus 174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv-~~G~~~el~ 231 (549)
T PRK13545 174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK-EYGDIKEVV 231 (549)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999888887654 579999999999999999999999999996 567766554
No 277
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-43 Score=292.40 Aligned_cols=161 Identities=29% Similarity=0.451 Sum_probs=134.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA 122 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~ 122 (266)
|+++|+++.|+ ++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 47899999995 456999999999999999999999999999999999999999999987663 1366
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
|++|++. +....+..+++. + .|||||+||++|||||+.+|++|||||||
T Consensus 80 ~~~q~~~--~~~~~t~~~~l~-------------------~----------~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 80 MVFQDFA--LFPHLTVLENIA-------------------L----------GLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred EEecCCc--cCCCCCHHHhee-------------------e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 6666542 111112211110 0 09999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 203 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
++||+.++..+.+.+.+. +.|+|++|||++++..+||++++|++|+
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999988877653 5799999999999999999999999884
No 278
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=8.9e-43 Score=336.09 Aligned_cols=202 Identities=25% Similarity=0.414 Sum_probs=169.0
Q ss_pred CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
..|+++||+++|+++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 359999999999642 46899999999999999999999999999999999999999999998873 25
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~ 190 (266)
++|++|++. .+..+..+++....+..+++++.++++.+++.+... ......||||||||++||||++
T Consensus 416 i~~~~Q~~~---lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 416 MALVPQDPV---LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred ceEEccCCc---cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 999999874 234566666654333456777888888877643221 1234679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|++||||||||+||+.+.+.+++.+.+. +.|+|+|||+.+.+. .||++++|++|+++ ..|+++++.
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~-~~g~~~~l~ 562 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIV-AQGTHAELI 562 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-eeecHHHHH
Confidence 999999999999999999999998888765 579999999998876 69999999999997 568877764
No 279
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-44 Score=308.79 Aligned_cols=186 Identities=22% Similarity=0.317 Sum_probs=156.3
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeEEEEeccccCCCCCC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~~ 135 (266)
-++|+||+|+.||++.|+|-||||||||+|+|.++++|++|+|.+++. .+++++||.+- +.+.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPh 120 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPH 120 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccc
Confidence 478999999999999999999999999999999999999999998874 36899999853 3334
Q ss_pred CcHHHHHHHhC--CC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529 136 SNPLLYMMRCF--PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209 (266)
Q Consensus 136 ~~~~~~~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~ 209 (266)
.+++++..... .+ ..++++.++|+.+|+.+ +.++++.+|||||||||.|||||+.+|+|||+|||||+|||--
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~-~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEG-YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence 45555543211 12 23567888999999985 5678999999999999999999999999999999999999977
Q ss_pred HHHHHHHH----hhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 210 VEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 210 ~~~l~~~l----~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+.++.+.| ++.++|||+||||++++.++.|||.+|++|+++ -.|+++++.
T Consensus 200 R~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~iv-Q~Gtp~eIl 253 (386)
T COG4175 200 RTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIV-QVGTPEEIL 253 (386)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEE-EeCCHHHHH
Confidence 66665554 445789999999999999999999999999997 468877753
No 280
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.3e-43 Score=298.16 Aligned_cols=182 Identities=26% Similarity=0.419 Sum_probs=148.3
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEe
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS 125 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~ 125 (266)
|+++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 47899999995 457999999999999999999999999999999999999999999998774 2478999
Q ss_pred ccccCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 126 QHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
|+.. +....+..+++.. .........+.++++.+++.+ ..++++.+|||||+||++||||++.+|+++||||||+
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 80 HLPG--LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cCcc--cccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8743 2222344444321 111222446788999999974 4578899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEE
Q 024529 204 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWV 243 (266)
Q Consensus 204 ~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~ 243 (266)
+||+.++..+.+.+.++ +.|||++||+...+ .|++++.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 99999999998888654 57999999998655 3677654
No 281
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-44 Score=336.31 Aligned_cols=204 Identities=26% Similarity=0.415 Sum_probs=173.5
Q ss_pred CCcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------e
Q 024529 53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 119 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~ 119 (266)
...|+++||+|.||.. .++|+|+||+|+|||++||+||||+||||+.++|..+|.|++|+|..+|. .
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 3469999999999864 35999999999999999999999999999999999999999999999884 3
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral 189 (266)
.||++.|+|.. +..+..+++.......++++++.+.+..+-++... ..+..+||||||||+||||||
T Consensus 543 ~Ig~V~QEPvL---Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL 619 (716)
T KOG0058|consen 543 KIGLVGQEPVL---FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619 (716)
T ss_pred Heeeeecccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence 69999999853 34566777766555677888888777665543322 234568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+++|.||||||.||+||.++...+.+.|.+. +.|||+|.|++..++. ||+|+++++|+++ ..|+.+++.+
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~ 691 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLS 691 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhh
Confidence 9999999999999999999999888888653 4799999999999985 9999999999997 5788877654
No 282
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-43 Score=305.41 Aligned_cols=193 Identities=22% Similarity=0.277 Sum_probs=151.4
Q ss_pred EEcCCCCcceeeceEEEe-----CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCc
Q 024529 63 FGYPGGPILFKNLNFGID-----LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN 137 (266)
Q Consensus 63 ~~y~~~~~~l~~vsl~i~-----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~ 137 (266)
|+|++....+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.+++. .++|++|+.... ...+
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~~--~~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKAD--YEGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccCC--CCCC
Confidence 356544456777777776 79999999999999999999999999999999998875 799999986422 2234
Q ss_pred HHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529 138 PLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215 (266)
Q Consensus 138 ~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~ 215 (266)
..+++..... ........++++.+++.. ..++++.+|||||+|||+|||||+.+|+++||||||++||+.++..+.+
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQ-ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 4444322111 112334677899999974 5678899999999999999999999999999999999999999998888
Q ss_pred HHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE-ecCCChhHH
Q 024529 216 GLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT-PFHGTFHDY 259 (266)
Q Consensus 216 ~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~ 259 (266)
.|++. +.|||+||||++++..+||++++|+++... ...+++.+.
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 77654 579999999999999999999999764432 123444443
No 283
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-44 Score=338.02 Aligned_cols=202 Identities=18% Similarity=0.253 Sum_probs=163.7
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 120 (266)
++.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++++ ..
T Consensus 255 ~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 457999999832 3899999999999999999999999999999999999999999998763 24
Q ss_pred EEEEecccc-CCCCCCCcHHHHHHHh---C--------CC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 121 IAVFSQHHV-DGLDLSSNPLLYMMRC---F--------PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 121 i~~~~q~~~-~~~~~~~~~~~~~~~~---~--------~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
++|++|++. ..+....+..+++... . .. ...+.+.++++.+++.....++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 889999852 1122223444433210 0 00 112457789999999534567899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+.+|+||||||||+|||+.++..+++.|. +.+.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 484 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA-GELAREQAT 484 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence 9999999999999999999999999887764 44679999999999999999999999999986 567666654
No 284
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-43 Score=305.16 Aligned_cols=188 Identities=20% Similarity=0.258 Sum_probs=151.5
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHH--hC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--CF 146 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~ 146 (266)
..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. +++++|... +....+...++.. ..
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~~--~~~~~tv~enl~~~~~~ 112 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISAG--LSGQLTGIENIEFKMLC 112 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEecccC--CCCCCcHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999998875 455555532 1122234433321 11
Q ss_pred CCCcH----HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--
Q 024529 147 PGVPE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-- 220 (266)
Q Consensus 147 ~~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-- 220 (266)
..... +.+..+++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+++.+.++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~ 191 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELGE-FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE 191 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 12222 23455777888864 567889999999999999999999999999999999999999998888877543
Q ss_pred -CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 221 -QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 221 -~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
+.|||++||+++++..+||++++|++|++. ..|+.+++.+.
T Consensus 192 ~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 233 (264)
T PRK13546 192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLPK 233 (264)
T ss_pred CCCEEEEEcCCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHHH
Confidence 679999999999999999999999999997 57888877554
No 285
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.7e-42 Score=333.78 Aligned_cols=202 Identities=22% Similarity=0.337 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++|++|+|+++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 359999999999643 56899999999999999999999999999999999999999999998874 358
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++.. +..+..+++....+..+++++.++++..++.+... ......||||||||++|||||++
T Consensus 392 ~~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 392 AVVSQTPFL---FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred EEEccCCee---ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 999998742 23456666543333456677777887777643221 23356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|++|||||||++||+.+.+.+.+.+.+. +.|+|+|||+++.+. .||++++|++|+++ ..|+.+++.
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 537 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIA-QRGNHDQLA 537 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEE-EecCHHHHH
Confidence 99999999999999999999999988764 579999999999886 59999999999997 578877654
No 286
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-43 Score=336.41 Aligned_cols=200 Identities=23% Similarity=0.336 Sum_probs=160.5
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCe------------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK------------ 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~------------ 118 (266)
..++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++++
T Consensus 257 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 356899999999995 45689999999999999999999999999999999998876 6999988652
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHHh-------CCCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMRC-------FPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra 188 (266)
..++|++|++........+....+... .... ..+++.++++.+++.+...++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 248999997532111111222221110 0011 134678899999997535678999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHHh-hcCEEEEEeCCeEEec
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISG-SVEELWVVSEGKATPF 252 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivtHd~~~~~~-~~d~i~~l~~G~i~~~ 252 (266)
|+.+|++|||||||+|||+.++..+.+.|.++ + .|||+||||++++.. +||++++|++|+++.+
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999998887654 3 369999999999987 5999999999998643
No 287
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.3e-43 Score=298.20 Aligned_cols=187 Identities=24% Similarity=0.345 Sum_probs=149.2
Q ss_pred EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeE
Q 024529 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI 121 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i 121 (266)
.+.|+.+.|+++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999975667999999999999999999999999999999999999999999988652 248
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++.. + ..+..+++.... .....+..++++.+++.+.. .+.++..|||||+||++|||||+.
T Consensus 82 ~~~~q~~~~-~--~~t~~~nl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 82 AYAAQKPWL-L--NATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEcCCCcc-c--cccHHHHHhhcC-cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899998632 1 234555443221 12233445566666653211 235688999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-----HHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQ-----GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~-----~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
+|++|||||||++||+.++..+++ .+++.+.|||++||+.+++. .||++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999887766 33344679999999999986 699999999874
No 288
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-44 Score=288.92 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=165.8
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 118 (266)
+.|+++|+.++| +...+|++|||+.+.|+++.|+|.|||||||+||||.=+..|+.|.|..++.
T Consensus 5 ~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 468999999999 4567999999999999999999999999999999999999999999987663
Q ss_pred ---------eeEEEEeccccCCCCCCCcHHHHHHHh----C---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529 119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRC----F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 182 (266)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR 182 (266)
.+++++||++. +....+.+++.... . .....++++.+|.++|+.+. .+.++..|||||+||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FN--LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek-~~~YP~~LSGGQQQR 160 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFN--LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK-ADAYPAHLSGGQQQR 160 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcc--hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh-hhcCccccCchHHHH
Confidence 13677777642 11222334433221 1 11234567889999999754 567889999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHH---HHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l---~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
++|||||+.+|+++|+|||||+|||+-.-++ +..|.+.+.|+++|||.+.|+..+++++++|++|.+. ..|+++++
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~G~P~qv 239 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EEGPPEQV 239 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-ccCChHHH
Confidence 9999999999999999999999999976655 4555667899999999999999999999999999985 68888876
Q ss_pred H
Q 024529 260 K 260 (266)
Q Consensus 260 ~ 260 (266)
.
T Consensus 240 f 240 (256)
T COG4598 240 F 240 (256)
T ss_pred h
Confidence 3
No 289
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-43 Score=336.80 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=162.2
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------e
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 119 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 119 (266)
++++|+++|+++ .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 265 ~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 456899999983 1589999999999999999999999999999999999999999998764 2
Q ss_pred eEEEEecccc-CCCCCCCcHHHHHHH------hC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 120 RIAVFSQHHV-DGLDLSSNPLLYMMR------CF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 120 ~i~~~~q~~~-~~~~~~~~~~~~~~~------~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
.++|++|++. ..+....+...++.. .. . ....+.+.++++.+++.....++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 4899999742 112222233333211 01 0 111235678899999963346788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
+.+|+||||||||+|||+.++..+.+.|.+ .+.|||+||||++++..+||++++|++|+++ +.|+.+++
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~-~~~~~~~~ 490 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS-GALTGAAI 490 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence 999999999999999999999998887765 4679999999999999999999999999996 45655544
No 290
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=8.5e-43 Score=333.19 Aligned_cols=174 Identities=31% Similarity=0.527 Sum_probs=149.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~ 124 (266)
.|+++||+|+|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 5999999999976556999999999999999999999999999999999999999999999884 369999
Q ss_pred eccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCC
Q 024529 125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
+|++.. +..+..+++....+..+++++.++++..++++.... .....||||||||++|||||+++|+
T Consensus 414 ~Q~~~l---F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 414 AQDAHL---FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred ccCccc---ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 999752 345677776554445678889999999888653322 1245799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDE 231 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~ 231 (266)
|||||||||+||+++...+.+.+.+. +.|+|+|||++
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999865 57999999984
No 291
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-42 Score=303.77 Aligned_cols=202 Identities=16% Similarity=0.215 Sum_probs=159.4
Q ss_pred CCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 53 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
...|+++|++++|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4569999999999642 46899999999999999999999999999999999999999999998763 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc-----------CCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
++|++|++.. + ..+..+++... .......+.++++.+ ++.. ..+.++..|||||+||++|||||
T Consensus 97 i~~v~q~~~l-~--~~tv~~nl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 97 LSIILQDPIL-F--SGSIRFNLDPE-CKCTDDRLWEALEIAQLKNMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred EEEECCCCcc-c--ccHHHHhcCcC-CCCCHHHHHHHHHHhCcHHHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHH
Confidence 8999998632 1 22333332111 011122333333333 3332 23456789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+.+|++|||||||++||+.+...+.+.+.+. +.|||++||+++.+.. ||++++|++|+++ ..|+.+++.+
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~-~~g~~~~~~~ 243 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILV-ECDTPENLLA 243 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999988888653 5799999999999985 9999999999997 5788887754
No 292
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=334.26 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=161.9
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~ 120 (266)
+++++++|+++ .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 255 ~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 45799999984 2689999999999999999999999999999999999999999998763 24
Q ss_pred EEEEecccc-CCCCCCCcHHHHHHH----hCC---C-C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 121 IAVFSQHHV-DGLDLSSNPLLYMMR----CFP---G-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 121 i~~~~q~~~-~~~~~~~~~~~~~~~----~~~---~-~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
++|++|++. ..+....+..+++.. ... . . ..+++.++++.+++.....++++.+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 899999852 112222334333321 000 0 1 13457789999999533467899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 482 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS-GEFTREQA 482 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE-EEeccccC
Confidence 999999999999999999999999988887654 569999999999999999999999999986 45554443
No 293
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-43 Score=295.72 Aligned_cols=183 Identities=23% Similarity=0.313 Sum_probs=151.0
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF 124 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~ 124 (266)
||+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++. ..++|+
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 488999999995 456999999999999999999999999999999999999999999998763 258999
Q ss_pred eccccCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 125 SQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
+|++.. ....+..+++.... .......+.++++.+++.+ ..++++.+|||||+||++||||++.+|++|||||||+
T Consensus 80 ~q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 80 GHRSGI--NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred cccccc--CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 987532 22334444433211 1123456788999999964 4578889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEE
Q 024529 204 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELW 242 (266)
Q Consensus 204 ~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~ 242 (266)
+||+.++..+.+.|.+. +.|||++||+.+++.. ||.-+
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 99999999998888753 5799999999999975 77543
No 294
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.9e-43 Score=292.11 Aligned_cols=170 Identities=26% Similarity=0.380 Sum_probs=141.7
Q ss_pred cEEEEeeEEEcCC-----CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcCe--------e
Q 024529 55 IISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK--------V 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~~--------~ 119 (266)
.|+++|+++.|++ ...+|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999964 257999999999999999999999999999999999999 999999998764 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
.++|++|++. +....+..+++... ..+ .+|||||+||++|||||+.+|++||||
T Consensus 83 ~i~~~~q~~~--~~~~~t~~~~i~~~-------------~~~-----------~~LS~G~~qrv~laral~~~p~illlD 136 (194)
T cd03213 83 IIGYVPQDDI--LHPTLTVRETLMFA-------------AKL-----------RGLSGGERKRVSIALELVSNPSLLFLD 136 (194)
T ss_pred eEEEccCccc--CCCCCcHHHHHHHH-------------HHh-----------ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4888888753 11222333322100 000 189999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeCCeEE
Q 024529 200 EPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKAT 250 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~G~i~ 250 (266)
|||++||+.++..+.+.|.+. +.|||++|||++ .+..+||++++|++|++.
T Consensus 137 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 999999999999988887654 569999999996 688899999999999986
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=303.24 Aligned_cols=183 Identities=25% Similarity=0.385 Sum_probs=158.0
Q ss_pred CcEEEEeeEEEcCCC--------CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEe
Q 024529 54 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS 125 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~ 125 (266)
++++++|+++.|+-+ ..+++||||+|++||++||+|+||||||||-|+|.|+++|++|+|++.++.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~------ 76 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD------ 76 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc------
Confidence 579999999999632 268999999999999999999999999999999999999999999987642
Q ss_pred ccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L 205 (266)
...+. .....+++.++|+.+|+..+..++.+++|||||+||++|||||+.+|+++++|||+|+|
T Consensus 77 ---i~~~~-------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 77 ---ITKLS-------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred ---hhhcc-------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 00000 12234678999999999988889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 206 DLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 206 D~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|...+.++++.|.+ .+.|.+++|||+..+..+|||+.+|..|++++ .|+.+++
T Consensus 141 DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE-~g~~~~~ 197 (268)
T COG4608 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE-IGPTEEV 197 (268)
T ss_pred chhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE-ecCHHHH
Confidence 99988888877754 36799999999999999999999999999974 5655554
No 296
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=332.79 Aligned_cols=205 Identities=18% Similarity=0.249 Sum_probs=162.1
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------ 119 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------ 119 (266)
.+++|+++|+++.| +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++..
T Consensus 247 ~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 247 GEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred CCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 34689999999875 248999999999999999999999999999999999999999999987632
Q ss_pred eEEEEecccc-CCCCCCCcH-----HHHHHHh---CC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529 120 RIAVFSQHHV-DGLDLSSNP-----LLYMMRC---FP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 120 ~i~~~~q~~~-~~~~~~~~~-----~~~~~~~---~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA 186 (266)
.++|++|++. ..+....+. ..++... .. . .....+.++++.+++.....++++.+|||||||||+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 2789998742 111111111 1111111 00 0 11345678899999953346789999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l---~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||+.+|+||||||||+|||+.++..+++.+ .+.+.|||+||||++++..+||++++|++|+++ ..++.++|.
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~ 479 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA-GIVDTKTTT 479 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence 9999999999999999999999999887776 445789999999999999999999999999997 344444443
No 297
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-42 Score=331.95 Aligned_cols=195 Identities=23% Similarity=0.277 Sum_probs=159.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
.++++|++|+|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 5999999999975556899999999999999999999999999999999999999999998874 25899
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc--C--CCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--Q--PMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~--~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
++|++... ..+...+ ....+++.+.++++.+++...... . ....||||||||++|||||+++|++||||
T Consensus 402 v~q~~~lf---~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 402 VFTDFHLF---DQLLGPE----GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred EecChhHH---HHhhccc----cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99986421 1111111 123446677888888888643211 1 14589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
|||++||+.+...+.+.+.+ .+.|+|+|||+++.+. .||++++|++|++.+..|+..
T Consensus 475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 99999999999988877652 3679999999998876 699999999999987766643
No 298
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-45 Score=296.59 Aligned_cols=202 Identities=22% Similarity=0.363 Sum_probs=168.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~ 123 (266)
|++++||++.| +.+.+++++|++|++|.+++|+||||+||||||.+++.+.++++|+|++++.. .++.
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 68999999999 56789999999999999999999999999999999999999999999988753 2445
Q ss_pred EeccccCCCCCCCcHHHHHH-HhCC-------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 124 FSQHHVDGLDLSSNPLLYMM-RCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+-|++.. ....++.+... ..++ ..+...+.++++.+++. ++.++...+||||||||..||..++++.+.
T Consensus 80 LkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 80 LKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcE
Confidence 5555421 12222222111 1111 23456788999999997 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
++||||.|+||.....++++.|++ .++||++|-||.+|+..++|+|+-|++|+++ ..|+++++.+
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii~ 225 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEIIQ 225 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhcC
Confidence 999999999999988888887754 5889999999999999999999999999996 7899998754
No 299
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=6.7e-43 Score=294.48 Aligned_cols=172 Identities=24% Similarity=0.365 Sum_probs=142.0
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCee------------eE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV------------RI 121 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~------------~i 121 (266)
|+++|+++.|+ +..+|+|+||++.+||+++|+||||||||||+++|+|+ ++|++|+|.+++.. .+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 47899999995 45799999999999999999999999999999999999 57999999987631 37
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
+|++|++... ...+ +.+.+ +....+|||||+||++|||||+.+|++||||||
T Consensus 80 ~~v~q~~~~~--~~~~----------------~~~~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 80 FLAFQYPPEI--PGVK----------------NADFL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred EEeecChhhc--cCcc----------------HHHHH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 7888764211 1111 11111 123368999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHh-hcCEEEEEeCCeEEecCCChh
Q 024529 202 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISG-SVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~-~~d~i~~l~~G~i~~~~g~~~ 257 (266)
|++||+.++..+.+.|.+. +.|||++||+++++.. +||++++|++|++. ..|+.+
T Consensus 132 t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 190 (200)
T cd03217 132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIV-KSGDKE 190 (200)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEE-EEccHH
Confidence 9999999999998888654 5699999999999988 79999999999996 556544
No 300
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7.9e-43 Score=303.32 Aligned_cols=193 Identities=26% Similarity=0.384 Sum_probs=157.1
Q ss_pred EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEEEe
Q 024529 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAVFS 125 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~~~ 125 (266)
+++||++. .+|+|+||+|++|++++|+||||||||||+++|+|+++ .+|+|.+++.. .++|++
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEec
Confidence 56788874 27899999999999999999999999999999999985 48999987741 389999
Q ss_pred ccccCCCCCCCcHHHHHHHhCC-CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc-------CC
Q 024529 126 QHHVDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-------KP 193 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~-------~p 193 (266)
|++... ...+...++..... .. ..+++.++++.+++.+ ..++++.+||||||||++|||||+. +|
T Consensus 76 q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 76 QQQTPP--FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ccCccC--CCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 975322 22344444332111 11 1346788999999964 4578899999999999999999997 67
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
++|||||||++||+.++..+.+.|.+. +.|||++|||++++..+||++++|++|+++ ..|+.+++
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 220 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL-ASGRRDEV 220 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999988887654 569999999999999999999999999996 56777665
No 301
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-42 Score=290.87 Aligned_cols=170 Identities=23% Similarity=0.323 Sum_probs=141.0
Q ss_pred cEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcCee-------eEE
Q 024529 55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAKV-------RIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~~~-------~i~ 122 (266)
.|+++|+++.|++ ++.+|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++.. .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 6899999999964 256899999999999999999999999999999999986 4899999987742 588
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
|++|++. +....+..+++... ..+ .+|||||+||++|||||+.+|++|||||||
T Consensus 83 ~~~q~~~--~~~~~tv~~~l~~~----------~~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~ 136 (192)
T cd03232 83 YVEQQDV--HSPNLTVREALRFS----------ALL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPT 136 (192)
T ss_pred EecccCc--cccCCcHHHHHHHH----------HHH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence 9988753 22222343333210 000 089999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeC-CeEE
Q 024529 203 NHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSE-GKAT 250 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~ 250 (266)
++||+.++..+++.+.+. +.|||++||+.+ .+..+||++++|++ |+++
T Consensus 137 ~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 137 SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 999999999998887654 579999999998 47789999999999 9986
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-42 Score=286.04 Aligned_cols=157 Identities=31% Similarity=0.580 Sum_probs=133.2
Q ss_pred EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529 56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (266)
Q Consensus 56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~ 123 (266)
|+++|+++.|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.. .++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999643 268999999999999999999999999999999999999999999987742 3667
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
++|++. + +..+..+++ |||||+||++|||||+.+|++|||||||+
T Consensus 81 ~~~~~~--~-~~~t~~e~l--------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~ 125 (171)
T cd03228 81 VPQDPF--L-FSGTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILDEATS 125 (171)
T ss_pred EcCCch--h-ccchHHHHh--------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 776642 1 111111110 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 204 HLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 204 ~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
+||+.++..+.+.+.+. +.|||++|||.+++.. ||++++|++|+
T Consensus 126 gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 126 ALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999998888764 4689999999999987 99999999885
No 303
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.6e-43 Score=346.02 Aligned_cols=204 Identities=27% Similarity=0.419 Sum_probs=173.6
Q ss_pred CCcEEEEeeEEEcCCCC--cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------e
Q 024529 53 PPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V 119 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~ 119 (266)
...++++||+|+||..+ .+|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|.++|. .
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 34699999999998653 6899999999999999999999999999999999999999999999874 3
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral 189 (266)
.||.+.|+|. -+..+..+++....++...+++.++++..+..+... ....-+||||||||+||||||
T Consensus 428 ~iglV~QePv---lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 428 QIGLVSQEPV---LFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred hcCeeeechh---hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence 6999999984 234567777766555667788888777665433221 123457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+.+|+|||||||||+||+++.+.+.+.|.+. +.|.|+|+|++..+.+ +|+|++|++|+++ ..|+.+++..
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~Iv-E~G~h~ELi~ 576 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIV-EQGTHDELIA 576 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEE-EecCHHHHHh
Confidence 9999999999999999999999999998764 6799999999999997 9999999999997 5788888754
No 304
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-42 Score=291.04 Aligned_cols=176 Identities=16% Similarity=0.230 Sum_probs=143.0
Q ss_pred cEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC---CCceEEEEcCe----------
Q 024529 55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK---------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---------- 118 (266)
.+.++|++|.|+. ++.+|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5889999999963 4579999999999999999999999999999999999999 89999988764
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 198 (266)
..++|++|++. +....+..+++.... . .. .++++..|||||+||++|||||+.+|++|||
T Consensus 83 ~~i~~~~q~~~--~~~~~tv~~~l~~~~------~-------~~-----~~~~~~~LS~Ge~qrl~laral~~~p~llll 142 (202)
T cd03233 83 GEIIYVSEEDV--HFPTLTVRETLDFAL------R-------CK-----GNEFVRGISGGERKRVSIAEALVSRASVLCW 142 (202)
T ss_pred ceEEEEecccc--cCCCCcHHHHHhhhh------h-------hc-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 24889998753 222234444432110 0 00 3467789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHhhc----CCEEEE-EecCHHHHHhhcCEEEEEeCCeEE
Q 024529 199 DEPSNHLDLDAVEALIQGLVLF----QGGILM-VSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~~----~~tiii-vtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
||||++||+.++..+.+.+.+. +.++|+ ++|+.+.+..+||++++|++|+++
T Consensus 143 DEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 143 DNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 9999999999999988887653 346555 556678888899999999999986
No 305
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9e-42 Score=301.42 Aligned_cols=198 Identities=25% Similarity=0.395 Sum_probs=155.4
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (266)
.+.|+++|+++. + +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++...
T Consensus 37 ~~~l~i~nls~~--~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~l~- 110 (282)
T cd03291 37 DNNLFFSNLCLV--G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSWIM- 110 (282)
T ss_pred CCeEEEEEEEEe--c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccccc-
Confidence 457999999985 2 4589999999999999999999999999999999999999999999887 589999986421
Q ss_pred CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 133 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
..+..+++.... .....++.+.++.+++.+. ....++.+|||||+||++|||||+.+|++|||||||
T Consensus 111 --~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 111 --PGTIKENIIFGV-SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred --ccCHHHHhhccc-ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 124555443211 1122233444444444321 112345799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-hh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 203 NHLDLDAVEALIQGL-VL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l-~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
++||+.++..+.+.+ .. .+.|||++|||++++. .||++++|++|+++ +.|+.+++.+
T Consensus 188 ~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 247 (282)
T cd03291 188 GYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQS 247 (282)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999998887643 32 2579999999999985 79999999999986 5788777653
No 306
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.2e-42 Score=326.79 Aligned_cols=186 Identities=28% Similarity=0.471 Sum_probs=158.4
Q ss_pred cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
.|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 59999999999754 36899999999999999999999999999999999999999999998874 2599
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++.. +..+..+++....+..+++++.++++..++.+.... ....+||||||||++|||||+++
T Consensus 400 ~v~Q~~~l---f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 400 WVPQHPFL---FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred EEcCCCcc---cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 99999742 345666666543344567788888888887643322 23568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEE
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
|++|||||||++||+.+.+.+.+.+.+. +.|+|+|||+++.+. .||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999999999988875 579999999999986 69999875
No 307
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.8e-42 Score=295.34 Aligned_cols=181 Identities=30% Similarity=0.454 Sum_probs=148.5
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEeccccCCCCCCCcHHHHHHHh-----
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVDGLDLSSNPLLYMMRC----- 145 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q~~~~~~~~~~~~~~~~~~~----- 145 (266)
|+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++........+...++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999875 359999998632222223444433211
Q ss_pred --C--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 024529 146 --F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF 220 (266)
Q Consensus 146 --~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 220 (266)
. . ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTE-LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0 0 112345788899999974 457788999999999999999999999999999999999999999998888653
Q ss_pred ---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 221 ---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 221 ---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+.|||++|||++++..+||+++++ +|+++ ..|+.+++.
T Consensus 160 ~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~ 200 (223)
T TIGR03771 160 AGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQ 200 (223)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhc
Confidence 569999999999999999999999 79996 678877763
No 308
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-42 Score=317.76 Aligned_cols=194 Identities=22% Similarity=0.324 Sum_probs=164.7
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------e
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------R 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~ 120 (266)
.++++++|++|+|+ +..+|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++|+. .
T Consensus 6 ~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 45899999999995 5679999999999999999999999999999999999999999999998862 5
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhC-C-----CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCF-P-----GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~-~-----~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
|..++|+.. +....++.+++.... + -. ..+++.++|+.+++... .+.++.+||.||||.|+|||||.
T Consensus 85 I~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 85 IATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred cEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHh
Confidence 899999864 233344555543211 0 11 23567888999998633 67899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
.+++||||||||++|+....+.+++.++ +.+.+||+|||.++++..+||||.||.+|+.+
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence 9999999999999999998888777665 45679999999999999999999999999986
No 309
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.8e-42 Score=331.83 Aligned_cols=191 Identities=26% Similarity=0.305 Sum_probs=160.8
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
+.++++++|+++.|+ +. .|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++ ..++|++|+...
T Consensus 337 ~~~~l~~~~ls~~~~-~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~~- 411 (590)
T PRK13409 337 RETLVEYPDLTKKLG-DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIKP- 411 (590)
T ss_pred CceEEEEcceEEEEC-CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEecccccC-
Confidence 356899999999995 33 5899999999999999999999999999999999999999999876 579999998642
Q ss_pred CCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 024529 132 LDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210 (266)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~ 210 (266)
....++.+++...... .....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 412 -~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~ 489 (590)
T PRK13409 412 -DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 489 (590)
T ss_pred -CCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 2334455444321111 1234567899999997 457889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 211 EALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 211 ~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
..+.+.|+++ +.|||+||||++++..+||++++|++ ++.
T Consensus 490 ~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 490 LAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 9998888754 67999999999999999999999965 653
No 310
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-41 Score=356.28 Aligned_cols=202 Identities=18% Similarity=0.296 Sum_probs=171.3
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|. .++
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 359999999999543 57999999999999999999999999999999999999999999999874 369
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~ 191 (266)
+++||++.. +..+..+++.. ....+++++.++++..++.+.... .....||||||||++|||||++
T Consensus 1313 ~iVpQdp~L---F~gTIr~NL~~-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1313 SIIPQSPVL---FSGTVRFNIDP-FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred EEECCCCee---eCccHHHHcCC-CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999753 23456665532 224567788889988887543322 2346899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|+|||||||||+||+++...+.+.+++. +.|+|+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~iv-E~Gt~~eLl~ 1458 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVL-EYDSPQELLS 1458 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999988764 5799999999999986 9999999999997 4688888754
No 311
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.1e-42 Score=357.63 Aligned_cols=207 Identities=22% Similarity=0.291 Sum_probs=174.1
Q ss_pred CCcEEEEeeEEEcC-CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeE
Q 024529 53 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 121 (266)
Q Consensus 53 ~~~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i 121 (266)
...|+++||++.|+ +++.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 45799999999995 3467999999999999999999999999999999999999999999998774 258
Q ss_pred EEEeccccCCCCCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
||++|++... ...++.+.+. ....+. .++++.++++.+++.+ ..++++++|||||||||+||+||+.+|+|
T Consensus 1006 G~~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1006 GMCPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-KRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred EEEecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986422 2233433332 111122 2356788999999974 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 263 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 263 (266)
|||||||+|||+.+++.+++.|++. +.|||++|||++++..+|||+++|++|+++ ..|+.+++.+..
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~-~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLY-CSGTPLFLKNCF 1151 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHHHHhc
Confidence 9999999999999999999888765 569999999999999999999999999996 679988876543
No 312
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-41 Score=354.20 Aligned_cols=203 Identities=23% Similarity=0.339 Sum_probs=172.9
Q ss_pred cEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC------------------------
Q 024529 55 IISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP------------------------ 108 (266)
Q Consensus 55 ~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p------------------------ 108 (266)
.|+++||+|+|++ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 5999999999974 24699999999999999999999999999999999999998
Q ss_pred ------------------------------CceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529 109 ------------------------------SSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFP 147 (266)
Q Consensus 109 ------------------------------~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 147 (266)
++|+|.++|. ..++|++|++.. +..+..+++....+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L---F~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML---FNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc---ccccHHHHHhcCCC
Confidence 6999999874 359999999753 34567777765444
Q ss_pred CCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529 148 GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217 (266)
Q Consensus 148 ~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l 217 (266)
..+++++.++++..++++.... .....||||||||++|||||+++|+|||||||||+||+++.+.+.+.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 5678889999988887543322 234679999999999999999999999999999999999999999988
Q ss_pred hhc----CCEEEEEecCHHHHHhhcCEEEEEeC----CeEEecCCChhHHHH
Q 024529 218 VLF----QGGILMVSHDEHLISGSVEELWVVSE----GKATPFHGTFHDYKK 261 (266)
Q Consensus 218 ~~~----~~tiiivtHd~~~~~~~~d~i~~l~~----G~i~~~~g~~~~~~~ 261 (266)
.+. +.|+|+|||+++.+. .||+|++|++ |+++...|+.+++.+
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 765 569999999999987 5999999999 896546799888764
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8e-42 Score=357.69 Aligned_cols=207 Identities=23% Similarity=0.310 Sum_probs=172.6
Q ss_pred CCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeE
Q 024529 53 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI 121 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i 121 (266)
..+|+++|+++.|+++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|. ..+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 4579999999999642 57999999999999999999999999999999999999999999998773 249
Q ss_pred EEEeccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
||++|..... ...+..+.+. ....+.. ++.+.++++.+++.+ ..++++++|||||||||+||+||+.+|+|
T Consensus 2015 Gy~pQ~~~L~--~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~-~~dk~~~~LSGGqKqRLslA~ALi~~P~V 2091 (2272)
T TIGR01257 2015 GYCPQFDAID--DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALIGCPPL 2091 (2272)
T ss_pred EEEeccccCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999985322 2223333321 1111222 234667899999974 56789999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 263 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 263 (266)
|||||||+|||+.+++.+++.+.+. +.|||++||++++++.+|||+++|++|+++ ..|+.+++....
T Consensus 2092 LLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2092 VLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHh
Confidence 9999999999999999998877653 569999999999999999999999999997 679988876543
No 314
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.4e-41 Score=326.32 Aligned_cols=190 Identities=18% Similarity=0.208 Sum_probs=155.6
Q ss_pred CcEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------
Q 024529 54 PIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------- 118 (266)
..|+++||+|+|++. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 359999999999642 25899999999999999999999999999999999999999999998874
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC-----CCCCChHHHHHHHHHHHHccCC
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqRv~lAral~~~p 193 (266)
..++|++|++... ..+...+. .+...++++.++++.+++.+.....| ...||||||||++||||++.+|
T Consensus 416 ~~i~~v~q~~~lf---~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~ 489 (555)
T TIGR01194 416 DLFSAIFADFHLF---DDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDR 489 (555)
T ss_pred hhCcEEccChhhh---hhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2488999986421 11111111 12345677888999999875433222 3579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
++|||||||++||+.+.+.+.+.+. ..+.|+|+|||+++.+. .||+|++|++|+++
T Consensus 490 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 490 PILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIV 549 (555)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE
Confidence 9999999999999999998876542 34679999999998775 79999999999986
No 315
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-41 Score=354.69 Aligned_cols=202 Identities=18% Similarity=0.282 Sum_probs=171.5
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++||+++|+++ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++|. .++
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 469999999999644 46999999999999999999999999999999999999999999999884 469
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~ 191 (266)
+++||++.. +..+..+++... ...+++++.++++..++.+.... .....||||||||++|||||++
T Consensus 1316 siVpQdp~L---F~GTIreNLd~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1316 GIIPQAPVL---FSGTVRFNLDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred EEECCCCcc---ccccHHHHhCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 999999752 234566665322 24567788899988877543322 2245899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|+|||||||||+||.++...+.+.|++. ++|+|+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~Iv-E~Gt~~eLl~ 1461 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVV-EFDTPENLLS 1461 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999998764 5799999999999985 9999999999997 4688888754
No 316
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-42 Score=280.15 Aligned_cols=194 Identities=26% Similarity=0.383 Sum_probs=160.1
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEec
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ 126 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q 126 (266)
+++.+++++.+|++. ..+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|..+++. .-|.+||
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 467889999999643 248999999999999999999999999999999999999999999988863 5789999
Q ss_pred cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
+.. +....+..++.... ..+. ..+.+.+.+..+|+.+ ..++.+-+||||||||+.|||||+.+|++|+|||
T Consensus 82 ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE 158 (259)
T COG4525 82 NEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE 158 (259)
T ss_pred cCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-ccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence 863 22333444443211 1122 2345677899999975 4578899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeC--CeEE
Q 024529 201 PSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSE--GKAT 250 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~--G~i~ 250 (266)
|+++||.-+++.+.+.|. +.++.+++||||.+++.-+++++++|+. |+++
T Consensus 159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv 214 (259)
T COG4525 159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214 (259)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceee
Confidence 999999999887766553 4577899999999999999999999985 6775
No 317
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=292.78 Aligned_cols=200 Identities=29% Similarity=0.450 Sum_probs=161.7
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------e
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 119 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 119 (266)
.+++|+++|+++.| +++.+|+|+|++|++||..+|+|||||||||||++++|.++|++|.+...|+ .
T Consensus 28 ~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 45689999999999 5678999999999999999999999999999999999999999999876553 3
Q ss_pred eEEEEeccccCCCCCCCcHHHHHH-------HhCC-C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMM-------RCFP-G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~-------~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra 188 (266)
+||++.......+....+..+.+. ..+. . ...+++..+++.+|+.. +.+++..+||-||||||.||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaRA 185 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQGEQRRVLIARA 185 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHhHHHHHHHHHH
Confidence 577776432111111111111110 0111 1 23456788899999974 7889999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCC
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ-----GGILMVSHDEHLISGSVEELWVVSEGKATPFHG 254 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g 254 (266)
|+.+|++|||||||+|||...++.+.+.|.+.. .++|+|||..+++..+.++++.+++|+++ +.|
T Consensus 186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~-~~g 255 (257)
T COG1119 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV-AQG 255 (257)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee-ecc
Confidence 999999999999999999999999988887642 36999999999999999999999999996 444
No 318
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.2e-42 Score=287.89 Aligned_cols=165 Identities=34% Similarity=0.518 Sum_probs=133.6
Q ss_pred CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeEEEEeccccCCCC
Q 024529 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIAVFSQHHVDGLD 133 (266)
Q Consensus 67 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~~~~q~~~~~~~ 133 (266)
+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++...+.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4556899999999999999999999999999999999999999999987663 148999998621111
Q ss_pred CCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529 134 LSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207 (266)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~ 207 (266)
..+..+++... ..... .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||++||+
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 22444443211 11111 245778899999974 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc---CCEEEEEecCHHH
Q 024529 208 DAVEALIQGLVLF---QGGILMVSHDEHL 233 (266)
Q Consensus 208 ~~~~~l~~~l~~~---~~tiiivtHd~~~ 233 (266)
.++..+.+.|.+. +.|||+||||+++
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999988887654 5699999999875
No 319
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.5e-41 Score=329.83 Aligned_cols=188 Identities=23% Similarity=0.339 Sum_probs=160.2
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.+|+++|+++.|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|..+++..++|++|++...
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~-- 527 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT-- 527 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC--
Confidence 469999999999655579999999999999999999999999999999999999999999988777899999987422
Q ss_pred CCCcHHHHHHHhC-------CCCcHHHHHHHHHhcCCCcccccCC---------CCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 134 LSSNPLLYMMRCF-------PGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 134 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
..+..+++.... .....+++.++++.+++.+. .+++ ..+||||||||++|||||+.+|+++|
T Consensus 528 -~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 528 -LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHI-LEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred -CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHH-HhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 225555543211 12346678889999998653 3333 37899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 198 LDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
|||||++||+.+...+.+.+++.+.|+|+|||+++.+. +||++++|+.
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~-~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK-YHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH-hCCEEEEEeC
Confidence 99999999999999999999888889999999999875 7999999963
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.7e-42 Score=286.50 Aligned_cols=181 Identities=26% Similarity=0.327 Sum_probs=146.8
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------eeEEEEecc
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQH 127 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~ 127 (266)
+|+++|++++|+ ++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|.
T Consensus 1 ~l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 478999999995 455555 99999999999999999999999999999999999999998874 247888887
Q ss_pred ccCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529 128 HVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206 (266)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD 206 (266)
+. +....+..+++..... ....+++.++++.+++.+ ..++++.+|||||+||++||||++.+|++|||||||++||
T Consensus 79 ~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 79 LG--LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cC--CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 52 2233344444422110 113456778889999964 4578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEE
Q 024529 207 LDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEEL 241 (266)
Q Consensus 207 ~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i 241 (266)
+.++..+.+.+.+ .+.|||++||+.+++.. +|-+
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 9999998887753 35799999999998875 6654
No 321
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.8e-41 Score=331.96 Aligned_cols=208 Identities=23% Similarity=0.382 Sum_probs=159.7
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC---CCCceEEEEcCeee---------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFRSAKVR--------- 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~~~~~--------- 120 (266)
..+|+++|++++|+ +..+|+|+||+|.+|+++||+||||||||||||+|+|.. .|++|+|.+..+..
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 45799999999995 456999999999999999999999999999999999964 46777764321100
Q ss_pred ----------------EEEEeccccCCC-CC------------CCcH----HHHHHH---hC-CCCcHHHHHHHHHhcCC
Q 024529 121 ----------------IAVFSQHHVDGL-DL------------SSNP----LLYMMR---CF-PGVPEQKLRAHLGSFGV 163 (266)
Q Consensus 121 ----------------i~~~~q~~~~~~-~~------------~~~~----~~~~~~---~~-~~~~~~~~~~~l~~~~l 163 (266)
+++++|.+.... .. .... +..... .. ....+.++.++|..+|+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 111111100000 00 0000 000000 00 00124566778888998
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEE
Q 024529 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWV 243 (266)
Q Consensus 164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~ 243 (266)
.+...++++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++.|||+||||++++..+||++++
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 65556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEecCCChhHHHH
Q 024529 244 VSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 244 l~~G~i~~~~g~~~~~~~ 261 (266)
|++|++..+.|+++.|.+
T Consensus 414 l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 414 LHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EECCEEEEeCCCHHHHHH
Confidence 999999778999988754
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-41 Score=280.88 Aligned_cols=155 Identities=25% Similarity=0.298 Sum_probs=132.3
Q ss_pred EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcH
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNP 138 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~ 138 (266)
.|+++.|+ +..++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .++|++|...
T Consensus 4 ~~l~~~~~-~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-~i~~~~q~~~--------- 71 (177)
T cd03222 4 PDCVKRYG-VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-TPVYKPQYID--------- 71 (177)
T ss_pred CCeEEEEC-CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-EEEEEcccCC---------
Confidence 58899995 4567888 4999999999999999999999999999999999999998764 4777776421
Q ss_pred HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 024529 139 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 218 (266)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 218 (266)
||||||||++|||||+.+|+++||||||++||+.++..+.+.+.
T Consensus 72 ------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 72 ------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR 115 (177)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888776
Q ss_pred hc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE-ecCCChhHHHH
Q 024529 219 LF----QGGILMVSHDEHLISGSVEELWVVSEGKAT-PFHGTFHDYKK 261 (266)
Q Consensus 219 ~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~~~ 261 (266)
+. +.|||+||||++++..+||++++|+++..+ ...|++..+++
T Consensus 116 ~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 163 (177)
T cd03222 116 RLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE 163 (177)
T ss_pred HHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence 53 369999999999999999999999886543 22255544443
No 323
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.5e-41 Score=307.82 Aligned_cols=193 Identities=21% Similarity=0.347 Sum_probs=166.2
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
+.+++++++|.|+ +..++++|||+|++||+.||+|+||+|||||+++|.|+++|++|+|+++|+ ..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4689999999996 677999999999999999999999999999999999999999999999986 359
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCC-----C----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFP-----G----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|+++|++... .+.++.+++..... . ...+++.++.+++|++-+ .+.++.+||-||||||.|.+||.++
T Consensus 82 GMVhQHF~Lv--~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-p~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 82 GMVHQHFMLV--PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cEEeeccccc--cccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-ccceeecCCcchhHHHHHHHHHhcC
Confidence 9999997432 23344444432211 1 235678888999999744 5689999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|++|||||||+-|-|...+++++.+++ .++|||+|||.++++.++|||+.+|..|+++
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 999999999999999999998887764 4789999999999999999999999999975
No 324
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.5e-43 Score=277.37 Aligned_cols=193 Identities=22% Similarity=0.343 Sum_probs=158.5
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF 124 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 124 (266)
++++++.+.- ++.++|+++||++.+||+++|+||||||||||+|+++-++.|++|++++.|. ..++|+
T Consensus 4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 4556665444 3457999999999999999999999999999999999999999999999875 357888
Q ss_pred eccccCC-CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 125 SQHHVDG-LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 125 ~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
.|.+... -++..|............+...+...++++++.+....+++.+||||||||++|+|-|..-|+|||||||||
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 8886421 112222211111122245677788999999999888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 204 HLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 204 ~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
+||+.+.+.+.+.+..+ ..+++.||||.+...+.+|+++.+..|++
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999988877766543 56899999999998889999999999876
No 325
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.9e-41 Score=350.62 Aligned_cols=202 Identities=18% Similarity=0.279 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++||+++|+++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++|. .++
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 469999999999654 46999999999999999999999999999999999999999999999884 369
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~ 191 (266)
+++||++.. +..+..+++.. +...+++++.++++.+++.+.... .....||||||||++|||||++
T Consensus 1363 ~iVpQdp~L---F~gTIr~NLdp-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1363 TIIPQDPVL---FSGSLRMNLDP-FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred eEECCCCcc---cCccHHHHcCc-ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 999999752 23455555521 224567888899998887543221 2346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|+|||||||||+||.++...+.+.|++. +.|+|+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~Iv-E~G~~~eLl~ 1508 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVA-EFGAPSNLLQ 1508 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999998764 5799999999999985 8999999999997 4689888754
No 326
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-41 Score=300.96 Aligned_cols=207 Identities=22% Similarity=0.293 Sum_probs=175.5
Q ss_pred CCCCcEEEEeeEEEcCCC----------CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--
Q 024529 51 PGPPIISFSDASFGYPGG----------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-- 118 (266)
Q Consensus 51 ~~~~~l~~~~l~~~y~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-- 118 (266)
..++.++.+++.+.|+-. ..+++++||++.+|+.+||+|.||||||||-++|.++++++ |+|.+.|.
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i 350 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDI 350 (534)
T ss_pred CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccc
Confidence 356789999999999621 24789999999999999999999999999999999999876 99998774
Q ss_pred ------------eeEEEEeccccCCCCCCCcHHHHHHHh---C-CC----CcHHHHHHHHHhcCCCcccccCCCCCCChH
Q 024529 119 ------------VRIAVFSQHHVDGLDLSSNPLLYMMRC---F-PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGG 178 (266)
Q Consensus 119 ------------~~i~~~~q~~~~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 178 (266)
.++-.+||+|+..++...++-.-+... . +. ...+++.++|+.+|++....+++++++|||
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG 430 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG 430 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence 358899999988777776654433221 1 11 235678899999999988889999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCC
Q 024529 179 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG 254 (266)
Q Consensus 179 qkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g 254 (266)
||||++||||++.+|++++||||||+||..-..++++.|++ ++-+-++||||+..+..+||+|+||++|+|+ ..|
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV-E~G 509 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV-EQG 509 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe-eeC
Confidence 99999999999999999999999999999988888887764 3568999999999999999999999999997 467
Q ss_pred ChhHH
Q 024529 255 TFHDY 259 (266)
Q Consensus 255 ~~~~~ 259 (266)
+.+++
T Consensus 510 ~~~~i 514 (534)
T COG4172 510 PTEAV 514 (534)
T ss_pred CHHHH
Confidence 66554
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.8e-41 Score=286.50 Aligned_cols=186 Identities=15% Similarity=0.184 Sum_probs=142.9
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE-EcCeeeEEEEeccccCCCCCCCcHHHHHHH--hCC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-RSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--CFP 147 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~ 147 (266)
+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. +++.. + .+.+.+ .+....+..+++.. ...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-~-~~~~~~--~l~~~ltv~enl~~~~~~~ 77 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-L-PLGANS--FILPGLTGEENARMMASLY 77 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-e-cccccc--ccCCcCcHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999996 55432 1 111221 11122233333321 111
Q ss_pred CCcHHHH-HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-c-CCEE
Q 024529 148 GVPEQKL-RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL-F-QGGI 224 (266)
Q Consensus 148 ~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~-~~ti 224 (266)
.....++ ..+.+.+++.. ..++++..||||||||++|||||+.+|+++||||||+++|+.+...+.+.+.+ . +.++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~i 156 (213)
T PRK15177 78 GLDGDEFSHFCYQLTQLEQ-CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGL 156 (213)
T ss_pred CCCHHHHHHHHHHHhChhH-HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcE
Confidence 2223332 33345567764 45788999999999999999999999999999999999999999888887643 2 4589
Q ss_pred EEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 225 LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 225 iivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
|++||+++++..+||++++|++|+++ +.++.++.++.
T Consensus 157 i~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~~ 193 (213)
T PRK15177 157 IVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQATAL 193 (213)
T ss_pred EEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHHHHHH
Confidence 99999999999999999999999997 77888776544
No 328
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8.3e-41 Score=304.63 Aligned_cols=206 Identities=24% Similarity=0.408 Sum_probs=173.2
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|.++++++.-|+. +++++++||++.+||.+||+||||||||||.|+|.|..+|.+|.|+.++- ..|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 469999999987664 57999999999999999999999999999999999999999999998873 369
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC----------CCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------~~~LSgGqkqRv~lAral~~ 191 (266)
||+||+.. -+..+..+++.+..++.+.+.+.++....+.++-....| ...||||||||++|||||..
T Consensus 413 GYLPQdVe---LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 413 GYLPQDVE---LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred CcCcccce---ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 99999853 234567777776655667777777777666654332222 45799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
+|.+++||||-++||.+....+.+.+. ..++|+|+|||.+..+. .+|+|++|++|++. ..|+.++..+...
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~-~FG~r~eVLa~~~ 563 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIA-AFGPREEVLAKVL 563 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHH-hcCCHHHHHHHhc
Confidence 999999999999999999999888765 45789999999999887 69999999999996 5699988876553
No 329
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.5e-40 Score=344.25 Aligned_cols=201 Identities=19% Similarity=0.312 Sum_probs=171.2
Q ss_pred cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
.|+++||+|+|+++ +.+|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.++|. ..++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 59999999999654 45999999999999999999999999999999999999999999999874 3699
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~ 192 (266)
++||++.. +..+..+++.. ....+++++.++++.+++.+.... .....||||||||++|||||+++
T Consensus 1388 iVpQdp~L---F~gTIreNIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1388 MIPQDPVL---FDGTVRQNVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred EECCCCcc---ccccHHHHhCc-ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 99999752 34466666532 234567889999999988653322 12467999999999999999995
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 -PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 -p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|+|||||||||+||+++...+.+.|.+. +.|||+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Vv-E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVA-EMGSPRELVM 1533 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 8999999999999999999999988764 5799999999999974 9999999999997 4688888754
No 330
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.3e-40 Score=323.87 Aligned_cols=205 Identities=23% Similarity=0.327 Sum_probs=164.3
Q ss_pred EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC--ceEEEEcCe-------eeEEEEecc
Q 024529 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--SGTVFRSAK-------VRIAVFSQH 127 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~~~-------~~i~~~~q~ 127 (266)
.++|+++.|+ ++.+|+|+|+++++||++||+|||||||||||++|+|..+|+ +|+|.+++. ..++|++|+
T Consensus 70 ~~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 3566777784 457999999999999999999999999999999999999885 899998875 258999998
Q ss_pred ccCCCCCCCcHHHHHH--HhC--C-CCc----HHHHHHHHHhcCCCccc----ccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 128 HVDGLDLSSNPLLYMM--RCF--P-GVP----EQKLRAHLGSFGVTGNL----ALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 128 ~~~~~~~~~~~~~~~~--~~~--~-~~~----~~~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
.... ...++.+.+. ... + ... .+++.++++.+|+.+.. .++.++.||||||||++||++|+.+|+
T Consensus 149 ~~l~--~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~ 226 (659)
T PLN03211 149 DILY--PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 226 (659)
T ss_pred cccC--CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence 6422 2223333332 111 1 111 23467889999996432 234578899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHH-HHHhhcCEEEEEeCCeEEecCCChhHHHHHHhc
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 265 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 265 (266)
||+|||||+|||+.++..+.+.|++ .+.|||++||+++ .+..+||++++|++|+++ +.|+.++..+.+.+
T Consensus 227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv-~~G~~~~~~~~f~~ 300 (659)
T PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAMAYFES 300 (659)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE-EECCHHHHHHHHHH
Confidence 9999999999999999998888765 3679999999998 578899999999999996 78999888776653
No 331
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-41 Score=265.57 Aligned_cols=200 Identities=19% Similarity=0.277 Sum_probs=164.2
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------- 118 (266)
.|.++++++.| |...+|-||+|+.+.||.+.++||+|+|||||+|.|.-+.-|.+|+..+.+.
T Consensus 2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 37899999999 4567899999999999999999999999999999999999999999976542
Q ss_pred -eeEEEEeccccCCCCCCCcHHHHHHHh----C---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529 119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC----F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~ 190 (266)
..+|+++|... +....++..++... . ......++.++|+++.+.+ ..++.+-.|||||+|||+|||||+
T Consensus 81 r~~vgmvfqqy~--lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 81 RRNVGMVFQQYN--LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHhhhhhhhhhc--cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHHHHh
Confidence 35899998753 22233444444321 1 1123456788999999975 577888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
.+|++||+||||++|||+-..++.+.+++ .+.|-++|||..+.+.+++.+++.|++|+|+ ..|+.+.|
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv-e~g~a~~f 228 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE-eecchhhc
Confidence 99999999999999999977776666655 4668899999999999999999999999997 46776554
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-40 Score=290.05 Aligned_cols=185 Identities=23% Similarity=0.267 Sum_probs=144.9
Q ss_pred EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE-----------EcCe---------
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK--------- 118 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~--------- 118 (266)
.+++++|++...+++|+|+ +.+|++++|+|||||||||||++|+|+++|++|+|. +++.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999644468999995 999999999999999999999999999999999995 3332
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
..++|++|..... . ......+..... ......+.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus 83 ~~~~~~i~~~~~~~~~~-~--~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEGDVKVIVKPQYVDLI-P--KAVKGKVGELLKKKDERGKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhcccceeeecchhccC-c--hHHHHHHHHHhchhHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1256666653211 1 111111111111 123456788999999975 456788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
+++||||||++||+.++..+.+.+++ .+.|||++|||++++..+||++++|+ |++
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~ 216 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEP 216 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCC
Confidence 99999999999999998877777654 35799999999999999999999995 444
No 333
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-41 Score=285.26 Aligned_cols=184 Identities=24% Similarity=0.318 Sum_probs=152.7
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeEEEEeccccCCCCCCCc
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDLSSN 137 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~~~~ 137 (266)
=+++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|..+++ .++||+||+...+.. .+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH--~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH--YT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccc--eE
Confidence 3789999886899999999999999999999999999999988774 369999998632222 22
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529 138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217 (266)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l 217 (266)
+.-++.............++.+.+|+. ++.++.+.+|||||||||+|+|||+..|++||||||.+.||...+.+++-++
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl 171 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence 222222111123456778889999997 5778899999999999999999999999999999999999999999988877
Q ss_pred hhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 218 VLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 218 ~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.+. +..|++|||.++++.++||++++|++|++. ..|+.++..
T Consensus 172 ERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~-A~g~~e~v~ 217 (352)
T COG4148 172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVK-ASGPLEEVW 217 (352)
T ss_pred HHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEE-ecCcHHHHh
Confidence 653 457999999999999999999999999997 568877764
No 334
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.8e-41 Score=285.07 Aligned_cols=193 Identities=25% Similarity=0.374 Sum_probs=152.2
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEEe-ccccCCCCCCCcH
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVFS-QHHVDGLDLSSNP 138 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~~-q~~~~~~~~~~~~ 138 (266)
.+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.+.|.. ++++++ |.....++.....
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 47899999999999999999999999999999999999999999987641 233332 1111111111110
Q ss_pred HHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 024529 139 LLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 214 (266)
Q Consensus 139 ~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~ 214 (266)
-..+......+ ..++...+-+.+++.+. .+.|++.||-|||.|+.||.+|+++|+||+|||||=|||...+..+.
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~-lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGF-LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhh-hhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 00111111122 24556666777888754 56899999999999999999999999999999999999999999999
Q ss_pred HHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 215 QGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 215 ~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
+.++++ +.||+++||+++.+..+||||++|+.|+++ |+|+..++.++..
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~f~ 249 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQFG 249 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHHhC
Confidence 988765 579999999999999999999999999997 8999999877653
No 335
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.3e-40 Score=273.00 Aligned_cols=148 Identities=24% Similarity=0.331 Sum_probs=124.9
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEeccccCCCCCCCcHHHHH
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYM 142 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q~~~~~~~~~~~~~~~~ 142 (266)
+.+|+|+||+|++|++++|+||||||||||||+|. +++|++.+.+.. .++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 46899999999999999999999999999999996 368988765431 1112111
Q ss_pred HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHhh-
Q 024529 143 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGLVL- 219 (266)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~- 219 (266)
.++++.+++.....++++.+||||||||++|||||+.+ |++|||||||++||+.+...+.+.+++
T Consensus 68 ------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 68 ------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred ------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 45788899865335678899999999999999999999 999999999999999999988887765
Q ss_pred --cCCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 220 --FQGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 220 --~~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
.+.|||+|||+++++. .||++++|++|+.
T Consensus 136 ~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 136 IDLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred HhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 4679999999999985 7999999988665
No 336
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1e-39 Score=339.48 Aligned_cols=189 Identities=25% Similarity=0.365 Sum_probs=155.4
Q ss_pred cEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc-Ce-----------ee
Q 024529 55 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK-----------VR 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-~~-----------~~ 120 (266)
.|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++ +. ..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 59999999999743 369999999999999999999999999999999999999999999984 32 25
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhC------------------------------------------------------
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCF------------------------------------------------------ 146 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 146 (266)
++|++|++... ..+..+++....
T Consensus 462 Ig~V~Q~~~LF---~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 IGVVSQDPLLF---SNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred ccEecccccch---hccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 89999986421 224444443210
Q ss_pred ---CCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529 147 ---PGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213 (266)
Q Consensus 147 ---~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l 213 (266)
....++++.++++.+++.+.. ....+..||||||||++|||||+.+|+||||||||++||+.+...+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 012346678888888775432 1345689999999999999999999999999999999999999999
Q ss_pred HHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529 214 IQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEG 247 (266)
Q Consensus 214 ~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G 247 (266)
.+.|.+. +.|+|+|||+++.+. .||+|++|++|
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 8888764 469999999999985 79999999986
No 337
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.9e-40 Score=326.77 Aligned_cols=202 Identities=26% Similarity=0.384 Sum_probs=174.0
Q ss_pred cEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 55 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 55 ~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
-|+++||+|.||.. .++|+|+||+|++|+.+||+|||||||||.+.+|-.+|+|++|.|.+++. ..+
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 59999999999853 46899999999999999999999999999999999999999999999874 369
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~ 191 (266)
+.+.|+|.. +..+..+++.......+++++.++++..+.++.... .+..+||||||||+|||||+++
T Consensus 1067 ~lVsQEP~L---F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVL---FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred ceeccCchh---hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 999999853 344666666554334688889888887766543322 2356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||+||||||.||+||.++.+.+.+.|.+. +.|.|+|+|++..+.+ ||.|+|+++|+++ ..|+.+++..
T Consensus 1144 nPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~Vv-E~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVV-EQGTHDELLA 1213 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEE-ecccHHHHHh
Confidence 99999999999999999999999999764 6799999999999985 9999999999997 5899988765
No 338
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=315.47 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=164.3
Q ss_pred CcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529 54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------ 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------ 118 (266)
++|+++|+++.|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999532 46899999999999999999999999999999999999999999998763
Q ss_pred ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
..++|++|++.. ....+..+++.. .... ...+++.++++.+++.+ ..++++.+|||||+||++|||||
T Consensus 83 ~~~~~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 83 LRREHFGFIFQRYHL--LSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-RVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHhccEEEEeCCccc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhcCCcccCCHHHHHHHHHHHHH
Confidence 248999998632 222233333321 1111 12345778899999974 56788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
+.+|++|||||||++||+.+++.+.+.+++. +.|+|++||+.+.+. .||++++|++|+++ ..|+.++.
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~ 230 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIV-RNPPAQEK 230 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEE-eecCcccc
Confidence 9999999999999999999999988877653 569999999999886 69999999999996 45665543
No 339
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.7e-39 Score=335.48 Aligned_cols=201 Identities=19% Similarity=0.305 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++||+++|++ .+.+|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.++|. .++
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 46999999999964 3679999999999999999999999999999999999997 7999999874 369
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~ 191 (266)
+|+||++.. +..+...++.. ....+++++.++++.+++.+..... ....||||||||++|||||++
T Consensus 1295 s~IpQdp~L---F~GTIR~NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1295 GVIPQKVFI---FSGTFRKNLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred EEEeCCCcc---CccCHHHHhCc-ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 999999753 33456665522 2245678899999999886433222 234799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|+||||||||++||..+...+.+.|.+. ++|||+|||+++.+.. ||+|++|++|++++ .|+++++.+
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE-~g~p~~Ll~ 1440 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQ-YDSIQKLLN 1440 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-eCCHHHHHc
Confidence 99999999999999999999999998764 5799999999999885 99999999999974 688887753
No 340
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=261.09 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=163.9
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 118 (266)
.|.+++.++|+.|++ ..-.+||||++.|||+.+|+|+|||||||||+||++-+.|++|+|.+..+
T Consensus 4 ~PLL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 468999999999954 45789999999999999999999999999999999999999999976432
Q ss_pred ------eeEEEEeccccCCCCCCC----cHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529 119 ------VRIAVFSQHHVDGLDLSS----NPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l 185 (266)
...|++.|+|.+++.+.. |.-+.++. ...+.-...+.++|+.+.++....+-.+.++||||+||+.|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 248999999876654332 22122211 11133456678899999987665566679999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATP 251 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 251 (266)
||-|+..|+++++||||.|||..-...+++.++ +.+.++++||||+..+.-.++|.++|++|++++
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 999999999999999999999998888888765 456799999999999999999999999999864
No 341
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-39 Score=263.14 Aligned_cols=153 Identities=35% Similarity=0.571 Sum_probs=126.0
Q ss_pred EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCc
Q 024529 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN 137 (266)
Q Consensus 58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~ 137 (266)
++++++.|++ ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|++++... ...
T Consensus 2 ~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~--------------~~~ 66 (157)
T cd00267 2 IENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI--------------AKL 66 (157)
T ss_pred eEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc--------------ccC
Confidence 6899999954 4699999999999999999999999999999999999999999998765310 000
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529 138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217 (266)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l 217 (266)
. ..+ ....+++. .+|||||+||++|||+++.+|++++|||||++||+.++..+.+.+
T Consensus 67 ~------------~~~---~~~~i~~~--------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l 123 (157)
T cd00267 67 P------------LEE---LRRRIGYV--------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123 (157)
T ss_pred C------------HHH---HHhceEEE--------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 0 000 00011110 019999999999999999999999999999999999999998888
Q ss_pred hhc---CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 218 VLF---QGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 218 ~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
.+. +.|+|++||+++++..+||++++|++|+
T Consensus 124 ~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 124 RELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 654 3599999999999999999999999875
No 342
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.1e-39 Score=292.04 Aligned_cols=171 Identities=27% Similarity=0.353 Sum_probs=140.4
Q ss_pred EECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----H
Q 024529 87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----E 151 (266)
Q Consensus 87 l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~ 151 (266)
|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++.. ....+..+++... ..... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYAL--FPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccc--cCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999999999998774 258999998632 2233444443211 11111 3
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEE
Q 024529 152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMV 227 (266)
Q Consensus 152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiiv 227 (266)
+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+. +.|||+|
T Consensus 79 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 79 PRVLEALRLVQLEE-FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHcCCcc-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45778999999974 567889999999999999999999999999999999999999999988877643 5799999
Q ss_pred ecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 228 SHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 228 tHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||++++..+||++++|++|++. ..|+++++.+
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~-~~g~~~~~~~ 190 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIA-QIGTPEEIYE 190 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999996 5788877643
No 343
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-40 Score=293.48 Aligned_cols=219 Identities=44% Similarity=0.854 Sum_probs=197.4
Q ss_pred ccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEE
Q 024529 43 EFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA 122 (266)
Q Consensus 43 ~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~ 122 (266)
.||.+.. -.+|+|-+.+|+|.|++.+++|.+++|-|.--..++|+||||.||||||++|.|-+.|..|+.+-+.+.+||
T Consensus 575 ~FPep~~-L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG 653 (807)
T KOG0066|consen 575 QFPEPTK-LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIG 653 (807)
T ss_pred ecCCCCC-CCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeee
Confidence 3444332 357899999999999988899999999999999999999999999999999999999999999988899999
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
++.|+....+....++..++.+.+ ..+.+.++..|..||+..+...-.+..|||||+-||++|-.-+..|+||||||||
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 999987667777788888887766 6788999999999999876666678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529 203 NHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 263 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 263 (266)
|+||.+++.++.+.+.++.+.|||||||..++.......||+++..|-...|.+++|.+..
T Consensus 733 NNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEV 793 (807)
T KOG0066|consen 733 NNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEV 793 (807)
T ss_pred CCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHH
Confidence 9999999999999999999999999999999988777899999888877889999997653
No 344
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=265.38 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=168.6
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------ee
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~ 120 (266)
++|+++|++++| ++..+++++||++.+||.-+|+||||+||||+|.+|+|..+|+.|++++.+. ..
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 579999999999 5667999999999999999999999999999999999999999999998873 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 186 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA 186 (266)
||--||.|.-+. ..++++++. .........++.++|+..|+.+ ..+.....||.||||++.|+
T Consensus 83 IGRKFQ~PtVfe--~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 83 IGRKFQKPTVFE--NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-ERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred cCccccCCeehh--hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-hhhhhhhhhccchhhhhhhh
Confidence 777788763222 222333321 1111223568999999999975 56788899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
..++++|++||||||++|+-.......-+.|+.. +.+|++|.||+.|+..++++|-+|+.|.+. .+|+.+++.
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL-~EGsld~v~ 234 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL-AEGSLDEVQ 234 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee-ecccHHHhh
Confidence 9999999999999999999887777777766654 458999999999999999999999999996 789988874
No 345
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.9e-38 Score=331.82 Aligned_cols=201 Identities=21% Similarity=0.358 Sum_probs=165.1
Q ss_pred CcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 54 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
..++++|++|+|++ .+++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|.+.. -+..++|++|++..
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~L- 690 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSWI- 690 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCcccc-
Confidence 35999999999964 256899999999999999999999999999999999999999987642 23469999999752
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
+..+..+++.... ..+++++.++++.+++.++... .....||||||||++||||++++|+|||||||
T Consensus 691 --f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 691 --FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred --ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3456666665332 3567788888888887543322 23457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-Hhh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 202 SNHLDLDAVEALIQG-LVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 202 t~~LD~~~~~~l~~~-l~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||+||+.+.+.+++. +.. .+.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 768 tSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~-~~Gt~~eL~~ 828 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK-EEGTFAELSK 828 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEE-EecCHHHHHh
Confidence 999999998888665 443 3579999999999876 59999999999997 6799888753
No 346
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.1e-38 Score=329.81 Aligned_cols=198 Identities=22% Similarity=0.335 Sum_probs=162.1
Q ss_pred cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.++++|+++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++..
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l--- 710 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAWI--- 710 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCccc---
Confidence 69999999999643 5689999999999999999999999999999999999999999999886 59999998742
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
...+..+++.... ..++++..++++.+++.++ ....++.+||||||||++||||++.+|+++||||||+
T Consensus 711 ~~~Ti~eNI~~g~-~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 711 QNDSLRENILFGK-ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred cCCcHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 2345666654321 2334444555544443211 1234578999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhh-----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 204 HLDLDAVEALIQGLVL-----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 204 ~LD~~~~~~l~~~l~~-----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+||+.+.+.+++.+.. .+.|+|+|||+++.+.. ||+|++|++|++. ..|+++++.
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~-~~g~~~~l~ 849 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKIS-EMGSYQELL 849 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEE-eeCCHHHHH
Confidence 9999999999888742 24699999999999875 9999999999996 678887764
No 347
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-38 Score=330.27 Aligned_cols=200 Identities=22% Similarity=0.372 Sum_probs=166.2
Q ss_pred CcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc-eEEEEcCeeeEEEEeccccC
Q 024529 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVD 130 (266)
Q Consensus 54 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~~i~~~~q~~~~ 130 (266)
..++++|++|+|++ .+++|+|+||+|++|++++|+||+|||||||+++|+|.++|++ |+|.+. ..++|++|++..
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~--~~Iayv~Q~p~L 690 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR--GTVAYVPQVSWI 690 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc--CeEEEEcCcccc
Confidence 35999999999964 2568999999999999999999999999999999999999999 999864 469999999752
Q ss_pred CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 131 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
+..+..+++.... ..+++++.++++.+++.++... ....+||||||||++||||++++|+||||||
T Consensus 691 ---fngTIreNI~fg~-~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 691 ---FNATVRDNILFGS-PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred ---CCCCHHHHHhCCC-cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3456666665332 3467788888888887544322 2345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-Hhh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 201 PSNHLDLDAVEALIQG-LVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~-l~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||+||+.+.+.+++. +.. .+.|+|+|||+++.+. .||+|++|++|++. ..|+++++.+
T Consensus 767 ptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~-e~Gt~~eL~~ 828 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIK-EEGTYEELSN 828 (1622)
T ss_pred CccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEE-EeCCHHHHHh
Confidence 9999999988877653 443 3579999999999876 59999999999996 6799888753
No 348
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-39 Score=292.90 Aligned_cols=242 Identities=25% Similarity=0.387 Sum_probs=183.6
Q ss_pred hhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCC-CCCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECC
Q 024529 12 AKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDD-RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGP 90 (266)
Q Consensus 12 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~ 90 (266)
++-++..|...--+++|-++.+..++ -.+.|..++ .....-++++||+|.|..++++|+||||++.+|+.+||+||
T Consensus 496 GT~YR~iQ~nfiDmEnmfdllkee~e---Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~ 572 (790)
T KOG0056|consen 496 GTYYRSIQKNFIDMENMFDLLKEEPE---VVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGP 572 (790)
T ss_pred HHHHHHHHHhhhhHHHHHHHhhcCch---hhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECC
Confidence 34455566655556665444332221 111121111 11234599999999998888999999999999999999999
Q ss_pred CCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529 91 NGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159 (266)
Q Consensus 91 nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (266)
||+||||+||+|..+++..+|.|.++++ ..||.+||+... +..+.+.++....+....+++.++.+
T Consensus 573 SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL---FNdTI~yNIryak~~AsneevyaAAk 649 (790)
T KOG0056|consen 573 SGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL---FNDTILYNIRYAKPSASNEEVYAAAK 649 (790)
T ss_pred CCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee---ecceeeeheeecCCCCChHHHHHHHH
Confidence 9999999999999999999999999985 369999998642 23344444433334556667777766
Q ss_pred hcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEE
Q 024529 160 SFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMV 227 (266)
Q Consensus 160 ~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiiv 227 (266)
..++++.... .+.-.|||||||||+|||+++..|.+++|||.||+||..+.+++...|.+. +.|-|+|
T Consensus 650 AA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVv 729 (790)
T KOG0056|consen 650 AAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVV 729 (790)
T ss_pred HhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEE
Confidence 6665543221 123479999999999999999999999999999999999999999988875 5689999
Q ss_pred ecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 228 SHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 228 tHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
.|++..+-+ ||.|+++++|+|+ ..|+.+++..
T Consensus 730 AHRLSTivn-AD~ILvi~~G~Iv-ErG~HeeLl~ 761 (790)
T KOG0056|consen 730 AHRLSTIVN-ADLILVISNGRIV-ERGRHEELLK 761 (790)
T ss_pred eeeehheec-ccEEEEEeCCeEe-ecCcHHHHHh
Confidence 999999985 9999999999997 5788777644
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.8e-39 Score=308.88 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=148.5
Q ss_pred EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE-----------EcCe---------
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK--------- 118 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~--------- 118 (266)
++++++|++...+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|. +.|.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 348999964446899999 9999999999999999999999999999999999996 4432
Q ss_pred ----eeEEEEeccccCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 119 ----VRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
..+++.+|....... +..+..+++.. ....+++.++++.+++.. ..++++.+|||||+|||+||+||+.+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKK---VDERGKLDEVVERLGLEN-ILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHh---hhHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 235555664321111 11233333321 112456788999999964 567899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEG 247 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G 247 (266)
++|||||||++||+.++.++.+.++++ +.|||+||||++++..+||++++|.++
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999988887765 789999999999999999999999763
No 350
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-38 Score=261.09 Aligned_cols=207 Identities=21% Similarity=0.358 Sum_probs=167.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCe------------e
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAK------------V 119 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~------------~ 119 (266)
.+|+++||+.+..+.+.+|++|||+|++||+.+|+||||||||||.++|+|. |.+++|+|.+++. .
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 4799999999995434899999999999999999999999999999999997 5789999999875 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhCC----C-----CcHHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFP----G-----VPEQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAKIT 189 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~lAral 189 (266)
.+...+|.|....-+ +...++..... . ....++.+.++.+++++...++.+. .+|||||+|..|+.++
T Consensus 82 GifLafQ~P~ei~GV--~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~ 159 (251)
T COG0396 82 GIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL 159 (251)
T ss_pred CCEEeecCCccCCCe--eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence 467778887533222 33333332111 1 2356778899999999877777764 6999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
+.+|++.|||||-||||..+.+.+.+.+. +.+.++++|||..+.+..+ .|++.+|-+|+|+ ..|++ ++.+.++
T Consensus 160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv-~sG~~-el~~~le 236 (251)
T COG0396 160 LLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV-KSGDP-ELAEELE 236 (251)
T ss_pred hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE-ecCCH-HHHHHHH
Confidence 99999999999999999999887766554 4567899999999988754 3999999999997 67887 6665544
No 351
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=283.05 Aligned_cols=206 Identities=24% Similarity=0.360 Sum_probs=168.3
Q ss_pred CCcEEEEeeEEEcC---CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe------
Q 024529 53 PPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------ 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~------ 118 (266)
.++|+++|+++.|. +...++++|||+|.+||.+||+|+||||||-..+.|+|+++. -+|+|.++|.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46899999999994 235689999999999999999999999999999999999864 3689988774
Q ss_pred ---------eeEEEEeccccCCCCCCCcHHHH---HHHhCCC----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHHH
Q 024529 119 ---------VRIAVFSQHHVDGLDLSSNPLLY---MMRCFPG----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQK 180 (266)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqk 180 (266)
.+|+++||+|...++...+.-.. ......+ ....++.++|+.+|+.+. ..+.++++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 36999999987655544332111 1122222 345678889999999753 24567899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 256 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 256 (266)
|||.||.||+.+|++||.||||.+||..-..+|++.|++ .+.++++||||+..+.++||||+||.+|+++ ..|+.
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv-E~~~t 242 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV-ETGTT 242 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe-ecCcH
Confidence 999999999999999999999999999988888887764 4679999999999999999999999999997 45655
Q ss_pred hHH
Q 024529 257 HDY 259 (266)
Q Consensus 257 ~~~ 259 (266)
+++
T Consensus 243 ~~l 245 (534)
T COG4172 243 ETL 245 (534)
T ss_pred HHH
Confidence 543
No 352
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-38 Score=266.49 Aligned_cols=191 Identities=28% Similarity=0.355 Sum_probs=150.2
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHH--HHHhC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY--MMRCF 146 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~--~~~~~ 146 (266)
..+|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|...++.. .+..-. .++....+..++ +....
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~--~li~lg-~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA--PLIELG-AGFDPELTGRENIYLRGLI 116 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe--hhhhcc-cCCCcccchHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999988743 111110 112222222222 22222
Q ss_pred CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--
Q 024529 147 PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-- 220 (266)
Q Consensus 147 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-- 220 (266)
.+. .++.+.++.+...|. +..++|++++|-||+-|+++|.|...+|+|||+||-.+..|+.-.+.-.+.+.++
T Consensus 117 ~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~ 195 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE 195 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH
Confidence 222 234556667767775 4578999999999999999999999999999999999999998777665555443
Q ss_pred -CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 221 -QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 221 -~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
+.|||+||||++.+.++||++++|++|++. +.|++++..+..+
T Consensus 196 ~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~-~~G~~~~vi~~Y~ 239 (249)
T COG1134 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR-MEGSPEEVIPAYE 239 (249)
T ss_pred cCCEEEEEECCHHHHHHhcCeeEEEeCCEEE-EcCCHHHHHHHHH
Confidence 579999999999999999999999999997 7899988766544
No 353
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.3e-37 Score=301.91 Aligned_cols=193 Identities=22% Similarity=0.292 Sum_probs=157.1
Q ss_pred CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCee--------eEEEEeccccCCCCCCC
Q 024529 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV--------RIAVFSQHHVDGLDLSS 136 (266)
Q Consensus 68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~--------~i~~~~q~~~~~~~~~~ 136 (266)
++.+|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.+++.. .++|++|++.. ....
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~--~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF--IPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccccc--CccC
Confidence 456999999999999999999999999999999999998885 7999998853 47999998642 2223
Q ss_pred cHHHHHH--HhC--C-CC----cHHHHHHHHHhcCCCcccccCCCC------CCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 137 NPLLYMM--RCF--P-GV----PEQKLRAHLGSFGVTGNLALQPMY------TLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 137 ~~~~~~~--~~~--~-~~----~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
++.+++. ... + .. ..+++.++++.+|+.+ ..+.+++ .||||||||++||++|+.+|++|+||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 4443332 111 1 11 1345788999999975 3456655 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 202 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
|+|||+.+...+++.+++. +.|||+++|++. .+...||++++|++|+++ +.|++++..+...
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v-~~G~~~~~~~~f~ 259 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQAVPFFS 259 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE-EECCHHHHHHHHH
Confidence 9999999999988887654 579999999985 677899999999999996 7899988766554
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-37 Score=321.89 Aligned_cols=200 Identities=17% Similarity=0.281 Sum_probs=161.5
Q ss_pred CCcEEEEeeEEEcC---CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC---CCceEEEEcCe-------e
Q 024529 53 PPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-------V 119 (266)
Q Consensus 53 ~~~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~-------~ 119 (266)
..+++++||++.|+ +.+.+|+|||+++++|++++|+|||||||||||++|+|+.+ |++|+|.++|. .
T Consensus 757 ~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred CceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 34689999999994 23579999999999999999999999999999999999987 78999999874 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHH--h--CC-CCc----HHHHHHHHHhcCCCcccccCCCC----CCChHHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMR--C--FP-GVP----EQKLRAHLGSFGVTGNLALQPMY----TLSGGQKSRVAFA 186 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~--~--~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkqRv~lA 186 (266)
.++|++|+... ....++.+.+.. . .+ ... .+++.++++.+++.+ ..++.++ .||||||||++||
T Consensus 837 ~i~yv~Q~~~~--~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~d~~v~~~~~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 837 SIGYVQQQDLH--LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-YADAVVGVPGEGLNVEQRKRLTIG 913 (1394)
T ss_pred ceeeecccccC--CCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-hCCCeeCCCCCCCCHHHhhHHHHH
Confidence 58999998532 223344443321 1 11 111 245788999999974 4566665 7999999999999
Q ss_pred HHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHH-HHhhcCEEEEEeCC-eEEecCCCh
Q 024529 187 KITFKKPH-IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHL-ISGSVEELWVVSEG-KATPFHGTF 256 (266)
Q Consensus 187 ral~~~p~-lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~-~~~~~d~i~~l~~G-~i~~~~g~~ 256 (266)
++|+.+|+ ||+|||||+|||+.+...+++.|++. +.|||++||+++. +...||++++|++| +++ +.|+.
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~ 988 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL 988 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence 99999997 99999999999999999988887654 5799999999986 44679999999997 886 67775
No 355
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-38 Score=290.62 Aligned_cols=202 Identities=30% Similarity=0.454 Sum_probs=158.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--eeEE-EEeccccC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--VRIA-VFSQHHVD 130 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~-~~~q~~~~ 130 (266)
.-|.+.+++..|+ ++.+|++-++++..|..+||+|+||+|||||||+|+- |.|..... ...+ +++.. ..
T Consensus 79 ~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~-~~ 150 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL-QS 150 (582)
T ss_pred cceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH-hh
Confidence 3589999999994 6789999999999999999999999999999999986 33321110 0001 11100 01
Q ss_pred CCCCCCcHHHHHHHh---CCCCcHHHHHH-HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529 131 GLDLSSNPLLYMMRC---FPGVPEQKLRA-HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206 (266)
Q Consensus 131 ~~~~~~~~~~~~~~~---~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD 206 (266)
.+........++... ......+++.. +|..+|+++++..+|.++||||.|.|++|||||..+|+|||||||||+||
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 111111112222111 11113344555 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529 207 LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 263 (266)
Q Consensus 207 ~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 263 (266)
..++.|+.++|..++.|+|+||||..|+..+|..|+.+++-++-.|.|++++|.+..
T Consensus 231 v~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 231 VVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred hHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 999999999999999999999999999999999999999999988999999997654
No 356
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9.5e-37 Score=261.67 Aligned_cols=179 Identities=22% Similarity=0.256 Sum_probs=125.8
Q ss_pred CCcceeeceEEEeCCcEEEEECCCCchHHHHH-HHHhC--------------------CCCCCceEEEEcCeeeEEEEec
Q 024529 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAG--------------------ELQPSSGTVFRSAKVRIAVFSQ 126 (266)
Q Consensus 68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G--------------------l~~p~~G~i~~~~~~~i~~~~q 126 (266)
+..+|+++||+|++||+++|+||||||||||+ .+|.. +..|..+.+. + ....+..+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE--G-LSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccccc--C-CCceEEec
Confidence 45689999999999999999999999999996 33321 1112211110 0 11233333
Q ss_pred cccCCCCCCCcHH------HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEE
Q 024529 127 HHVDGLDLSSNPL------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILL 198 (266)
Q Consensus 127 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllL 198 (266)
++........+.. ..+...+.........+.++.+++.+...++++.+|||||+||++|||||+.+| ++|||
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3322222221211 111111111112233578999999753467889999999999999999999998 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEE------eCCeEE
Q 024529 199 DEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVV------SEGKAT 250 (266)
Q Consensus 199 DEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l------~~G~i~ 250 (266)
||||++||+.++..+.+.+.+ .+.|||+||||++++. +||++++| ++|+++
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv 223 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIV 223 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEE
Confidence 999999999999988887754 3679999999999985 89999999 889886
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.8e-37 Score=318.71 Aligned_cols=184 Identities=25% Similarity=0.436 Sum_probs=147.2
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 149 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 149 (266)
++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|++.. +..+..+++.... ..
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~l---~~~Ti~eNI~~g~-~~ 513 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSWI---MPGTIKDNIIFGL-SY 513 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCcc---CCccHHHHHHhcc-cc
Confidence 589999999999999999999999999999999999999999999887 59999998753 2235666554221 12
Q ss_pred cHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hh
Q 024529 150 PEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG-LV 218 (266)
Q Consensus 150 ~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~ 218 (266)
+..+..++++.+++.++ ....++.+||||||||++||||++.+|+++||||||++||+.+...+++. +.
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23334444444333221 12345679999999999999999999999999999999999999998874 44
Q ss_pred hc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 219 LF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 219 ~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
.. +.|+|+|||+++.+. .||++++|++|+++ ..|+++++.+
T Consensus 594 ~~~~~~tvilvtH~~~~~~-~ad~ii~l~~g~i~-~~g~~~~l~~ 636 (1490)
T TIGR01271 594 KLMSNKTRILVTSKLEHLK-KADKILLLHEGVCY-FYGTFSELQA 636 (1490)
T ss_pred HHhcCCeEEEEeCChHHHH-hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 32 579999999999987 49999999999996 6788887753
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.8e-37 Score=249.41 Aligned_cols=205 Identities=25% Similarity=0.343 Sum_probs=166.5
Q ss_pred CcEEEEeeEEEcCCC--------CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------
Q 024529 54 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------- 118 (266)
+.++++|+++.|... ..+++.|||++++|+.+||+|.||||||||.|+|+|.++|++|+|.++++
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 468899999888421 24789999999999999999999999999999999999999999998874
Q ss_pred ----eeEEEEeccccCCCCCCCcH---HHHHHHhC----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNP---LLYMMRCF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
..|-++||++...++...+. ++.-.+.. +....+++.+.|..+|+-++..+.++..||-||||||+|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 25778899875444332221 11111111 11234567888999999888888899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||+.+|+|+|.||..++||...+.++++.+.+ .+.+-|.|+.++..+..++|.|+||++|++++ .|...++
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE-~G~t~~v 237 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE-RGSTADV 237 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee-cCChhhh
Confidence 99999999999999999999998888876543 46689999999999999999999999999985 4665554
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.1e-37 Score=252.67 Aligned_cols=195 Identities=27% Similarity=0.362 Sum_probs=154.6
Q ss_pred cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------
Q 024529 55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------- 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------- 119 (266)
|+.+.|+++.|..+ +++|+++|++|+.|+++.|+|.||||||||+++|+|-+.|++|+|.+++..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 45677777776432 468999999999999999999999999999999999999999999988742
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhC-----CCC----c---HHHHHHHHHhc--CCCcccccCCCCCCChHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCF-----PGV----P---EQKLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~----~---~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqRv~l 185 (266)
.++-++|+|..+.....+..+++..+. .+. . ....++.++.+ |+. ...+.++.-|||||||-++|
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhccchHHHHHHH
Confidence 366789998655444445444443211 011 1 12234445544 444 34567889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQG----LVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~----l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+.|-+++|+||+|||-|++|||.+.+.+++. +.+.+.|.+||||+++.+..|.+|.++|++|+|+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv 228 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence 9999999999999999999999998888764 3455779999999999999999999999999986
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.2e-36 Score=313.82 Aligned_cols=198 Identities=19% Similarity=0.261 Sum_probs=158.6
Q ss_pred cEEEEeeEEEcC------------CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCe--
Q 024529 55 IISFSDASFGYP------------GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK-- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 118 (266)
.++.+||++.++ +.+.+|+|+|+++++|++++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998873 123689999999999999999999999999999999999763 7899998763
Q ss_pred ------eeEEEEeccccCCCCCCCcHHHHHHH----hCC-CCc----HHHHHHHHHhcCCCcccccCCC-----CCCChH
Q 024529 119 ------VRIAVFSQHHVDGLDLSSNPLLYMMR----CFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGG 178 (266)
Q Consensus 119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~----~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 178 (266)
..++|++|+... ....++.+.+.. ..+ ..+ .+.+.++++.+++.+ ..++.+ +.||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~--~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDIH--SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEcccccc--CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHH
Confidence 248999998532 223344443321 111 112 234778999999974 445554 589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeC-CeEEecC
Q 024529 179 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSE-GKATPFH 253 (266)
Q Consensus 179 qkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~~ 253 (266)
|||||+||++|+.+|+||+|||||+|||+.+...+++.|++. +.|||++||+++ .+...||++++|++ |+++ +.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence 999999999999999999999999999999999988887654 679999999998 46778999999996 8886 67
Q ss_pred CCh
Q 024529 254 GTF 256 (266)
Q Consensus 254 g~~ 256 (266)
|+.
T Consensus 1103 G~~ 1105 (1470)
T PLN03140 1103 GPL 1105 (1470)
T ss_pred CCc
Confidence 875
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-37 Score=249.70 Aligned_cols=177 Identities=27% Similarity=0.459 Sum_probs=141.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeee----------EEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR----------IAVF 124 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~----------i~~~ 124 (266)
+++.+|++... +...+|.++||++.+||++.|.||||||||||||+|+|+.+|++|+|++.+... .-|+
T Consensus 2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 57788999888 456799999999999999999999999999999999999999999999875421 1122
Q ss_pred eccccCCCCCCCcHHHHHH--H-hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 125 SQHHVDGLDLSSNPLLYMM--R-CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 125 ~q~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
... ..+....+.++++. . .+...+...+.++++.+|+.+ ..+.|+.+||-|||+||+|||.++..++++|||||
T Consensus 81 GH~--~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 81 GHQ--PGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred hcc--ccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-ccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 221 22233334444432 2 222245678899999999985 56899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHH
Q 024529 202 SNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLIS 235 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~ 235 (266)
|++||..+...+-..+.. .++.||.+||..-.+.
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999888777764 3567999999876554
No 362
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=271.40 Aligned_cols=204 Identities=25% Similarity=0.381 Sum_probs=170.4
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
..+.+.+++|.|.+.+++|+++||++++|+.++++||+|+||||++++|..++++.+|.|..+++ ..||
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 35899999999987889999999999999999999999999999999999999999999998875 2499
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~~ 192 (266)
.+||+... +..+...+.....+....+++..+++...+.+..... ..-.|||||||||+|||+++.+
T Consensus 341 ~VPQDtvL---FNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 341 IVPQDTVL---FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred cCccccee---hhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 99998642 2334444444444456677777777766654333222 2346999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
|+||+|||.||+||..+.+++...|.+. +.|-+++.|.+..+.. ||.|++|++|+|+ ..|+.+++...
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~-erg~h~~ll~~ 487 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIV-ERGTHEELLAA 487 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEE-ecCcHHHHHHc
Confidence 9999999999999999999999988764 5699999999999985 9999999999997 58998887653
No 363
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=2e-36 Score=277.57 Aligned_cols=201 Identities=27% Similarity=0.429 Sum_probs=159.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC--
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL-- 132 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~-- 132 (266)
-+.++|+++.|. +..+++|+.|++.+|+.+||+|+|||||||+|++|+|-..|..-.+.+ ..+.++.....
T Consensus 75 dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~------y~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF------YLLSREIEPSEKQ 147 (614)
T ss_pred cceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch------hhhcccCCCchHH
Confidence 589999999995 567899999999999999999999999999999999998886544321 11111110000
Q ss_pred -----C-CCCc----------------------HHHHHHH----hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 024529 133 -----D-LSSN----------------------PLLYMMR----CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180 (266)
Q Consensus 133 -----~-~~~~----------------------~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 180 (266)
. .... ....... ......+.++..+|..+|+...+.++++.+|||||+
T Consensus 148 av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 0 0000 0000000 001122445667788889888888899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
.|++|||+|+.+|++|||||||||||++++.+|.++|.++.. ++++++|+.+++..+|++|+.+++++.+.|.||+++|
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 999999999999999999999999999999999999999987 8999999999999999999999999988899999999
Q ss_pred HHH
Q 024529 260 KKM 262 (266)
Q Consensus 260 ~~~ 262 (266)
...
T Consensus 308 ~~t 310 (614)
T KOG0927|consen 308 VKT 310 (614)
T ss_pred hhH
Confidence 643
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-35 Score=306.92 Aligned_cols=192 Identities=19% Similarity=0.221 Sum_probs=152.6
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC----CCCceEEEEcCe----------eeEEEEeccccCCCCC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSAK----------VRIAVFSQHHVDGLDL 134 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~~~----------~~i~~~~q~~~~~~~~ 134 (266)
+.+|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++|. ..++|++|+.... .
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~--~ 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF--P 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC--C
Confidence 56999999999999999999999999999999999986 579999998874 2389999985322 2
Q ss_pred CCcHHHHHH---Hh-CC-----CCcH----HH-HHHHHHhcCCCcccccC-----CCCCCChHHHHHHHHHHHHccCCCE
Q 024529 135 SSNPLLYMM---RC-FP-----GVPE----QK-LRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 135 ~~~~~~~~~---~~-~~-----~~~~----~~-~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
..++.+.+. .. .+ .... ++ +..+++.+|+.+. .+. .++.|||||||||+||++|+.+|+|
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-RNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-cCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 223333321 11 11 1111 12 3457899999743 333 4578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
|+|||||+|||+.+...+++.|++. +.|||+++|+. +.+..++|++++|++|+++ +.|+.++..+.++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv-~~G~~~~~~~yF~ 303 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKAKQYFE 303 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE-EECCHHHHHHHHH
Confidence 9999999999999999988887653 56899999996 7888899999999999996 7899888766654
No 365
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.8e-35 Score=308.35 Aligned_cols=184 Identities=21% Similarity=0.359 Sum_probs=146.3
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 148 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|... ..++|++|++.. +..+..+++.... .
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~l---~~~Tv~enI~~~~-~ 746 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAWI---MNATVRGNILFFD-E 746 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCcc---CCCcHHHHHHcCC-h
Confidence 458999999999999999999999999999999999999999999875 469999998742 2345555553221 1
Q ss_pred CcHHHHHHHHH---------hc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529 149 VPEQKLRAHLG---------SF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217 (266)
Q Consensus 149 ~~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l 217 (266)
.+.+++.++++ .+ |+.. ..+.++.+||||||||++|||||+.+|++|||||||++||+.+...+++.+
T Consensus 747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t-~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~ 825 (1560)
T PTZ00243 747 EDAARLADAVRVSQLEADLAQLGGGLET-EIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC 825 (1560)
T ss_pred hhHHHHHHHHHHhhhHHHHHHhhccchH-HhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 22223333333 33 4432 235678899999999999999999999999999999999999888776643
Q ss_pred -h-h-cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 218 -V-L-FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 218 -~-~-~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
. . .+.|+|+|||+++++. .||+|++|++|++. +.|+++++.+
T Consensus 826 ~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~-~~G~~~~l~~ 870 (1560)
T PTZ00243 826 FLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVE-FSGSSADFMR 870 (1560)
T ss_pred HHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EecCHHHHHh
Confidence 2 2 2579999999999986 69999999999996 7899888753
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-37 Score=244.31 Aligned_cols=190 Identities=23% Similarity=0.325 Sum_probs=153.1
Q ss_pred cEEEEeeEEEcC----CC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------
Q 024529 55 IISFSDASFGYP----GG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~----~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------- 118 (266)
.|.++|++|+|- ++ -++++++||+++.||++++-||||||||||||+|.|.|.|++|+|.+...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 588899998883 22 35899999999999999999999999999999999999999999975421
Q ss_pred ---------eeEEEEeccccCCCCCCCcHH----HHHHHh-C-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529 119 ---------VRIAVFSQHHVDGLDLSSNPL----LYMMRC-F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183 (266)
Q Consensus 119 ---------~~i~~~~q~~~~~~~~~~~~~----~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv 183 (266)
..+||+.|... .......+ +.+... . ......++..+|.++++++.++..++.++||||+|||
T Consensus 84 pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 24788888531 11111111 111111 1 1123456788999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
.|||.++.+-+||||||||+.||..++..+.+.+.+ .+.++|=|-||.+.-+.+|||++.+..
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999998888887764 356799999999999999999998754
No 367
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.2e-35 Score=308.43 Aligned_cols=194 Identities=22% Similarity=0.272 Sum_probs=154.4
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCe--------eeEEEEeccccCCCCCCCc
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK--------VRIAVFSQHHVDGLDLSSN 137 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~~~~ 137 (266)
+.+|+|+|+.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|. ..++|++|+..... ..+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~--~lT 255 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG--VMT 255 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCC--cCc
Confidence 46899999999999999999999999999999999999998 999998774 35899999853222 223
Q ss_pred HHHHHH---HhC--C-------CCc-H---------------------------HHHHHHHHhcCCCccc----ccCCCC
Q 024529 138 PLLYMM---RCF--P-------GVP-E---------------------------QKLRAHLGSFGVTGNL----ALQPMY 173 (266)
Q Consensus 138 ~~~~~~---~~~--~-------~~~-~---------------------------~~~~~~l~~~~l~~~~----~~~~~~ 173 (266)
+.+.+. ... . ... . ..+..+++.+||.+.. .+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 332221 110 0 000 0 1135678899996432 245678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHHhhcCEEEEEeCCe
Q 024529 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGK 248 (266)
Q Consensus 174 ~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~-~~~~~~~d~i~~l~~G~ 248 (266)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++. +.|+|+++|+. ..+..++|+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 99999999999999999999999999999999999999998888654 56999999986 57888999999999999
Q ss_pred EEecCCChhHHHHHHhc
Q 024529 249 ATPFHGTFHDYKKMLQS 265 (266)
Q Consensus 249 i~~~~g~~~~~~~~~~~ 265 (266)
++ +.|+.++..+..++
T Consensus 416 iv-y~G~~~~~~~yF~~ 431 (1470)
T PLN03140 416 IV-YQGPRDHILEFFES 431 (1470)
T ss_pred EE-EeCCHHHHHHHHHH
Confidence 96 78998887766543
No 368
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=233.03 Aligned_cols=187 Identities=26% Similarity=0.415 Sum_probs=148.0
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCe---------eeEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK---------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~~i~ 122 (266)
++.++||+.+.++ .-+|.++||+|.+||++.|+||||||||||+..+.|.+.+. +|+++.+++ ..+|
T Consensus 2 ~l~l~nvsl~l~g-~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCCC-ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 6889999998854 56899999999999999999999999999999999998874 799988764 3699
Q ss_pred EEeccccC--CCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 123 VFSQHHVD--GLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 123 ~~~q~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
+++|+... .+++..+....+..... ......+..+|++.|+++. .++.+.+||||||-||++-|+|+..|+.+|||
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~-f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD 159 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGA-FHQDPATLSGGQRARVALLRALLAQPKALLLD 159 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchh-hhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence 99999743 23333332211111111 1234457788999999864 56788999999999999999999999999999
Q ss_pred CCCCCCCHHH----HHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEE
Q 024529 200 EPSNHLDLDA----VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 200 EPt~~LD~~~----~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
||+|.||..- +++++..++..+...|+||||.+.+. ...||+.+
T Consensus 160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 9999999865 45566666677778999999999887 46677655
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.2e-35 Score=294.41 Aligned_cols=205 Identities=19% Similarity=0.340 Sum_probs=167.8
Q ss_pred CCCCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------
Q 024529 51 PGPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------- 118 (266)
Q Consensus 51 ~~~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------- 118 (266)
|....|+++|++.+|..+ +.+|+||||+|++||++||+|..|||||||+.+|..+..|.+|+|.+++.
T Consensus 1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 344579999999999644 67999999999999999999999999999999999999999999999874
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHH
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAra 188 (266)
.+++.+||+|... ..+...++ .-+...+++++.++|+.+++.+..... -..++|-||||.++||||
T Consensus 1214 srlsIIPQdPvLF---sGTvR~NL-DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLF---SGTVRFNL-DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred hcCeeeCCCCcee---cCcccccc-CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHH
Confidence 4799999998532 22222111 011234577888888888775433222 246899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|+++++||+|||+|+++|+++-..+.+.+++. ++|||.|.|+++.+.. ||||+||++|++++| +++.++.+
T Consensus 1290 LLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef-dsP~~Ll~ 1362 (1381)
T KOG0054|consen 1290 LLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF-DSPAELLS 1362 (1381)
T ss_pred HhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec-CChHHHHh
Confidence 99999999999999999999988888888763 5799999999999996 999999999999865 66666653
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.7e-34 Score=287.84 Aligned_cols=202 Identities=24% Similarity=0.400 Sum_probs=170.5
Q ss_pred CCCcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEecccc
Q 024529 52 GPPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHV 129 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~ 129 (266)
....++++|.+++++. ..+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|++.++|. ++|++|.+.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~pW 592 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQPW 592 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEeccccH
Confidence 4557999999999964 234899999999999999999999999999999999999999999999876 999999985
Q ss_pred CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
. ...+..+++.... ..++++.+++++.+.|..++.-. +.-+||||||||++||||+.++++|+|||
T Consensus 593 I---~ngTvreNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 593 I---QNGTVRENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD 668 (1381)
T ss_pred h---hCCcHHHhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc
Confidence 2 3445556554332 46788899999999887655433 34589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 200 EPSNHLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l-~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
.|+|++|...-..+++.. ... ++|+|+|||.++++. .||.|++|++|++. ..|+++++.+
T Consensus 669 DplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~-~~Gty~el~~ 731 (1381)
T KOG0054|consen 669 DPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP-HADQIIVLKDGKIV-ESGTYEELLK 731 (1381)
T ss_pred CcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEEEecCCeEe-cccCHHHHHh
Confidence 999999999887776643 322 579999999999988 59999999999997 6899999874
No 371
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=6.9e-35 Score=292.03 Aligned_cols=207 Identities=25% Similarity=0.356 Sum_probs=171.6
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i 121 (266)
..+.++++++.|+....+++++||.|++||+.|++|+|||||||++++|.|..+|++|++++.+. ..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 46899999999964433899999999999999999999999999999999999999999998553 249
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
||+||.......++......+.....+.. .+.+...++.+++.+. .+++++.+|||+|+|+++|.|++.+|++++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-ANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-hccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 99999854333333333333322222322 3457888999999864 678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 198 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
|||||+|+||.+++.+++.+.+. +++||++||.+++++..|||+.+|.+|++. .-|+.+++...
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~-ciGs~q~LKsr 788 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLR-CIGSPQELKSR 788 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeE-EecChHHHHhh
Confidence 99999999999999998887653 339999999999999999999999999996 56998888654
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=8.9e-34 Score=238.33 Aligned_cols=154 Identities=23% Similarity=0.295 Sum_probs=123.5
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce---------EEEEcC--------eeeEEEEeccccCCCCCC
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG---------TVFRSA--------KVRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G---------~i~~~~--------~~~i~~~~q~~~~~~~~~ 135 (266)
++++|++.+| +++|+||||||||||+++|+|+..|..| ++.+.+ ...+++++|++...+ .
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~--~ 90 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY--S 90 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce--e
Confidence 6789999999 9999999999999999999999876643 343322 246899999874321 0
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHH
Q 024529 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVE 211 (266)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~ 211 (266)
....+++.++++. . ...++++.+||||||||++||++++ .+|+++||||||++||+....
T Consensus 91 ------------~~~~~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~ 154 (197)
T cd03278 91 ------------IISQGDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVE 154 (197)
T ss_pred ------------EEehhhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHH
Confidence 0123456677776 2 3456788999999999999999986 567999999999999999999
Q ss_pred HHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 212 ALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 212 ~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
.+.+.+.+. +.+||+|||+++++. +||+++.+..
T Consensus 155 ~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 155 RFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred HHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 999888765 468999999999875 7999998864
No 373
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.6e-33 Score=268.79 Aligned_cols=207 Identities=21% Similarity=0.324 Sum_probs=167.2
Q ss_pred CcEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC---CceEEEEcCe--------
Q 024529 54 PIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK-------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~~~-------- 118 (266)
..+.+++++...++. +.+|++||.++++||+.||+||+||||||||++|+|.... .+|+|.++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 347888888887543 5799999999999999999999999999999999999864 7899999983
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHH--H--hCCC-----CcHHHHHHHHHhcCCCcccccCCCC-----CCChHHHHHHH
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMM--R--CFPG-----VPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVA 184 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~--~--~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqRv~ 184 (266)
...||+.|+.... ...++.+.+. . ..+. ...++++++++.+|+. ...+..++ .+|||||+||+
T Consensus 104 ~~s~yV~QdD~l~--~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 104 KISGYVQQDDVLL--PTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred heeEEEccccccc--ccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHH
Confidence 3589999986422 2334433332 1 1121 2346788999999997 45566664 59999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||.-|+.+|.||+|||||+|||..+...+++.|+++ +.|||++=|.+. .+-...|++++|.+|+++ |.|++++..
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v-y~G~~~~~~ 259 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV-YSGSPRELL 259 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE-EecCHHHHH
Confidence 999999999999999999999999998888877653 679999999984 466789999999999986 899988776
Q ss_pred HHHh
Q 024529 261 KMLQ 264 (266)
Q Consensus 261 ~~~~ 264 (266)
+.+.
T Consensus 260 ~ff~ 263 (613)
T KOG0061|consen 260 EFFS 263 (613)
T ss_pred HHHH
Confidence 6554
No 374
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.3e-32 Score=235.90 Aligned_cols=182 Identities=24% Similarity=0.324 Sum_probs=129.9
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHh--------CC--CCCCceEEEEcC--eeeEEEEeccccCCCCCCCcH
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA--------GE--LQPSSGTVFRSA--KVRIAVFSQHHVDGLDLSSNP 138 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~--------Gl--~~p~~G~i~~~~--~~~i~~~~q~~~~~~~~~~~~ 138 (266)
-|+|+|++|+.|.+++|+|+||||||||++.+. +. ..|..++..... -..+-++.|.+... +...++
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~-~~rs~~ 88 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR-TPRSNP 88 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC-CCCCcH
Confidence 489999999999999999999999999999662 11 123333322111 12345555654311 111111
Q ss_pred HHH------HHHh------------------CC--------------------C-CcHHHHHHHHHhcCCCcccccCCCC
Q 024529 139 LLY------MMRC------------------FP--------------------G-VPEQKLRAHLGSFGVTGNLALQPMY 173 (266)
Q Consensus 139 ~~~------~~~~------------------~~--------------------~-~~~~~~~~~l~~~~l~~~~~~~~~~ 173 (266)
..+ ++.. +. . ....++.++++.+|+.....++++.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 110 0000 00 0 0123456678889997534678899
Q ss_pred CCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEE---
Q 024529 174 TLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVV--- 244 (266)
Q Consensus 174 ~LSgGqkqRv~lAral~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l--- 244 (266)
+|||||+||++||++|+.+ |+++||||||+|||+..+..+.+.+.+ .+.|||+|||+++++. .||+++.|
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~ 247 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPE 247 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCC
Confidence 9999999999999999996 799999999999999999988887765 3679999999999986 69999999
Q ss_pred ---eCCeEEecCCC
Q 024529 245 ---SEGKATPFHGT 255 (266)
Q Consensus 245 ---~~G~i~~~~g~ 255 (266)
++|+++ +.|+
T Consensus 248 ~g~~~G~iv-~~Gt 260 (261)
T cd03271 248 GGDGGGQVV-ASGT 260 (261)
T ss_pred cCCCCCEEE-EeCC
Confidence 789986 5665
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.98 E-value=9.1e-32 Score=228.79 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=128.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEe-CCcEEEEECCCCchHHHHHHHHhC-CCCCCceEEEEc----------CeeeEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGID-LDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRS----------AKVRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~-~Ge~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~----------~~~~i~ 122 (266)
.|+++|+. .|.+. .+++|+.. +|++++|+||||||||||+++|++ ++-+..+..... ....++
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 37888988 66432 56677654 589999999999999999999996 433433333211 123577
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH--HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc---------
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--------- 191 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~--------- 191 (266)
+.+|.....+.... ..+.+.+...+ .+...++. ...++++.+|||||+||++|||||+.
T Consensus 80 ~~f~~~~~~~~~~r---------~~gl~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~ 149 (213)
T cd03279 80 FTFQLGGKKYRVER---------SRGLDYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGG 149 (213)
T ss_pred EEEEECCeEEEEEE---------ecCCCHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC
Confidence 77776521111000 01233333322 23334443 34567889999999999999999984
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 192 -KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 192 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
+|+++||||||++||+.+...+.+.+.+. +.|||+|||+++++..+||+++++++|.+
T Consensus 150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 150 ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 57899999999999999999888777654 56999999999999999999999998853
No 376
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=3e-32 Score=215.48 Aligned_cols=122 Identities=36% Similarity=0.553 Sum_probs=99.8
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHH
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLL 140 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~ 140 (266)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.|.+++. ..++|++|+... ....+...
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQL--FPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCH--HTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence 68999999999999999999999999999999999999999998763 358999998432 12222333
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccccCC----CCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQP----MYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
+ ....++.++++.+++.+ ..+.. +..||+|||||++||+||+.+|++||||||||
T Consensus 79 ~-------~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N-------ESDERIEEVLKKLGLED-LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H-------HHHHHHHHHHHHTTHGG-GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c-------ccccccccccccccccc-ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2 23456778888888754 23344 49999999999999999999999999999997
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=245.08 Aligned_cols=188 Identities=26% Similarity=0.340 Sum_probs=156.4
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (266)
+..|+++|++..-|++...++++||+|++||.+.|.||||||||||+|+|+|+-+--+|.|.......+-|+||.|+..
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p- 468 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP- 468 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC-
Confidence 4679999999999887889999999999999999999999999999999999999999999888677799999997522
Q ss_pred CCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCccccc------CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529 133 DLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLAL------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204 (266)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~ 204 (266)
..+..+.+..- ....+++++.++|.++|+.+ +.. +--..||+|||||+++||.|+++|++++|||.|++
T Consensus 469 --~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~-L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 469 --QGTLREALCYPNAAPDFSDAELVAVLHKVGLGD-LAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred --CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH-HHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 22433333211 11256788999999999863 221 12357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhh--cCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529 205 LDLDAVEALIQGLVL--FQGGILMVSHDEHLISGSVEELWVVS 245 (266)
Q Consensus 205 LD~~~~~~l~~~l~~--~~~tiiivtHd~~~~~~~~d~i~~l~ 245 (266)
||+.+...+.+.+++ .+.|||-|+|...... +.++.+.+.
T Consensus 546 LDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~l~l~ 587 (604)
T COG4178 546 LDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQLELL 587 (604)
T ss_pred cChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhheeec
Confidence 999999999999998 5779999999987765 566666554
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1.2e-30 Score=225.92 Aligned_cols=180 Identities=20% Similarity=0.228 Sum_probs=113.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC----------------CCCCceEEEEcCee
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE----------------LQPSSGTVFRSAKV 119 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----------------~~p~~G~i~~~~~~ 119 (266)
|+++|.. +|+ +..++.+++ |++++|+||||||||||+++|+++ +.+.+|... ...
T Consensus 4 i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~--~~~ 74 (243)
T cd03272 4 VIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV--MSA 74 (243)
T ss_pred EEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC--ceE
Confidence 5566643 463 455777776 789999999999999999999844 333333100 001
Q ss_pred eEEEEeccccCCCCCCCcH------HHHH---HHhCC-CCcHHHHHHHHHhcCCCc-------------------ccccC
Q 024529 120 RIAVFSQHHVDGLDLSSNP------LLYM---MRCFP-GVPEQKLRAHLGSFGVTG-------------------NLALQ 170 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~------~~~~---~~~~~-~~~~~~~~~~l~~~~l~~-------------------~~~~~ 170 (266)
.+.+.++++.......... ..+. ...+. ....+++...+..+++.. ...+.
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~ 154 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQ 154 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccc
Confidence 1222233211000000000 0000 00000 112233444444444421 12346
Q ss_pred CCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEE
Q 024529 171 PMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 171 ~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
++.+||||||||++|||||+ .+|+++||||||++||+.+...+++.+.+. +.+||++||+.+ +..+||++++|
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l 233 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGV 233 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEE
Confidence 78999999999999999996 368999999999999999999999988775 456888888865 56799999988
Q ss_pred e
Q 024529 245 S 245 (266)
Q Consensus 245 ~ 245 (266)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 5
No 379
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.97 E-value=3.1e-30 Score=232.89 Aligned_cols=185 Identities=24% Similarity=0.325 Sum_probs=142.9
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.+++-.++++.|+ + .-|+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ....+++|-||.....
T Consensus 341 ~lv~y~~~~k~~g-~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~~-- 413 (591)
T COG1245 341 TLVEYPDLKKTYG-D-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISPD-- 413 (591)
T ss_pred eeeecchheeecC-c-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecCC--
Confidence 4556666666663 2 2334344456778999999999999999999999999999998 5567899999975433
Q ss_pred CCCcHHHHHHHhCCC--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 024529 134 LSSNPLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~ 211 (266)
...++...+...... .+..--.++++-+.+. .+.++++.+|||||.|||+||.||..+++++|||||+++||.+.+-
T Consensus 414 ~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred CCCcHHHHHHHhhhhhcccchhHHhhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 344555554433221 1222345677888886 5678999999999999999999999999999999999999998766
Q ss_pred HHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 212 ALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 212 ~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
.+.+.++ +...|.++|.||+.++.-++||+++++.
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 5555444 3467999999999999999999999963
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.7e-30 Score=229.86 Aligned_cols=191 Identities=23% Similarity=0.316 Sum_probs=147.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.-|+++|+.|.|+....-+..||++|++||++-|+|.||||||||++++.|+++|++|+|.++|+. .+.-.
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p---------V~~e~ 391 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP---------VSAEQ 391 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc---------CCCCC
Confidence 459999999999755456789999999999999999999999999999999999999999988752 11100
Q ss_pred CCC------------cHHHHHHHhCCCCcHHHHHHHHHhcCCCccc--cc--CCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529 134 LSS------------NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL--AL--QPMYTLSGGQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 134 ~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~--~~~~~LSgGqkqRv~lAral~~~p~lll 197 (266)
... ..+..+.......+.+.+..+|+++.+.... .+ -..-.||.|||+|+++.-||+-+.+|++
T Consensus 392 ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv 471 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV 471 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEE
Confidence 000 0000011111114567777888877664211 11 2245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHH----HhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCC
Q 024529 198 LDEPSNHLDLDAVEALIQG----LVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG 254 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~----l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g 254 (266)
+||=-+.-||.-++++.+. +++.|+||+.||||-.... +|||++.+++|++.+..|
T Consensus 472 ~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 472 LDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG 531 (546)
T ss_pred eehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence 9999999999999887664 5677999999999977655 799999999999976543
No 381
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.9e-31 Score=236.24 Aligned_cols=200 Identities=29% Similarity=0.464 Sum_probs=160.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC---CCCCceEEEEcCeeeEEEEeccccCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
-|.++|.+.+- .++.+|.|.||.|-.|..+|++||||-||||||+.|+.- ++|. ..+-++.|+....
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---------IDvLlCEQEvvad 333 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---------IDVLLCEQEVVAD 333 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---------CceEeeeeeeeec
Confidence 48899999887 456789999999999999999999999999999999753 3332 1233444432211
Q ss_pred CCCCC-cH-----------------------------------HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCC
Q 024529 132 LDLSS-NP-----------------------------------LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 175 (266)
Q Consensus 132 ~~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 175 (266)
-.... ++ +..+........+.+++.+|.-+|++..+.++|...+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 00000 00 0001111112235678889999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255 (266)
Q Consensus 176 SgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~ 255 (266)
|||.|.||+|||||...|.+|+|||||||||....-|+-++|..+..|++|||||..|+..+|+.|+.|++.++..|.|+
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred hhHHHHHHh
Q 024529 256 FHDYKKMLQ 264 (266)
Q Consensus 256 ~~~~~~~~~ 264 (266)
|.-|..+..
T Consensus 494 Y~~FKKmY~ 502 (807)
T KOG0066|consen 494 YTLFKKMYA 502 (807)
T ss_pred HHHHHHHHH
Confidence 988866543
No 382
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.4e-29 Score=233.22 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=157.7
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------e
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V 119 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 119 (266)
+.+.+++++++..- .++|+||++.+||++||.|--|||+|-|+++|.|..++.+|+|.++|+ .
T Consensus 260 ~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 260 GEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred CCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 45678999987532 479999999999999999999999999999999999999999999886 2
Q ss_pred eEEEEecccc-CCCCCCCcHHHHH-----HHhCC--CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 120 RIAVFSQHHV-DGLDLSSNPLLYM-----MRCFP--GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 120 ~i~~~~q~~~-~~~~~~~~~~~~~-----~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
.++|++.+.. .++....+...++ ..... -. ..+.+.++.+.+++.-...+.++.+||||-+|||.|||
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence 5899998753 3333333332222 11110 11 23346677888888765667899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATP 251 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 251 (266)
.|+.+|++|||||||.|+|..++.++.+.+.+ .+.+||++|-++.++..+||||++|++|+++.
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999988887776654 47899999999999999999999999999963
No 383
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1.1e-29 Score=221.08 Aligned_cols=163 Identities=23% Similarity=0.231 Sum_probs=119.2
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCCCCCc-eEEEEcC--------------eeeEEEEeccccCC-------CCCCCcHH
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSA--------------KVRIAVFSQHHVDG-------LDLSSNPL 139 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~--------------~~~i~~~~q~~~~~-------~~~~~~~~ 139 (266)
..+++|+||||||||||+++|++++.+.. |++...+ ...+++++|++... .....+..
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 56999999999999999999999988763 4554322 13678888874211 00010100
Q ss_pred ----HHHHH-h-C--CCCcHHHHHHHHHhcCCCc-------------------ccccCCCCCCChHHHHHHHHHHHHc--
Q 024529 140 ----LYMMR-C-F--PGVPEQKLRAHLGSFGVTG-------------------NLALQPMYTLSGGQKSRVAFAKITF-- 190 (266)
Q Consensus 140 ----~~~~~-~-~--~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgGqkqRv~lAral~-- 190 (266)
..... . . .....+++.++|+.+++.. ...+.++.+||||||||++||+||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 00000 0 1 1123567888999999851 2234678999999999999999997
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe
Q 024529 191 --KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS 245 (266)
Q Consensus 191 --~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~ 245 (266)
.+|+++||||||++||+....++.+.+.+. +.+||++||+.+... .||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 578999999999999999999999988764 458999999976665 799998765
No 384
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.96 E-value=2.8e-29 Score=212.17 Aligned_cols=156 Identities=23% Similarity=0.311 Sum_probs=114.8
Q ss_pred ceEEEeCCcEEEEECCCCchHHHHHHHHh----CCCCCCceEEEEc--------CeeeEEEEeccc-cCCCCCCC--cHH
Q 024529 75 LNFGIDLDSRIAMVGPNGIGKSTILKLIA----GELQPSSGTVFRS--------AKVRIAVFSQHH-VDGLDLSS--NPL 139 (266)
Q Consensus 75 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~----Gl~~p~~G~i~~~--------~~~~i~~~~q~~-~~~~~~~~--~~~ 139 (266)
.++++.+| +++|+||||||||||+++|. |...|+.|.+... ....+++.+|++ ...+.+.. +.+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 35667777 99999999999999999994 9988888765311 124688888875 21111111 122
Q ss_pred HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH------HHHHHHHccCCCEEEEeCCCCCCCHHHHH-H
Q 024529 140 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR------VAFAKITFKKPHIILLDEPSNHLDLDAVE-A 212 (266)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR------v~lAral~~~p~lllLDEPt~~LD~~~~~-~ 212 (266)
.++. .....++.+.+ ++++.+||+||+|| ++||||++.+|+++||||||++||+..+. .
T Consensus 95 ~~~~----~~~~~~~~~~~----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~ 160 (204)
T cd03240 95 ENVI----FCHQGESNWPL----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES 160 (204)
T ss_pred hcee----eechHHHHHHH----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence 2211 11222333222 56788999999996 78999999999999999999999999988 8
Q ss_pred HHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 213 LIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 213 l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
+.+.+.+. +.+||++||+++++. .||+++.|++
T Consensus 161 l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~ 197 (204)
T cd03240 161 LAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEee
Confidence 88877653 458999999999876 6999999964
No 385
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1e-30 Score=222.14 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=118.9
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (266)
|+++|+. .|+ +..++++++| ++++|+||||||||||+++|.-..-.+.... ....++++++........+
T Consensus 6 l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~---~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM---RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh---hhhhHHHHhcCCCCCCCCc
Confidence 6778876 784 5568899987 8999999999999999999982211100000 0123445544431111111
Q ss_pred CcH----------HHHHH-HhCCCCcHH---HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc----CCCEEE
Q 024529 136 SNP----------LLYMM-RCFPGVPEQ---KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIIL 197 (266)
Q Consensus 136 ~~~----------~~~~~-~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~----~p~lll 197 (266)
... ...+. ......... ...++++.+++.+ ..++++..||+|||||++||+|++. +|++++
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~-~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili 154 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPK-KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV 154 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccc-ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 000 00000 000000000 0134556677754 4566789999999999999999964 589999
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 198 LDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 198 LDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
|||||++||+.++..+.+.+.+. +.++|++||+. ++.++||++++|..
T Consensus 155 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 155 MDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 99999999999999999988876 35899999996 45679999999964
No 386
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=7.4e-30 Score=205.03 Aligned_cols=195 Identities=26% Similarity=0.377 Sum_probs=150.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~ 123 (266)
++.++||+..- -|-.+|.++..||++-++|||||||||||-.++|+. |-+|+|.+.|.. .-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 57788887543 267889999999999999999999999999999986 678999988752 2456
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc-----C--CCE
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-----K--PHI 195 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~-----~--p~l 195 (266)
+.|+... .+...++.++....+. .....+.++...+++++. ..+.+..|||||=|||-+|...++ | .++
T Consensus 77 LsQqq~p--~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DK-L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 77 LSQQQTP--PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDK-LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred HhhccCC--cchhhhhhhhhhcCchHHHHHHHHHHHhhhcccch-hhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 6665422 2233344444332222 123456677888999764 467889999999999999998764 3 469
Q ss_pred EEEeCCCCCCCHHHHHHH---HHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 196 ILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l---~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||+|||.|+||......+ +..+.+.+.+|||++||++--.+.+|++|.++.|++. ..|..++.
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~-~~G~~~eV 219 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL-ASGRREEV 219 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEE-eecchhhh
Confidence 999999999999866554 4555556789999999999999999999999999996 57877665
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.96 E-value=1.4e-28 Score=213.81 Aligned_cols=181 Identities=19% Similarity=0.185 Sum_probs=121.0
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC----------------ee
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----------------KV 119 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----------------~~ 119 (266)
|+++|. +.|.+ .. +|.+.++ +++|+||||||||||+.+|+++..+..|++.... ..
T Consensus 4 i~l~nf-~~~~~-~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~ 75 (247)
T cd03275 4 LELENF-KSYKG-RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSA 75 (247)
T ss_pred EEEECc-cccCC-Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceE
Confidence 677776 55632 21 2333344 9999999999999999999999887777664321 11
Q ss_pred eE--EEEeccccCCC---CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc---------------------cccCCCC
Q 024529 120 RI--AVFSQHHVDGL---DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN---------------------LALQPMY 173 (266)
Q Consensus 120 ~i--~~~~q~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------~~~~~~~ 173 (266)
.+ .|..++..... ........+. ..........+.++++.+++... ..++++.
T Consensus 76 ~v~~~f~~~~~~~~~~~~~~~~~~~~~~-ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~ 154 (247)
T cd03275 76 YVTAVYEDDDGEEKTFRRIITGGSSSYR-INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD 154 (247)
T ss_pred EEEEEEEcCCCcEEEEEEEEECCceEEE-ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence 22 23222211000 0000000000 00112345566788888888421 1123458
Q ss_pred CCChHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 174 TLSGGQKSRVAFAKITFKK----PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 174 ~LSgGqkqRv~lAral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
+||+|||||++||++++.+ |+++||||||++||+.....+.+.+.+. +.+||+|||+.+++ .+||++++|..
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 9999999999999999864 8999999999999999999888888765 45899999998876 57999998863
No 388
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=1.8e-27 Score=237.35 Aligned_cols=106 Identities=25% Similarity=0.357 Sum_probs=92.2
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEE
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMV 227 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiiv 227 (266)
..+.++.+|+.....++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+++.|.+. +.|||+|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567888899743467889999999999999999999999 999999999999999999888877653 6799999
Q ss_pred ecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHHH
Q 024529 228 SHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK 261 (266)
Q Consensus 228 tHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 261 (266)
||+++++. .||+++.| ++|+++ +.|+++++.+
T Consensus 890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~ 927 (943)
T PRK00349 890 EHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVAK 927 (943)
T ss_pred ecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHHh
Confidence 99999986 79999999 689986 6898888754
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=8.5e-28 Score=202.17 Aligned_cols=160 Identities=23% Similarity=0.265 Sum_probs=116.3
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc-----eE----EEEcC--eeeEEEEeccccCCCCCCCcHHH
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GT----VFRSA--KVRIAVFSQHHVDGLDLSSNPLL 140 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~----i~~~~--~~~i~~~~q~~~~~~~~~~~~~~ 140 (266)
++++++++.+| +.+|+||||||||||+.+|........ |. +...+ ...+.+.++.... .. +.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~--~~--~~-- 84 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGL--DA--NP-- 84 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCc--cC--Cc--
Confidence 47778888887 889999999999999999974332221 11 00111 2345666655321 11 10
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 024529 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVEALIQG 216 (266)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral----~~~p~lllLDEPt~~LD~~~~~~l~~~ 216 (266)
........+.++++. . ...++++.+||+|||||++||+|+ +.+|+++||||||++||+.+...+.+.
T Consensus 85 -----~~~~~~~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~ 155 (198)
T cd03276 85 -----LCVLSQDMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDL 155 (198)
T ss_pred -----CCHHHHHHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHH
Confidence 111224566677766 2 345678899999999999999999 689999999999999999999888887
Q ss_pred Hhhc-----C-CEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 217 LVLF-----Q-GGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 217 l~~~-----~-~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
|.+. + .+||++||+++.+..+ |+|.+|..++
T Consensus 156 l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 156 LVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 7552 2 3799999999999875 9999998764
No 390
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=5.2e-27 Score=243.38 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=90.1
Q ss_pred HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEec
Q 024529 156 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF---KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSH 229 (266)
Q Consensus 156 ~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtH 229 (266)
++++.+|+.+...++++.+|||||+||++||++|+ .+|++|||||||+|||+.++..+++.|.+ .+.|||+|||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 47888999643257899999999999999999997 69999999999999999999988887754 3679999999
Q ss_pred CHHHHHhhcCEEEEEe------CCeEEecCCChhHHHH
Q 024529 230 DEHLISGSVEELWVVS------EGKATPFHGTFHDYKK 261 (266)
Q Consensus 230 d~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~ 261 (266)
+++++ .+||++++|. +|+++ ..|+++++..
T Consensus 871 dl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 871 NMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred CHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 99999 6999999996 67886 6898888754
No 391
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=4.7e-27 Score=217.42 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=153.3
Q ss_pred CCCCcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---eEEEEec
Q 024529 51 PGPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---RIAVFSQ 126 (266)
Q Consensus 51 ~~~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---~i~~~~q 126 (266)
++..+|++++|++.-|. +..+++|+||+|+.|+-+.|+||||||||+|||+|+|+-+..+|.+....+. .+-|+||
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ 508 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ 508 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence 44578999999999887 6677899999999999999999999999999999999999999999765443 4899999
Q ss_pred cccCCCCCCCcHHHHHHH-------hCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHH
Q 024529 127 HHVDGLDLSSNPLLYMMR-------CFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral 189 (266)
.|+- ... +..+.+.. .....+.+++...|+.+++.+-. ...-...||+||+||+++||.+
T Consensus 509 rPYm--t~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 509 RPYM--TLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred CCCc--ccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 9852 221 22222110 01124456777777776654211 1112468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
.++|++-+|||.||++|.+...++.+.+++.+.|.|-|+|+..+.. +=|.++-|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hhhEEEEecC
Confidence 9999999999999999999999999999999999999999988765 6788888875
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2e-26 Score=229.58 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=89.8
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEE
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK---KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMV 227 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiiv 227 (266)
..++++.+||.....++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+++.|.+. +.|||++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45677788986434578899999999999999999997 59999999999999999999888877654 6799999
Q ss_pred ecCHHHHHhhcCEEEEE------eCCeEEecCCChhHH
Q 024529 228 SHDEHLISGSVEELWVV------SEGKATPFHGTFHDY 259 (266)
Q Consensus 228 tHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~ 259 (266)
||+++++. .||++++| ++|+++ +.|+++++
T Consensus 888 ~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEEV 923 (924)
T ss_pred eCCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHHh
Confidence 99999986 69999999 689997 67888764
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=208.33 Aligned_cols=207 Identities=22% Similarity=0.347 Sum_probs=165.7
Q ss_pred CCCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------
Q 024529 50 RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------- 119 (266)
Q Consensus 50 ~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------- 119 (266)
.+++++|++++++..-..+...+++|||+|..||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++++.
T Consensus 252 ~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 252 TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 4567899999999876444467999999999999999999999999999999999999999999988753
Q ss_pred ---eEEEEecccc-CCCCCCCcHHHHHHH-hCC-------C-Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529 120 ---RIAVFSQHHV-DGLDLSSNPLLYMMR-CFP-------G-VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 182 (266)
Q Consensus 120 ---~i~~~~q~~~-~~~~~~~~~~~~~~~-~~~-------~-~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR 182 (266)
.++|+|.+.. .++-+..+..+++.. .+. . .. ...+.++++.|++...-...++.+||||.+||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK 411 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK 411 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceeh
Confidence 4789998752 233333333333221 110 0 11 34456778888886444557789999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
+-+||-|..+|++||+.+||.|||..+.+.+.+.|.+ .+.+|+++|-|++++..+||||.+|.+|++. ...+++
T Consensus 412 ~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~-~~~~~~ 488 (501)
T COG3845 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV-GIVPPE 488 (501)
T ss_pred hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee-cccccc
Confidence 9999999999999999999999999999988887654 4678999999999999999999999999996 334433
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.94 E-value=2.4e-26 Score=189.09 Aligned_cols=196 Identities=22% Similarity=0.250 Sum_probs=150.7
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eE
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RI 121 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i 121 (266)
...|++.+++|+|+...+++-|+|++++.|....++|.||||||||||+|+|-.-.-.|.|...++. ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 3469999999999877789999999999999999999999999999999999766666888765541 13
Q ss_pred EEEecccc-----C-CCCCCC-cHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 122 AVFSQHHV-----D-GLDLSS-NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 122 ~~~~q~~~-----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
.|+.-+-. . ..++.. -....+.....+.+.++-+.+++.+.++- .-+.+.+|-|||+||.||.-|++.-+
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl---~WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDL---RWRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccc---eEEEeeccccchhhhHHHHhccccee
Confidence 33322100 0 000000 01112222222334456666777777742 23567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATP 251 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 251 (266)
+|||||-|-.||...+..+++.+++ .+.||+..||-.+-++.+.++++.|+.|+++.
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 9999999999999999999999975 36799999999999999999999999999963
No 395
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=6e-27 Score=193.46 Aligned_cols=203 Identities=20% Similarity=0.290 Sum_probs=155.6
Q ss_pred CcEEEEeeEEEcC---CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE-----EcC--------
Q 024529 54 PIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----RSA-------- 117 (266)
Q Consensus 54 ~~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----~~~-------- 117 (266)
+.+.++|++..+. |...+++++|++++.||+-|++|.+|||||-..|.|+|..+-. =.|. ++.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccchhhcCCh
Confidence 4578888888774 2235889999999999999999999999999999999987632 1121 111
Q ss_pred e-------eeEEEEeccccCCCCCCCcHHHHHHHhC------------CCCcHHHHHHHHHhcCCCcc--cccCCCCCCC
Q 024529 118 K-------VRIAVFSQHHVDGLDLSSNPLLYMMRCF------------PGVPEQKLRAHLGSFGVTGN--LALQPMYTLS 176 (266)
Q Consensus 118 ~-------~~i~~~~q~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LS 176 (266)
+ ..++++||++..-++.+...-..+.... ......++.++|.++|+.++ ....++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 0 2478889988655554433222221111 12346778899999999653 3445789999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEec
Q 024529 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPF 252 (266)
Q Consensus 177 gGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 252 (266)
-||-|+|.||.|++.+|++||.|||||.+|+.+..+++..|... +.||+++|||+..+..+||++-||.-|+-+ .
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~-E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTV-E 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccc-c
Confidence 99999999999999999999999999999999999998888654 357999999999999999999999888764 3
Q ss_pred CCChhH
Q 024529 253 HGTFHD 258 (266)
Q Consensus 253 ~g~~~~ 258 (266)
.++.++
T Consensus 240 Sa~~e~ 245 (330)
T COG4170 240 SAPSEE 245 (330)
T ss_pred ccchhH
Confidence 444444
No 396
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.93 E-value=2.2e-25 Score=204.45 Aligned_cols=184 Identities=24% Similarity=0.353 Sum_probs=148.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC-C
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD-L 134 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~-~ 134 (266)
|.++|+-.--|.+..++..++|.|++|-.+.|+||||||||+|+|+|.|+.+...|.........+.|+||.|.-... +
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtl 561 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTL 561 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcc
Confidence 888999888887778899999999999999999999999999999999999999999888777889999999852211 1
Q ss_pred ------CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC---------CCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 135 ------SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
..+. +.+.. .+..+++...+|..+.++ .+..+. -..||||||||+++||.+.++|+.-+||
T Consensus 562 RDQIIYPdS~-e~~~~--kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 562 RDQIIYPDSS-EQMKR--KGYTDQDLEAILDIVHLE-HILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred cceeecCCcH-HHHHh--cCCCHHHHHHHHHHhhHH-HHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 1111 22222 245566677777766653 222222 2479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEE
Q 024529 200 EPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
|.||++.++....+.+..+..+.+.|-|||.+.... +-+.++-+
T Consensus 638 EcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk-~h~~ll~~ 681 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK-YHTHLLEF 681 (728)
T ss_pred hhhcccccchHHHHHHHHHhcCceEEEeecCccHHH-HHHHHHhc
Confidence 999999999999999999999999999999998876 44555544
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.93 E-value=1.4e-25 Score=188.89 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=103.9
Q ss_pred eeeceEEEeCCc-EEEEECCCCchHHHHHHHHh--------CCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHH
Q 024529 72 FKNLNFGIDLDS-RIAMVGPNGIGKSTILKLIA--------GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM 142 (266)
Q Consensus 72 l~~vsl~i~~Ge-~~~l~G~nGsGKSTLl~~l~--------Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 142 (266)
+-++||++.+|+ +++|+||||||||||||+|+ |...|....+ .++|+.|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------~~~~~~~~--------------- 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------SLPVFENI--------------- 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------cCcCccEE---------------
Confidence 467899999996 79999999999999999998 5544432111 11222221
Q ss_pred HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHh
Q 024529 143 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI----QGLV 218 (266)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~----~~l~ 218 (266)
+..++..+ ......+++|+||+|++.+++++ .+|+++|+||||++||+.....+. +.+.
T Consensus 76 ---------------~~~lg~~~-~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~ 138 (200)
T cd03280 76 ---------------FADIGDEQ-SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL 138 (200)
T ss_pred ---------------EEecCchh-hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11222221 22345689999999999999884 899999999999999999876664 3344
Q ss_pred hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 219 LFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 219 ~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
+.+.++|++||+.+ +..+||+++.|++|++.
T Consensus 139 ~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 139 ERGALVIATTHYGE-LKAYAYKREGVENASME 169 (200)
T ss_pred hcCCEEEEECCHHH-HHHHHhcCCCeEEEEEE
Confidence 45679999999965 55789999999999985
No 398
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=7.2e-26 Score=225.81 Aligned_cols=202 Identities=23% Similarity=0.321 Sum_probs=147.2
Q ss_pred cEEEEeeEEEcC---CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--CCceEEEEcCe--------eeE
Q 024529 55 IISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAK--------VRI 121 (266)
Q Consensus 55 ~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--------~~i 121 (266)
+..-.|+.+.-+ +.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|. ..+
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 455566655442 34579999999999999999999999999999999999642 23567777774 358
Q ss_pred EEEeccccCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCcccccC----CCCCCChHHHHHHHHHHHHc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTGNLALQ----PMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~l~~~~~~~----~~~~LSgGqkqRv~lAral~ 190 (266)
||+.|+......++..+-..+. +.....+ .+.++++++.++|.+ ..+. +...||..||+|+.||--|+
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-~~daiVG~~G~GLs~eQRKrLTIgVELv 945 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE-YADALVGLPGSGLSTEQRKRLTIGVELV 945 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh-hhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence 9999986433222222211111 1111221 245788899898863 3333 44559999999999999999
Q ss_pred cCC-CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHH-HHhhcCEEEEEeCCeEEecCCChh
Q 024529 191 KKP-HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHL-ISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 191 ~~p-~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~-~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
.+| .||+|||||||||..+...+++.+++ .|.||+++-|.+.. +-+..|+++.|+.|.-..|.|+..
T Consensus 946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 999 89999999999999998888777665 47799999998853 444689999998654334777643
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.6e-24 Score=182.91 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=104.9
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceE---------EEEcCe--eeEEEEeccccCCCCCCCcHH-
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT---------VFRSAK--VRIAVFSQHHVDGLDLSSNPL- 139 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~---------i~~~~~--~~i~~~~q~~~~~~~~~~~~~- 139 (266)
++++.+++.+| +.+|+|||||||||||.+|.-..-..... ....+. ..+-..+........+. ++.
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~-n~~~ 91 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVD-NLCQ 91 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccC-CceE
Confidence 45667777665 78999999999999999986654221110 111111 11222222111000100 000
Q ss_pred ----HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHH
Q 024529 140 ----LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVE 211 (266)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral----~~~p~lllLDEPt~~LD~~~~~ 211 (266)
...... ..... .+.+..+.-.....+..+.+||+||||++.+|+++ +.+|+++|+||||++||+.+..
T Consensus 92 ~~~q~~~~~~-~~~~~---~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~ 167 (213)
T cd03277 92 FLPQDRVGEF-AKLSP---IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNER 167 (213)
T ss_pred EEchHHHHHH-HhCCh---HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHH
Confidence 000000 01111 12233333222334567789999999998877554 5899999999999999999999
Q ss_pred HHHHHHhhc----C-CEEEEEecCHHHHHhhcC--EEEEEeCCe
Q 024529 212 ALIQGLVLF----Q-GGILMVSHDEHLISGSVE--ELWVVSEGK 248 (266)
Q Consensus 212 ~l~~~l~~~----~-~tiiivtHd~~~~~~~~d--~i~~l~~G~ 248 (266)
.+++.+.+. + .++|++||++.....+|| ++++|.+|+
T Consensus 168 ~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 168 KVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 888877543 3 379999999887777776 778888886
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=2.7e-24 Score=194.57 Aligned_cols=180 Identities=22% Similarity=0.281 Sum_probs=122.2
Q ss_pred eeEEEcCCCCcceeeceE-EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC---------------------
Q 024529 60 DASFGYPGGPILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--------------------- 117 (266)
Q Consensus 60 ~l~~~y~~~~~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--------------------- 117 (266)
++..+|+.+..-| ..| ...+|.++||+|+||-||||-+|+|+|.+.|.=|.-.-..
T Consensus 79 e~vHRYg~NgFkL--~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l 156 (591)
T COG1245 79 EVVHRYGVNGFKL--YRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156 (591)
T ss_pred cceeeccCCceEE--ecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHH
Confidence 4667785332222 222 2478999999999999999999999999999877542100
Q ss_pred ---eeeEEEEeccccC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 118 ---KVRIAVFSQHHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 118 ---~~~i~~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
..++..-+|.... .-.+..++-+.+... .......++.+.++|. ...++.+++|||||.||++||.++++++
T Consensus 157 ~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~---de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 157 YEGELRAVHKPQYVDLIPKVVKGKVGELLKKV---DERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDA 232 (591)
T ss_pred HcCCcceecchHHHHHHHHHhcchHHHHHHhh---hhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccC
Confidence 0111111111000 000000000000000 0112456778888996 4678999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVS 245 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~ 245 (266)
+++++|||||.||...+....+.++ +-+++||+|.||+..+.-++|-|.++-
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999987655444444 446799999999999999999988875
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.91 E-value=9.7e-24 Score=189.17 Aligned_cols=177 Identities=24% Similarity=0.322 Sum_probs=138.2
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--------CCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHH
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--------LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY 141 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 141 (266)
.+++|+||++++|++++|+|+|||||||||++|+|. ++|++|.|.+....--+.+|......+. ..+.+..
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tileh 475 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILEH 475 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHHHH
Confidence 479999999999999999999999999999999985 5789998876544423334443222222 2344444
Q ss_pred HHHhCCCCcHHHHHHHHHhcCCCccc-ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-
Q 024529 142 MMRCFPGVPEQKLRAHLGSFGVTGNL-ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL- 219 (266)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~- 219 (266)
+.... -+...+.++|...|+.+.. -.++.++||.|||.|+.||++++..|.+++.||--++||+.+...+...+.+
T Consensus 476 l~s~t--GD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel 553 (593)
T COG2401 476 LRSKT--GDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553 (593)
T ss_pred Hhhcc--CchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence 44322 2334567889999997643 3456899999999999999999999999999999999999998888776654
Q ss_pred ---cCCEEEEEecCHHHHHhh-cCEEEEEeCCeE
Q 024529 220 ---FQGGILMVSHDEHLISGS-VEELWVVSEGKA 249 (266)
Q Consensus 220 ---~~~tiiivtHd~~~~~~~-~d~i~~l~~G~i 249 (266)
.+.|+++|||+.++...+ -|.++.+.-|+.
T Consensus 554 aRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 554 AREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred HHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 467999999999999988 688888876665
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.89 E-value=2.3e-22 Score=166.33 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 175 LSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 175 LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
||+||+||++|||+++ .+|+++++|||+++||+.....+.+.+.+. +.++|++||+.+.+. .+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999998888877653 468999999998876 7999998864
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.89 E-value=5.7e-23 Score=167.54 Aligned_cols=137 Identities=24% Similarity=0.292 Sum_probs=97.2
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHH
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ 152 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (266)
...++.+.++.++.|+|||||||||+++.+....-..+|.+......+.++ ....... ..
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~--------~~--- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGC---------IVAAVSA--------EL--- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCC---------cceeeEE--------EE---
Confidence 445666666679999999999999999998776555544443211000000 0000000 00
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEE
Q 024529 153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGIL 225 (266)
Q Consensus 153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tii 225 (266)
+ .....||+||+||++||++|.. +|+++|+|||++++|+.....+.+.+.++ +.++|
T Consensus 72 ----------i------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vi 135 (162)
T cd03227 72 ----------I------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135 (162)
T ss_pred ----------e------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0 0112399999999999999986 78999999999999999988877766543 46899
Q ss_pred EEecCHHHHHhhcCEEEEEeC
Q 024529 226 MVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 226 ivtHd~~~~~~~~d~i~~l~~ 246 (266)
++||+.++.. .+|+++.|..
T Consensus 136 i~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 136 VITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred EEcCCHHHHH-hhhhEEEEEE
Confidence 9999999987 5899999864
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.87 E-value=4.4e-22 Score=170.25 Aligned_cols=148 Identities=17% Similarity=0.141 Sum_probs=109.3
Q ss_pred CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEE-EEeccccCCCCCCCcHHHHHHHhC
Q 024529 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA-VFSQHHVDGLDLSSNPLLYMMRCF 146 (266)
Q Consensus 68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~~~~~~~~~~~~~ 146 (266)
...+.+|+++++.++++++|+||||+|||||+++++-. .+ -..+| |+|....
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~--la~~g~~vpa~~~----------------- 68 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL--MAQIGCFVPCDSA----------------- 68 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH--HHHhCCCcCcccE-----------------
Confidence 34678999999999999999999999999999999721 00 00011 1111100
Q ss_pred CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHHHHHH-HHHhh-
Q 024529 147 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHLDLDAVEALI-QGLVL- 219 (266)
Q Consensus 147 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLDEP---t~~LD~~~~~~l~-~~l~~- 219 (266)
.-..+.+++..+++.+. ....+|.|+++++.+++++ +.+|+++||||| |+++|+.+..+.. +.+.+
T Consensus 69 ---~~~~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~ 141 (222)
T cd03285 69 ---DIPIVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQ 141 (222)
T ss_pred ---EEeccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhc
Confidence 00012334566776533 2578999999999999999 899999999999 9999998876543 66654
Q ss_pred cCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 220 FQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 220 ~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
.+.++|++||+ ..+.++||++..+++|++.
T Consensus 142 ~~~~vlisTH~-~el~~~~~~~~~i~~g~~~ 171 (222)
T cd03285 142 IKCFCLFATHF-HELTALADEVPNVKNLHVT 171 (222)
T ss_pred CCCeEEEEech-HHHHHHhhcCCCeEEEEEE
Confidence 46789999996 5567799999999988874
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.6e-21 Score=172.19 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=65.2
Q ss_pred CCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 173 YTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 173 ~~LSgGqkqRv~lAral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
..|||||+||++||++++. +|+++||||||++||+.....+.+.+.+. +.++|++||+++.. .+||++++|.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEE
Confidence 3599999999999987653 99999999999999999999998888765 45899999999965 58999999987
Q ss_pred C
Q 024529 247 G 247 (266)
Q Consensus 247 G 247 (266)
|
T Consensus 248 ~ 248 (276)
T cd03241 248 E 248 (276)
T ss_pred e
Confidence 5
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=7.1e-21 Score=198.11 Aligned_cols=106 Identities=26% Similarity=0.301 Sum_probs=91.9
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEE
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMV 227 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~---p~lllLDEPt~~LD~~~~~~l~~~l---~~~~~tiiiv 227 (266)
..+.|..+||..-...++..+|||||.||+-||.-|..+ +.+++|||||.||++.....+++.| .+.+.|||+|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 345677889976667889999999999999999999865 7899999999999999999888775 4568899999
Q ss_pred ecCHHHHHhhcCEEEEEe------CCeEEecCCChhHHHH
Q 024529 228 SHDEHLISGSVEELWVVS------EGKATPFHGTFHDYKK 261 (266)
Q Consensus 228 tHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~ 261 (266)
.||++.+.. ||.|+-|- .|+|+ +.|+++++.+
T Consensus 1759 eH~~~~i~~-aD~iidlgp~gG~~GG~iv-a~Gtp~~i~~ 1796 (1809)
T PRK00635 1759 DHDPALLKQ-ADYLIEMGPGSGKTGGKIL-FSGPPKDISA 1796 (1809)
T ss_pred eCCHHHHHh-CCEEEEcCCCcccCCCEEE-EEeCHHHHhh
Confidence 999999986 99999994 46776 8999999865
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.86 E-value=3.7e-22 Score=168.32 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=96.9
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHhCC-CCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcH
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE 151 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (266)
-..++++.+|++++|+|||||||||||++|++. +.+..|.........++++.|
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dq------------------------- 74 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDR------------------------- 74 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCE-------------------------
Confidence 455777779999999999999999999999953 223333222111111111111
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCEEEEE
Q 024529 152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQGGILMV 227 (266)
Q Consensus 152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~~~~tiiiv 227 (266)
.+..++..+. .....+.+|++++| +..+.+++.+|+++|+||||+|+|+.....+ ++.+.+.+.++|++
T Consensus 75 -----i~~~~~~~d~-i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~ 147 (202)
T cd03243 75 -----IFTRIGAEDS-ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA 147 (202)
T ss_pred -----EEEEecCccc-ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 1111222211 12344677777765 6666788899999999999999999876554 34444557799999
Q ss_pred ecCHHHHHhhcCEEEEEeCCeEE
Q 024529 228 SHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 228 tHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
||+.+++. .|+++..++.+++.
T Consensus 148 tH~~~~~~-~~~~~~~l~~~~~~ 169 (202)
T cd03243 148 THFHELAD-LPEQVPGVKNLHME 169 (202)
T ss_pred CChHHHHH-HhhcCCCeEEEEEE
Confidence 99998877 57788788777764
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.7e-20 Score=179.74 Aligned_cols=105 Identities=27% Similarity=0.362 Sum_probs=89.2
Q ss_pred HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEe
Q 024529 155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVS 228 (266)
Q Consensus 155 ~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivt 228 (266)
.+.|..+||..-...++..+|||||.|||-||.-|.... .++||||||.||-...+..+++.|.+ .+.|||+|.
T Consensus 803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE 882 (935)
T COG0178 803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882 (935)
T ss_pred HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 344556788765677899999999999999999998876 99999999999999998888777654 477999999
Q ss_pred cCHHHHHhhcCEEEEEe------CCeEEecCCChhHHHH
Q 024529 229 HDEHLISGSVEELWVVS------EGKATPFHGTFHDYKK 261 (266)
Q Consensus 229 Hd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~ 261 (266)
|+++.+. .||.|+-|- .|+|+ +.|+++++.+
T Consensus 883 HNLdVIk-~AD~IIDLGPeGG~~GG~iv-a~GTPeeva~ 919 (935)
T COG0178 883 HNLDVIK-TADWIIDLGPEGGDGGGEIV-ASGTPEEVAK 919 (935)
T ss_pred cccceEe-ecCEEEEcCCCCCCCCceEE-EecCHHHHHh
Confidence 9999987 699999883 46675 7899999875
No 409
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=170.16 Aligned_cols=179 Identities=22% Similarity=0.290 Sum_probs=135.2
Q ss_pred EEcCCCCcceeeceEEEeCCc-----EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCc
Q 024529 63 FGYPGGPILFKNLNFGIDLDS-----RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN 137 (266)
Q Consensus 63 ~~y~~~~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~ 137 (266)
++|++-+..+.+..|.|..|+ ++..+|.||.|||||+++++|.++|++|.=. ....++|-||....... .+
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~--p~lnVSykpqkispK~~--~t 418 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI--PVLNVSYKPQKISPKRE--GT 418 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc--cccceeccccccCcccc--ch
Confidence 557665667789999999885 6899999999999999999999999886311 23467888887543222 22
Q ss_pred HHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-
Q 024529 138 PLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI- 214 (266)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~- 214 (266)
+...+... ......+-+.++++-+.+. +..++.+.+|||||.||+++|.+|=..+++++.|||.+.||.+.+...-
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 22211111 1123345567778877775 5677889999999999999999999999999999999999998765433
Q ss_pred ---HHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 215 ---QGLVLFQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 215 ---~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
+.+...+.|-.+|.||.-.+.-.+||+++.+.
T Consensus 498 vikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 498 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 33344467889999999888888999999864
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.83 E-value=3e-20 Score=156.87 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=99.5
Q ss_pred CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEE-EeccccCCCCCCCcHHHHHHHhC
Q 024529 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAV-FSQHHVDGLDLSSNPLLYMMRCF 146 (266)
Q Consensus 68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~-~~q~~~~~~~~~~~~~~~~~~~~ 146 (266)
...+.+|++|+++.|++++|+||||+|||||+++++++.-- ..+|+ +|-. .....
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l----------a~~G~~vpa~-----~~~l~--------- 70 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM----------AQIGCFVPAE-----YATLP--------- 70 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH----------HHcCCCcchh-----hcCcc---------
Confidence 34688999999999999999999999999999999886310 00111 0100 00000
Q ss_pred CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHhhcCC
Q 024529 147 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV----EALIQGLVLFQG 222 (266)
Q Consensus 147 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~----~~l~~~l~~~~~ 222 (266)
....++..++..+. ..+..+++|+|++|+ ..+.+++.+|+++|||||++|+|+... ..+++.+.+.+.
T Consensus 71 ------~~d~I~~~~~~~d~-~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~ 142 (204)
T cd03282 71 ------IFNRLLSRLSNDDS-MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKES 142 (204)
T ss_pred ------ChhheeEecCCccc-cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 11223445555433 346778999999975 455668899999999999999999653 345666666678
Q ss_pred EEEEEecCHHHHHhhcC
Q 024529 223 GILMVSHDEHLISGSVE 239 (266)
Q Consensus 223 tiiivtHd~~~~~~~~d 239 (266)
++|++||+.+++...++
T Consensus 143 ~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 143 TVFFATHFRDIAAILGN 159 (204)
T ss_pred EEEEECChHHHHHHhhc
Confidence 99999999999987653
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.82 E-value=2.7e-20 Score=156.65 Aligned_cols=134 Identities=17% Similarity=0.087 Sum_probs=77.5
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 147 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 147 (266)
+.+++|++|+. |++++|+||||||||||+|+|+|.... ..|.-. .. ..+.+|.. .+....+..+.+.....
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v-~a---~~~~~q~~--~l~~~~~~~d~l~~~~s 85 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV-CA---SSFELPPV--KIFTSIRVSDDLRDGIS 85 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE-ec---CccCcccc--eEEEeccchhccccccC
Confidence 34677776665 799999999999999999999985421 122110 00 01222210 01001111111100000
Q ss_pred --CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcC
Q 024529 148 --GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQ 221 (266)
Q Consensus 148 --~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~~~ 221 (266)
.....++.++++.++. .+|+++|+||||+++|+.....+ ++.+.+.+
T Consensus 86 ~~~~e~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~ 138 (199)
T cd03283 86 YFYAELRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKN 138 (199)
T ss_pred hHHHHHHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCC
Confidence 0001223333333321 59999999999999999876544 34444556
Q ss_pred CEEEEEecCHHHHHhh
Q 024529 222 GGILMVSHDEHLISGS 237 (266)
Q Consensus 222 ~tiiivtHd~~~~~~~ 237 (266)
.++|++||+++++...
T Consensus 139 ~tiiivTH~~~~~~~~ 154 (199)
T cd03283 139 TIGIISTHDLELADLL 154 (199)
T ss_pred CEEEEEcCcHHHHHhh
Confidence 7999999999998765
No 412
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=1.2e-19 Score=181.70 Aligned_cols=195 Identities=23% Similarity=0.336 Sum_probs=146.8
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC---CceEEEEcCe--------eeEEEEeccccCCCCCCC-
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK--------VRIAVFSQHHVDGLDLSS- 136 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~- 136 (266)
..+++|+|.-+++|+++.++||.||||||||++++|-..- ..|+|.++|. ..++|.+|+......++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3689999999999999999999999999999999997643 2468887764 357888887543222222
Q ss_pred cHHHHHHHh------CCCCcHHH-----HHHHHHhcCCCcccc----cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 137 NPLLYMMRC------FPGVPEQK-----LRAHLGSFGVTGNLA----LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 137 ~~~~~~~~~------~~~~~~~~-----~~~~l~~~~l~~~~~----~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
..+++..+. +++.++.+ ...+++.+|++.... +.-++..|||||+||.+|-+++.+++++.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 123333322 11222222 346788999974322 233567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529 202 SNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~~~----~~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 264 (266)
|.|||..+.-++++.+++. +.|++++-|.. ..+-...|.|++|.+|+++ |.|+.++.....+
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i-y~Gp~d~~~~yFe 354 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI-YQGPRDEVLPYFE 354 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE-EeccHHHHHHHHH
Confidence 9999999999999888764 45666666654 4466678999999999997 8999988776654
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.81 E-value=2.2e-19 Score=179.76 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=89.6
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 024529 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDE 231 (266)
Q Consensus 157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~ 231 (266)
.|+.+||.....++++.+|||||+|||+||++|+.+| ++|||||||+|||+.....+++.|++ .+.|||+||||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5778888643368899999999999999999999997 99999999999999999988887654 467999999999
Q ss_pred HHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529 232 HLISGSVEELWVV------SEGKATPFHGTFHDYK 260 (266)
Q Consensus 232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 260 (266)
+++. .||+|++| ++|+++ +.|+++++.
T Consensus 552 ~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~~ 584 (943)
T PRK00349 552 DTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEIM 584 (943)
T ss_pred HHHH-hCCEEEEeccccCCCCCEEe-eccCHHHHh
Confidence 9987 69999999 889986 789988874
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.7e-19 Score=154.94 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhc---C
Q 024529 172 MYTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV---E 239 (266)
Q Consensus 172 ~~~LSgGqkqRv~lAral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~---d 239 (266)
...+|+||+|+++||++|+ .+|+++||||||++||+..+..+.+.+.+.+ .+++++|+.+.+..+| +
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRA 259 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCc
Confidence 4568999999999999985 7999999999999999999999999998776 5677777777777787 7
Q ss_pred EEEEEeCCeE
Q 024529 240 ELWVVSEGKA 249 (266)
Q Consensus 240 ~i~~l~~G~i 249 (266)
+++.+++|++
T Consensus 260 ~i~~l~~g~i 269 (270)
T cd03242 260 QIFRVDAGTL 269 (270)
T ss_pred cEEEEeCcEE
Confidence 8999999986
No 415
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=2.9e-19 Score=178.59 Aligned_cols=102 Identities=26% Similarity=0.291 Sum_probs=88.4
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 024529 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDE 231 (266)
Q Consensus 157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~ 231 (266)
.+..+|+.....++++.+|||||+|||.||++|+.+| .+|||||||+|||+.....+++.|++ .+.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4667788643257899999999999999999999986 89999999999999999988887754 367999999999
Q ss_pred HHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529 232 HLISGSVEELWVV------SEGKATPFHGTFHDYK 260 (266)
Q Consensus 232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 260 (266)
+++. .||++++| ++|+++ +.|+++++.
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el~ 582 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEIL 582 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEe-eccCHHHHh
Confidence 9987 89999999 899986 788888763
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.79 E-value=2e-19 Score=153.23 Aligned_cols=141 Identities=23% Similarity=0.268 Sum_probs=91.8
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 147 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 147 (266)
..+.+|++|+..+ ++++|+||||||||||||++++..- ...|.........++++.+-
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i-------------------- 76 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRI-------------------- 76 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeE--------------------
Confidence 3578999999887 9999999999999999999987431 11222111111122222110
Q ss_pred CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH----HHHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHH
Q 024529 148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS----RVAFAKIT--FKKPHIILLDEP---SNHLDLDAV-EALIQGL 217 (266)
Q Consensus 148 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq----Rv~lAral--~~~p~lllLDEP---t~~LD~~~~-~~l~~~l 217 (266)
...++. ..++|.|+.+ +..+++++ +.+|+++||||| |+++|.... ..+++.+
T Consensus 77 ----------~~~~~~--------~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l 138 (216)
T cd03284 77 ----------FTRIGA--------SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYL 138 (216)
T ss_pred ----------eccCCc--------hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Confidence 001111 1234444443 33455555 579999999999 999998764 5677888
Q ss_pred hhc-CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 218 VLF-QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 218 ~~~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
.+. +.++|++||+.++. .++|++..+.+|++
T Consensus 139 ~~~~~~~vi~~TH~~~l~-~l~~~~~~v~~~~~ 170 (216)
T cd03284 139 HEKIGAKTLFATHYHELT-ELEGKLPRVKNFHV 170 (216)
T ss_pred HhccCCcEEEEeCcHHHH-HHhhcCCCeEEEEE
Confidence 776 78999999997654 47887666666655
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.76 E-value=7.1e-19 Score=146.41 Aligned_cols=124 Identities=21% Similarity=0.256 Sum_probs=79.5
Q ss_pred EEEEECCCCchHHHHHHHHh-CCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529 84 RIAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (266)
+++|+||||+|||||+|.++ ..+.+..|.........++++ .+++..++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~------------------------------d~il~~~~ 50 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVF------------------------------DRIFTRIG 50 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEeccc------------------------------ceEEEEeC
Confidence 36899999999999999998 333334443221111111111 11233444
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCCEEEEEecCHHHHHhh
Q 024529 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVL-FQGGILMVSHDEHLISGS 237 (266)
Q Consensus 163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~-~~~tiiivtHd~~~~~~~ 237 (266)
..+. ..+..+++|+|++|...++. .+.+|+++|+|||++|+|+.....+ ++.+.+ .+.++|++||+.+. .++
T Consensus 51 ~~d~-~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l-~~~ 127 (185)
T smart00534 51 ASDS-LAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL-TKL 127 (185)
T ss_pred CCCc-hhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH-HHH
Confidence 4433 34567899998887433333 2459999999999999999865554 344444 36789999999975 457
Q ss_pred cCE
Q 024529 238 VEE 240 (266)
Q Consensus 238 ~d~ 240 (266)
|++
T Consensus 128 ~~~ 130 (185)
T smart00534 128 ADE 130 (185)
T ss_pred hhc
Confidence 764
No 418
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.75 E-value=1.8e-17 Score=140.91 Aligned_cols=128 Identities=21% Similarity=0.195 Sum_probs=89.6
Q ss_pred eEEEeCC--cEEEEECCCCchHHHHHHHHhC--CCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcH
Q 024529 76 NFGIDLD--SRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE 151 (266)
Q Consensus 76 sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (266)
++.+..+ .+++|+||||+|||||||.|+. .+ +..|.........++|+.|... .+....+.
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~-~l~~~~si------------- 85 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFT-RMSSRESV------------- 85 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeee-eeCCccCh-------------
Confidence 4444444 7899999999999999999984 33 5677776666667777776531 11111100
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCC--hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH----HHHHHHhhcC---C
Q 024529 152 QKLRAHLGSFGVTGNLALQPMYTLS--GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE----ALIQGLVLFQ---G 222 (266)
Q Consensus 152 ~~~~~~l~~~~l~~~~~~~~~~~LS--gGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~----~l~~~l~~~~---~ 222 (266)
...+| .-+.||++++++++.+|.++|||||++|+|+.... .+++.+.+.+ .
T Consensus 86 --------------------~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~ 145 (213)
T cd03281 86 --------------------SSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECP 145 (213)
T ss_pred --------------------hhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 01112 35779999999999999999999999999986432 3444454432 3
Q ss_pred EEEEEecCHHHHHhhc
Q 024529 223 GILMVSHDEHLISGSV 238 (266)
Q Consensus 223 tiiivtHd~~~~~~~~ 238 (266)
++|++||+.+++....
T Consensus 146 ~vli~TH~~~l~~~~~ 161 (213)
T cd03281 146 RVIVSTHFHELFNRSL 161 (213)
T ss_pred EEEEEcChHHHHHhhh
Confidence 7999999999987653
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.72 E-value=1.9e-17 Score=163.73 Aligned_cols=148 Identities=24% Similarity=0.310 Sum_probs=98.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCC-cEEEEECCCCchHHHHHHHHhCC-CCCCceE-EEEcCeeeEEEEeccccCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLIAGE-LQPSSGT-VFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~-i~~~~~~~i~~~~q~~~~~ 131 (266)
.+.++++..-+-... -+-.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|. |.......++|+.|.
T Consensus 295 ~i~l~~~rhPll~~~-~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i---- 369 (771)
T TIGR01069 295 KIILENARHPLLKEP-KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI---- 369 (771)
T ss_pred CEEEccccCceecCC-ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe----
Confidence 577777654221111 123479999887 89999999999999999999997 4555552 111100111111110
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 024529 132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211 (266)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~ 211 (266)
+ ..++.... .....+++|+|+++++.+++++ .+|+++|||||++|+|+....
T Consensus 370 --------------~------------~~i~~~~s-i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 370 --------------F------------ADIGDEQS-IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------------e------------eecChHhH-HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 01111111 1234678999999999998876 789999999999999998766
Q ss_pred HH----HHHHhhcCCEEEEEecCHHHHH
Q 024529 212 AL----IQGLVLFQGGILMVSHDEHLIS 235 (266)
Q Consensus 212 ~l----~~~l~~~~~tiiivtHd~~~~~ 235 (266)
.+ ++.+.+.+.++|++||+.++..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 55 4445555778999999988754
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.71 E-value=6.6e-17 Score=137.81 Aligned_cols=164 Identities=24% Similarity=0.303 Sum_probs=96.8
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHh-CCC--CCCc-------eEEEE-c-----CeeeEEEEeccccCCCCCCC
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GEL--QPSS-------GTVFR-S-----AKVRIAVFSQHHVDGLDLSS 136 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~--~p~~-------G~i~~-~-----~~~~i~~~~q~~~~~~~~~~ 136 (266)
+...+.+.+ .+++|+|||||||||++.+|. .+- ...+ .-|.. . ....+...++..........
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 455666654 599999999999999999993 222 1111 11111 0 01223333222111100000
Q ss_pred cHH------HH-----HHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCC
Q 024529 137 NPL------LY-----MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEP 201 (266)
Q Consensus 137 ~~~------~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEP 201 (266)
... .. ............+.+.+....+... .||||||.+++||-.|+ .+.+++|||||
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv 167 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEV 167 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEEST
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccc
Confidence 000 00 0000001234566677777666432 89999999999997663 57899999999
Q ss_pred CCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcCEEEEEe
Q 024529 202 SNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVS 245 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~~~~~d~i~~l~ 245 (266)
.++||...+..+.+.|.+.. .-+|++||+..+.. .||+.+.+.
T Consensus 168 d~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v~ 212 (220)
T PF02463_consen 168 DAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGVT 212 (220)
T ss_dssp TTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 99999999999999998875 57999999998877 578887653
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.70 E-value=7.5e-16 Score=140.85 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhc--CE
Q 024529 172 MYTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV--EE 240 (266)
Q Consensus 172 ~~~LSgGqkqRv~lAral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~--d~ 240 (266)
...+|.||+++++||++|+ .+|+|||||||+++||+..+..+.+.+.+.+..++++||+.+.+...+ ++
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~ 350 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAK 350 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCc
Confidence 3579999999999999986 799999999999999999999999999876668999999988877664 57
Q ss_pred EEEEeCCeE
Q 024529 241 LWVVSEGKA 249 (266)
Q Consensus 241 i~~l~~G~i 249 (266)
++.+++|++
T Consensus 351 i~~v~~G~i 359 (361)
T PRK00064 351 IFHVEQGKI 359 (361)
T ss_pred EEEEeCCEE
Confidence 999999986
No 422
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.69 E-value=6.8e-16 Score=135.33 Aligned_cols=143 Identities=24% Similarity=0.340 Sum_probs=86.9
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (266)
.-++|+||||||||||+++|+|++.|++|+|.++++. +..+ . ....+........+..+ +
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~-v~~~----------d--~~~ei~~~~~~~~q~~~-------~ 171 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKK-VGIV----------D--ERSEIAGCVNGVPQHDV-------G 171 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEE-eecc----------h--hHHHHHHHhcccccccc-------c
Confidence 5689999999999999999999999999999877642 1100 0 00011111111111100 0
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH--H------
Q 024529 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL--I------ 234 (266)
Q Consensus 163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~--~------ 234 (266)
....-|.+=.|.......+.+.+|+++|+|||++. +....+++.+. .+.++|++||+.+. +
T Consensus 172 -------~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~ 240 (270)
T TIGR02858 172 -------IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDVEDLYKRPVF 240 (270)
T ss_pred -------ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHHHHHHhChHH
Confidence 01111222222222333444479999999999853 33455555554 47799999998766 4
Q ss_pred -----HhhcCEEEEEeCCeEEecCCChhHH
Q 024529 235 -----SGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 235 -----~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
..+++|+++|++|+ ..|+++++
T Consensus 241 ~~l~~~~~~~r~i~L~~~~---~~g~~~~i 267 (270)
T TIGR02858 241 KELIENEAFERYVVLSRRK---GPGTVEAV 267 (270)
T ss_pred HHHHhcCceEEEEEEecCC---CCCceeec
Confidence 25689999999875 35655443
No 423
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=4.5e-16 Score=132.94 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=91.2
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC-CCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 147 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 147 (266)
..+.+|++|.+.+|++++|+||||+||||+++++++ .+.+..|...+.....++++.|-..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~------------------ 79 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLT------------------ 79 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEE------------------
Confidence 457899999999999999999999999999999999 6788888876655555555443211
Q ss_pred CCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHHHHHHHHccCCCEEEEeCCCCCCCHH---H-HHHHHHHHhhc-
Q 024529 148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRVAFAKITFKKPHIILLDEPSNHLDLD---A-VEALIQGLVLF- 220 (266)
Q Consensus 148 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--GqkqRv~lAral~~~p~lllLDEPt~~LD~~---~-~~~l~~~l~~~- 220 (266)
.++-.+.. ...+|- .|-+++.-+.-.+.+|.++|||||.+|.|+. + ...+++.+.+.
T Consensus 80 ------------~~~~~d~~----~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~ 143 (222)
T cd03287 80 ------------RMGASDSI----QHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEK 143 (222)
T ss_pred ------------EecCcccc----ccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhcc
Confidence 01100000 011221 2334443333446789999999997777653 3 23566777766
Q ss_pred CCEEEEEecCHHHHH
Q 024529 221 QGGILMVSHDEHLIS 235 (266)
Q Consensus 221 ~~tiiivtHd~~~~~ 235 (266)
+.++|++||+.++..
T Consensus 144 ~~~~i~~TH~~~l~~ 158 (222)
T cd03287 144 KCLVLFVTHYPSLGE 158 (222)
T ss_pred CCeEEEEcccHHHHH
Confidence 668999999999865
No 424
>PRK13695 putative NTPase; Provisional
Probab=99.65 E-value=7.1e-17 Score=132.93 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=100.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 163 (266)
.++|+|+||||||||++.|++.+.+ .|. . ..+|+.|+.... .....+. +.....+ ....+...+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~-----~~g~~~~~~~~~--~~~~~~~-~~~~~~~-----~~~~l~~~~~ 66 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-K-----VGGFYTEEVREG--GKRIGFK-IIDLDTG-----EEGILARVGF 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCC-e-----EEEEEcHHHHhc--CCccceE-EEEcCCC-----CeEEccccCC
Confidence 5899999999999999999886654 342 1 234555432110 0000000 0000000 0112233333
Q ss_pred -CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCE
Q 024529 164 -TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE--PSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240 (266)
Q Consensus 164 -~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~ 240 (266)
......+....+||+++-+..+++..+.+|+++++|| |+.++|....+.+.+.+ +.+.++|+|+|+. .+..++|+
T Consensus 67 ~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~ 144 (174)
T PRK13695 67 PSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQE 144 (174)
T ss_pred CCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHH
Confidence 2222234556899999999999999999999999999 77788877766666666 6788999999995 55568999
Q ss_pred EEEEeCCeEEec
Q 024529 241 LWVVSEGKATPF 252 (266)
Q Consensus 241 i~~l~~G~i~~~ 252 (266)
+..+.+|++...
T Consensus 145 i~~~~~~~i~~~ 156 (174)
T PRK13695 145 IKSRPGGRVYEL 156 (174)
T ss_pred HhccCCcEEEEE
Confidence 999999998644
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.59 E-value=1.2e-15 Score=137.92 Aligned_cols=165 Identities=24% Similarity=0.317 Sum_probs=111.0
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC--eeeEEEEe----cc----cc-CCCCCC--CcHHHHHHHhC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--KVRIAVFS----QH----HV-DGLDLS--SNPLLYMMRCF 146 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~~i~~~~----q~----~~-~~~~~~--~~~~~~~~~~~ 146 (266)
.+|++.+++|-||.||||-+++++|-.+|.-|.--... ...++|+. |+ .. +.+... ....+.+.+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999999877542111 11122221 11 00 000000 00011111100
Q ss_pred C---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529 147 P---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217 (266)
Q Consensus 147 ~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l 217 (266)
. ....+...++++.+.+. ...++.+..|||||.||.+||.+.++++++.++|||.+.||...+......+
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI 256 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence 0 01112344556666665 3566788999999999999999999999999999999999998766544444
Q ss_pred hh---cCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529 218 VL---FQGGILMVSHDEHLISGSVEELWVVS 245 (266)
Q Consensus 218 ~~---~~~tiiivtHd~~~~~~~~d~i~~l~ 245 (266)
+. -..-||+|.||++.+.-..|-+.++-
T Consensus 257 Rsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 257 RSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred HHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 43 34569999999999998889888875
No 426
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.59 E-value=2.2e-15 Score=149.37 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=91.7
Q ss_pred eceEEEeC-CcEEEEECCCCchHHHHHHHHhCC-CCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcH
Q 024529 74 NLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE 151 (266)
Q Consensus 74 ~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (266)
..++.+.. +.++.|+|||++||||+||.++.. +-+..|. ++|-.....+ ..+
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~----------~vpa~~~~~i----~~~------------ 371 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL----------PIPANEPSEI----PVF------------ 371 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC----------CcccCCCccc----ccc------------
Confidence 44555643 467999999999999999999643 1112220 1111100000 000
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCEEEEE
Q 024529 152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQGGILMV 227 (266)
Q Consensus 152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~~~~tiiiv 227 (266)
..++..+|-.+. ..+..+++|+||++++.|++++ .+|.++|||||++|+|+.....+ ++.+.+.+.++|++
T Consensus 372 ---~~i~~~ig~~~s-i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit 446 (782)
T PRK00409 372 ---KEIFADIGDEQS-IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT 446 (782)
T ss_pred ---ceEEEecCCccc-hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 011112333222 2356689999999999999988 89999999999999999865554 44455557799999
Q ss_pred ecCHHHHHhhcCEEEEE
Q 024529 228 SHDEHLISGSVEELWVV 244 (266)
Q Consensus 228 tHd~~~~~~~~d~i~~l 244 (266)
||+.++....+++..++
T Consensus 447 TH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 447 THYKELKALMYNREGVE 463 (782)
T ss_pred CChHHHHHHHhcCCCeE
Confidence 99999888766655443
No 427
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.54 E-value=3.8e-14 Score=122.96 Aligned_cols=161 Identities=15% Similarity=0.135 Sum_probs=102.1
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC--------------CCCCCcHHHH
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG--------------LDLSSNPLLY 141 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~--------------~~~~~~~~~~ 141 (266)
=+.+..|++++|+||+|+|||||++.|++......+.+. .+.++.++.... -.........
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~-----~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY-----LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE-----EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 357889999999999999999999999998776533222 111211111000 0000011110
Q ss_pred HHHh-----------CCCC-------cHHHHHHHHHhcCCCcccccCCCCCCChHH--------HHHHHHHHHHccCCCE
Q 024529 142 MMRC-----------FPGV-------PEQKLRAHLGSFGVTGNLALQPMYTLSGGQ--------KSRVAFAKITFKKPHI 195 (266)
Q Consensus 142 ~~~~-----------~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--------kqRv~lAral~~~p~l 195 (266)
.... ..+. +-.+.......+. ......+|||+ +||+++||++..+++|
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~------~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVV------PPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhcc------ccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 0000 0000 0111111122111 12345689999 9999999999999999
Q ss_pred EEEeCCCCCCCHHHH-H-HHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 196 ILLDEPSNHLDLDAV-E-ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 196 llLDEPt~~LD~~~~-~-~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
++| ||+.+|..+. . -+.+.++....|.|++||++.... ..|.|.+|+.|++.
T Consensus 159 t~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr~ 212 (249)
T cd01128 159 TII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTRK 212 (249)
T ss_pred EEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCcc
Confidence 999 9999996432 2 345666655679999999999876 68999999999974
No 428
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=3.1e-14 Score=146.20 Aligned_cols=80 Identities=21% Similarity=0.181 Sum_probs=71.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHH
Q 024529 168 ALQPMYTLSGGQKSRVAFAKITFK----------KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLI 234 (266)
Q Consensus 168 ~~~~~~~LSgGqkqRv~lAral~~----------~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~ 234 (266)
..+++.+|||||++||+||+||+. +|++|||||||++||+.+...+++.|.. .+.+|+||||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 456889999999999999999985 7999999999999999998888777754 456899999999999
Q ss_pred HhhcCEEEEEeCC
Q 024529 235 SGSVEELWVVSEG 247 (266)
Q Consensus 235 ~~~~d~i~~l~~G 247 (266)
..+||+|+|++.+
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999754
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.52 E-value=3.5e-14 Score=136.95 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 173 YTLSGGQKSRVAFAKITFKK----PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 173 ~~LSgGqkqRv~lAral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
..|||||+||++||++++.. |++|||||||+|||+.+...+.+.|.+. +.+||+|||++..+. +||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 46899999999999999875 6999999999999999999888887764 568999999999886 8999999986
Q ss_pred C
Q 024529 247 G 247 (266)
Q Consensus 247 G 247 (266)
|
T Consensus 518 ~ 518 (563)
T TIGR00634 518 E 518 (563)
T ss_pred c
Confidence 4
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.52 E-value=3.6e-14 Score=136.87 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=68.2
Q ss_pred CCCCCChHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHHHhhc
Q 024529 171 PMYTLSGGQKSRVAFAKITF----------KKPHIILLDEPS-NHLDLDAVEALIQGLVLF-QGGILMVSHDEHLISGSV 238 (266)
Q Consensus 171 ~~~~LSgGqkqRv~lAral~----------~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~-~~tiiivtHd~~~~~~~~ 238 (266)
++.+|||||+||++||++|+ .+|++||||||| ++||+.+...+.+.|.+. +.+||+|||+.+... .|
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~-~~ 543 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQ-KF 543 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchh-hh
Confidence 56899999999999999987 599999999998 789999999999988876 458999999987765 68
Q ss_pred CEEEEEeC-CeE
Q 024529 239 EELWVVSE-GKA 249 (266)
Q Consensus 239 d~i~~l~~-G~i 249 (266)
|++++|.+ |+.
T Consensus 544 d~~~~l~~~~~~ 555 (562)
T PHA02562 544 DRHLKMEKVGRF 555 (562)
T ss_pred hcEEEEEEECCe
Confidence 99999986 554
No 431
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=9e-14 Score=118.46 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=85.1
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 147 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 147 (266)
..+-+|++|+.++|++++|+||||+|||||++++++..-. ..|.-.......++++.
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~---------------------- 74 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVD---------------------- 74 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEecccc----------------------
Confidence 4678999999999999999999999999999999875321 11210000000011000
Q ss_pred CCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhc-
Q 024529 148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLF- 220 (266)
Q Consensus 148 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~~- 220 (266)
.++..++-.+.. ...+|. .|.+++.-....+.+|.++|||||++|+|+.....+ ++.|.+.
T Consensus 75 --------~i~~~~~~~d~~----~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~ 142 (218)
T cd03286 75 --------RIFTRIGARDDI----MKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKV 142 (218)
T ss_pred --------EEEEecCccccc----ccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhc
Confidence 001111111111 112222 345555444445678999999999999998764433 4555554
Q ss_pred CCEEEEEecCHHHHHhhc
Q 024529 221 QGGILMVSHDEHLISGSV 238 (266)
Q Consensus 221 ~~tiiivtHd~~~~~~~~ 238 (266)
+.++|++||+.+++...+
T Consensus 143 ~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 143 KCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCcEEEEeccHHHHHHhh
Confidence 678999999999988765
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.50 E-value=7.1e-14 Score=120.23 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=89.8
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHH-HHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI-LKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (266)
+.++++.+.++++ +++|+++.|+|+|||||||| +++++++.++....+ |+..+. +.
T Consensus 8 ~~~~~ld~~l~gg----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~---------yi~~e~----~~ 64 (230)
T PRK08533 8 LSRDELHKRLGGG----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVS---------YVSTQL----TT 64 (230)
T ss_pred EEEeeeehhhCCC----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEE---------EEeCCC----CH
Confidence 4566666666432 68999999999999999999 799998766533322 222110 00
Q ss_pred CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCC----C
Q 024529 135 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHL----D 206 (266)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~----~p~lllLDEPt~~L----D 206 (266)
......+.. . +.+.+ +.... +.-.. .+.. ..+|+++.++-.+.+.+.. +|+++++||||+++ |
T Consensus 65 -~~~~~~~~~-~-g~~~~---~~~~~-~~l~~-~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d 135 (230)
T PRK08533 65 -TEFIKQMMS-L-GYDIN---KKLIS-GKLLY-IPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS 135 (230)
T ss_pred -HHHHHHHHH-h-CCchH---HHhhc-CcEEE-EEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc
Confidence 011111111 1 11111 11111 10000 1111 2467776666555554433 69999999999999 7
Q ss_pred HHHHHHHHHHHhh---cCCEEEEEecCHHHH--------HhhcCEEEEEe
Q 024529 207 LDAVEALIQGLVL---FQGGILMVSHDEHLI--------SGSVEELWVVS 245 (266)
Q Consensus 207 ~~~~~~l~~~l~~---~~~tiiivtHd~~~~--------~~~~d~i~~l~ 245 (266)
+.....+.+.++. .+. ++++||+.... ..+||-|+.|+
T Consensus 136 ~~~~~~l~~~l~~l~~~g~-tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 136 EVAVNDLMAFFKRISSLNK-VIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hHHHHHHHHHHHHHHhCCC-EEEEEecccccccccceeEEEeeeEEEEEE
Confidence 7777777776653 344 44556665432 34568888776
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.47 E-value=1.8e-13 Score=131.45 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529 174 TLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEG 247 (266)
Q Consensus 174 ~LSgGqkqRv~lAral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G 247 (266)
.|||||+||++||++++. +|+++|||||++|||..+...+.+.+++. +.+||+|||++..+ .+||+++.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 489999999999999996 68999999999999999999988888765 36899999999877 589999999763
No 434
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.47 E-value=8.4e-13 Score=122.92 Aligned_cols=161 Identities=14% Similarity=0.226 Sum_probs=94.5
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeee-------------------EEEEecccc
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR-------------------IAVFSQHHV 129 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~-------------------i~~~~q~~~ 129 (266)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|...|... +.++.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~-- 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS-- 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC--
Confidence 4578999 99999999999999999999999999999999999876432110 1111100
Q ss_pred CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCCh-HHHHHHHHHHHHccCCCEEEEeCC--CCCCC
Q 024529 130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG-GQKSRVAFAKITFKKPHIILLDEP--SNHLD 206 (266)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-GqkqRv~lAral~~~p~lllLDEP--t~~LD 206 (266)
...+...+...+ .--.+.+++..-|-+- + --..+|+- -|-+| .|+ +.+.|| |+|+|
T Consensus 223 -----~~~~~~r~~~~~---~a~~iAEyfr~~g~~V-l--l~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G~d 281 (438)
T PRK07721 223 -----DQPALMRIKGAY---TATAIAEYFRDQGLNV-M--LMMDSVTRVAMAQR-EIG---------LAVGEPPTTKGYT 281 (438)
T ss_pred -----CCCHHHHHHHHH---HHHHHHHHHHHCCCcE-E--EEEeChHHHHHHHH-HHH---------HhcCCCCccccCC
Confidence 000111000000 0011112221112110 0 01122221 11111 000 112365 78999
Q ss_pred HHHHHHHHHHHhhcC----C------EEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529 207 LDAVEALIQGLVLFQ----G------GILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 256 (266)
Q Consensus 207 ~~~~~~l~~~l~~~~----~------tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 256 (266)
+.....+.+.+.+.+ + ||++.+||++. .+||++..+.+|+++ ..+..
T Consensus 282 p~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Iv-ls~~l 338 (438)
T PRK07721 282 PSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFV-LDRQL 338 (438)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEE-EeccH
Confidence 998887777665432 3 79999999985 789999999999996 45543
No 435
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.46 E-value=8.2e-13 Score=122.28 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=110.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (266)
.++-+.++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.|...+ +..
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iG--------erg------ 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVG--------ERG------ 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCC--------CCc------
Confidence 467777887786555677775 99999999999999999999999999999999888664321 111
Q ss_pred CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCH
Q 024529 135 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-------KKPHIILLDEPSNHLDL 207 (266)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~-------~~p~lllLDEPt~~LD~ 207 (266)
.+..+++ ...+..-++.....-....+.|.|+|.|++.+.+.+ .++-++++|+||++.|+
T Consensus 195 -~ev~e~~------------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A 261 (432)
T PRK06793 195 -REVKDFI------------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA 261 (432)
T ss_pred -ccHHHHH------------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH
Confidence 1111211 111222222211111345789999999999999887 78999999999999999
Q ss_pred HHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 208 DAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 208 ~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
. .++-..+.+. +.+..+.||-..++++.+ ....|.+.
T Consensus 262 ~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag----~~~~GSiT 301 (432)
T PRK06793 262 R--RSVDIAVKELPIGGKTLLMESYMKKLLERSG----KTQKGSIT 301 (432)
T ss_pred H--HHHHHHhcCCCCCCeeeeeeccchhHHHHhc----cCCCcceE
Confidence 6 4443344332 346777788655555533 24677764
No 436
>PRK01156 chromosome segregation protein; Provisional
Probab=99.45 E-value=6e-13 Score=134.95 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=65.0
Q ss_pred CCCCCCChHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcC--CEEEEEecCHHHHHhh
Q 024529 170 QPMYTLSGGQKSRVAF------AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQ--GGILMVSHDEHLISGS 237 (266)
Q Consensus 170 ~~~~~LSgGqkqRv~l------Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~----~~~--~tiiivtHd~~~~~~~ 237 (266)
.++..|||||++|++| |++++.+|++++|||||++||+.....+.+.+. ..+ .+||+||||.+++. +
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~-~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLS-V 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHH-h
Confidence 4678999999999975 589999999999999999999999888877664 222 37999999999885 8
Q ss_pred cCEEEEEe
Q 024529 238 VEELWVVS 245 (266)
Q Consensus 238 ~d~i~~l~ 245 (266)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 437
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=9e-13 Score=111.89 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=43.1
Q ss_pred CCCCChH--HHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHhhc
Q 024529 172 MYTLSGG--QKSRVAFAKITFKKPHIILLDEPS-----NHLDLDAVEALIQGLVLF 220 (266)
Q Consensus 172 ~~~LSgG--qkqRv~lAral~~~p~lllLDEPt-----~~LD~~~~~~l~~~l~~~ 220 (266)
.+..||+ |++++.||++++.+|+++++|||| ++||+..++.+.+.+.+.
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 3445555 999999999999999999999999 999999999999888764
No 438
>PRK03918 chromosome segregation protein; Provisional
Probab=99.44 E-value=3.3e-13 Score=136.53 Aligned_cols=76 Identities=29% Similarity=0.447 Sum_probs=65.3
Q ss_pred cCCCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcC
Q 024529 169 LQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 169 ~~~~~~LSgGqkq------Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d 239 (266)
+.++..|||||++ |++||++++.+|+++||||||++||+.++..+.+.|..+ +.+||+||||.++. .+||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCC
Confidence 3577899999999 555666888999999999999999999999888877653 45899999999865 5899
Q ss_pred EEEEEe
Q 024529 240 ELWVVS 245 (266)
Q Consensus 240 ~i~~l~ 245 (266)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.42 E-value=1.7e-13 Score=116.74 Aligned_cols=64 Identities=27% Similarity=0.482 Sum_probs=51.2
Q ss_pred CCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHH
Q 024529 171 PMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLI 234 (266)
Q Consensus 171 ~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~ 234 (266)
+...+|.|+++.+.|+.++...+ .++++|||-++|+|..+..+++.|... +..||++||++.++
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 35678999999999888887766 899999999999999999999988754 35799999998765
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.40 E-value=1.4e-12 Score=107.97 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=60.5
Q ss_pred ccCCCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHH---HHHHhhcCCEEEEEecCHHH--
Q 024529 168 ALQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLD---LDAVEAL---IQGLVLFQGGILMVSHDEHL-- 233 (266)
Q Consensus 168 ~~~~~~~LSgGqkq------Rv~lAral~~~p~lllLDEPt~~LD---~~~~~~l---~~~l~~~~~tiiivtHd~~~-- 233 (266)
.+.++..+|+|++| ....+.+...+|+++++|||++.+| ......+ +..+++.+.|+|+++|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 45667889999998 5555555678999999999999999 5554444 44555567899999998765
Q ss_pred -------HHhhcCEEEEEe
Q 024529 234 -------ISGSVEELWVVS 245 (266)
Q Consensus 234 -------~~~~~d~i~~l~ 245 (266)
+..+||.++.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 677899999886
No 441
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=6.8e-13 Score=138.98 Aligned_cols=75 Identities=32% Similarity=0.424 Sum_probs=64.2
Q ss_pred CCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCEEEEEecCHHHHHh
Q 024529 171 PMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--------QGGILMVSHDEHLISG 236 (266)
Q Consensus 171 ~~~~LSgGqkq------Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--------~~tiiivtHd~~~~~~ 236 (266)
..+.|||||+| |++||++++.+|++|+|||||++||+.+...+...|... +.+||+||||++++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 44789999999 999999999999999999999999999988877666442 4689999999999998
Q ss_pred hc-----CEEEEEe
Q 024529 237 SV-----EELWVVS 245 (266)
Q Consensus 237 ~~-----d~i~~l~ 245 (266)
+| +++|-+.
T Consensus 1276 ~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1276 LGRSEYVEKFYRLK 1289 (1311)
T ss_pred Hhhccccceeeeee
Confidence 75 5556553
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.38 E-value=1.7e-12 Score=133.12 Aligned_cols=78 Identities=23% Similarity=0.213 Sum_probs=70.0
Q ss_pred cCCCCCCChHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhh
Q 024529 169 LQPMYTLSGGQKSRVAFAKITFK--------KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS 237 (266)
Q Consensus 169 ~~~~~~LSgGqkqRv~lAral~~--------~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~ 237 (266)
.+++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|.. .+.+|+||||..++..++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 47889999999999999999995 8999999999999999999888877654 467999999999999999
Q ss_pred cCEEEEEeC
Q 024529 238 VEELWVVSE 246 (266)
Q Consensus 238 ~d~i~~l~~ 246 (266)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 999888865
No 443
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.36 E-value=2.3e-11 Score=99.46 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=61.1
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 170 ~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
+.....|.||----.+.+.+ .+.-++|||||-++|.|.-+-+++..|.+ .+..+||+||.+=++.----+|+.++.
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~ 203 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISE 203 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEec
Confidence 34567899998665555554 46789999999999999887777766654 466799999999776644568888988
Q ss_pred CeE
Q 024529 247 GKA 249 (266)
Q Consensus 247 G~i 249 (266)
+.+
T Consensus 204 ~g~ 206 (233)
T COG3910 204 SGI 206 (233)
T ss_pred CCc
Confidence 766
No 444
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.35 E-value=8.1e-12 Score=120.78 Aligned_cols=103 Identities=26% Similarity=0.297 Sum_probs=85.8
Q ss_pred HHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHH
Q 024529 158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEH 232 (266)
Q Consensus 158 l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~--p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~ 232 (266)
|-.+||...-.++...+|||||.||+-||.-+=++ -=+++||||+-||-+..-+.+++.|+ +.+.|+|+|.||.+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 44567776557788999999999999999999765 34889999999999988888777664 56789999999999
Q ss_pred HHHhhcCEEEEEe------CCeEEecCCChhHHHHH
Q 024529 233 LISGSVEELWVVS------EGKATPFHGTFHDYKKM 262 (266)
Q Consensus 233 ~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~~ 262 (266)
.+. .||+|+-|- .|+|+ +.|+++++.+.
T Consensus 545 ti~-~AD~iIDiGPgAG~~GGeIv-~~Gtp~~i~~~ 578 (935)
T COG0178 545 TIR-AADHIIDIGPGAGEHGGEIV-AEGTPEELLAN 578 (935)
T ss_pred HHh-hcCEEEeeCCCCCcCCCEEE-EccCHHHHHhC
Confidence 987 599999883 56775 89999998754
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.34 E-value=2.3e-12 Score=133.45 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=65.9
Q ss_pred cCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEE
Q 024529 169 LQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW 242 (266)
Q Consensus 169 ~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~ 242 (266)
+.++..|||||++|++||++++ .+|+++||||||++||+.+...+.+.+... +.+||||||++.++. +||+++
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~-~~d~~~ 1162 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTME-VADQLY 1162 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHH-HhhhHe
Confidence 4567899999999999999984 678999999999999999999988888664 358999999999875 799997
Q ss_pred EEe
Q 024529 243 VVS 245 (266)
Q Consensus 243 ~l~ 245 (266)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 653
No 446
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.27 E-value=9.6e-12 Score=93.80 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=39.2
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~ 118 (266)
..+|++++|++++|++++|+||||||||||++++. +|++.+.+.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~ 45 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGD 45 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeE
Confidence 35899999999999999999999999999999986 788876653
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.27 E-value=9.3e-12 Score=111.60 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=89.4
Q ss_pred ceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHH
Q 024529 75 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 154 (266)
Q Consensus 75 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (266)
+++.+..|+.++|+||+|||||||+++|++++++..|.+.+.. .. .+.... +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied----------~~-El~~~~----------~~------ 189 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED----------TR-EIFLPH----------PN------ 189 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC----------cc-ccCCCC----------CC------
Confidence 5577889999999999999999999999999998887654321 10 011110 00
Q ss_pred HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHH
Q 024529 155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-GILMVSHDEHL 233 (266)
Q Consensus 155 ~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tiiivtHd~~~ 233 (266)
.+.+............|- .-.++.+|..+|+++++|||.+ .+ ...+++.+. .+. +++.++|..+.
T Consensus 190 -----~~~l~~~~~~~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~---~e-~~~~l~a~~-~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 190 -----YVHLFYSKGGQGLAKVTP----KDLLQSCLRMRPDRIILGELRG---DE-AFDFIRAVN-TGHPGSITTLHAGSP 255 (308)
T ss_pred -----EEEEEecCCCCCcCccCH----HHHHHHHhcCCCCeEEEeccCC---HH-HHHHHHHHh-cCCCeEEEEEeCCCH
Confidence 000000000000111222 2257778899999999999996 22 233444444 343 57999999985
Q ss_pred HHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 234 ISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 234 ~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.. ..+|+..|..|++. ..|...++.
T Consensus 256 ~~-~~~Rl~~l~~~~~~-~~g~~~~~~ 280 (308)
T TIGR02788 256 EE-AFEQLALMVKSSQA-GLGLDFAYI 280 (308)
T ss_pred HH-HHHHHHHHhhcccc-ccCCCHHHH
Confidence 54 58999888888775 345555443
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.24 E-value=1.4e-10 Score=116.43 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=51.3
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHh---hcCCEEEEEecCHHHHH---------hhcCEEEEEeCCeEE
Q 024529 190 FKKPHIILLDEPSNHL-DLDAVEALIQGLV---LFQGGILMVSHDEHLIS---------GSVEELWVVSEGKAT 250 (266)
Q Consensus 190 ~~~p~lllLDEPt~~L-D~~~~~~l~~~l~---~~~~tiiivtHd~~~~~---------~~~d~i~~l~~G~i~ 250 (266)
..+|.++++|||+.+| |+...+.+.+.++ +.++++|++||+++.+. ..|+..++|.+|++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~ 723 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR 723 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence 5799999999999999 6887777766654 45779999999999875 479999999999874
No 449
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.24 E-value=2e-11 Score=126.64 Aligned_cols=76 Identities=24% Similarity=0.190 Sum_probs=66.3
Q ss_pred CCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEE
Q 024529 170 QPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWV 243 (266)
Q Consensus 170 ~~~~~LSgGqkqRv~lAral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~ 243 (266)
+++..||||||++++||++|+. +|+++|||||+++||+..+..+.+.|... +..+|+|||+...+ .+||+++.
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~~ 1148 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAIG 1148 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeEe
Confidence 4567899999999999999984 78999999999999999999999988765 35799999999876 58999987
Q ss_pred EeC
Q 024529 244 VSE 246 (266)
Q Consensus 244 l~~ 246 (266)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 753
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.23 E-value=3.6e-11 Score=96.30 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=74.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 163 (266)
+++|.||||+|||||++.+++...+..|.+. |+..+.. ........... ......+.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~--------~~~~e~~------~~~~~~~~~~~------~~~~~~~~~~- 59 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVV--------YVDIEEE------IEELTERLIGE------SLKGALDNLI- 59 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEE--------EEECCcc------hHHHHHHHhhh------hhccccccEE-
Confidence 4789999999999999999998766555543 3332211 01111000000 0000011111
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC----------CHHHHHHHH---HHHhhcCCEEEEEecC
Q 024529 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL----------DLDAVEALI---QGLVLFQGGILMVSHD 230 (266)
Q Consensus 164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L----------D~~~~~~l~---~~l~~~~~tiiivtHd 230 (266)
.........+.++.++++.+++...+|+++++|||++-+ |......+. +.+++.+.++|+++|.
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 136 (165)
T cd01120 60 ---IVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV 136 (165)
T ss_pred ---EEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 111122345566677888999999999999999999554 333334333 3334456799999997
Q ss_pred HHHH
Q 024529 231 EHLI 234 (266)
Q Consensus 231 ~~~~ 234 (266)
....
T Consensus 137 ~~~~ 140 (165)
T cd01120 137 PSGD 140 (165)
T ss_pred CCcc
Confidence 7544
No 451
>PRK02224 chromosome segregation protein; Provisional
Probab=99.20 E-value=3.9e-11 Score=121.64 Aligned_cols=76 Identities=30% Similarity=0.475 Sum_probs=64.2
Q ss_pred CCCCCChHHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHhhc---CC-EEEEEecCHHHH
Q 024529 171 PMYTLSGGQKS------RVAFAKITFKK-----P-HIILLDEPSNHLDLDAVEALIQGLVLF---QG-GILMVSHDEHLI 234 (266)
Q Consensus 171 ~~~~LSgGqkq------Rv~lAral~~~-----p-~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-tiiivtHd~~~~ 234 (266)
++..|||||++ |+++|++++.+ | +++||||||++||+..+..+.+.|... +. +||+||||.+++
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 89999998863 2 679999999999999988888776553 33 799999999998
Q ss_pred HhhcCEEEEEeCC
Q 024529 235 SGSVEELWVVSEG 247 (266)
Q Consensus 235 ~~~~d~i~~l~~G 247 (266)
. .||+++.|...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 6 69999999643
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.17 E-value=1.8e-10 Score=99.15 Aligned_cols=148 Identities=17% Similarity=0.182 Sum_probs=86.5
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHh-CCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (266)
-+++|.++.|.|++|||||||...++ +..+ ..+. +.|+..+.. . ......+. .+ +.+-. +
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~--------~~y~~~e~~----~-~~~~~~~~-~~-g~~~~---~ 81 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKK--------VYVITTENT----S-KSYLKQME-SV-KIDIS---D 81 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCE--------EEEEEcCCC----H-HHHHHHHH-HC-CCChh---H
Confidence 47899999999999999999998874 3222 1222 223322110 0 01111111 11 11111 1
Q ss_pred HHH--hcCCCcccccCCCCCCChHHHHHHHHHHHHcc--CCCEEEEeCCCCC---CCHHHHHHHHHHH---hhcCCEEEE
Q 024529 157 HLG--SFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEPSNH---LDLDAVEALIQGL---VLFQGGILM 226 (266)
Q Consensus 157 ~l~--~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEPt~~---LD~~~~~~l~~~l---~~~~~tiii 226 (266)
.+. .+.+.+ ..-......|.++.+.+..+..++. +|+++++||||+. .|......+++.+ ++.+.|+++
T Consensus 82 ~~~~g~l~i~~-~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvll 160 (234)
T PRK06067 82 FFLWGYLRIFP-LNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILI 160 (234)
T ss_pred HHhCCCceEEe-ccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 111 111110 0011234567888999999999887 9999999999964 4455555554444 445679999
Q ss_pred EecCHHH-------HHhhcCEEEEEe
Q 024529 227 VSHDEHL-------ISGSVEELWVVS 245 (266)
Q Consensus 227 vtHd~~~-------~~~~~d~i~~l~ 245 (266)
++|+..+ +..++|-++.|+
T Consensus 161 t~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 161 TLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred EecCCcCCHHHHHHHHhheEEEEEEE
Confidence 9997654 455678888776
No 453
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.14 E-value=3.9e-11 Score=111.48 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=43.0
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce-EEEEcCe
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFRSAK 118 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~~~ 118 (266)
.+|++|||++++||+++|+|||||||||||+ +|+..|++| +|.+++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 4799999999999999999999999999999 788888888 7988774
No 454
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=3.4e-10 Score=103.74 Aligned_cols=62 Identities=21% Similarity=0.166 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHH
Q 024529 174 TLSGGQKSRVAFAKITFK---------KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS 235 (266)
Q Consensus 174 ~LSgGqkqRv~lAral~~---------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~ 235 (266)
.+|.||+++++||.+|+. +|+|||||||+++||+..+..+++.+...+.+|+++||+.+.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 699999999999999999 99999999999999999999999999766679999999987765
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.05 E-value=4.4e-09 Score=81.14 Aligned_cols=115 Identities=25% Similarity=0.301 Sum_probs=75.0
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCc-eEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (266)
.+..+.|+||+||||||+++.|+....... +.++.... . ......... .
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~------------~----- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE---------D----ILEEVLDQL------------L----- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE---------E----ccccCHHHH------------H-----
Confidence 367899999999999999999999876554 22222110 0 000000000 0
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---------HHhhcCCEEEEEecC
Q 024529 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ---------GLVLFQGGILMVSHD 230 (266)
Q Consensus 160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~---------~l~~~~~tiiivtHd 230 (266)
. ..........++++..+..++++-..+|.++++||+..-.+......... ........+|+++|.
T Consensus 51 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 51 --L---IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred --h---hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 0 11122335788889999999999988899999999999999887654432 112224578888884
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.05 E-value=5.6e-10 Score=93.85 Aligned_cols=118 Identities=15% Similarity=0.248 Sum_probs=71.0
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCC-ceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (266)
++.|.||+||||||+++.|++.+.+. .|.|.... ++.... .... . .......
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e---------~~~E~~-------------~~~~-~----~~i~q~~ 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE---------DPIEFV-------------HESK-R----SLINQRE 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc---------CCcccc-------------ccCc-c----ceeeecc
Confidence 78999999999999999998877643 45553211 111000 0000 0 0000000
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEE
Q 024529 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW 242 (266)
Q Consensus 163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~ 242 (266)
+. .....++. +++++|..+|+++++|||. |.+....+++.. ..+..++.++|..+... ..+|++
T Consensus 56 vg-----~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~ 119 (198)
T cd01131 56 VG-----LDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAK-TIDRII 119 (198)
T ss_pred cC-----CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHH-HHhHHH
Confidence 00 00112222 5889999999999999996 777766666544 45778999999887554 456654
Q ss_pred EE
Q 024529 243 VV 244 (266)
Q Consensus 243 ~l 244 (266)
.+
T Consensus 120 ~l 121 (198)
T cd01131 120 DV 121 (198)
T ss_pred hh
Confidence 43
No 457
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.00 E-value=1.6e-09 Score=108.95 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=87.6
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-CCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 148 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
.+-+|+++. ..+.++.|+|||++||||+||.++-.. -..-|. |+|-... .+. .
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~----------~VPa~~a-~i~----~---------- 649 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS----------FVPAESA-RIG----I---------- 649 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC----------ceeccce-Eec----c----------
Confidence 455777777 667899999999999999999986431 111221 1111100 000 0
Q ss_pred CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCHHHH-HHHHHHHhhc-C
Q 024529 149 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEP---SNHLDLDAV-EALIQGLVLF-Q 221 (266)
Q Consensus 149 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEP---t~~LD~~~~-~~l~~~l~~~-~ 221 (266)
+..++.++|-.++ -...+|-=+.....++.+|-. ++.++|+||| |+.+|..+. ..+++.|.+. +
T Consensus 650 -----~d~I~triga~d~----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~ 720 (854)
T PRK05399 650 -----VDRIFTRIGASDD----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIG 720 (854)
T ss_pred -----cCeeeeccCcccc----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCC
Confidence 0112223443332 234678777777788887755 8999999999 999997764 4578888776 4
Q ss_pred CEEEEEecCHHHHHhhcCE
Q 024529 222 GGILMVSHDEHLISGSVEE 240 (266)
Q Consensus 222 ~tiiivtHd~~~~~~~~d~ 240 (266)
.++|++||+.++.. ++++
T Consensus 721 ~~~l~aTH~~el~~-l~~~ 738 (854)
T PRK05399 721 AKTLFATHYHELTE-LEEK 738 (854)
T ss_pred ceEEEEechHHHHH-Hhhh
Confidence 68999999966544 5553
No 458
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.99 E-value=1.6e-09 Score=110.20 Aligned_cols=76 Identities=29% Similarity=0.386 Sum_probs=64.4
Q ss_pred CCCCCCChHHHHHHHHHHHHc------cC--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhc
Q 024529 170 QPMYTLSGGQKSRVAFAKITF------KK--PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSV 238 (266)
Q Consensus 170 ~~~~~LSgGqkqRv~lAral~------~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~ 238 (266)
+++.+|||||+-.++||-+|+ .+ -++|+|||||.+||+.++..+++.|... +.+|+||||+.++.. .+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-RA 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-hC
Confidence 688999999999888877664 45 6999999999999999999888877653 468999999999987 58
Q ss_pred CEEEEEeC
Q 024529 239 EELWVVSE 246 (266)
Q Consensus 239 d~i~~l~~ 246 (266)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 88887753
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.98 E-value=2e-09 Score=90.29 Aligned_cols=110 Identities=23% Similarity=0.261 Sum_probs=67.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHH
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLG 159 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~ 159 (266)
++||+||||||||||.++|++++ ..|.+ .+++.+.+. ............. ..+ ..+.+...+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~--------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV--------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFDFDLLISHLQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe--------EEEEecccc-cccccccHHHhccCCCCCCCcccHHHHHHHHH
Confidence 58999999999999999999987 22333 233332211 0011101100000 011 122344556666
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 024529 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 208 (266)
Q Consensus 160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~ 208 (266)
.+...+ ..+.|..++|.|++++..+ .+.+++++|+|+|+.+.++.
T Consensus 70 ~l~~~~-~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 70 DLKNGK-SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHCCC-CEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 666543 3457788999999876655 57889999999999999863
No 460
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.97 E-value=7.4e-09 Score=96.74 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=42.6
Q ss_pred cCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 65 YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 65 y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|..+++.|.+.
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~ 195 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIA 195 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEE
Confidence 33345688999 99999999999999999999999999999999877553
No 461
>PRK14079 recF recombination protein F; Provisional
Probab=98.93 E-value=2.4e-09 Score=97.58 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEE
Q 024529 173 YTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWV 243 (266)
Q Consensus 173 ~~LSgGqkqRv~lAral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~ 243 (266)
..+|+||++++++|..|+ .+|+++|||||+++||...+.++.+.+.....++|-.|+ ....|++++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~----~~~~~~~~~~ 337 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE----APPGAALTLR 337 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC----CCCCCceEEE
Confidence 358999999999999998 899999999999999999999999988655444444443 3457999999
Q ss_pred EeCCeEE
Q 024529 244 VSEGKAT 250 (266)
Q Consensus 244 l~~G~i~ 250 (266)
+.+|++.
T Consensus 338 ~~~~~~~ 344 (349)
T PRK14079 338 IEAGVFT 344 (349)
T ss_pred EeccEec
Confidence 9999875
No 462
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.90 E-value=2.5e-09 Score=112.37 Aligned_cols=66 Identities=27% Similarity=0.269 Sum_probs=57.8
Q ss_pred cCCCCCCChHHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 024529 169 LQPMYTLSGGQKSRVA----FAKI--------TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 234 (266)
Q Consensus 169 ~~~~~~LSgGqkqRv~----lAra--------l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~ 234 (266)
++.++.|||||||+++ +|++ +..+|+++||||||++||+.+...+++.+.+++.++||+||+++-.
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~Wg~ 1319 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREWGC 1319 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchhcc
Confidence 3456899999999996 5655 5589999999999999999999999999999999999999987643
No 463
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.90 E-value=4.8e-09 Score=90.62 Aligned_cols=121 Identities=24% Similarity=0.348 Sum_probs=70.5
Q ss_pred CcEEEEECCCCchHHHHHHHHhC------------CCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAG------------ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 149 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 149 (266)
|....|+||.|+|||||+-.++= ...+..|.| .|+.-+ . ....
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~V--------lyi~~E--------d-~~~~-------- 55 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRV--------VYLSAE--------D-PREE-------- 55 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceE--------EEEECC--------C-CHHH--------
Confidence 67889999999999999887752 111122222 222211 0 0011
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH----------------HHccCCCEEEEeCCCCC------CCH
Q 024529 150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK----------------ITFKKPHIILLDEPSNH------LDL 207 (266)
Q Consensus 150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr----------------al~~~p~lllLDEPt~~------LD~ 207 (266)
-.+++..+...+++.+ ..++.. ..+|+.|++.+++ +...+|+++++| |++. +|+
T Consensus 56 i~~Rl~~i~~~~~~~~-~~~rl~--~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~ 131 (239)
T cd01125 56 IHRRLEAILQHLEPDD-AGDRLF--IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDN 131 (239)
T ss_pred HHHHHHHHHhhcCCcC-cccceE--EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCH
Confidence 1234444555454322 111211 1245555555443 345799999999 7754 688
Q ss_pred HHHHHHHHHHh----hcCCEEEEEecCH
Q 024529 208 DAVEALIQGLV----LFQGGILMVSHDE 231 (266)
Q Consensus 208 ~~~~~l~~~l~----~~~~tiiivtHd~ 231 (266)
.....+++.|. +.+.+||+++|..
T Consensus 132 ~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 132 GAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 87777766654 3467999999976
No 464
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.88 E-value=4.9e-09 Score=97.52 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=56.3
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 116 (266)
+..++.++++..|..+..+++.++ .|.+|++++|+||||||||||+++|+++.+|+.|.|...
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~li 199 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALV 199 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeec
Confidence 456899999999976667888885 999999999999999999999999999999999987653
No 465
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=3.5e-08 Score=86.85 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=61.3
Q ss_pred CCCChHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC--EEEEEecCHHHHHhhcCEEEEE
Q 024529 173 YTLSGGQKSRVAFAKITFK--KPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 173 ~~LSgGqkqRv~lAral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--tiiivtHd~~~~~~~~d~i~~l 244 (266)
..||-|+.+-+++|.+|++ .|.+++||||-.+|-|.....+...+....+ -||++||..+++..+--+-++.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v~~ 344 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSVFW 344 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccceEE
Confidence 4899999999999999986 6899999999999999999888888876543 7999999999998765444433
No 466
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.84 E-value=9.5e-09 Score=96.71 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=88.9
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHH---HHhC-
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM---MRCF- 146 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~---~~~~- 146 (266)
++++.++.+..|.+++++||||+||||++..|++.+.+..|.. +++++.++.+ .. ...+.+ ....
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~------kV~LI~~Dt~---Ri--gA~EQLr~~AeilG 313 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS------KVALLTTDSY---RI--GGHEQLRIYGKILG 313 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC------eEEEEeCCcc---ch--hHHHHHHHHHHHhC
Confidence 4566777788999999999999999999999999887766642 4567766542 11 122221 1111
Q ss_pred -C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH-HHHHHHHccCC-----CEEEEeCCCCCCCHHHHHHHHHHHh
Q 024529 147 -P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR-VAFAKITFKKP-----HIILLDEPSNHLDLDAVEALIQGLV 218 (266)
Q Consensus 147 -~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR-v~lAral~~~p-----~lllLDEPt~~LD~~~~~~l~~~l~ 218 (266)
+ ..............++.+. ....+.+...+++.. +.-..+++.++ .+|+||.++.+-+ ..++.+.+.
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~-d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~---l~~i~~~f~ 389 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNK-HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT---LNEVVQAYR 389 (484)
T ss_pred CCeeccCCchhHHHHHHhccCC-CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH---HHHHHHHhc
Confidence 1 0011122223333444332 234556644444322 22333344443 6899999987733 334444444
Q ss_pred hcCCEEEEEec-C--------HHHHHhhcCEEEEEeCCeE
Q 024529 219 LFQGGILMVSH-D--------EHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 219 ~~~~tiiivtH-d--------~~~~~~~~d~i~~l~~G~i 249 (266)
..+.+-+|.|+ | ++.+....=-|..+..|+-
T Consensus 390 ~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~ 429 (484)
T PRK06995 390 GPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQR 429 (484)
T ss_pred cCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCC
Confidence 44444444565 2 1122222334677777764
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.79 E-value=3e-09 Score=88.51 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=39.7
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 116 (266)
.+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie 59 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE 59 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC
Confidence 445677889999999999999999999999999999998887653
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.78 E-value=7e-10 Score=105.35 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=83.1
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHH--hCCCCCCceEEEEcCee----------eEEEEeccccCCCCCCCcHHHHHHHh
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSSGTVFRSAKV----------RIAVFSQHHVDGLDLSSNPLLYMMRC 145 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~~~~~----------~i~~~~q~~~~~~~~~~~~~~~~~~~ 145 (266)
-+++|..+.|.|++|||||||...+ .|..++.+..+++.... .+|+-.+..... . .+ ..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~----g----~l-~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE----G----KL-FI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----C----ce-EE
Confidence 4679999999999999999998876 45554333334322100 011111100000 0 00 00
Q ss_pred CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHH---HHHHhhc
Q 024529 146 FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA--KITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLF 220 (266)
Q Consensus 146 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA--ral~~~p~lllLDEPt~~LD~~~~~~l---~~~l~~~ 220 (266)
....+......+++.+++.+ ..++....+|+|++|||.|+ .+|...|+.+ ...+..+ ++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~-~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~ 156 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSA-LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQI 156 (484)
T ss_pred EecCchhccccccccCCHHH-HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHC
Confidence 00000001111233445432 34456678999999999999 5555555443 3344444 4555666
Q ss_pred CCEEEEEecCHHH---------HHhhcCEEEEEe
Q 024529 221 QGGILMVSHDEHL---------ISGSVEELWVVS 245 (266)
Q Consensus 221 ~~tiiivtHd~~~---------~~~~~d~i~~l~ 245 (266)
+.|+|++||+.+. .+.+||.|+.|+
T Consensus 157 g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 157 GVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred CCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 7899999998764 255789999886
No 469
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.77 E-value=5.5e-08 Score=101.37 Aligned_cols=143 Identities=20% Similarity=0.337 Sum_probs=78.8
Q ss_pred eceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-CCCceEEEEcCeeeEEEEeccc--cCCCCCCC-cHHHHHHHhCCCC
Q 024529 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHH--VDGLDLSS-NPLLYMMRCFPGV 149 (266)
Q Consensus 74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~~~~q~~--~~~~~~~~-~~~~~~~~~~~~~ 149 (266)
=+++..+.+++++|+|++|+|||||++.+++.+ ...+|.++++.. ++.+.. ........ ..... .
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~----~v~~~~~~~~~~~~~~~~~~~~-------l 267 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA----FISKSMEIYSSANPDDYNMKLH-------L 267 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc----ccccchhhcccccccccchhHH-------H
Confidence 356778889999999999999999999996544 445787775431 111100 00000000 00000 0
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 024529 150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM 226 (266)
Q Consensus 150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiii 226 (266)
..+.+.+++...++ .+..+ ++.++| |..++-+|+||+- |.......+..... .+.+||+
T Consensus 268 ~~~~l~~il~~~~~-------~~~~~-~~~~~~------L~~krvLLVLDdv----~~~~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 268 QRAFLSEILDKKDI-------KIYHL-GAMEER------LKHRKVLIFIDDL----DDQDVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred HHHHHHHHhCCCCc-------ccCCH-HHHHHH------HhCCeEEEEEeCC----CCHHHHHHHHhhCccCCCCcEEEE
Confidence 11223333433333 12222 555555 3466778889984 33322222222222 2457999
Q ss_pred EecCHHHHHhh-cCEEEEEe
Q 024529 227 VSHDEHLISGS-VEELWVVS 245 (266)
Q Consensus 227 vtHd~~~~~~~-~d~i~~l~ 245 (266)
+|||...+... +++++.+.
T Consensus 330 TTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEec
Confidence 99999998754 68887764
No 470
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.71 E-value=5.4e-08 Score=94.92 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=70.2
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHH-HHHHhCCCCcHHHHHHHHH
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL-YMMRCFPGVPEQKLRAHLG 159 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 159 (266)
..+.++|+||||||||||+++|.+..++..|+-.... ..++..+.. .+........ .+.........+.+...++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~---~~fv~i~~~-~l~~d~~~i~~~llg~~~~~~~~~a~~~l~ 249 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAED---APFVEVDGT-TLRWDPREVTNPLLGSVHDPIYQGARRDLA 249 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCC---CCeEEEech-hccCCHHHHhHHhcCCccHHHHHHHHHHHH
Confidence 4467999999999999999999998876555311000 011111100 0000000000 0100000111223455677
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
.+|+.. .....+..+||| +|+||| +..||+..+..+.+.+.+
T Consensus 250 ~~gl~~-~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 250 ETGVPE-PKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HcCCCc-hhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 788864 445677899999 999999 799999999999888864
No 471
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.70 E-value=2.5e-08 Score=91.37 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=49.6
Q ss_pred CcEEEEeeEEEcCCCCccee-----------eceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 54 PIISFSDASFGYPGGPILFK-----------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~-----------~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
.-+.++||++.||+.+.+|+ |+++.|.+|+.++|+||.|||||||++.|+..+..
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 35899999999987767887 99999999999999999999999999999987643
No 472
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.69 E-value=7.7e-07 Score=76.82 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=33.2
Q ss_pred ccCCCEEEEeCCCCCCCHHHHH----HHHHHHhh-cCCEEEEEecCHHHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVE----ALIQGLVL-FQGGILMVSHDEHLIS 235 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~----~l~~~l~~-~~~tiiivtHd~~~~~ 235 (266)
+.+..++|+||+..|=++.... .+++.|.+ .+..+|++||+.++..
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 4567899999999999987543 45666766 4667999999998754
No 473
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.68 E-value=1.4e-07 Score=95.25 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=43.3
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHH---hhcCCEEEEEecCHHHHHh
Q 024529 185 FAKITFKKPHIILLDEPSNHL-DLDAVEALIQGL---VLFQGGILMVSHDEHLISG 236 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~L-D~~~~~~l~~~l---~~~~~tiiivtHd~~~~~~ 236 (266)
|++++..+|+++++|||+.+| |+.....+.+.+ ++.+++++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 577888999999999999999 687777666655 4557799999999998875
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.66 E-value=1.1e-07 Score=86.50 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=68.2
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 157 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
..++..+.|.||+||||||+++.|.+.+. +..|.|... .++.. .. .+... ..+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti---------Edp~E----------~~---~~~~~-~~i~-- 173 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI---------EDPIE----------YV---HRNKR-SLIN-- 173 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE---------cCChh----------hh---ccCcc-ceEE--
Confidence 45688999999999999999999998665 345555421 11110 00 00000 0000
Q ss_pred HHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 024529 158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH 232 (266)
Q Consensus 158 l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~ 232 (266)
-...+.. ..+ ---+++++|-.+|+++++||+. |+++....++.. ..|..|+.+.|-.+
T Consensus 174 q~evg~~---------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 174 QREVGLD---------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTNS 231 (343)
T ss_pred ccccCCC---------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCCC
Confidence 0001110 111 1225778999999999999997 888877666643 44678899999743
No 475
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.65 E-value=3.4e-08 Score=91.78 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=53.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 115 (266)
+.++.+.++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+..
T Consensus 128 ~~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~ 188 (433)
T PRK07594 128 PAMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL 188 (433)
T ss_pred CceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEE
Confidence 3577788888886566789999 999999999999999999999999999999998876643
No 476
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.63 E-value=3.4e-08 Score=82.20 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=87.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 163 (266)
+++|+|..||||||+.+.+.-.. |-.. ++. ......+.. ....-..++.+.||-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~----~~~~-----------------i~~-D~~~~~~~~----~~~~~~~~i~~~fg~ 54 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY----HFPV-----------------IDA-DKIAHQVVE----KGSPAYEKIVDHFGA 54 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc----CCeE-----------------EeC-CHHHHHHHh----cCChHHHHHHHHHCH
Confidence 48999999999999999997542 1000 011 111111111 111223345556662
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHH--HHhhc
Q 024529 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHL--ISGSV 238 (266)
Q Consensus 164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~--~~~~~ 238 (266)
...+ .-|+-+|..||.++..+|+.+..+| +.+||.....+.+.+.+. +.+||+.+|.+.. +...|
T Consensus 55 --~i~~------~~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~ 124 (188)
T TIGR00152 55 --QILN------EDGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLC 124 (188)
T ss_pred --HHhC------CCCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhC
Confidence 2211 1388999999999999999988877 789999998888877654 3489999998855 67789
Q ss_pred CEEEEEeCCe
Q 024529 239 EELWVVSEGK 248 (266)
Q Consensus 239 d~i~~l~~G~ 248 (266)
|.+++++.+.
T Consensus 125 D~vv~V~~~~ 134 (188)
T TIGR00152 125 DRVIVVDVSP 134 (188)
T ss_pred CEEEEEECCH
Confidence 9999998654
No 477
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.62 E-value=2e-07 Score=74.46 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH-----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT-----FKKPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
++...+..++..-.....+...+|+++.++....... ...++++ |+|++|..+..++.+.+.+
T Consensus 101 ~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 101 EMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEK 168 (170)
T ss_pred HHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHH
Confidence 3455666665432222334567889988877655542 3455655 9999999999999888765
No 478
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.62 E-value=4.8e-08 Score=66.21 Aligned_cols=38 Identities=34% Similarity=0.485 Sum_probs=30.2
Q ss_pred eeeceEEEeC-CcEEEEECCCCchHHHHHHHHhCCCCCC
Q 024529 72 FKNLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGELQPS 109 (266)
Q Consensus 72 l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 109 (266)
+++-++++.+ |+++.|+|||||||||||.+|.=++-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4556777775 5699999999999999999987655443
No 479
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.59 E-value=9.7e-08 Score=85.86 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=45.9
Q ss_pred eeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 60 ~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
.++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+.
T Consensus 48 ~~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~ 101 (326)
T cd01136 48 PIDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIA 101 (326)
T ss_pred cceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEE
Confidence 3444554456689999 99999999999999999999999999999999877654
No 480
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.57 E-value=1.1e-07 Score=69.86 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=37.8
Q ss_pred CCCCCCChHHHHH-HHHHHHH------cc------CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 170 QPMYTLSGGQKSR-VAFAKIT------FK------KPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 170 ~~~~~LSgGqkqR-v~lAral------~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
++.+.+||||+|. +.+|.++ .. .|.+++|||||++||+..+..+++.+++
T Consensus 28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 5678999999954 3333332 22 3799999999999999999999988763
No 481
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.54 E-value=7.1e-08 Score=91.47 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=52.7
Q ss_pred EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (266)
Q Consensus 58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~ 117 (266)
+.|++..| +...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++....
T Consensus 187 ~~d~~~v~-Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~ 245 (506)
T PRK09862 187 QHDLSDVI-GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES 245 (506)
T ss_pred ccCeEEEE-CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence 45888888 455688999999999999999999999999999999999999999887554
No 482
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.54 E-value=3.6e-06 Score=84.82 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=36.0
Q ss_pred eceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (266)
Q Consensus 74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 115 (266)
-+||.+..+..++|+|++|||||||++.|++......+.|.+
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~ 479 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFF 479 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEE
Confidence 357788888899999999999999999999987777777754
No 483
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.53 E-value=4.4e-07 Score=91.28 Aligned_cols=130 Identities=21% Similarity=0.177 Sum_probs=71.9
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-CCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 149 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 149 (266)
+=+|+++. ....++.|+|||.+||||+||.++=.. -...|. |+|-... .+. .
T Consensus 582 VpNdi~l~-~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~----------~VPA~~a-~i~----~----------- 634 (840)
T TIGR01070 582 VPNDLEMA-HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGS----------FVPAESA-ELP----L----------- 634 (840)
T ss_pred EeeeeecC-CCccEEEEECCCCCCchHHHHHHHHHHHHHhcCC----------Cccchhe-Eec----c-----------
Confidence 33555554 334589999999999999999885221 011111 1111000 000 0
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHH-HHHHHHHHhh-cCC
Q 024529 150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHLDLDA-VEALIQGLVL-FQG 222 (266)
Q Consensus 150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLDEP---t~~LD~~~-~~~l~~~l~~-~~~ 222 (266)
+..++.++|-.+.+. ..+|.=+.....+|..| +.++.++|+||+ |+.+|-.+ ...+++.|.+ .+.
T Consensus 635 ----~D~Iftrig~~d~i~----~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~ 706 (840)
T TIGR01070 635 ----FDRIFTRIGASDDLA----SGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRA 706 (840)
T ss_pred ----ccEEEEecCcccchh----cCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCC
Confidence 001122333332221 23333233333344443 578999999999 56666555 4457788877 566
Q ss_pred EEEEEecCHHHHH
Q 024529 223 GILMVSHDEHLIS 235 (266)
Q Consensus 223 tiiivtHd~~~~~ 235 (266)
.++++||..++..
T Consensus 707 ~~~~~TH~~eL~~ 719 (840)
T TIGR01070 707 KTLFATHYFELTA 719 (840)
T ss_pred EEEEEcCchHHHH
Confidence 7999999987654
No 484
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.53 E-value=8e-08 Score=89.39 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=39.2
Q ss_pred CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (266)
Q Consensus 68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 111 (266)
+..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 34589999 99999999999999999999999999999988743
No 485
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=1.5e-06 Score=67.47 Aligned_cols=106 Identities=22% Similarity=0.337 Sum_probs=62.9
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 160 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (266)
.+..+.|+||.|+|||||++.++.........+. ++..... . ..... ......
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~--------~~~~~~~-----~-~~~~~-------------~~~~~~ 70 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFL--------YLNASDL-----L-EGLVV-------------AELFGH 70 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE--------EEehhhh-----h-hhhHH-------------HHHhhh
Confidence 5778999999999999999999987653222221 1111000 0 00000 000000
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCEEEEEecCHH
Q 024529 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--------QGGILMVSHDEH 232 (266)
Q Consensus 161 ~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--------~~tiiivtHd~~ 232 (266)
. .+......+...++.++++||.-.. ++.....+.+.+... +..+|+++++..
T Consensus 71 ~------------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 F------------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred h------------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 5556666777889999999998654 444555555555432 346888888654
No 486
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.48 E-value=1e-06 Score=73.11 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHH--HHHHHcc-CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA--FAKITFK-KPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~--lAral~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
++.+.++..++.-.....++..+|+|+++++. +++.+-. +++++ |+|++|..+.+++.+.+.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~ 191 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAK 191 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHH
Confidence 34555666665423333466789999999977 5565543 34443 9999999999998888765
No 487
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.47 E-value=3.6e-08 Score=84.42 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.3
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHh
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIA 103 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~ 103 (266)
-+++|+.++|.|++|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 47899999999999999999988654
No 488
>PRK08149 ATP synthase SpaL; Validated
Probab=98.46 E-value=2.7e-07 Score=85.77 Aligned_cols=48 Identities=15% Similarity=0.356 Sum_probs=41.9
Q ss_pred CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc---eEEEE
Q 024529 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFR 115 (266)
Q Consensus 67 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~ 115 (266)
.+..+++++ +++.+|++++|+|+||+|||||+++|++...++. |.|..
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~ 187 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGE 187 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEee
Confidence 345689999 9999999999999999999999999999988875 55543
No 489
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.44 E-value=2.4e-07 Score=86.38 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=45.3
Q ss_pred eEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 61 l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
++..+..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+.
T Consensus 125 i~~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~ 177 (422)
T TIGR02546 125 IDQPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIA 177 (422)
T ss_pred cccccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEE
Confidence 333443455689999 99999999999999999999999999999999887764
No 490
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.41 E-value=3.6e-07 Score=85.27 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=43.4
Q ss_pred CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (266)
Q Consensus 67 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 116 (266)
.+..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.|...
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~i 197 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALI 197 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEE
Confidence 345689999 9999999999999999999999999999999988876543
No 491
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.41 E-value=3.6e-07 Score=84.79 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=47.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 113 (266)
.++-..++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|++...|+.+.+
T Consensus 111 ~~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi 168 (411)
T TIGR03496 111 PLKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVV 168 (411)
T ss_pred HHhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 345555666665455688888 9999999999999999999999999999999886654
No 492
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.40 E-value=2e-07 Score=78.35 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=26.2
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 493
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.40 E-value=2e-06 Score=78.73 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=33.3
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++++.++.++.|.+++++||||+||||++..|++.+
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999865
No 494
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.39 E-value=3.7e-07 Score=84.79 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=47.1
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 115 (266)
++-..++.-+..+..+++ .+|.+.+|++++|+|+||+|||||+++|++..+|+.|.|..
T Consensus 115 ~~R~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~ 173 (418)
T TIGR03498 115 MSRARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIAL 173 (418)
T ss_pred hhccCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 334444544544545665 69999999999999999999999999999999999887653
No 495
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.39 E-value=7.4e-06 Score=71.82 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=31.1
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.|+.+.--+.+|+++.|.|++|+|||||+..++-..
T Consensus 19 ~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 19 VLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred eeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 577777789999999999999999999998876543
No 496
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.38 E-value=2.6e-07 Score=76.72 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=25.8
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
.|++++|+||||||||||+++|++...|
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3789999999999999999999998765
No 497
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.38 E-value=2.4e-07 Score=76.46 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
+|++++|+|+||||||||+++|+|++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5999999999999999999999999876
No 498
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.38 E-value=4.5e-07 Score=84.17 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=45.2
Q ss_pred eEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 61 l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.|.
T Consensus 117 ~~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~ 169 (413)
T TIGR03497 117 IRDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIA 169 (413)
T ss_pred hhhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEE
Confidence 334454455689999 99999999999999999999999999999999888664
No 499
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.37 E-value=6.6e-07 Score=83.49 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=38.7
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEE
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFR 115 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 115 (266)
..+++++ |.+.+|++++|+|+||||||||+++|+|+.++ +.|.|..
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~l 198 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL 198 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEE
Confidence 3478887 99999999999999999999999999998854 3355543
No 500
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.37 E-value=2.9e-06 Score=78.19 Aligned_cols=167 Identities=15% Similarity=0.172 Sum_probs=98.2
Q ss_pred eEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHH-hCCCCCCceEEEEcCeeeEEEEeccc----cCCCCCC
Q 024529 61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI-AGELQPSSGTVFRSAKVRIAVFSQHH----VDGLDLS 135 (266)
Q Consensus 61 l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l-~Gl~~p~~G~i~~~~~~~i~~~~q~~----~~~~~~~ 135 (266)
+++..+++.. +. =+-|++| ++.|+|.+=-||||||++| .|.|.---| +|+..+...+.-. .++-.+.
T Consensus 227 ve~~LP~~g~-v~--GMGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~VVT~~~avkirAEDGR~V~ 298 (448)
T PF09818_consen 227 VEIELPNGGT-VT--GMGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREFVVTDPDAVKIRAEDGRSVE 298 (448)
T ss_pred EEEECCCCCE-EE--EEeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceEEEECCCceEEEecCCceEe
Confidence 5666654332 23 3678999 9999999999999999999 577653222 1221111000000 0111111
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215 (266)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~ 215 (266)
...+..+....+ .|.+. .+-.-.+=||-.-|=..|..||=..+++||+||=|++--..-+...++
T Consensus 299 ~vDISpFI~~LP-------------~g~dT--~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq 363 (448)
T PF09818_consen 299 GVDISPFINNLP-------------GGKDT--TCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQ 363 (448)
T ss_pred CccchHHHhhCC-------------CCCCC--CcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHH
Confidence 100111111111 12211 122345789999999999999999999999999999876543222222
Q ss_pred -------------------HHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 216 -------------------GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 216 -------------------~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
...+.+.+.|+|+--......+||+|+.|++-+..
T Consensus 364 ~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 364 ALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred HhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 22344666666666666666689999999987653
Done!