Query 024529
Match_columns 266
No_of_seqs 398 out of 2423
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-53 4.1E-58 374.8 24.2 204 54-260 6-232 (275)
2 3tif_A Uncharacterized ABC tra 100.0 5.4E-53 1.8E-57 363.2 22.9 202 55-260 1-233 (235)
3 3tui_C Methionine import ATP-b 100.0 9E-53 3.1E-57 380.9 25.3 205 52-260 21-252 (366)
4 2olj_A Amino acid ABC transpor 100.0 2.1E-52 7.2E-57 364.8 26.8 202 54-260 23-247 (263)
5 1b0u_A Histidine permease; ABC 100.0 3.4E-52 1.2E-56 363.6 25.7 202 54-260 5-241 (262)
6 3fvq_A Fe(3+) IONS import ATP- 100.0 3.8E-52 1.3E-56 376.5 26.4 203 54-261 3-228 (359)
7 4g1u_C Hemin import ATP-bindin 100.0 2.2E-52 7.4E-57 365.5 23.3 202 54-260 10-236 (266)
8 2pcj_A ABC transporter, lipopr 100.0 4.9E-52 1.7E-56 354.8 23.6 196 54-255 3-222 (224)
9 1vpl_A ABC transporter, ATP-bi 100.0 4.4E-52 1.5E-56 361.6 23.4 205 52-261 12-235 (256)
10 1ji0_A ABC transporter; ATP bi 100.0 7.4E-52 2.5E-56 357.1 24.0 202 54-260 5-227 (240)
11 3rlf_A Maltose/maltodextrin im 100.0 7.2E-52 2.5E-56 377.1 24.8 201 55-260 3-222 (381)
12 1z47_A CYSA, putative ABC-tran 100.0 1.4E-51 4.9E-56 372.6 26.4 206 51-260 10-234 (355)
13 2ihy_A ABC transporter, ATP-bi 100.0 2.1E-52 7.2E-57 367.8 19.2 205 52-259 18-250 (279)
14 1g6h_A High-affinity branched- 100.0 2.6E-52 8.9E-57 363.4 19.1 200 54-258 6-239 (257)
15 2yyz_A Sugar ABC transporter, 100.0 5.6E-51 1.9E-55 369.5 25.6 201 55-260 3-222 (359)
16 2yz2_A Putative ABC transporte 100.0 3.8E-51 1.3E-55 357.7 23.5 205 55-261 2-227 (266)
17 2nq2_C Hypothetical ABC transp 100.0 5.6E-51 1.9E-55 354.2 23.4 198 55-259 4-215 (253)
18 2it1_A 362AA long hypothetical 100.0 8.4E-51 2.9E-55 368.7 25.6 201 55-260 3-222 (362)
19 3d31_A Sulfate/molybdate ABC t 100.0 5.3E-51 1.8E-55 368.5 23.9 200 55-260 1-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 8.2E-51 2.8E-55 350.5 24.0 198 55-260 1-215 (240)
21 1oxx_K GLCV, glucose, ABC tran 100.0 6.9E-51 2.4E-55 368.7 24.3 201 55-260 3-229 (353)
22 1g29_1 MALK, maltose transport 100.0 1.8E-50 6.2E-55 368.1 25.9 201 55-260 3-228 (372)
23 3nh6_A ATP-binding cassette SU 100.0 1.7E-50 5.9E-55 359.4 24.8 203 54-261 52-277 (306)
24 2ff7_A Alpha-hemolysin translo 100.0 2.8E-50 9.5E-55 348.7 24.7 201 55-260 7-231 (247)
25 1v43_A Sugar-binding transport 100.0 1.6E-50 5.5E-55 368.1 24.1 201 55-260 11-230 (372)
26 2pjz_A Hypothetical protein ST 100.0 1.4E-50 4.9E-55 353.2 21.4 199 55-260 1-214 (263)
27 1mv5_A LMRA, multidrug resista 100.0 1.4E-50 4.9E-55 349.7 19.4 202 55-261 1-226 (243)
28 2zu0_C Probable ATP-dependent 100.0 3E-50 1E-54 352.2 21.5 204 53-260 18-253 (267)
29 2ixe_A Antigen peptide transpo 100.0 2.3E-49 7.8E-54 347.3 25.4 202 53-260 14-244 (271)
30 2pze_A Cystic fibrosis transme 100.0 4.5E-49 1.5E-53 337.5 25.1 199 54-260 5-217 (229)
31 2d2e_A SUFC protein; ABC-ATPas 100.0 3.2E-50 1.1E-54 348.9 18.0 199 55-257 3-229 (250)
32 2qi9_C Vitamin B12 import ATP- 100.0 4.3E-49 1.5E-53 341.4 24.1 195 55-259 4-220 (249)
33 2cbz_A Multidrug resistance-as 100.0 1.8E-49 6.3E-54 341.6 21.2 198 55-260 3-216 (237)
34 2ghi_A Transport protein; mult 100.0 1E-48 3.5E-53 341.3 24.3 201 54-260 16-241 (260)
35 1sgw_A Putative ABC transporte 100.0 1.9E-49 6.3E-54 336.3 14.5 190 53-249 8-210 (214)
36 3b5x_A Lipid A export ATP-bind 100.0 9.9E-47 3.4E-51 362.6 29.1 202 54-260 340-566 (582)
37 3gd7_A Fusion complex of cysti 100.0 8.3E-48 2.8E-52 352.2 19.7 201 53-261 17-242 (390)
38 3b60_A Lipid A export ATP-bind 100.0 1.1E-46 3.7E-51 362.4 28.4 203 54-261 340-567 (582)
39 3qf4_B Uncharacterized ABC tra 100.0 4.1E-47 1.4E-51 366.3 24.7 203 54-261 353-578 (598)
40 4a82_A Cystic fibrosis transme 100.0 9.2E-47 3.1E-51 362.6 26.9 203 54-261 338-564 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 2E-46 6.8E-51 360.7 27.7 203 54-261 340-566 (587)
42 2yl4_A ATP-binding cassette SU 100.0 6.9E-46 2.4E-50 357.6 27.9 200 56-260 342-569 (595)
43 2bbs_A Cystic fibrosis transme 100.0 2.9E-46 9.9E-51 330.2 21.7 195 54-260 39-246 (290)
44 2iw3_A Elongation factor 3A; a 100.0 2.8E-44 9.4E-49 358.1 19.3 202 52-254 668-980 (986)
45 4f4c_A Multidrug resistance pr 100.0 6.3E-44 2.2E-48 369.3 22.4 203 54-261 1075-1304(1321)
46 4f4c_A Multidrug resistance pr 100.0 2.4E-43 8.3E-48 364.9 26.5 202 54-260 414-640 (1321)
47 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-44 1.1E-48 341.7 18.3 202 52-261 284-493 (538)
48 3bk7_A ABC transporter ATP-bin 100.0 6.5E-44 2.2E-48 343.4 18.2 201 53-261 355-563 (607)
49 3g5u_A MCG1178, multidrug resi 100.0 6.8E-43 2.3E-47 360.8 27.0 203 54-261 386-613 (1284)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-42 3.8E-47 330.8 21.2 188 53-246 267-461 (538)
51 3g5u_A MCG1178, multidrug resi 100.0 3.6E-42 1.2E-46 355.4 21.5 203 54-261 1029-1258(1284)
52 3j16_B RLI1P; ribosome recycli 100.0 3.8E-42 1.3E-46 330.8 18.4 198 59-262 350-560 (608)
53 2iw3_A Elongation factor 3A; a 100.0 3E-41 1E-45 336.3 23.2 200 55-261 435-635 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 8.2E-42 2.8E-46 325.2 14.1 187 56-247 21-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 2.2E-41 7.5E-46 325.8 15.8 188 55-247 83-304 (607)
56 3j16_B RLI1P; ribosome recycli 100.0 6.3E-39 2.2E-43 308.4 16.5 186 60-248 82-298 (608)
57 3ux8_A Excinuclease ABC, A sub 100.0 7.5E-38 2.6E-42 305.4 17.1 190 69-260 31-297 (670)
58 3ozx_A RNAse L inhibitor; ATP 100.0 1E-37 3.5E-42 296.6 14.7 183 60-248 4-214 (538)
59 3ux8_A Excinuclease ABC, A sub 100.0 5.6E-36 1.9E-40 292.1 17.3 107 152-260 521-639 (670)
60 2vf7_A UVRA2, excinuclease ABC 100.0 3.2E-34 1.1E-38 283.1 20.0 107 152-260 708-826 (842)
61 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.9E-38 1.3E-42 294.2 -13.0 193 53-260 116-337 (460)
62 3pih_A Uvrabc system protein A 100.0 6.9E-33 2.3E-37 275.7 22.5 107 152-260 783-901 (916)
63 4aby_A DNA repair protein RECN 100.0 1.1E-32 3.9E-37 254.0 19.9 75 175-250 296-378 (415)
64 2r6f_A Excinuclease ABC subuni 100.0 3.9E-33 1.3E-37 276.4 17.7 106 153-260 824-941 (972)
65 2ygr_A Uvrabc system protein A 100.0 1.1E-32 3.7E-37 274.1 19.9 107 153-261 842-960 (993)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 2.8E-30 9.6E-35 235.1 13.6 81 169-250 274-363 (365)
67 3b85_A Phosphate starvation-in 100.0 3E-33 1E-37 235.9 -7.7 150 68-249 12-172 (208)
68 4gp7_A Metallophosphoesterase; 100.0 1.3E-30 4.3E-35 213.0 3.4 145 74-236 1-164 (171)
69 1ye8_A Protein THEP1, hypothet 99.9 1.2E-28 4.2E-33 202.8 7.6 151 84-261 2-170 (178)
70 1e69_A Chromosome segregation 99.9 4.2E-28 1.4E-32 217.1 10.7 90 168-258 213-310 (322)
71 1tq4_A IIGP1, interferon-induc 99.9 7.7E-30 2.6E-34 234.8 -11.0 170 69-248 36-255 (413)
72 2v9p_A Replication protein E1; 99.9 4.6E-31 1.6E-35 234.0 -20.0 163 55-259 101-264 (305)
73 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.5E-27 8.5E-32 212.8 -2.6 145 71-261 160-304 (330)
74 3qkt_A DNA double-strand break 99.9 7.8E-24 2.7E-28 190.6 17.7 80 169-249 243-333 (339)
75 3b9q_A Chloroplast SRP recepto 99.9 2.3E-26 7.9E-31 204.1 -2.3 178 72-262 90-299 (302)
76 2o5v_A DNA replication and rep 99.9 6.7E-24 2.3E-28 192.2 13.8 85 170-259 260-354 (359)
77 2o8b_B DNA mismatch repair pro 99.9 6.1E-25 2.1E-29 221.7 6.4 165 53-250 748-930 (1022)
78 1z6g_A Guanylate kinase; struc 99.9 2.5E-27 8.7E-32 200.8 -9.4 157 70-243 11-206 (218)
79 2dpy_A FLII, flagellum-specifi 99.9 7.3E-26 2.5E-30 210.2 -1.0 180 53-257 129-340 (438)
80 2obl_A ESCN; ATPase, hydrolase 99.9 3.6E-26 1.2E-30 206.4 -3.0 181 53-257 43-251 (347)
81 3aez_A Pantothenate kinase; tr 99.9 2.1E-27 7.2E-32 211.7 -12.7 175 54-247 42-245 (312)
82 1tf7_A KAIC; homohexamer, hexa 99.9 1.3E-24 4.5E-29 206.4 4.5 169 55-248 257-444 (525)
83 2og2_A Putative signal recogni 99.9 4.9E-25 1.7E-29 199.5 -0.4 177 73-262 148-356 (359)
84 1znw_A Guanylate kinase, GMP k 99.9 2.7E-27 9.3E-32 198.7 -14.6 163 69-245 9-202 (207)
85 3thx_A DNA mismatch repair pro 99.9 7.8E-23 2.7E-27 204.3 12.0 155 54-250 630-803 (934)
86 1cr0_A DNA primase/helicase; R 99.9 7.3E-23 2.5E-27 180.5 9.4 172 70-249 23-237 (296)
87 2eyu_A Twitching motility prot 99.9 9.8E-25 3.3E-29 189.8 -3.5 140 55-244 5-145 (261)
88 1tf7_A KAIC; homohexamer, hexa 99.9 1.2E-25 4.2E-30 213.5 -11.7 166 55-246 12-209 (525)
89 3sop_A Neuronal-specific septi 99.9 1.9E-24 6.6E-29 188.9 -4.4 139 84-233 4-152 (270)
90 3pih_A Uvrabc system protein A 99.9 1E-21 3.5E-26 195.6 12.8 106 154-261 444-560 (916)
91 1ewq_A DNA mismatch repair pro 99.9 1.8E-22 6.2E-27 198.3 7.0 145 54-235 549-702 (765)
92 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 1.2E-21 4E-26 156.2 10.2 80 169-249 52-142 (148)
93 3thx_B DNA mismatch repair pro 99.9 8.1E-23 2.8E-27 203.7 3.8 152 55-239 640-803 (918)
94 2jeo_A Uridine-cytidine kinase 99.9 3.9E-23 1.3E-27 177.7 0.4 161 67-248 10-180 (245)
95 2ehv_A Hypothetical protein PH 99.9 5.8E-22 2E-26 169.4 7.6 171 55-245 6-206 (251)
96 2i3b_A HCR-ntpase, human cance 99.9 1.7E-23 6E-28 173.5 -2.5 140 82-250 1-166 (189)
97 4a74_A DNA repair and recombin 99.8 5.8E-21 2E-25 161.2 9.9 153 78-248 21-201 (231)
98 2ygr_A Uvrabc system protein A 99.8 7.1E-21 2.4E-25 189.5 12.0 103 157-261 504-617 (993)
99 2r6f_A Excinuclease ABC subuni 99.8 6.7E-21 2.3E-25 189.2 10.5 102 157-260 487-599 (972)
100 2w0m_A SSO2452; RECA, SSPF, un 99.8 2E-20 6.7E-25 157.8 9.6 164 69-247 9-192 (235)
101 2vf7_A UVRA2, excinuclease ABC 99.8 1.6E-20 5.6E-25 185.6 10.5 103 157-261 362-475 (842)
102 3asz_A Uridine kinase; cytidin 99.8 5E-23 1.7E-27 172.5 -9.9 141 79-231 3-161 (211)
103 2qnr_A Septin-2, protein NEDD5 99.8 2.9E-22 1E-26 177.6 -7.7 154 59-232 2-168 (301)
104 1wb9_A DNA mismatch repair pro 99.8 1.6E-20 5.6E-25 185.4 2.6 161 55-249 577-747 (800)
105 1pui_A ENGB, probable GTP-bind 99.8 1.9E-20 6.6E-25 155.9 2.4 158 55-219 3-195 (210)
106 3jvv_A Twitching mobility prot 99.8 1.5E-20 5.2E-25 170.1 1.1 144 60-246 93-245 (356)
107 3kta_B Chromosome segregation 99.8 2.3E-18 8E-23 140.6 13.1 92 169-261 59-158 (173)
108 1nlf_A Regulatory protein REPA 99.8 5.1E-19 1.7E-23 154.7 9.1 147 78-235 26-185 (279)
109 2cvh_A DNA repair and recombin 99.7 7.1E-18 2.4E-22 141.2 10.6 150 70-247 7-185 (220)
110 2qag_C Septin-7; cell cycle, c 99.7 1.5E-19 5.1E-24 166.7 -1.9 156 54-232 10-178 (418)
111 3szr_A Interferon-induced GTP- 99.7 1.9E-20 6.5E-25 180.5 -8.5 170 54-250 9-227 (608)
112 4ad8_A DNA repair protein RECN 99.7 8.4E-18 2.9E-22 159.3 9.7 77 170-247 392-473 (517)
113 1rj9_A FTSY, signal recognitio 99.7 5.7E-19 1.9E-23 156.6 -1.8 155 81-248 101-284 (304)
114 1pzn_A RAD51, DNA repair and r 99.7 1.7E-17 5.7E-22 149.9 7.5 154 71-248 119-303 (349)
115 2ewv_A Twitching motility prot 99.7 1.6E-18 5.4E-23 157.9 0.6 126 71-241 127-253 (372)
116 1s96_A Guanylate kinase, GMP k 99.7 9.8E-19 3.4E-23 148.1 -2.9 144 76-263 10-162 (219)
117 2gza_A Type IV secretion syste 99.7 1.8E-18 6.1E-23 156.9 -1.4 154 57-248 137-303 (361)
118 1n0w_A DNA repair protein RAD5 99.6 1.4E-15 4.9E-20 129.0 13.2 145 78-247 20-209 (243)
119 3auy_A DNA double-strand break 99.6 8.7E-16 3E-20 139.6 11.8 75 170-245 276-359 (371)
120 1lw7_A Transcriptional regulat 99.6 1.7E-18 5.9E-23 157.1 -9.2 164 72-245 158-342 (365)
121 1zp6_A Hypothetical protein AT 99.6 1.1E-18 3.8E-23 143.4 -11.1 136 78-229 5-158 (191)
122 1w1w_A Structural maintenance 99.6 2.8E-15 9.5E-20 138.8 10.2 74 171-245 330-410 (430)
123 2bbw_A Adenylate kinase 4, AK4 99.5 3.8E-17 1.3E-21 140.1 -6.9 131 81-220 26-196 (246)
124 2qag_B Septin-6, protein NEDD5 99.5 5.3E-16 1.8E-20 142.8 0.1 169 55-231 16-219 (427)
125 2bdt_A BH3686; alpha-beta prot 99.5 7E-20 2.4E-24 150.8 -23.5 158 82-260 2-183 (189)
126 1udx_A The GTP-binding protein 99.5 1.2E-15 4.2E-20 140.4 1.4 143 72-232 147-310 (416)
127 1htw_A HI0065; nucleotide-bind 99.5 8.3E-17 2.9E-21 129.5 -6.1 58 58-117 10-67 (158)
128 2qm8_A GTPase/ATPase; G protei 99.5 8.1E-18 2.8E-22 151.3 -14.8 158 55-219 29-257 (337)
129 3lda_A DNA repair protein RAD5 99.5 1.6E-13 5.3E-18 125.8 13.1 143 78-248 174-364 (400)
130 3ec2_A DNA replication protein 99.5 3.9E-15 1.4E-19 121.3 1.3 108 76-231 32-143 (180)
131 1sxj_E Activator 1 40 kDa subu 99.5 5.1E-14 1.8E-18 126.2 8.1 127 84-233 38-176 (354)
132 2kjq_A DNAA-related protein; s 99.5 2.5E-14 8.5E-19 113.8 4.3 91 71-230 30-124 (149)
133 1p9r_A General secretion pathw 99.5 3.7E-17 1.3E-21 150.7 -14.8 135 55-197 143-314 (418)
134 2rcn_A Probable GTPase ENGC; Y 99.4 2.8E-14 9.7E-19 128.7 3.9 111 71-189 205-328 (358)
135 2oap_1 GSPE-2, type II secreti 99.4 2E-16 6.9E-21 149.3 -10.9 159 70-240 248-459 (511)
136 2f1r_A Molybdopterin-guanine d 99.4 5.8E-16 2E-20 126.1 -7.8 97 83-196 3-125 (171)
137 1odf_A YGR205W, hypothetical 3 99.4 4.6E-15 1.6E-19 130.6 -3.0 121 80-208 29-168 (290)
138 3c8u_A Fructokinase; YP_612366 99.4 6E-16 2.1E-20 129.4 -9.0 139 79-240 19-168 (208)
139 1nij_A Hypothetical protein YJ 99.4 1.4E-16 4.8E-21 142.1 -14.6 55 174-237 141-195 (318)
140 3e70_C DPA, signal recognition 99.4 2.3E-14 7.7E-19 128.2 -0.6 167 78-262 125-321 (328)
141 2yhs_A FTSY, cell division pro 99.4 2.2E-14 7.5E-19 133.9 -1.6 163 72-248 283-475 (503)
142 1ls1_A Signal recognition part 99.4 8.8E-13 3E-17 116.3 8.3 131 56-219 77-208 (295)
143 1lvg_A Guanylate kinase, GMP k 99.3 1.3E-15 4.5E-20 126.6 -11.3 143 80-246 2-173 (198)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 7.1E-15 2.4E-19 134.3 -7.7 156 78-257 16-209 (392)
145 1vma_A Cell division protein F 99.3 1.8E-12 6E-17 114.9 7.5 99 74-203 96-197 (306)
146 2yv5_A YJEQ protein; hydrolase 99.3 9E-14 3.1E-18 123.0 -1.2 109 78-187 161-300 (302)
147 2px0_A Flagellar biosynthesis 99.3 4.1E-12 1.4E-16 112.0 8.6 136 80-250 103-245 (296)
148 3euj_A Chromosome partition pr 99.3 9E-13 3.1E-17 123.1 3.7 71 172-245 377-464 (483)
149 2dr3_A UPF0273 protein PH0284; 99.3 5.7E-11 2E-15 100.5 13.7 56 191-246 127-196 (247)
150 1in4_A RUVB, holliday junction 99.3 2.1E-15 7.1E-20 135.2 -15.6 161 55-239 18-210 (334)
151 2x8a_A Nuclear valosin-contain 99.2 3.3E-15 1.1E-19 130.4 -16.9 137 69-219 33-192 (274)
152 2r6a_A DNAB helicase, replicat 99.2 2.7E-11 9.2E-16 112.8 6.6 164 70-248 191-400 (454)
153 1sq5_A Pantothenate kinase; P- 99.2 4.1E-13 1.4E-17 119.0 -5.6 59 54-115 36-115 (308)
154 1u0l_A Probable GTPase ENGC; p 99.1 1.5E-12 5.1E-17 115.0 -2.9 100 77-177 164-294 (301)
155 3lnc_A Guanylate kinase, GMP k 99.1 2E-11 6.7E-16 103.3 2.1 174 70-262 15-225 (231)
156 2zr9_A Protein RECA, recombina 99.1 1E-09 3.5E-14 98.8 11.7 137 78-249 57-232 (349)
157 1oix_A RAS-related protein RAB 99.0 1.5E-10 5.2E-15 94.8 5.5 37 181-219 152-188 (191)
158 1t9h_A YLOQ, probable GTPase E 99.0 9.8E-12 3.3E-16 110.0 -2.2 103 77-181 168-302 (307)
159 3nwj_A ATSK2; P loop, shikimat 99.0 2.2E-11 7.7E-16 104.7 -1.4 54 53-106 15-72 (250)
160 3k1j_A LON protease, ATP-depen 99.0 7.6E-11 2.6E-15 113.5 1.3 155 59-219 38-227 (604)
161 1qhl_A Protein (cell division 99.0 6.8E-12 2.3E-16 106.5 -5.4 54 55-117 9-62 (227)
162 2ius_A DNA translocase FTSK; n 99.0 5.6E-12 1.9E-16 118.5 -7.4 165 74-243 159-361 (512)
163 3tr0_A Guanylate kinase, GMP k 98.9 4E-10 1.4E-14 92.9 2.9 32 76-107 1-32 (205)
164 1svm_A Large T antigen; AAA+ f 98.9 2.7E-12 9.1E-17 116.8 -11.5 127 70-203 157-312 (377)
165 1jjv_A Dephospho-COA kinase; P 98.9 9.5E-10 3.3E-14 91.0 4.0 126 84-246 4-132 (206)
166 2f9l_A RAB11B, member RAS onco 98.9 1.8E-09 6E-14 88.7 4.9 35 183-219 130-164 (199)
167 3kta_A Chromosome segregation 98.8 1.9E-09 6.4E-14 87.4 4.9 107 73-184 18-152 (182)
168 2e87_A Hypothetical protein PH 98.8 4.7E-09 1.6E-13 94.6 7.3 122 81-232 166-293 (357)
169 2xau_A PRE-mRNA-splicing facto 98.8 1.8E-09 6.2E-14 106.6 4.8 139 78-240 105-261 (773)
170 3a00_A Guanylate kinase, GMP k 98.8 1.4E-09 4.8E-14 88.9 1.8 29 82-110 1-29 (186)
171 2ce7_A Cell division protein F 98.8 7.2E-09 2.5E-13 96.8 6.6 114 69-235 38-168 (476)
172 2j41_A Guanylate kinase; GMP, 98.8 4E-09 1.4E-13 86.9 4.0 35 77-111 1-35 (207)
173 3uie_A Adenylyl-sulfate kinase 98.7 6.1E-10 2.1E-14 92.0 -3.0 53 59-113 3-55 (200)
174 2qtf_A Protein HFLX, GTP-bindi 98.7 5.9E-08 2E-12 87.7 9.1 133 81-219 177-350 (364)
175 1fnn_A CDC6P, cell division co 98.7 1.4E-07 4.8E-12 84.7 11.5 126 81-237 41-175 (389)
176 1kgd_A CASK, peripheral plasma 98.6 1.1E-08 3.7E-13 83.2 2.2 34 81-114 4-38 (180)
177 3vaa_A Shikimate kinase, SK; s 98.6 2.2E-08 7.5E-13 82.5 3.2 38 69-106 12-49 (199)
178 4a1f_A DNAB helicase, replicat 98.6 1.3E-07 4.6E-12 84.5 8.3 128 71-229 35-164 (338)
179 4eun_A Thermoresistant glucoki 98.6 2E-08 6.7E-13 82.9 2.4 38 76-117 23-60 (200)
180 3t34_A Dynamin-related protein 98.6 1.7E-07 5.8E-12 84.3 8.7 42 70-114 25-68 (360)
181 4e22_A Cytidylate kinase; P-lo 98.5 1.3E-08 4.3E-13 87.4 0.6 35 80-114 25-62 (252)
182 1w1w_A Structural maintenance 98.5 3.1E-08 1.1E-12 91.3 2.8 49 56-111 7-55 (430)
183 3hr8_A Protein RECA; alpha and 98.5 1.8E-06 6.1E-11 77.7 13.4 36 78-113 57-92 (356)
184 1ixz_A ATP-dependent metallopr 98.5 3.4E-09 1.2E-13 90.5 -4.6 57 55-116 25-81 (254)
185 3tqc_A Pantothenate kinase; bi 98.5 4.2E-09 1.4E-13 93.7 -4.4 135 59-207 64-211 (321)
186 3tau_A Guanylate kinase, GMP k 98.4 8.4E-08 2.9E-12 79.7 3.4 29 80-108 6-34 (208)
187 1iy2_A ATP-dependent metallopr 98.4 5.5E-09 1.9E-13 90.6 -4.0 56 56-116 50-105 (278)
188 2qby_A CDC6 homolog 1, cell di 98.4 1.2E-07 4.3E-12 84.6 4.3 127 80-235 43-177 (386)
189 2vp4_A Deoxynucleoside kinase; 98.4 7E-08 2.4E-12 81.4 2.3 37 76-116 14-50 (230)
190 1rz3_A Hypothetical protein rb 98.4 5.1E-08 1.8E-12 80.5 1.1 37 79-115 19-55 (201)
191 2z43_A DNA repair and recombin 98.4 9.9E-07 3.4E-11 78.3 9.0 148 78-245 103-288 (324)
192 3ney_A 55 kDa erythrocyte memb 98.4 1E-07 3.5E-12 78.9 2.3 32 76-107 13-44 (197)
193 2dy1_A Elongation factor G; tr 98.4 4.9E-08 1.7E-12 94.9 0.3 133 76-233 3-138 (665)
194 3ice_A Transcription terminati 98.4 6.6E-08 2.3E-12 87.5 0.6 52 55-106 133-198 (422)
195 1zu4_A FTSY; GTPase, signal re 98.3 5.9E-08 2E-12 86.2 0.1 44 72-115 95-138 (320)
196 1ega_A Protein (GTP-binding pr 98.3 4.8E-09 1.7E-13 92.4 -7.5 148 81-241 7-169 (301)
197 3kl4_A SRP54, signal recogniti 98.3 1.5E-06 5E-11 80.2 8.7 109 81-217 96-207 (433)
198 2ffh_A Protein (FFH); SRP54, s 98.3 8.3E-07 2.8E-11 81.7 7.1 53 58-115 79-131 (425)
199 1v5w_A DMC1, meiotic recombina 98.3 1.6E-06 5.3E-11 77.7 8.3 28 78-105 118-145 (343)
200 3cr8_A Sulfate adenylyltranfer 98.3 1.2E-07 4.3E-12 90.0 1.0 40 78-117 365-406 (552)
201 3bh0_A DNAB-like replicative h 98.3 8.7E-07 3E-11 78.4 6.3 131 70-229 56-189 (315)
202 1knq_A Gluconate kinase; ALFA/ 98.3 2.3E-07 7.8E-12 74.4 1.9 33 80-116 6-38 (175)
203 1kag_A SKI, shikimate kinase I 98.3 3.2E-07 1.1E-11 73.2 2.6 28 81-108 3-30 (173)
204 2p67_A LAO/AO transport system 98.3 8.8E-09 3E-13 92.3 -7.5 58 56-114 31-88 (341)
205 3b9p_A CG5977-PA, isoform A; A 98.2 8.2E-06 2.8E-10 70.8 11.7 101 81-232 53-170 (297)
206 2qt1_A Nicotinamide riboside k 98.2 7.1E-07 2.4E-11 73.6 3.6 32 76-107 15-46 (207)
207 1f2t_A RAD50 ABC-ATPase; DNA d 98.2 7.1E-07 2.4E-11 70.4 3.4 30 73-103 15-44 (149)
208 3lxx_A GTPase IMAP family memb 98.1 1.6E-05 5.5E-10 66.9 10.6 29 84-112 31-59 (239)
209 1cke_A CK, MSSA, protein (cyti 98.1 3.2E-07 1.1E-11 76.5 -0.7 34 82-115 5-41 (227)
210 4eaq_A DTMP kinase, thymidylat 98.1 1.2E-06 4.1E-11 74.0 2.2 42 72-114 13-57 (229)
211 2pez_A Bifunctional 3'-phospho 98.0 1.5E-06 5.3E-11 69.9 1.6 31 80-111 3-33 (179)
212 2z4s_A Chromosomal replication 98.0 1.2E-05 3.9E-10 74.4 7.4 40 191-230 193-236 (440)
213 2www_A Methylmalonic aciduria 98.0 1.8E-06 6.1E-11 77.5 1.6 35 80-114 72-106 (349)
214 3m6a_A ATP-dependent protease 98.0 1.1E-06 3.7E-11 83.5 0.0 56 58-115 86-141 (543)
215 3qks_A DNA double-strand break 97.9 4.2E-06 1.4E-10 69.3 3.4 30 73-103 15-44 (203)
216 1f6b_A SAR1; gtpases, N-termin 97.9 1.9E-06 6.4E-11 70.5 1.1 42 62-104 6-47 (198)
217 4ad8_A DNA repair protein RECN 97.9 1.9E-06 6.6E-11 81.2 0.7 34 71-105 50-83 (517)
218 1u94_A RECA protein, recombina 97.9 0.00014 4.8E-09 65.3 12.9 27 79-105 60-86 (356)
219 2qag_A Septin-2, protein NEDD5 97.8 1.5E-06 5.2E-11 78.3 -1.4 52 54-112 16-67 (361)
220 1m7g_A Adenylylsulfate kinase; 97.8 3.7E-06 1.3E-10 69.6 1.0 39 77-115 20-60 (211)
221 1y63_A LMAJ004144AAA protein; 97.8 8.1E-06 2.8E-10 66.1 2.9 32 74-105 2-33 (184)
222 1j8m_F SRP54, signal recogniti 97.8 7.7E-07 2.6E-11 78.2 -3.6 54 57-114 76-130 (297)
223 2if2_A Dephospho-COA kinase; a 97.8 8.2E-06 2.8E-10 66.8 2.6 21 84-104 3-23 (204)
224 2dhr_A FTSH; AAA+ protein, hex 97.8 6.1E-06 2.1E-10 77.4 1.6 57 55-116 40-96 (499)
225 3auy_A DNA double-strand break 97.8 2.4E-05 8.3E-10 70.5 5.5 43 56-103 3-46 (371)
226 1m2o_B GTP-binding protein SAR 97.8 1.8E-05 6.2E-10 64.1 4.1 33 71-104 13-45 (190)
227 2gj8_A MNME, tRNA modification 97.7 1.6E-05 5.4E-10 63.4 3.5 27 80-106 2-28 (172)
228 2i1q_A DNA repair and recombin 97.7 4.7E-05 1.6E-09 67.1 6.9 27 78-104 94-120 (322)
229 4fcw_A Chaperone protein CLPB; 97.7 3.5E-05 1.2E-09 67.0 5.9 31 83-113 48-78 (311)
230 2yvu_A Probable adenylyl-sulfa 97.7 7.3E-06 2.5E-10 66.2 1.5 35 79-113 10-44 (186)
231 2qor_A Guanylate kinase; phosp 97.7 1.4E-05 4.9E-10 65.7 3.2 29 79-107 9-37 (204)
232 1sxj_C Activator 1 40 kDa subu 97.7 1E-06 3.5E-11 78.4 -4.6 49 62-111 25-75 (340)
233 1mky_A Probable GTP-binding pr 97.7 3.1E-05 1.1E-09 71.4 5.3 35 84-118 182-228 (439)
234 1njg_A DNA polymerase III subu 97.7 0.00013 4.4E-09 60.0 8.5 42 191-233 125-168 (250)
235 2ohf_A Protein OLA1, GTP-bindi 97.7 2.4E-05 8.2E-10 71.2 4.0 39 79-117 19-68 (396)
236 2zej_A Dardarin, leucine-rich 97.7 2.3E-05 7.8E-10 63.0 3.4 27 84-110 4-30 (184)
237 2wji_A Ferrous iron transport 97.7 3.1E-05 1.1E-09 61.0 4.0 24 84-107 5-28 (165)
238 2q6t_A DNAB replication FORK h 97.6 0.00016 5.4E-09 66.8 8.9 128 71-228 189-317 (444)
239 2ga8_A Hypothetical 39.9 kDa p 97.6 7.8E-06 2.7E-10 73.3 -0.7 37 70-106 10-48 (359)
240 3h4m_A Proteasome-activating n 97.6 0.00011 3.9E-09 63.0 6.7 28 79-106 48-75 (285)
241 1xp8_A RECA protein, recombina 97.6 0.00063 2.2E-08 61.3 11.7 27 78-104 70-96 (366)
242 3t61_A Gluconokinase; PSI-biol 97.6 3.1E-05 1E-09 63.4 2.7 25 82-106 18-42 (202)
243 3cm0_A Adenylate kinase; ATP-b 97.5 3.7E-05 1.3E-09 61.8 2.9 25 80-104 2-26 (186)
244 1q3t_A Cytidylate kinase; nucl 97.5 4.6E-05 1.6E-09 64.1 3.2 26 79-104 13-38 (236)
245 2wjg_A FEOB, ferrous iron tran 97.5 5.7E-05 2E-09 60.4 3.3 22 84-105 9-30 (188)
246 1lv7_A FTSH; alpha/beta domain 97.4 3.5E-05 1.2E-09 65.4 1.8 35 71-107 36-70 (257)
247 1np6_A Molybdopterin-guanine d 97.4 3E-05 1E-09 62.7 1.0 26 83-108 7-32 (174)
248 3kb2_A SPBC2 prophage-derived 97.4 7.4E-05 2.5E-09 58.9 3.2 23 84-106 3-25 (173)
249 1qhx_A CPT, protein (chloramph 97.4 9.9E-05 3.4E-09 58.8 3.6 25 82-106 3-27 (178)
250 3r20_A Cytidylate kinase; stru 97.4 5E-05 1.7E-09 64.2 1.8 23 82-104 9-31 (233)
251 4dcu_A GTP-binding protein ENG 97.4 0.00012 4E-09 67.8 4.2 56 178-234 88-144 (456)
252 2v1u_A Cell division control p 97.4 0.00021 7E-09 63.6 5.7 27 80-106 42-68 (387)
253 1ypw_A Transitional endoplasmi 97.3 6E-05 2.1E-09 74.7 2.1 32 77-108 233-264 (806)
254 3bgw_A DNAB-like replicative h 97.3 0.00082 2.8E-08 62.1 9.6 34 71-104 186-219 (444)
255 1kht_A Adenylate kinase; phosp 97.3 0.00013 4.4E-09 58.5 3.5 24 82-105 3-26 (192)
256 3lw7_A Adenylate kinase relate 97.3 0.00014 4.9E-09 57.1 3.1 19 84-102 3-21 (179)
257 2p5t_B PEZT; postsegregational 97.2 6.3E-05 2.2E-09 64.0 1.0 30 78-107 28-57 (253)
258 2jaq_A Deoxyguanosine kinase; 97.2 0.00016 5.5E-09 58.6 3.2 23 84-106 2-24 (205)
259 1vht_A Dephospho-COA kinase; s 97.2 0.00017 5.7E-09 59.6 3.4 24 81-104 3-26 (218)
260 1gtv_A TMK, thymidylate kinase 97.2 3.7E-05 1.3E-09 63.1 -0.8 25 84-108 2-26 (214)
261 2rhm_A Putative kinase; P-loop 97.2 0.00016 5.3E-09 58.2 3.0 26 80-105 3-28 (193)
262 1ex7_A Guanylate kinase; subst 97.2 0.00016 5.5E-09 59.0 3.0 22 85-106 4-25 (186)
263 1via_A Shikimate kinase; struc 97.2 0.00016 5.4E-09 57.7 2.8 23 84-106 6-28 (175)
264 2ze6_A Isopentenyl transferase 97.2 0.00015 5.3E-09 61.8 2.9 23 84-106 3-25 (253)
265 3dm5_A SRP54, signal recogniti 97.2 0.0034 1.2E-07 57.8 11.8 28 81-108 99-126 (443)
266 2v54_A DTMP kinase, thymidylat 97.2 0.00023 7.9E-09 57.8 3.6 26 81-106 3-28 (204)
267 3iij_A Coilin-interacting nucl 97.2 0.0002 6.9E-09 57.2 3.1 25 80-104 9-33 (180)
268 3k53_A Ferrous iron transport 97.2 0.00019 6.3E-09 61.7 3.1 42 201-242 144-189 (271)
269 3trf_A Shikimate kinase, SK; a 97.2 0.00024 8.1E-09 56.9 3.5 25 81-105 4-28 (185)
270 3io5_A Recombination and repai 97.1 0.0019 6.6E-08 57.0 9.4 120 79-232 26-173 (333)
271 1ly1_A Polynucleotide kinase; 97.1 0.00023 8E-09 56.4 3.3 22 83-104 3-24 (181)
272 2plr_A DTMP kinase, probable t 97.1 0.00027 9.4E-09 57.5 3.4 27 81-107 3-29 (213)
273 1jal_A YCHF protein; nucleotid 97.1 0.00041 1.4E-08 62.4 4.8 36 82-117 2-48 (363)
274 1uf9_A TT1252 protein; P-loop, 97.1 0.00026 8.8E-09 57.4 3.1 24 82-105 8-31 (203)
275 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00016 5.6E-09 65.4 2.1 35 81-115 34-68 (392)
276 2wwf_A Thymidilate kinase, put 97.1 0.00028 9.7E-09 57.6 3.3 26 80-105 8-33 (212)
277 2c95_A Adenylate kinase 1; tra 97.1 0.00031 1E-08 56.6 3.3 26 80-105 7-32 (196)
278 3cf0_A Transitional endoplasmi 97.1 0.00016 5.5E-09 63.1 1.7 30 77-106 44-73 (301)
279 1tev_A UMP-CMP kinase; ploop, 97.0 0.00033 1.1E-08 56.2 3.3 23 82-104 3-25 (196)
280 1nn5_A Similar to deoxythymidy 97.0 0.00033 1.1E-08 57.3 3.3 27 79-105 6-32 (215)
281 1gvn_B Zeta; postsegregational 97.0 0.00026 9E-09 61.5 2.8 27 80-106 31-57 (287)
282 3euj_A Chromosome partition pr 97.0 0.00096 3.3E-08 62.2 6.6 57 57-117 8-64 (483)
283 2z0h_A DTMP kinase, thymidylat 97.0 0.00036 1.2E-08 56.3 3.2 23 84-106 2-24 (197)
284 1nks_A Adenylate kinase; therm 97.0 0.00033 1.1E-08 56.1 2.9 23 84-106 3-25 (194)
285 3ake_A Cytidylate kinase; CMP 97.0 0.00032 1.1E-08 57.0 2.9 23 84-106 4-26 (208)
286 1xjc_A MOBB protein homolog; s 97.0 0.00035 1.2E-08 56.1 2.9 26 83-108 5-30 (169)
287 2ged_A SR-beta, signal recogni 97.0 0.00037 1.3E-08 55.8 2.9 24 83-106 49-72 (193)
288 3b1v_A Ferrous iron uptake tra 97.0 0.00041 1.4E-08 59.9 3.4 23 84-106 5-27 (272)
289 3llm_A ATP-dependent RNA helic 97.0 0.00027 9.4E-09 59.2 2.2 63 175-239 161-228 (235)
290 2vli_A Antibiotic resistance p 96.9 0.00032 1.1E-08 55.9 2.4 25 81-105 4-28 (183)
291 3ihw_A Centg3; RAS, centaurin, 96.9 0.001 3.5E-08 53.3 5.5 28 84-111 22-54 (184)
292 1fzq_A ADP-ribosylation factor 96.9 0.00041 1.4E-08 55.4 2.8 22 84-105 18-39 (181)
293 2bwj_A Adenylate kinase 5; pho 96.9 0.00037 1.3E-08 56.2 2.5 27 79-105 9-35 (199)
294 3q72_A GTP-binding protein RAD 96.9 0.00042 1.4E-08 53.8 2.8 24 84-107 4-27 (166)
295 2nzj_A GTP-binding protein REM 96.9 0.00053 1.8E-08 53.6 3.4 23 84-106 6-28 (175)
296 3cmw_A Protein RECA, recombina 96.9 0.0058 2E-07 64.7 11.9 27 79-105 380-406 (1706)
297 1q57_A DNA primase/helicase; d 96.9 0.012 4.2E-07 54.8 13.1 33 72-104 232-264 (503)
298 2erx_A GTP-binding protein DI- 96.9 0.00058 2E-08 53.1 3.4 22 84-105 5-26 (172)
299 3q85_A GTP-binding protein REM 96.9 0.00057 2E-08 53.2 3.3 23 84-106 4-26 (169)
300 1z2a_A RAS-related protein RAB 96.9 0.00048 1.7E-08 53.4 2.9 22 84-105 7-28 (168)
301 1aky_A Adenylate kinase; ATP:A 96.9 0.00061 2.1E-08 56.3 3.6 25 81-105 3-27 (220)
302 3fb4_A Adenylate kinase; psych 96.9 0.00053 1.8E-08 56.3 3.2 21 84-104 2-22 (216)
303 2dyk_A GTP-binding protein; GT 96.8 0.00054 1.8E-08 52.8 2.9 23 84-106 3-25 (161)
304 3tw8_B RAS-related protein RAB 96.8 0.00057 2E-08 53.7 3.1 23 84-106 11-33 (181)
305 1zd8_A GTP:AMP phosphotransfer 96.8 0.00058 2E-08 56.8 3.2 26 80-105 5-30 (227)
306 2pbr_A DTMP kinase, thymidylat 96.8 0.00059 2E-08 54.7 3.2 22 84-105 2-23 (195)
307 1e6c_A Shikimate kinase; phosp 96.8 0.00054 1.9E-08 54.0 2.8 23 83-105 3-25 (173)
308 2ce2_X GTPase HRAS; signaling 96.8 0.0005 1.7E-08 53.0 2.6 22 84-105 5-26 (166)
309 2lkc_A Translation initiation 96.8 0.00082 2.8E-08 52.8 3.8 25 81-105 7-31 (178)
310 3cmw_A Protein RECA, recombina 96.8 0.0063 2.2E-07 64.4 11.4 30 79-108 729-758 (1706)
311 1kao_A RAP2A; GTP-binding prot 96.8 0.0006 2E-08 52.7 2.9 22 84-105 5-26 (167)
312 1u8z_A RAS-related protein RAL 96.8 0.00059 2E-08 52.7 2.9 22 84-105 6-27 (168)
313 2pt5_A Shikimate kinase, SK; a 96.8 0.00069 2.3E-08 53.2 3.3 22 84-105 2-23 (168)
314 2cdn_A Adenylate kinase; phosp 96.8 0.00077 2.6E-08 54.8 3.6 25 81-105 19-43 (201)
315 1z0j_A RAB-22, RAS-related pro 96.8 0.00062 2.1E-08 52.9 2.9 23 84-106 8-30 (170)
316 3dl0_A Adenylate kinase; phosp 96.8 0.00066 2.2E-08 55.8 3.2 22 84-105 2-23 (216)
317 1z08_A RAS-related protein RAB 96.8 0.00062 2.1E-08 53.0 2.9 22 84-105 8-29 (170)
318 1svi_A GTP-binding protein YSX 96.8 0.00059 2E-08 54.6 2.8 23 83-105 24-46 (195)
319 3pqc_A Probable GTP-binding pr 96.8 0.0006 2.1E-08 54.3 2.8 23 84-106 25-47 (195)
320 1ky3_A GTP-binding protein YPT 96.8 0.00065 2.2E-08 53.4 2.9 23 84-106 10-32 (182)
321 1ek0_A Protein (GTP-binding pr 96.8 0.00065 2.2E-08 52.7 2.9 23 84-106 5-27 (170)
322 1c1y_A RAS-related protein RAP 96.8 0.00067 2.3E-08 52.6 2.9 22 84-105 5-26 (167)
323 1zak_A Adenylate kinase; ATP:A 96.8 0.00062 2.1E-08 56.3 2.8 25 81-105 4-28 (222)
324 3lxw_A GTPase IMAP family memb 96.8 0.00075 2.6E-08 57.1 3.3 24 84-107 23-46 (247)
325 1qf9_A UMP/CMP kinase, protein 96.8 0.00068 2.3E-08 54.2 2.9 24 82-105 6-29 (194)
326 1moz_A ARL1, ADP-ribosylation 96.7 0.00045 1.5E-08 54.7 1.8 23 82-104 18-40 (183)
327 1zuh_A Shikimate kinase; alpha 96.7 0.00085 2.9E-08 52.9 3.4 22 83-104 8-29 (168)
328 1g16_A RAS-related protein SEC 96.7 0.00062 2.1E-08 52.9 2.6 23 84-106 5-27 (170)
329 2cxx_A Probable GTP-binding pr 96.7 0.00068 2.3E-08 53.9 2.8 23 84-106 3-25 (190)
330 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.0007 2.4E-08 53.1 2.9 22 84-105 9-30 (177)
331 1ukz_A Uridylate kinase; trans 96.7 0.00075 2.6E-08 54.9 3.1 24 82-105 15-38 (203)
332 3bos_A Putative DNA replicatio 96.7 0.00088 3E-08 55.3 3.6 27 81-107 51-77 (242)
333 2iyv_A Shikimate kinase, SK; t 96.7 0.00071 2.4E-08 54.1 2.9 22 83-104 3-24 (184)
334 2fn4_A P23, RAS-related protei 96.7 0.00067 2.3E-08 53.3 2.6 22 84-105 11-32 (181)
335 3t1o_A Gliding protein MGLA; G 96.7 0.0008 2.7E-08 53.7 3.1 24 84-107 16-39 (198)
336 2grj_A Dephospho-COA kinase; T 96.7 0.00086 2.9E-08 54.8 3.2 23 83-105 13-35 (192)
337 2hxs_A RAB-26, RAS-related pro 96.7 0.00094 3.2E-08 52.4 3.3 23 84-106 8-30 (178)
338 2oil_A CATX-8, RAS-related pro 96.7 0.0008 2.7E-08 53.9 2.9 22 84-105 27-48 (193)
339 1r2q_A RAS-related protein RAB 96.7 0.00081 2.8E-08 52.1 2.9 22 84-105 8-29 (170)
340 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.00092 3.1E-08 57.0 3.4 25 81-105 3-27 (260)
341 4dsu_A GTPase KRAS, isoform 2B 96.7 0.00082 2.8E-08 53.3 2.9 22 84-105 6-27 (189)
342 1uj2_A Uridine-cytidine kinase 96.7 0.00087 3E-08 56.8 3.2 23 83-105 23-45 (252)
343 1upt_A ARL1, ADP-ribosylation 96.7 0.00084 2.9E-08 52.3 2.9 23 83-105 8-30 (171)
344 3bc1_A RAS-related protein RAB 96.7 0.00083 2.9E-08 53.3 2.9 22 84-105 13-34 (195)
345 3clv_A RAB5 protein, putative; 96.7 0.00085 2.9E-08 53.6 2.9 23 84-106 9-31 (208)
346 3iby_A Ferrous iron transport 96.7 0.00086 2.9E-08 57.2 3.0 23 84-106 3-25 (256)
347 3cbq_A GTP-binding protein REM 96.7 0.00075 2.6E-08 54.7 2.5 22 84-105 25-46 (195)
348 2w58_A DNAI, primosome compone 96.7 0.00069 2.4E-08 55.0 2.3 26 83-108 55-80 (202)
349 1r8s_A ADP-ribosylation factor 96.7 0.00089 3E-08 51.8 2.9 21 84-104 2-22 (164)
350 2xb4_A Adenylate kinase; ATP-b 96.6 0.001 3.6E-08 55.2 3.2 22 84-105 2-23 (223)
351 1wf3_A GTP-binding protein; GT 96.6 0.001 3.5E-08 58.2 3.3 22 84-105 9-30 (301)
352 3con_A GTPase NRAS; structural 96.6 0.00094 3.2E-08 53.3 2.9 22 84-105 23-44 (190)
353 2a9k_A RAS-related protein RAL 96.6 0.00095 3.3E-08 52.7 2.9 22 84-105 20-41 (187)
354 1z0f_A RAB14, member RAS oncog 96.6 0.00097 3.3E-08 52.2 2.9 23 84-106 17-39 (179)
355 2y8e_A RAB-protein 6, GH09086P 96.6 0.00089 3E-08 52.5 2.6 22 84-105 16-37 (179)
356 2g6b_A RAS-related protein RAB 96.6 0.001 3.4E-08 52.4 2.9 23 84-106 12-34 (180)
357 4dhe_A Probable GTP-binding pr 96.6 0.00074 2.5E-08 55.4 2.1 24 83-106 30-53 (223)
358 1a7j_A Phosphoribulokinase; tr 96.6 0.00052 1.8E-08 59.8 1.1 25 81-105 4-28 (290)
359 2f6r_A COA synthase, bifunctio 96.6 0.001 3.4E-08 57.6 2.9 22 83-104 76-97 (281)
360 1ko7_A HPR kinase/phosphatase; 96.6 0.0022 7.4E-08 56.5 5.1 34 70-104 133-166 (314)
361 1ksh_A ARF-like protein 2; sma 96.6 0.0012 4.1E-08 52.4 3.2 26 81-106 17-42 (186)
362 3tlx_A Adenylate kinase 2; str 96.6 0.0012 4.1E-08 55.7 3.3 24 81-104 28-51 (243)
363 2efe_B Small GTP-binding prote 96.6 0.0011 3.8E-08 52.1 2.9 23 84-106 14-36 (181)
364 3cmu_A Protein RECA, recombina 96.6 0.016 5.6E-07 62.2 12.4 133 79-247 380-552 (2050)
365 1nrj_B SR-beta, signal recogni 96.6 0.0011 3.7E-08 54.3 2.9 23 84-106 14-36 (218)
366 3a1s_A Iron(II) transport prot 96.6 0.0013 4.3E-08 56.2 3.4 23 84-106 7-29 (258)
367 3t5d_A Septin-7; GTP-binding p 96.5 0.0011 3.6E-08 57.0 2.9 23 84-106 10-32 (274)
368 2bme_A RAB4A, RAS-related prot 96.5 0.001 3.5E-08 52.7 2.6 22 84-105 12-33 (186)
369 1m7b_A RND3/RHOE small GTP-bin 96.5 0.001 3.6E-08 52.9 2.6 22 84-105 9-30 (184)
370 3iev_A GTP-binding protein ERA 96.5 0.0013 4.3E-08 57.7 3.3 22 84-105 12-33 (308)
371 1vg8_A RAS-related protein RAB 96.5 0.0012 4E-08 53.4 2.9 23 84-106 10-32 (207)
372 2bov_A RAla, RAS-related prote 96.5 0.0012 4E-08 53.3 2.9 22 84-105 16-37 (206)
373 2cjw_A GTP-binding protein GEM 96.5 0.0012 4E-08 53.3 2.9 22 84-105 8-29 (192)
374 1jbk_A CLPB protein; beta barr 96.5 0.0015 5.2E-08 51.5 3.5 26 81-106 42-67 (195)
375 2dby_A GTP-binding protein; GD 96.5 0.001 3.5E-08 59.9 2.7 22 84-105 3-24 (368)
376 2gf9_A RAS-related protein RAB 96.5 0.0012 4.2E-08 52.7 2.9 23 84-106 24-46 (189)
377 3kkq_A RAS-related protein M-R 96.5 0.0016 5.5E-08 51.5 3.5 22 84-105 20-41 (183)
378 2xtp_A GTPase IMAP family memb 96.5 0.0013 4.3E-08 55.8 3.0 23 84-106 24-46 (260)
379 2il1_A RAB12; G-protein, GDP, 96.5 0.0013 4.6E-08 52.8 3.0 23 84-106 28-50 (192)
380 1zbd_A Rabphilin-3A; G protein 96.5 0.0015 5E-08 52.7 3.3 23 84-106 10-32 (203)
381 3tkl_A RAS-related protein RAB 96.5 0.0016 5.6E-08 51.9 3.5 23 84-106 18-40 (196)
382 2fg5_A RAB-22B, RAS-related pr 96.5 0.0012 4E-08 53.1 2.6 23 84-106 25-47 (192)
383 3i8s_A Ferrous iron transport 96.5 0.0013 4.5E-08 56.6 3.1 23 84-106 5-27 (274)
384 1e4v_A Adenylate kinase; trans 96.5 0.0013 4.4E-08 54.1 2.9 22 84-105 2-23 (214)
385 2h57_A ADP-ribosylation factor 96.5 0.0011 3.7E-08 53.1 2.3 23 84-106 23-45 (190)
386 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0013 4.5E-08 51.9 2.9 22 84-105 7-28 (186)
387 4bas_A ADP-ribosylation factor 96.5 0.0015 5E-08 52.4 3.1 22 84-105 19-40 (199)
388 3cnl_A YLQF, putative uncharac 96.5 0.0015 5.3E-08 55.9 3.4 30 83-112 100-129 (262)
389 2gf0_A GTP-binding protein DI- 96.5 0.0012 4.1E-08 52.9 2.6 22 84-105 10-31 (199)
390 1zj6_A ADP-ribosylation factor 96.5 0.0015 5E-08 52.1 3.0 23 83-105 17-39 (187)
391 4edh_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 54.0 3.3 27 81-107 5-31 (213)
392 2o52_A RAS-related protein RAB 96.5 0.0015 5E-08 52.9 3.0 22 84-105 27-48 (200)
393 3llu_A RAS-related GTP-binding 96.4 0.0016 5.6E-08 52.4 3.3 24 84-107 22-45 (196)
394 2qu8_A Putative nucleolar GTP- 96.4 0.0016 5.3E-08 54.0 3.2 22 84-105 31-52 (228)
395 3dz8_A RAS-related protein RAB 96.4 0.0013 4.3E-08 52.7 2.6 23 84-106 25-47 (191)
396 1z06_A RAS-related protein RAB 96.4 0.0015 5E-08 52.2 2.9 22 84-105 22-43 (189)
397 3oes_A GTPase rhebl1; small GT 96.4 0.0013 4.3E-08 53.3 2.6 23 84-106 26-48 (201)
398 2a5j_A RAS-related protein RAB 96.4 0.0015 5E-08 52.4 2.9 23 84-106 23-45 (191)
399 3be4_A Adenylate kinase; malar 96.4 0.0016 5.5E-08 53.7 3.2 25 81-105 4-28 (217)
400 2iwr_A Centaurin gamma 1; ANK 96.4 0.0013 4.3E-08 51.8 2.4 22 84-105 9-30 (178)
401 3v9p_A DTMP kinase, thymidylat 96.4 0.0014 4.6E-08 55.1 2.7 27 80-106 23-49 (227)
402 3t5g_A GTP-binding protein RHE 96.4 0.0014 4.6E-08 51.8 2.6 21 84-104 8-28 (181)
403 3reg_A RHO-like small GTPase; 96.4 0.0015 5.2E-08 52.3 2.9 22 84-105 25-46 (194)
404 2h17_A ADP-ribosylation factor 96.4 0.0014 4.7E-08 52.0 2.6 23 84-106 23-45 (181)
405 2ew1_A RAS-related protein RAB 96.4 0.0014 4.6E-08 53.5 2.6 22 84-105 28-49 (201)
406 3bwd_D RAC-like GTP-binding pr 96.4 0.0016 5.3E-08 51.3 2.9 23 83-105 9-31 (182)
407 2f7s_A C25KG, RAS-related prot 96.4 0.0019 6.4E-08 52.8 3.4 23 84-106 27-49 (217)
408 1zd9_A ADP-ribosylation factor 96.4 0.0016 5.4E-08 52.1 2.9 22 84-105 24-45 (188)
409 1l8q_A Chromosomal replication 96.4 0.0014 4.8E-08 57.4 2.7 28 81-108 36-63 (324)
410 2atv_A RERG, RAS-like estrogen 96.4 0.0016 5.6E-08 52.3 2.9 22 84-105 30-51 (196)
411 2q3h_A RAS homolog gene family 96.4 0.0019 6.6E-08 52.0 3.3 23 83-105 21-43 (201)
412 2wsm_A Hydrogenase expression/ 96.4 0.0014 4.9E-08 53.7 2.6 24 83-106 31-54 (221)
413 3lv8_A DTMP kinase, thymidylat 96.4 0.0019 6.4E-08 54.6 3.3 27 81-107 26-52 (236)
414 1x3s_A RAS-related protein RAB 96.4 0.0017 5.7E-08 51.7 2.9 22 84-105 17-38 (195)
415 1qvr_A CLPB protein; coiled co 96.4 0.0031 1.1E-07 62.8 5.4 26 83-108 589-614 (854)
416 2p5s_A RAS and EF-hand domain 96.4 0.0017 5.8E-08 52.4 2.9 24 83-106 29-52 (199)
417 1ltq_A Polynucleotide kinase; 96.4 0.0018 6.3E-08 55.9 3.3 22 83-104 3-24 (301)
418 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0015 5.3E-08 52.8 2.6 22 84-105 10-31 (206)
419 1jwy_B Dynamin A GTPase domain 96.3 0.0017 6E-08 56.4 3.1 23 84-106 26-48 (315)
420 2j1l_A RHO-related GTP-binding 96.3 0.0019 6.4E-08 52.9 3.1 22 84-105 36-57 (214)
421 3cph_A RAS-related protein SEC 96.3 0.0017 6E-08 52.6 2.9 23 83-105 21-43 (213)
422 2p65_A Hypothetical protein PF 96.3 0.0019 6.5E-08 50.9 3.0 26 81-106 42-67 (187)
423 3d3q_A TRNA delta(2)-isopenten 96.3 0.0019 6.4E-08 57.5 3.2 24 83-106 8-31 (340)
424 3c5c_A RAS-like protein 12; GD 96.3 0.0019 6.4E-08 51.7 2.9 22 84-105 23-44 (187)
425 4tmk_A Protein (thymidylate ki 96.3 0.0021 7.3E-08 53.3 3.3 27 81-107 2-28 (213)
426 1ak2_A Adenylate kinase isoenz 96.3 0.0024 8.1E-08 53.3 3.6 26 81-106 15-40 (233)
427 1gwn_A RHO-related GTP-binding 96.3 0.0016 5.6E-08 53.1 2.6 22 84-105 30-51 (205)
428 2fv8_A H6, RHO-related GTP-bin 96.3 0.0017 5.9E-08 52.8 2.6 23 84-106 27-49 (207)
429 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0018 6E-08 60.1 2.9 36 71-107 141-176 (473)
430 2fh5_B SR-beta, signal recogni 96.3 0.0026 8.9E-08 51.7 3.7 23 84-106 9-31 (214)
431 3zvl_A Bifunctional polynucleo 96.3 0.0022 7.5E-08 58.6 3.5 27 79-105 255-281 (416)
432 1sxj_D Activator 1 41 kDa subu 96.3 0.00064 2.2E-08 59.9 -0.1 40 192-232 133-174 (353)
433 2fu5_C RAS-related protein RAB 96.3 0.0013 4.6E-08 51.9 1.8 22 84-105 10-31 (183)
434 2b6h_A ADP-ribosylation factor 96.3 0.0019 6.6E-08 51.9 2.8 23 83-105 30-52 (192)
435 2g3y_A GTP-binding protein GEM 96.3 0.0024 8.2E-08 52.8 3.4 22 84-105 39-60 (211)
436 2j9r_A Thymidine kinase; TK1, 96.3 0.0044 1.5E-07 51.5 4.9 52 192-245 101-162 (214)
437 2h92_A Cytidylate kinase; ross 96.3 0.0022 7.7E-08 52.6 3.1 25 82-106 3-27 (219)
438 2ocp_A DGK, deoxyguanosine kin 96.2 0.0023 8E-08 53.6 3.1 25 82-106 2-26 (241)
439 3def_A T7I23.11 protein; chlor 96.2 0.0023 7.9E-08 54.5 3.1 23 84-106 38-60 (262)
440 2gco_A H9, RHO-related GTP-bin 96.2 0.002 6.8E-08 52.1 2.6 23 84-106 27-49 (201)
441 3tmk_A Thymidylate kinase; pho 96.2 0.0026 9E-08 52.9 3.3 33 80-113 3-35 (216)
442 2qmh_A HPR kinase/phosphorylas 96.2 0.0035 1.2E-07 51.6 4.0 35 70-105 23-57 (205)
443 1ypw_A Transitional endoplasmi 96.2 0.00072 2.5E-08 67.0 -0.2 33 75-107 504-536 (806)
444 2aka_B Dynamin-1; fusion prote 96.2 0.0022 7.4E-08 55.2 2.8 23 84-106 28-50 (299)
445 3ld9_A DTMP kinase, thymidylat 96.2 0.0028 9.5E-08 53.1 3.3 28 80-107 19-46 (223)
446 3cmu_A Protein RECA, recombina 96.2 0.021 7E-07 61.4 10.6 27 78-104 1423-1449(2050)
447 1h65_A Chloroplast outer envel 96.2 0.0024 8.3E-08 54.5 3.0 23 84-106 41-63 (270)
448 2atx_A Small GTP binding prote 96.2 0.0022 7.6E-08 51.2 2.6 22 84-105 20-41 (194)
449 3exa_A TRNA delta(2)-isopenten 96.2 0.0028 9.6E-08 55.8 3.4 25 82-106 3-27 (322)
450 3crm_A TRNA delta(2)-isopenten 96.2 0.0027 9.3E-08 56.1 3.2 24 83-106 6-29 (323)
451 4djt_A GTP-binding nuclear pro 96.1 0.0013 4.3E-08 53.8 0.9 23 84-106 13-35 (218)
452 2r62_A Cell division protease 96.1 0.00059 2E-08 58.0 -1.2 32 72-105 36-67 (268)
453 3a8t_A Adenylate isopentenyltr 96.1 0.0036 1.2E-07 55.6 3.9 31 81-114 39-69 (339)
454 2hf9_A Probable hydrogenase ni 96.1 0.0025 8.7E-08 52.4 2.6 23 84-106 40-62 (226)
455 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0033 1.1E-07 52.8 3.3 26 81-106 38-63 (262)
456 1p5z_B DCK, deoxycytidine kina 96.1 0.002 6.7E-08 54.8 1.8 27 80-106 22-48 (263)
457 2x77_A ADP-ribosylation factor 96.0 0.002 7E-08 51.3 1.8 23 83-105 23-45 (189)
458 2hup_A RAS-related protein RAB 96.0 0.0028 9.6E-08 51.3 2.6 22 84-105 31-52 (201)
459 2zts_A Putative uncharacterize 96.0 0.0047 1.6E-07 51.3 4.0 25 79-103 27-51 (251)
460 2yc2_C IFT27, small RAB-relate 96.0 0.0013 4.6E-08 52.9 0.6 22 84-105 22-43 (208)
461 3cpj_B GTP-binding protein YPT 96.0 0.0033 1.1E-07 51.7 2.9 23 84-106 15-37 (223)
462 3q3j_B RHO-related GTP-binding 96.0 0.0033 1.1E-07 51.6 2.9 22 84-105 29-50 (214)
463 4gzl_A RAS-related C3 botulinu 96.0 0.003 1E-07 51.3 2.6 22 83-104 31-52 (204)
464 4hlc_A DTMP kinase, thymidylat 96.0 0.004 1.4E-07 51.3 3.3 26 82-107 2-27 (205)
465 3foz_A TRNA delta(2)-isopenten 95.9 0.0043 1.5E-07 54.5 3.4 25 82-106 10-34 (316)
466 3umf_A Adenylate kinase; rossm 95.9 0.0044 1.5E-07 51.6 3.2 26 79-104 26-51 (217)
467 3n70_A Transport activator; si 95.9 0.005 1.7E-07 47.4 3.3 28 80-107 22-49 (145)
468 2orv_A Thymidine kinase; TP4A 95.9 0.0089 3E-07 50.2 5.0 52 191-245 89-150 (234)
469 2orw_A Thymidine kinase; TMTK, 95.9 0.0049 1.7E-07 49.8 3.3 53 191-245 75-137 (184)
470 2j0v_A RAC-like GTP-binding pr 95.9 0.0037 1.3E-07 50.8 2.6 22 84-105 11-32 (212)
471 2chg_A Replication factor C sm 95.8 0.005 1.7E-07 49.7 3.0 41 191-232 101-143 (226)
472 3sr0_A Adenylate kinase; phosp 95.7 0.0059 2E-07 50.3 3.2 22 84-105 2-23 (206)
473 3r7w_A Gtpase1, GTP-binding pr 95.6 0.0067 2.3E-07 52.9 3.4 25 82-106 3-27 (307)
474 2v3c_C SRP54, signal recogniti 95.6 0.0027 9.2E-08 58.4 0.9 26 83-108 100-125 (432)
475 3tqf_A HPR(Ser) kinase; transf 95.6 0.0099 3.4E-07 47.8 4.1 34 70-104 5-38 (181)
476 3syl_A Protein CBBX; photosynt 95.6 0.0067 2.3E-07 52.3 3.3 26 81-106 66-91 (309)
477 1puj_A YLQF, conserved hypothe 95.6 0.0079 2.7E-07 52.0 3.7 27 83-109 121-147 (282)
478 3eph_A TRNA isopentenyltransfe 95.5 0.0065 2.2E-07 55.2 3.1 23 83-105 3-25 (409)
479 1wxq_A GTP-binding protein; st 95.5 0.0064 2.2E-07 55.2 3.1 67 153-228 181-250 (397)
480 3gj0_A GTP-binding nuclear pro 95.5 0.0042 1.4E-07 50.9 1.6 39 181-219 165-208 (221)
481 2hjg_A GTP-binding protein ENG 95.5 0.0059 2E-07 56.0 2.7 22 84-105 5-26 (436)
482 3th5_A RAS-related C3 botulinu 94.5 0.0024 8.2E-08 51.6 0.0 23 83-105 31-53 (204)
483 3pvs_A Replication-associated 95.5 0.0037 1.3E-07 57.7 1.3 36 73-108 39-76 (447)
484 1d2n_A N-ethylmaleimide-sensit 95.4 0.0073 2.5E-07 51.4 3.0 25 81-105 63-87 (272)
485 2qgz_A Helicase loader, putati 95.4 0.009 3.1E-07 52.2 3.6 25 82-106 152-176 (308)
486 3p32_A Probable GTPase RV1496/ 95.4 0.0069 2.4E-07 54.0 2.9 25 82-106 79-103 (355)
487 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0091 3.1E-07 52.8 3.5 28 77-104 118-145 (331)
488 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0095 3.3E-07 52.3 3.6 27 80-106 43-69 (322)
489 3l0i_B RAS-related protein RAB 95.4 0.0015 5E-08 52.8 -1.6 23 84-106 35-57 (199)
490 1ofh_A ATP-dependent HSL prote 95.3 0.009 3.1E-07 51.3 3.2 25 82-106 50-74 (310)
491 3l0o_A Transcription terminati 95.3 0.0048 1.6E-07 55.9 1.4 32 74-105 167-198 (427)
492 2x2e_A Dynamin-1; nitration, h 95.3 0.0059 2E-07 54.3 2.0 23 84-106 33-55 (353)
493 3t15_A Ribulose bisphosphate c 95.3 0.0089 3E-07 51.8 3.0 24 83-106 37-60 (293)
494 3hws_A ATP-dependent CLP prote 95.3 0.0094 3.2E-07 53.0 3.2 25 82-106 51-75 (363)
495 3uk6_A RUVB-like 2; hexameric 95.2 0.0098 3.3E-07 52.6 3.2 28 80-107 68-95 (368)
496 2qby_B CDC6 homolog 3, cell di 95.2 0.01 3.5E-07 52.6 3.3 25 82-106 45-69 (384)
497 3gmt_A Adenylate kinase; ssgci 95.2 0.011 3.7E-07 49.7 3.2 22 83-104 9-30 (230)
498 3eie_A Vacuolar protein sortin 95.2 0.012 4E-07 51.6 3.5 25 81-105 50-74 (322)
499 1lnz_A SPO0B-associated GTP-bi 95.2 0.011 3.7E-07 52.6 3.3 33 73-105 149-181 (342)
500 3d8b_A Fidgetin-like protein 1 95.2 0.011 3.9E-07 52.5 3.5 27 80-106 115-141 (357)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-53 Score=374.83 Aligned_cols=204 Identities=27% Similarity=0.430 Sum_probs=172.8
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-------------e
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------R 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------~ 120 (266)
++|+++||+++|+++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 479999999999655569999999999999999999999999999999999999999999988742 4
Q ss_pred EEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
++|++|++...+. ..++.+++.. ...... .+++.++++.+++. ...++++.+|||||||||+|||||+.+|+
T Consensus 86 ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 86 IGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp EEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999998632222 3455554432 111222 34678899999997 46788999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+|||||||+|||+.++..+++.+++ .+.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 232 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVF 232 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHT
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999988877754 3679999999999999999999999999997 678888764
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.4e-53 Score=363.17 Aligned_cols=202 Identities=24% Similarity=0.334 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
+|+++||+++|+++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 58999999999632 35899999999999999999999999999999999999999999998874
Q ss_pred --eeEEEEeccccCCCCCCCcHHHHHHH--hCC---CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFP---GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
..++|++|++.. ....++.+++.. ... .. ..+++.++++.+++.+...++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFNL--IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCCC--CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCcc--CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 149999998642 223345554422 111 11 13457788999999754457899999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+.+|++|||||||++||+.++..+++.+++. +.|||+||||++.+ .+||++++|++|+++ ..++.+++.
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~-~~~~~~~~~ 233 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE-REEKLRGFD 233 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEECC---
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEcChhhhc
Confidence 999999999999999999999999988877643 67999999999965 689999999999996 466666653
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9e-53 Score=380.90 Aligned_cols=205 Identities=21% Similarity=0.296 Sum_probs=172.2
Q ss_pred CCCcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------
Q 024529 52 GPPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------- 118 (266)
..++|+++||++.|+++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45689999999999532 35899999999999999999999999999999999999999999998874
Q ss_pred ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529 119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra 188 (266)
..+||+||++. +....++.+++... .... ..+++.++|+.+|+.+ ..++++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHH
Confidence 24999999864 23334555444221 1122 2356788999999975 5678999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|+.+|++|||||||++||+.+...+++.|++. +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~ 252 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF 252 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999888877643 679999999999999999999999999997 678887753
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.1e-52 Score=364.83 Aligned_cols=202 Identities=22% Similarity=0.260 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-------------e
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------R 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------~ 120 (266)
++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999994 4579999999999999999999999999999999999999999999987731 3
Q ss_pred EEEEeccccCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
++|++|++.. ....++.+++.. ...... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus 102 i~~v~Q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 102 VGMVFQRFNL--FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-KAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp EEEECSSCCC--CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCcC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 8999998632 223344444322 111222 346788999999974 567889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|||||||++||+.++..+++.|++. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999988877653 679999999999999999999999999996 568887764
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-52 Score=363.63 Aligned_cols=202 Identities=22% Similarity=0.310 Sum_probs=169.8
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------- 119 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------- 119 (266)
++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..
T Consensus 5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4799999999994 5579999999999999999999999999999999999999999999987631
Q ss_pred ----------eEEEEeccccCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCccc-ccCCCCCCChHHHH
Q 024529 120 ----------RIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNL-ALQPMYTLSGGQKS 181 (266)
Q Consensus 120 ----------~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkq 181 (266)
.++|++|++.. ....++.+++.. ...... .+++.++++.+++.+ . .++++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNL--WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCC--CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHHHH
T ss_pred ChhhHHHHhcceEEEecCccc--CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhcCCcccCCHHHHH
Confidence 38999998532 223345444322 111222 346788999999974 4 67889999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
||+|||||+.+|++|||||||+|||+.++..+++.|++. +.|||+||||++++..+||++++|++|+++ ..|++++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQ 239 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999999999999999988877643 679999999999999999999999999996 5688777
Q ss_pred HH
Q 024529 259 YK 260 (266)
Q Consensus 259 ~~ 260 (266)
+.
T Consensus 240 ~~ 241 (262)
T 1b0u_A 240 VF 241 (262)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.8e-52 Score=376.48 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=173.0
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------ee
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~ 120 (266)
++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++ ..
T Consensus 3 ~~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 3699999999994 567999999999999999999999999999999999999999999998764 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCC--C----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFP--G----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
+||++|++. +....++.+++..... . ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 82 ig~vfQ~~~--l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 82 LGYLVQEGV--LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-LAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp CEEECTTCC--CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999864 3334566666543211 1 12456888999999974 6788999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|||||||++||+..+..+++.+. +.+.|+|+||||++++..+||||++|++|+++ ..|+++++..
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~ 228 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYR 228 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHh
Confidence 999999999999999888876543 34779999999999999999999999999997 6788887643
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.2e-52 Score=365.49 Aligned_cols=202 Identities=25% Similarity=0.354 Sum_probs=173.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~ 122 (266)
++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .++
T Consensus 10 ~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred ceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5899999999994 5679999999999999999999999999999999999999999999998752 489
Q ss_pred EEeccccCCCCCCCcHHHHHHHh---C-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc------C
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC---F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------K 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~------~ 192 (266)
|++|++.. ....++.+++... . .....+++.++++.+++.+ ..++++.+|||||||||+|||||+. +
T Consensus 89 ~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 89 VMRQYSEL--AFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EECSCCCC--CSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEecCCcc--CCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 99998643 2334555555322 1 1234567889999999974 5678899999999999999999999 9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|++|||||||+|||+.++..+++.|++. + .|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~ 236 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVL 236 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 9999999999999999999988877653 3 49999999999999999999999999997 678887763
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.9e-52 Score=354.79 Aligned_cols=196 Identities=22% Similarity=0.320 Sum_probs=163.9
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 118 (266)
++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4799999999995 467999999999999999999999999999999999999999999998763
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHH---hCCC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
..++|++|++.. ....++.+++.. .... ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus 82 ~~i~~v~q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 82 RKLGFVFQFHYL--IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHEEEECSSCCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcEEEEecCccc--CCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 249999998632 223344444321 1111 12356788999999974 56788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~ 255 (266)
|++|||||||++||+.++..+++.+++. +.|||+||||++++ .+||++++|++|+++ +.|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~-~~g~ 222 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVV-GEIT 222 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEee
Confidence 9999999999999999999888877643 67999999999998 799999999999996 4553
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-52 Score=361.59 Aligned_cols=205 Identities=21% Similarity=0.274 Sum_probs=171.1
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eE
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RI 121 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i 121 (266)
..++|+++||+++|+ +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .+
T Consensus 12 ~~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp --CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred cCCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 356899999999994 5679999999999999999999999999999999999999999999988742 49
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++.. ....++.+++... ..... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 91 ~~v~q~~~l--~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 91 SYLPEEAGA--YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp EEECTTCCC--CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEcCCCCC--CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999998642 2233444443211 11111 246788999999974 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|||||||++||+.++..+++.|.+. +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 235 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKE 235 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHH
Confidence 9999999999999999988877653 579999999999999999999999999996 5688777654
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.4e-52 Score=357.15 Aligned_cols=202 Identities=19% Similarity=0.247 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------eE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------RI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i 121 (266)
++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .+
T Consensus 5 ~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 5 IVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4799999999995 4579999999999999999999999999999999999999999999987741 39
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhC-C--CC--cHHHHHHHHHhcC-CCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCF-P--GV--PEQKLRAHLGSFG-VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++. +....+..+++.... . .. ..+.+.++++.++ +.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 84 ~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 84 ALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp EEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecCCc--cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-HhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999863 222335555553211 1 11 1345677888884 854 56788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||++||+.++..+++.|++. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 227 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL 227 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 9999999999999999988887653 579999999999999999999999999996 567777653
No 11
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.2e-52 Score=377.08 Aligned_cols=201 Identities=23% Similarity=0.331 Sum_probs=171.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
+|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++ ..++|++
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 599999999994 567999999999999999999999999999999999999999999998875 3599999
Q ss_pred ccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++. +....++.+++... ..... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 82 QSYA--LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp TTCC--CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCCc--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9874 33334555544221 11222 356888999999974 577899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||++||+..+..+.+.|++ .+.|+|+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEeCHHHHH
Confidence 99999999999888877754 3779999999999999999999999999997 578887764
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.4e-51 Score=372.64 Aligned_cols=206 Identities=27% Similarity=0.363 Sum_probs=173.0
Q ss_pred CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeE
Q 024529 51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRI 121 (266)
Q Consensus 51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i 121 (266)
.+.++|+++|++++|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++ ..+
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 35678999999999933456899999999999999999999999999999999999999999998874 259
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 195 (266)
+|++|++.. ....++.+++... ..... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 90 g~v~Q~~~l--~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 90 GLVFQNYAL--FQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp EEECGGGCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecCccc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999998642 2333454443211 11222 356888999999974 56789999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||||++||+..+..+.+.|++ .+.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999988887754 3679999999999999999999999999996 568887764
No 13
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.1e-52 Score=367.85 Aligned_cols=205 Identities=22% Similarity=0.329 Sum_probs=170.9
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------- 118 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------- 118 (266)
..++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 345899999999995 457999999999999999999999999999999999999999999998763
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHHhC-------CCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCF-------PGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra 188 (266)
..++|++|++...+....++.+++.... ... ..+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA-KAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHH
Confidence 2489999986322222335555543211 011 1346788999999964 5678999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEE--EEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGI--LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~ti--iivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|+.+|++|||||||+|||+.++..+++.|++. +.|| |+||||++++..+||++++|++|+++ +.|+++++
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999999999988887654 6789 99999999999999999999999996 56877765
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.6e-52 Score=363.44 Aligned_cols=200 Identities=19% Similarity=0.253 Sum_probs=169.2
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------eE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------RI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i 121 (266)
++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .+
T Consensus 6 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 6 EILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999995 4579999999999999999999999999999999999999999999987731 49
Q ss_pred EEEeccccCCCCCCCcHHHHHHHh--C--CC-----------C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRC--F--PG-----------V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 182 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-----------~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR 182 (266)
+|++|++.. ....++.+++... . .. . ..+++.++++.+++.+ ..++++.+||||||||
T Consensus 85 ~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 85 VRTFQTPQP--LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKL 161 (257)
T ss_dssp EECCCCCGG--GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH
T ss_pred EEEccCCcc--CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-hhCCCchhCCHHHHHH
Confidence 999998632 2223455544321 1 01 1 1346788999999974 5678999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 258 (266)
|+|||||+.+|++|||||||+|||+.++..+++.|++. +.|||+||||++++..+||++++|++|+++ +.|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEeCHHH
Confidence 99999999999999999999999999999988887653 679999999999999999999999999996 5677777
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-51 Score=369.51 Aligned_cols=201 Identities=21% Similarity=0.281 Sum_probs=172.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 589999999994 557899999999999999999999999999999999999999999998874 2599999
Q ss_pred ccccCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++.. ....++.+++.... .... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 82 QNYAL--YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp SSCCC--CTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 98642 33445666654321 1222 246888999999974 567899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||++||+..+..+.+.|++. +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~ 222 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV-QYGTPDEVY 222 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999888877543 679999999999999999999999999996 568887764
No 16
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-51 Score=357.72 Aligned_cols=205 Identities=25% Similarity=0.411 Sum_probs=171.8
Q ss_pred cEEEEeeEEEcC-CC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEE
Q 024529 55 IISFSDASFGYP-GG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~-~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~ 122 (266)
+|+++|++++|+ ++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.. .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 689999999995 23 468999999999999999999999999999999999999999999998742 499
Q ss_pred EEeccccCCCCCCCcHHHHHHHhC----C-CCcHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCF----P-GVPEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
|++|++...+ ...+..+++.... . ....+++.++++.+++.. ...++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999852111 2345555543321 1 123567889999999971 3467889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
||||||++||+.++..+++.|++. +.|||+||||++++..+||++++|++|+++ ..|+.+++..
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 227 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFLE 227 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 999999999999999988887653 579999999999999999999999999996 5788777643
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.6e-51 Score=354.18 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=167.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (266)
+|+++|++++|+++..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|... ..++|++|++... .
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~--~ 79 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSP--F 79 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCS--S
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccC--C
Confidence 69999999999525679999999999999999999999999999999999999999999843 4699999986422 2
Q ss_pred CCcHHHHHHHhC----C-----C-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529 135 SSNPLLYMMRCF----P-----G-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204 (266)
Q Consensus 135 ~~~~~~~~~~~~----~-----~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~ 204 (266)
..++.+++.... . . ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 345555543211 0 1 12356788999999974 56788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 205 LDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 205 LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
||+.++..+++.|.+. +.|||+||||++++..+||++++|++|+ + +.|+++++
T Consensus 159 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI 215 (253)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence 9999999988887653 6799999999999999999999999999 5 56777665
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.4e-51 Score=368.72 Aligned_cols=201 Identities=25% Similarity=0.315 Sum_probs=170.8
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++ ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 599999999994 567999999999999999999999999999999999999999999998874 2599999
Q ss_pred ccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++.. ....++.+++... .... ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 82 QNWAL--YPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp TTCCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 98642 2333454444221 1112 1356788999999974 567899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||++||+..+..+.+.|++. +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999888877543 679999999999999999999999999996 568887764
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.3e-51 Score=368.45 Aligned_cols=200 Identities=26% Similarity=0.300 Sum_probs=169.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------eEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~i~~~~ 125 (266)
||+++|++++|+ +. +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++. .++|++
T Consensus 1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 589999999995 45 9999999999999999999999999999999999999999999998742 489999
Q ss_pred ccccCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 126 QHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
|++.. ....++.+++.. .......+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~~l--~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 79 QNYSL--FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp TTCCC--CTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCccc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 98642 223344444321 111112277889999999974 567899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 203 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++||+..+..+.+.|++. +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~ 216 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIF 216 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999888877543 679999999999999999999999999996 568877764
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-51 Score=350.49 Aligned_cols=198 Identities=25% Similarity=0.346 Sum_probs=167.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
||+++|++++|+ + +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.+++. ..++|++
T Consensus 1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 478999999994 3 49999999999 999999999999999999999999999999998874 2589999
Q ss_pred ccccCCCCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529 126 QHHVDGLDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 201 (266)
|++. +....+..+++..... . ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||||
T Consensus 77 q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred CCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9863 2223355555533211 1 12456788999999974 56788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 202 SNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 202 t~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|+|||+.++..+++.+.+. +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999988877643 679999999999999999999999999996 578887764
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.9e-51 Score=368.69 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=171.2
Q ss_pred cEEEEeeEEEcCCCCc--ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529 55 IISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 118 (266)
+|+++|++++|+ +.. +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++
T Consensus 3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 699999999994 456 899999999999999999999999999999999999999999988763
Q ss_pred eeEEEEeccccCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
..++|++|++. +....++.+++.... .... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus 82 r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 82 RKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp SCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 24899999864 233445666554321 1222 356788999999974 56789999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|++|||||||++||+..+..+.+.|++ .+.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999999988887754 3679999999999999999999999999996 568887764
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.8e-50 Score=368.12 Aligned_cols=201 Identities=24% Similarity=0.317 Sum_probs=169.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------e
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~ 119 (266)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++ .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 589999999994 557999999999999999999999999999999999999999999998763 2
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
.++|++|++.. ....++.+++... ..... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 82 DIAMVFQSYAL--YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SEEEECSCCCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 48999998642 2334454443221 11222 356788999999974 567899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|||||||++||+..+..+.+.|++ .+.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999999988887754 3679999999999999999999999999996 568887764
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-50 Score=359.40 Aligned_cols=203 Identities=26% Similarity=0.375 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
..|+++||+|+|+++..+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 46999999999975667999999999999999999999999999999999999999999999875 2599
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++.. +..+..+++.........+++.++++.+++.+.. ...++.+|||||||||+|||||+.+
T Consensus 132 ~v~Q~~~l---f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 132 VVPQDTVL---FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EECSSCCC---CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEecCCcc---CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 99998742 2346777765433334566677777776664322 2345679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|+||||||||++||+.+...+.+.|.+. +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv-~~G~~~el~~ 277 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIV-ERGRHEALLS 277 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999998888764 5799999999999986 9999999999997 6788887654
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.8e-50 Score=348.65 Aligned_cols=201 Identities=24% Similarity=0.423 Sum_probs=166.9
Q ss_pred cEEEEeeEEEcC-CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 55 IISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 55 ~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
-++++||+++|+ ++..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 489999999994 3457999999999999999999999999999999999999999999998874 2499
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++.. + ..++.+++.........+++.++++.+++.+.. .++++.+|||||||||+|||||+.+
T Consensus 87 ~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 87 VVLQDNVL-L--NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EECSSCCC-T--TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCcc-c--cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99998642 2 236666664322233456677778877775322 2345689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|++|||||||++||+.++..+++.|.+. +.|||+||||++.+. .||++++|++|+++ ..|+++++.
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999998888754 679999999999987 49999999999997 567776653
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.6e-50 Score=368.09 Aligned_cols=201 Identities=21% Similarity=0.298 Sum_probs=169.4
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~ 125 (266)
+|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++ ..++|++
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 599999999994 556899999999999999999999999999999999999999999998874 2599999
Q ss_pred ccccCCCCCCCcHHHHHHHhCC--CCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 126 QHHVDGLDLSSNPLLYMMRCFP--GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 126 q~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
|++.. ....++.+++..... ... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 90 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 90 QSYAV--WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 98642 334456666543211 122 346788999999974 567899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||++||+..+..+.+.|++. +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999888877543 679999999999999999999999999996 568887764
No 26
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-50 Score=353.24 Aligned_cols=199 Identities=19% Similarity=0.324 Sum_probs=171.2
Q ss_pred cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------eeEE-
Q 024529 55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIA- 122 (266)
Q Consensus 55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~- 122 (266)
||+++|++++|++. +.+|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 58999999999531 569999999999 9999999999999999999999999 99999998874 2589
Q ss_pred EEeccccCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 200 (266)
|++|++.. ..+..+++... ......+++.++++.+++.....++++.+||||||||++|||||+.+|++|||||
T Consensus 79 ~v~Q~~~l----~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 79 NLPEAYEI----GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp CCGGGSCT----TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCCcc----CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99998642 34554444221 1134567789999999997235678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcC-EEEEEeCCeEEecCCChhHHH
Q 024529 201 PSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE-ELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||++||+.++..+++.|++...|||+||||++++..+|| ++++|++|+++ ..|+++++.
T Consensus 155 Pts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~ 214 (263)
T 2pjz_A 155 PFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELL 214 (263)
T ss_dssp TTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHH
T ss_pred CccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHH
Confidence 999999999999999998875599999999999999999 99999999996 678888764
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-50 Score=349.69 Aligned_cols=202 Identities=22% Similarity=0.355 Sum_probs=167.2
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 123 (266)
||+++|++++|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 4899999999954457999999999999999999999999999999999999999999998763 24899
Q ss_pred EeccccCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHccC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
++|++.. + ..+..+++... ......+++.++++.+++.+... ++++.+|||||||||+|||||+.+
T Consensus 81 v~q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 81 VSQDSAI-M--AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp ECCSSCC-C--CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCCcc-c--cccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 9998642 2 23566655322 12344567888888888864322 235679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|++|||||||++||+.++..+++.|.+. +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999888888777653 679999999999886 59999999999996 6788877643
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3e-50 Score=352.17 Aligned_cols=204 Identities=21% Similarity=0.353 Sum_probs=166.5
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCee-----------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV----------- 119 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~----------- 119 (266)
.++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++..
T Consensus 18 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 45799999999994 56799999999999999999999999999999999999 47899999988742
Q ss_pred -eEEEEeccccCCCCCCCcHHHHHHH---------hCCCCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHH
Q 024529 120 -RIAVFSQHHVDGLDLSSNPLLYMMR---------CFPGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVA 184 (266)
Q Consensus 120 -~i~~~~q~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~ 184 (266)
.++|++|++... ...+..+++.. ...... .+++.++++.+++.....++++. +|||||||||+
T Consensus 97 ~~i~~v~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 97 EGIFMAFQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HTEEEECSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred CCEEEEccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 389999986422 22233332211 111111 24678899999996445667776 59999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChhHHH
Q 024529 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
|||||+.+|+||||||||++||+.++..+++.|++. +.|||+||||++++..+ ||++++|++|+++ ..|+++++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 253 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLVK 253 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999999999999999999999998765 46999999999999876 9999999999996 578877764
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.3e-49 Score=347.27 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=165.8
Q ss_pred CCcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------
Q 024529 53 PPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------- 119 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------- 119 (266)
..+|+++||++.|++ ...+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 357999999999964 2569999999999999999999999999999999999999999999998742
Q ss_pred eEEEEeccccCCCCCCCcHHHHHHHhCCCCcH-H---------HHHHHHHhc--CCCcccccCCCCCCChHHHHHHHHHH
Q 024529 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-Q---------KLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
.++|++|++.. + ..++.+++......... . .+.++++.+ ++.. ..++++.+|||||||||+|||
T Consensus 94 ~i~~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 94 QVAAVGQEPLL-F--GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HEEEECSSCCC-C--SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHH
T ss_pred cEEEEecCCcc-c--cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHH
Confidence 49999998642 2 23666666432211111 1 123456666 5643 456788999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
||+.+|+||||||||++||+.++..+++.|.+. +.|||+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~ 244 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC-EQGTHLQLM 244 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE-EEECHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999999999988764 4699999999999875 9999999999996 568877764
No 30
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.5e-49 Score=337.51 Aligned_cols=199 Identities=24% Similarity=0.418 Sum_probs=161.4
Q ss_pred CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (266)
Q Consensus 54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (266)
.+|+++|++++|++ ++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~-~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWI-M 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCC-C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcc-c
Confidence 37999999999963 46799999999999999999999999999999999999999999999987 58999998642 2
Q ss_pred CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 133 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
..+..+++.... ........+.++.+++.+.. .++++.+|||||||||+|||||+.+|++|||||||
T Consensus 82 --~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 82 --PGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp --SBCHHHHHHTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred --CCCHHHHhhccC-CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 236666654321 12233344455555553211 12346899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 203 NHLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l-~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++||+.++..+++.+ .+. +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 159 s~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ 217 (229)
T ss_dssp TTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999864 333 569999999999986 59999999999996 578877764
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.2e-50 Score=348.91 Aligned_cols=199 Identities=21% Similarity=0.307 Sum_probs=160.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCee------------e
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV------------R 120 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~------------~ 120 (266)
+|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++.. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 699999999995 46799999999999999999999999999999999998 78999999988742 2
Q ss_pred EEEEeccccCCCCCCCcHHHHHHH-----hCCCC----cHHHHHHHHHhcCCCcccccCCCCC-CChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMR-----CFPGV----PEQKLRAHLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGqkqRv~lAral~ 190 (266)
++|++|++... ...+..+++.. ..... ..+++.++++.+++.....++++.+ |||||||||+|||||+
T Consensus 82 i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 82 LFLAFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp BCCCCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred EEEeccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 78899986422 22233333211 11011 1346778999999953456788898 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChh
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 257 (266)
.+|++|||||||++||+.++..+++.|++. +.|||+||||++++..+ ||++++|++|+++ ..|+++
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE-EEESHH
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE-EEeCHH
Confidence 999999999999999999999999888764 46999999999999888 5999999999997 567766
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.3e-49 Score=341.43 Aligned_cols=195 Identities=25% Similarity=0.337 Sum_probs=167.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV 123 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~ 123 (266)
+|+++|++++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.+++.. .++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 6999999986 4899999999999999999999999999999999999999 999998742 4999
Q ss_pred EeccccCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC-------E
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH-------I 195 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~-------l 195 (266)
++|++.. ....++.+++.... .....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+ +
T Consensus 78 v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 78 LSQQQTP--PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp ECSCCCC--CTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ECCCCcc--CCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 9998642 23345666654321 1123667889999999974 5678899999999999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
|||||||+|||+.++..+.+.|++. +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999988887654 579999999999999999999999999996 56777765
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.8e-49 Score=341.57 Aligned_cols=198 Identities=22% Similarity=0.350 Sum_probs=160.6
Q ss_pred cEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 55 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 55 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
+|+++|++++|++ +..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999953 45799999999999999999999999999999999999999999999988 5999999863 2
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
...+..+++.... ....+...++++.+++.+ ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 78 ~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 78 QNDSLRENILFGC-QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp CSEEHHHHHHTTS-CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCHHHHhhCcc-ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 2445666654321 111222333333333311 12357789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHh---h--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 204 HLDLDAVEALIQGLV---L--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 204 ~LD~~~~~~l~~~l~---~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+||+.++..+++.+. + .+.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 216 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELL 216 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHh
Confidence 999999999999883 2 2569999999999986 69999999999996 578887764
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1e-48 Score=341.26 Aligned_cols=201 Identities=25% Similarity=0.356 Sum_probs=166.0
Q ss_pred CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
.+|+++||+++|++. ..+|+|+||+|++|++++|+||||||||||+|+|+|+++| +|+|.+++. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999643 4689999999999999999999999999999999999987 899998874 24
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~ 190 (266)
++|++|++.. + ..+..+++.........+++.++++.+++.+.. .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTIL-F--NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCCC-C--SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcc-c--ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 9999998642 2 236666654322223455677778777764321 23567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.+|+||||||||++||+.++..+++.|.+. +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 241 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLL 241 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEE-EEECHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999998888754 569999999999986 59999999999996 568877764
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-49 Score=336.32 Aligned_cols=190 Identities=23% Similarity=0.350 Sum_probs=158.4
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEec
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ 126 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q 126 (266)
..+|+++|++++|+ + .+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.. .++|++|
T Consensus 8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 45899999999995 4 79999999999999999999999999999999999999999999998853 5999999
Q ss_pred cccCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 127 HHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
++.. ....++.+++.. ... ....+++.++++.+++.. . ++++.+||||||||++|||||+.+|++|||||||
T Consensus 86 ~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EIIV--PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCCC--CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCcC--CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 8642 223345444321 111 223667889999999975 4 7889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 203 NHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 203 ~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
++||+.++..+++.|.+. +.|||+||||++++..+||+++++ .|++
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999888877653 579999999999999999988754 4554
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.9e-47 Score=362.65 Aligned_cols=202 Identities=23% Similarity=0.333 Sum_probs=170.6
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
.+|+++|++|+|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 469999999999643 57999999999999999999999999999999999999999999998874 259
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~ 190 (266)
+|++|++.. + ..+..+++.... +..+++++.++++.+++.+... ..++.+||||||||++|||||+
T Consensus 420 ~~v~Q~~~l-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 420 ALVSQNVHL-F--NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred EEEcCCCcc-c--cccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 999998742 2 235666654322 2445677888888888754322 2345799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
.+|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+. .||++++|++|+++ ..|+++++.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 566 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLL 566 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999998888764 579999999999987 69999999999997 578887764
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-48 Score=352.24 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=170.9
Q ss_pred CCcEEEEeeEEEcC-CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 53 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 53 ~~~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
...|+++||+|+|+ ++..+|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.++++ ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 34699999999995 34579999999999999999999999999999999999998 9999999874 35
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCC-----------CChHHHHHHHHHHHH
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----------LSGGQKSRVAFAKIT 189 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqRv~lAral 189 (266)
++|++|++... ..+..+++.. ......+++.++++.+++.+ ..++++.+ |||||||||+|||||
T Consensus 96 ig~v~Q~~~lf---~~tv~enl~~-~~~~~~~~v~~~l~~~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 96 FGVIPQKVFIF---SGTFRKNLDP-NAAHSDQEIWKVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp EEEESCCCCCC---SEEHHHHHCT-TCCSCHHHHHHHHHHTTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCcccC---ccCHHHHhhh-ccccCHHHHHHHHHHhCCHH-HHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 99999987422 2366666532 22345678889999999974 45677777 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+.+|++|||||||++||+..+..+.+.|++. +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~~ 242 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVR-QYDSILELYH 242 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999998764 469999999998765 69999999999997 5788887643
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.1e-46 Score=362.39 Aligned_cols=203 Identities=24% Similarity=0.335 Sum_probs=172.1
Q ss_pred CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
.+|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999643 67999999999999999999999999999999999999999999999874 259
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~ 190 (266)
+|++|++.. +..+..+++.... +..+++++.++++.+++.+.. ...++.+||||||||++|||||+
T Consensus 420 ~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 420 ALVSQNVHL---FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp EEECSSCCC---CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEccCCcC---CCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 999998742 2346777665432 345677888899988875432 22356899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
.+|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+. .||++++|++|+++ ..|+++++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHHH
Confidence 999999999999999999999998888654 679999999999986 69999999999997 5788887653
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-47 Score=366.27 Aligned_cols=203 Identities=20% Similarity=0.340 Sum_probs=171.3
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
..|+++|++|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 45999999999976667999999999999999999999999999999999999999999999884 2599
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC----------CCCCChHHHHHHHHHHHHccC
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------~~~LSgGqkqRv~lAral~~~ 192 (266)
|++|++.. +..+..+++....+..+++++.++++.+++.+.....| +.+||||||||++|||||+.+
T Consensus 433 ~v~Q~~~l---f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 433 IVLQDTIL---FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EECTTCCC---CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCcc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99998742 23467777654333345566778888777754332222 368999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 578 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV-EMGKHDELIQ 578 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE-ECSCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999998888654 6799999999999875 9999999999997 6899888753
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.2e-47 Score=362.58 Aligned_cols=203 Identities=24% Similarity=0.380 Sum_probs=171.1
Q ss_pred CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..++++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999975 357999999999999999999999999999999999999999999999884 259
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++.. +..+..+++....+...++++.++++..++.+... ..++.+||||||||++|||||+.
T Consensus 418 ~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 418 GLVQQDNIL---FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEECSSCCC---CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcc---CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 999998742 23467777654444455677888888777643322 23346899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 564 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIV-ETGTHRELIA 564 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999998888654 5699999999999874 9999999999997 6799887653
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-46 Score=360.70 Aligned_cols=203 Identities=22% Similarity=0.317 Sum_probs=170.6
Q ss_pred CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529 54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 121 (266)
..|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 46999999999964 457999999999999999999999999999999999999999999999874 359
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHcc
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
+|++|++.. +..+..+++....+....+++.++++..++.+. ...+++.+||||||||++|||||+.
T Consensus 420 ~~v~Q~~~l---f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 420 SAVPQETVL---FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EEECSSCCC---CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCcC---cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 999998742 234666766433333456666666666655321 2345678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
+|++|||||||++||+.+...+.+.+++. +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~-~~g~~~el~~ 566 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVA-GFGTHKELLE 566 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999988764 579999999999986 79999999999997 6799888754
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.9e-46 Score=357.62 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=167.1
Q ss_pred EEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529 56 ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA 122 (266)
Q Consensus 56 l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 122 (266)
|+++|++|+|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999643 46999999999999999999999999999999999999999999999874 2599
Q ss_pred EEeccccCCCCCCCcHHHHHHHhCCC---CcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHH
Q 024529 123 VFSQHHVDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 123 ~~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral 189 (266)
|++|++.. +..+..+++....+. .+++++.++++.+++.+.. ...++.+||||||||++|||||
T Consensus 422 ~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 422 TVSQEPIL---FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EECSSCCC---CSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred EEccCCcc---cCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 99998742 234677776543222 4577888899988875322 1223589999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+.+|++|||||||++||+.+...+.+.+.+. +.|+|+||||++.+. .||++++|++|+++ ..|+++++.
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 569 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKIT-EYGKHEELL 569 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECSCC--
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999998888764 679999999999987 59999999999997 467766653
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.9e-46 Score=330.25 Aligned_cols=195 Identities=26% Similarity=0.433 Sum_probs=148.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
++|+++|+++.+ ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.. +.
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l-~~ 112 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWI-MP 112 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCC-CS
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCcc-Cc
Confidence 469999999864 4689999999999999999999999999999999999999999999987 58999998642 22
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
.+..+++. .. ......+.+.++.+++.+.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 113 --~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 113 --GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp --SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred --ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 36666665 22 22233444555555653221 123457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 204 HLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 204 ~LD~~~~~~l~~~l-~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+||+.++..+++.+ .+. +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 189 ~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 189 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ 246 (290)
T ss_dssp TCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHh
Confidence 99999999999864 332 569999999999986 59999999999996 578887764
No 44
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.8e-44 Score=358.09 Aligned_cols=202 Identities=35% Similarity=0.665 Sum_probs=166.1
Q ss_pred CCCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccC
Q 024529 52 GPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~ 130 (266)
+.++|+++|++++|++. +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++.+..+++|++|+...
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~ 747 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFA 747 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHH
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhh
Confidence 34689999999999642 57899999999999999999999999999999999999999999999887789999986420
Q ss_pred C--CCCCCcHHHHH------------------------------------------------------------------
Q 024529 131 G--LDLSSNPLLYM------------------------------------------------------------------ 142 (266)
Q Consensus 131 ~--~~~~~~~~~~~------------------------------------------------------------------ 142 (266)
. .....++..++
T Consensus 748 ~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi 827 (986)
T 2iw3_A 748 HIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENI 827 (986)
T ss_dssp HGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEST
T ss_pred hhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhh
Confidence 0 00000000000
Q ss_pred ----------------------------------------H-HhCCCCcHHHHHHHHHhcCCCccc-ccCCCCCCChHHH
Q 024529 143 ----------------------------------------M-RCFPGVPEQKLRAHLGSFGVTGNL-ALQPMYTLSGGQK 180 (266)
Q Consensus 143 ----------------------------------------~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqk 180 (266)
. ........+++.++++.+|+.... .++++.+||||||
T Consensus 828 ~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQk 907 (986)
T 2iw3_A 828 GMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQK 907 (986)
T ss_dssp TSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHH
T ss_pred hcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHH
Confidence 0 001122356788899999997543 5678999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCC
Q 024529 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG 254 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g 254 (266)
|||+|||||+.+|+||||||||+|||+.+...+.+.|+++++|||+||||++++..+||++++|++|+++ ..|
T Consensus 908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv-~~G 980 (986)
T 2iw3_A 908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMT-PSG 980 (986)
T ss_dssp HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCC-C--
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeC
Confidence 9999999999999999999999999999999999999998889999999999999999999999999986 344
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.3e-44 Score=369.28 Aligned_cols=203 Identities=25% Similarity=0.385 Sum_probs=173.8
Q ss_pred CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
..|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|. .+
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 359999999999743 36999999999999999999999999999999999999999999999884 36
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhC--CCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHH
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAra 188 (266)
++++||++.. +..+..+++.... +..+++++.++++..++.+.... .....||||||||++||||
T Consensus 1155 i~~V~Qdp~L---F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1155 IAIVSQEPTL---FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp EEEECSSCCC---CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCEe---eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 9999999752 3456777764321 24567889999999888543322 2346799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|+++|+|||||||||+||+++...+.+.|.+. ++|+|+|+|+++.+.. ||+|+||++|+++ ..|+++++.+
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~Iv-E~Gth~eLl~ 1304 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTII-EKGTHTQLMS 1304 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEE-EEECHHHHHH
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999999874 5799999999999874 9999999999997 4799988764
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.4e-43 Score=364.92 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=174.7
Q ss_pred CcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
..|+++||+|+|++ +.++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|. ..
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 35999999999974 357999999999999999999999999999999999999999999999884 36
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~ 190 (266)
++|++|++. -+..+..+++....+..+++++.++++..+++++... .....||||||||++||||++
T Consensus 494 i~~v~Q~~~---Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 494 VAVVSQEPA---LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp EEEECSSCC---CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred ccccCCcce---eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 999999975 2456777777655455678889999998887543322 235689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
++|+|||||||||+||+++...+.+.|.+. ++|+|+|||++..+. .||+|++|++|+++ ..|+++++.
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~iv-e~Gth~eL~ 640 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVV-EVGDHRALM 640 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEE-EEECHHHHH
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeee-ccCCHHHHH
Confidence 999999999999999999988888888764 679999999999987 59999999999997 579988864
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-44 Score=341.69 Aligned_cols=202 Identities=24% Similarity=0.296 Sum_probs=166.6
Q ss_pred CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529 52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
+.++++++|+++.|+ + ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ ...++|++|++...
T Consensus 284 ~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 284 RETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIKAD 359 (538)
T ss_dssp CCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCCCC
T ss_pred CCeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCcCC
Confidence 346899999999994 3 4689999999999999999999999999999999999999999986 34699999986432
Q ss_pred CCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529 132 LDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209 (266)
Q Consensus 132 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~ 209 (266)
...++.+.+... ......+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 360 --~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 360 --YEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp --CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred --CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 233443332211 0001345678899999996 46788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeC--CeEEecCCChhHHHH
Q 024529 210 VEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK 261 (266)
Q Consensus 210 ~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 261 (266)
+..+++.|.+ .+.|||+||||++++..+||++++|++ |++. ..|+++++..
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHHh
Confidence 9998888764 377999999999999999999999986 6664 4677766543
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.5e-44 Score=343.40 Aligned_cols=201 Identities=24% Similarity=0.308 Sum_probs=166.1
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (266)
.++++++|+++.|+ + ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ ...++|++|++...
T Consensus 355 ~~~l~~~~l~~~~~-~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~~~- 429 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG-S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIKAE- 429 (607)
T ss_dssp CEEEEECCEEEECS-S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCCCC-
T ss_pred ceEEEEeceEEEec-c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCccCC-
Confidence 46899999999994 3 4689999999999999999999999999999999999999999976 34699999986432
Q ss_pred CCCCcHHHHHHHh-CCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 024529 133 DLSSNPLLYMMRC-FPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210 (266)
Q Consensus 133 ~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~ 210 (266)
...++.+.+... ... ...+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus 430 -~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~ 507 (607)
T 3bk7_A 430 -YEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 507 (607)
T ss_dssp -CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred -CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHH
Confidence 233443333211 000 1245678899999997 467889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeC--CeEEecCCChhHHHH
Q 024529 211 EALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK 261 (266)
Q Consensus 211 ~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 261 (266)
..+++.|+++ +.|||+||||++++..+||++++|++ |++. ..|+++++..
T Consensus 508 ~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 508 LAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence 9988887653 67999999999999999999999985 6654 4677776654
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.8e-43 Score=360.79 Aligned_cols=203 Identities=23% Similarity=0.318 Sum_probs=170.0
Q ss_pred CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
..|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 459999999999643 46999999999999999999999999999999999999999999999885 25
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHc
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 190 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~ 190 (266)
++|++|++.. +..+..+++.........+++.++++..++.+.. ....+.+||||||||++|||||+
T Consensus 466 i~~v~Q~~~l---~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEPVL---FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSCCC---CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCcc---CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 9999999742 2346777765444445666777777666553211 22456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
.+|+|||||||||+||+.+...+.+.+.. .+.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~-~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIV-EQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCC-CEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999888887764 36799999999999976 9999999999996 6799888754
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-42 Score=330.81 Aligned_cols=188 Identities=17% Similarity=0.232 Sum_probs=158.2
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 132 (266)
.++++++++++.|+ + ..|.++||+|++||++||+||||||||||+|+|+|+++|++|+|...+ ..++|++|.....
T Consensus 267 ~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~~~- 342 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG-D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIFPN- 342 (538)
T ss_dssp CEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCCCC-
T ss_pred cceEEEcceEEEEC-C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhcccc-
Confidence 45799999999995 3 468889999999999999999999999999999999999999998754 4689999986432
Q ss_pred CCCCcHHHHHHHhCC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529 133 DLSSNPLLYMMRCFP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209 (266)
Q Consensus 133 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~ 209 (266)
...++.+++..... ......+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 343 -~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 343 -YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp -CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred -cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 23445444432211 122345778899999974 5778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 210 VEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 210 ~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
+..+++.|++ .+.|||+||||++++..+||||++|++
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9988887764 367999999999999999999999986
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.6e-42 Score=355.36 Aligned_cols=203 Identities=25% Similarity=0.380 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529 54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR 120 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~ 120 (266)
..++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 459999999999643 36899999999999999999999999999999999999999999998874 35
Q ss_pred EEEEeccccCCCCCCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHH
Q 024529 121 IAVFSQHHVDGLDLSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKI 188 (266)
Q Consensus 121 i~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAra 188 (266)
++|++|++.. +..+..+++..... ....+++.+.++..++.+... ...+.+|||||||||+||||
T Consensus 1109 i~~v~Q~~~l---~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPIL---FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCCC---CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCcc---ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 9999999742 34566666643221 245666777777666543221 12356899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
|+.+|+||||||||++||+.+...+.+.+.+. +.|+|+||||++++.. ||+|++|++|+++ ..|+++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVK-EHGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEE-EEECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999888764 5699999999999865 9999999999997 5788888653
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-42 Score=330.77 Aligned_cols=198 Identities=21% Similarity=0.260 Sum_probs=161.7
Q ss_pred EeeEEEcCCCCcceeeceEEEeCC-----cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLD-----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.++++.|++...+++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++|+....
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~-- 425 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAPK-- 425 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCCC--
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEeccccccc--
Confidence 677888965455789999999999 78999999999999999999999999999742 245689999985432
Q ss_pred CCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 024529 134 LSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211 (266)
Q Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~ 211 (266)
+..+....+..... ......+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 426 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 504 (608)
T 3j16_B 426 FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI 504 (608)
T ss_dssp CCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred CCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence 23344444332221 124556778899999974 678899999999999999999999999999999999999999998
Q ss_pred HHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeC--CeEEecCCChhHHHHH
Q 024529 212 ALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKKM 262 (266)
Q Consensus 212 ~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~~ 262 (266)
.+.+.|++ .+.|||+||||++++..+|||+++|++ |++. ..|+++++...
T Consensus 505 ~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 505 ICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhhh
Confidence 88777654 367999999999999999999999986 7775 67887766543
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3e-41 Score=336.32 Aligned_cols=200 Identities=27% Similarity=0.426 Sum_probs=162.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC-CCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.|...|+++.|+ ++.+|+|+||+|++|++++|+||||||||||||+|+| .+ .|. ......+++|++|+.. ...
T Consensus 435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTH 508 (986)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCC
T ss_pred eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccc
Confidence 477779999995 5679999999999999999999999999999999994 22 110 0011234678887642 122
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l 213 (266)
...+..+++....... .+++.++++.+|+.....++++.+||||||||++|||||+.+|+||||||||+|||+.++.++
T Consensus 509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 3345555554211122 677889999999964556789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 214 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 214 ~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
.+.|++.+.|||+||||++++..+||++++|++|+++.+.|+++++.+
T Consensus 588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999988777999999999999999999999999999657899998864
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.2e-42 Score=325.21 Aligned_cols=187 Identities=22% Similarity=0.285 Sum_probs=147.0
Q ss_pred EEE-EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE---------EEcCe-------
Q 024529 56 ISF-SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSAK------- 118 (266)
Q Consensus 56 l~~-~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i---------~~~~~------- 118 (266)
.++ +||+++|++...+++++| +|++||+++|+||||||||||+|+|+|+++|++|++ .+.+.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 699999954334899999 999999999999999999999999999999999985 12221
Q ss_pred ------eeEEEEeccccCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 119 ------VRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 119 ------~~i~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
..+++++|....... ...+....+.... ..+++.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246777775321111 1113333332111 1235778999999974 5678999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEG 247 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G 247 (266)
+|+|||||||||+||+.++.++++.|+++ +.|||+||||++++..+||+|++|++|
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999888877654 779999999999999999999999864
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.2e-41 Score=325.82 Aligned_cols=188 Identities=23% Similarity=0.289 Sum_probs=151.0
Q ss_pred cEEE--------EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE---------EEcC
Q 024529 55 IISF--------SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA 117 (266)
Q Consensus 55 ~l~~--------~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i---------~~~~ 117 (266)
+|++ +|++++|++...+|+++| +|++||+++|+||||||||||||+|+|+++|++|++ .+.+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4888 899999954334899999 999999999999999999999999999999999985 1222
Q ss_pred -------------eeeEEEEeccccCCC-CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529 118 -------------KVRIAVFSQHHVDGL-DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183 (266)
Q Consensus 118 -------------~~~i~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv 183 (266)
...+++++|...... ....+..+.+... ...+++.++++.+|+.+ ..++++.+|||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELEN-VLDRELHQLSGGELQRV 237 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCc-hhCCChhhCCHHHHHHH
Confidence 123667777532111 1112444433221 11245778999999974 56789999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEG 247 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G 247 (266)
+|||||+.+|++|||||||++||+.++..+++.|+++ +.|||+||||++++..+||+|++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999888877654 679999999999999999999999865
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-39 Score=308.42 Aligned_cols=186 Identities=18% Similarity=0.223 Sum_probs=141.1
Q ss_pred eeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE-----------cCee---------
Q 024529 60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR-----------SAKV--------- 119 (266)
Q Consensus 60 ~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~~~~--------- 119 (266)
|++++|++....+++++ ++++||++||+||||||||||||+|+|+++|++|+|.. .+..
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 56888865555677777 68999999999999999999999999999999999831 1110
Q ss_pred ----eEEEEeccccC----CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529 120 ----RIAVFSQHHVD----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191 (266)
Q Consensus 120 ----~i~~~~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~ 191 (266)
...+.+|.... ......+....+... .....+++.++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHHHHHHHHHHHh
Confidence 01111121100 000000111111111 1234577889999999974 5678999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
+|++|||||||++||+.++..+.+.+++. +.|||+||||++++..+||++++|.+|.
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999888887654 5799999999999999999999998765
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.5e-38 Score=305.38 Aligned_cols=190 Identities=19% Similarity=0.205 Sum_probs=129.5
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHH---------------------HHHhCCCCCCceEEE-------EcCe--
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTIL---------------------KLIAGELQPSSGTVF-------RSAK-- 118 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl---------------------~~l~Gl~~p~~G~i~-------~~~~-- 118 (266)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+.|.|. +.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 999999999966553 2221
Q ss_pred -----eeEEEEeccccCC-----------------CCCCCcHHHHHHH--hC--CCC----cH------HHHHHHHHhcC
Q 024529 119 -----VRIAVFSQHHVDG-----------------LDLSSNPLLYMMR--CF--PGV----PE------QKLRAHLGSFG 162 (266)
Q Consensus 119 -----~~i~~~~q~~~~~-----------------~~~~~~~~~~~~~--~~--~~~----~~------~~~~~~l~~~~ 162 (266)
..+++++|..... .....+..+++.. .. ... .. .+...+++.+|
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 1233333321100 0000011111100 00 000 00 01123588899
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhh
Q 024529 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS 237 (266)
Q Consensus 163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~ 237 (266)
+.+...++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++.++++.|++ .+.|||+||||++++. .
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~ 269 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-A 269 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-H
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-h
Confidence 97655678999999999999999999999998 9999999999999999888877754 4679999999999876 5
Q ss_pred cCEEEEE------eCCeEEecCCChhHHH
Q 024529 238 VEELWVV------SEGKATPFHGTFHDYK 260 (266)
Q Consensus 238 ~d~i~~l------~~G~i~~~~g~~~~~~ 260 (266)
||++++| ++|+++ +.|+++++.
T Consensus 270 ~d~ii~l~~g~~~~~G~i~-~~g~~~~~~ 297 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVV-AAGTPEEVM 297 (670)
T ss_dssp CSEEEEECSSSGGGCCSEE-EEECHHHHH
T ss_pred CCEEEEecccccccCCEEE-EecCHHHHh
Confidence 9999999 889986 678888764
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-37 Score=296.65 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=138.1
Q ss_pred eeEEEcCCCCcceeeceEEE-eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE-----------EEcCe---------
Q 024529 60 DASFGYPGGPILFKNLNFGI-DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-----------FRSAK--------- 118 (266)
Q Consensus 60 ~l~~~y~~~~~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-----------~~~~~--------- 118 (266)
+.+.+|+.+ -|+-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .+.+.
T Consensus 4 ~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 567889543 355555655 4999999999999999999999999999999988 22221
Q ss_pred ----eeEEEEeccccCCC-CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529 119 ----VRIAVFSQHHVDGL-DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193 (266)
Q Consensus 119 ----~~i~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p 193 (266)
..+....|...... ....+....+.... ..+++.++++.+++.. ..++++.+|||||||||+|||||+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~Qrv~iA~aL~~~p 157 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKID---ERGKKDEVKELLNMTN-LWNKDANILSGGGLQRLLVAASLLREA 157 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---CSSCHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcch---hHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 12233333211000 01112222222111 1234678899999974 568899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
+|||||||||+||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|.
T Consensus 158 ~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 158 DVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999888887665 6799999999999999999999998653
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.6e-36 Score=292.14 Aligned_cols=107 Identities=24% Similarity=0.342 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 024529 152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL 225 (266)
Q Consensus 152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tii 225 (266)
.+..+.+..+++.....++++.+|||||||||+|||||+.+| +||||||||+|||+.+...+++.+++ .+.|||
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 455677888998655567889999999999999999999887 49999999999999999888877654 367999
Q ss_pred EEecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529 226 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK 260 (266)
Q Consensus 226 ivtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 260 (266)
+||||++++. .||+|++| ++|+++ +.|+++++.
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence 9999999885 69999999 899997 678888764
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.2e-34 Score=283.15 Aligned_cols=107 Identities=23% Similarity=0.296 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 024529 152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL 225 (266)
Q Consensus 152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tii 225 (266)
.++.++++.+++.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.++..+++.|.+ .+.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 35678899999975445788999999999999999999996 799999999999999999888777654 478999
Q ss_pred EEecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529 226 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK 260 (266)
Q Consensus 226 ivtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 260 (266)
+||||++++ .+||+|++| ++|+++ +.|+++++.
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 999999999 689999999 689996 678888764
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-38 Score=294.23 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=151.5
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce-E-EEEcCe--eeEEEEeccc
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-T-VFRSAK--VRIAVFSQHH 128 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~-i~~~~~--~~i~~~~q~~ 128 (266)
.++++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |++++. ..++|++|+.
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 45788888888883 68999999999999999999999999999999999999 8 988763 4578888875
Q ss_pred cC-----CCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH--HccCCCE----E
Q 024529 129 VD-----GLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI--TFKKPHI----I 196 (266)
Q Consensus 129 ~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra--l~~~p~l----l 196 (266)
.. .++...+. +.... ......+++.++++.+|+... .+ +.+|||||||||+|||| |+.+|++ |
T Consensus 189 ~l~~~~~~~tv~eni--~~~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGL 263 (460)
T 2npi_A 189 SATPISDILDAQLPT--WGQSLTSGATLLHNKQPMVKNFGLERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGC 263 (460)
T ss_dssp EEEECCSCCCTTCTT--CSCBCBSSCCSSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred hhcccccccchhhhh--cccccccCcchHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence 21 11111111 10000 001112334567788888653 33 78999999999999999 9999999 9
Q ss_pred EEeC-CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH------HHHhhcCE-----EEEEe-CCeEEecCCChhHHH
Q 024529 197 LLDE-PSNHLDLDAVEALIQGLVLFQGGILMVSHDEH------LISGSVEE-----LWVVS-EGKATPFHGTFHDYK 260 (266)
Q Consensus 197 lLDE-Pt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~~~~~ 260 (266)
|||| ||++||+. ...+.+.+++++.|+|+||||.+ ++..+||+ |++|+ +|+++ .|+.+++.
T Consensus 264 lLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~ 337 (460)
T 2npi_A 264 IVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR 337 (460)
T ss_dssp EEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred EEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence 9999 99999999 77777777788889999999988 78889999 99999 99985 68877663
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.9e-33 Score=275.72 Aligned_cols=107 Identities=23% Similarity=0.328 Sum_probs=93.7
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 024529 152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL 225 (266)
Q Consensus 152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tii 225 (266)
.++.++|+.+|+.....++++.+|||||+|||+|||||+.+| +||||||||+|||+.++..+++.|.+ .+.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 456778999999755567899999999999999999999875 79999999999999999988887764 477999
Q ss_pred EEecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529 226 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK 260 (266)
Q Consensus 226 ivtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 260 (266)
+||||++++.. ||+|++| ++|+++ +.|+++++.
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~ 901 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIA 901 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHH
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHH
Confidence 99999999875 9999999 889997 689988875
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=1.1e-32 Score=254.00 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEE----eC
Q 024529 175 LSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV----SE 246 (266)
Q Consensus 175 LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l----~~ 246 (266)
||||||||++||++|+.+| ++|||||||+|||+.++.++.+.|+++ +.+||+||||++++. +||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 5999999999999999999 999999999999999999999999876 479999999998875 79999999 99
Q ss_pred CeEE
Q 024529 247 GKAT 250 (266)
Q Consensus 247 G~i~ 250 (266)
|+++
T Consensus 375 G~~~ 378 (415)
T 4aby_A 375 GRTV 378 (415)
T ss_dssp TEEE
T ss_pred CceE
Confidence 9875
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=3.9e-33 Score=276.43 Aligned_cols=106 Identities=25% Similarity=0.341 Sum_probs=91.8
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 024529 153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM 226 (266)
Q Consensus 153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiii 226 (266)
+..++++.+++.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..+++.|.+ .+.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999753567899999999999999999999865 99999999999999999988887754 4679999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529 227 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK 260 (266)
Q Consensus 227 vtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 260 (266)
||||++++. .||+|++| ++|+++ +.|+++++.
T Consensus 904 isHdl~~i~-~aDrIivL~p~gG~~~G~Iv-~~g~~~el~ 941 (972)
T 2r6f_A 904 IEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVA 941 (972)
T ss_dssp ECCCHHHHT-TCSEEEEECSSSTTSCCSEE-EEESHHHHH
T ss_pred EcCCHHHHH-hCCEEEEEcCCCCCCCCEEE-EecCHHHHH
Confidence 999999985 79999999 689996 678877764
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.1e-32 Score=274.11 Aligned_cols=107 Identities=24% Similarity=0.331 Sum_probs=92.2
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 024529 153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM 226 (266)
Q Consensus 153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiii 226 (266)
+..++++.+++.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..+++.|.+ .+.|||+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34678899999753567889999999999999999999865 99999999999999999988887754 4779999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHHH
Q 024529 227 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK 261 (266)
Q Consensus 227 vtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 261 (266)
||||++++. .||++++| ++|+++ +.|+++++.+
T Consensus 922 isHdl~~i~-~aDrIivL~p~gg~~~G~Iv-~~G~~~el~~ 960 (993)
T 2ygr_A 922 IEHNLDVIK-TSDWIIDLGPEGGAGGGTVV-AQGTPEDVAA 960 (993)
T ss_dssp ECCCHHHHT-TCSEEEEEESSSTTSCSEEE-EEECHHHHHH
T ss_pred EcCCHHHHH-hCCEEEEECCCcCCCCCEEE-EecCHHHHHh
Confidence 999999985 79999999 689986 6788887753
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.97 E-value=2.8e-30 Score=235.05 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=73.7
Q ss_pred cCCCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcC
Q 024529 169 LQPMYTLSGGQKSRVAFAKITF------KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 169 ~~~~~~LSgGqkqRv~lAral~------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d 239 (266)
++++.+|||||+|||+||+||+ .+|++|||||||++||+.+...+++.|.+. +.|||+||||++++ ..||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence 4678899999999999999999 799999999999999999999998888754 57999999999984 5799
Q ss_pred EEEEEeCCeEE
Q 024529 240 ELWVVSEGKAT 250 (266)
Q Consensus 240 ~i~~l~~G~i~ 250 (266)
++++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999985
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=3e-33 Score=235.87 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=97.0
Q ss_pred CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc--------CeeeEEEEeccccCCC-CCCCcH
Q 024529 68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--------AKVRIAVFSQHHVDGL-DLSSNP 138 (266)
Q Consensus 68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~--------~~~~i~~~~q~~~~~~-~~~~~~ 138 (266)
++.+|+++ ++|++++|+||||||||||+++|+|+ +|++|+|... .+..++|++|++...+ .+....
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~ 86 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPL 86 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHH
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHH
Confidence 45688986 89999999999999999999999999 9999998431 1234778887652222 111000
Q ss_pred HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 024529 139 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 218 (266)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 218 (266)
...+ ........+.++++. ++ |||||++|||||+.+|++|||||||++ ++..+.+.|.
T Consensus 87 ~~~~---~~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~ 144 (208)
T 3b85_A 87 HDAL---RDMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT 144 (208)
T ss_dssp HHHH---TTTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred HHHH---HHhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence 1111 111123345555554 32 999999999999999999999999999 7777777777
Q ss_pred hc--CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 219 LF--QGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 219 ~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
+. +.||| ||||++++.. ...+++|..
T Consensus 145 ~l~~g~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 145 RLGFGSKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp TBCTTCEEE-EEEC----------------CCH
T ss_pred HhcCCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence 65 45888 9999987664 334556643
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.96 E-value=1.3e-30 Score=213.00 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=95.6
Q ss_pred eceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 153 (266)
Q Consensus 74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (266)
|+||++++||+++|+||||||||||++++.+-... .......++++|++... .+........ ...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~-~~~~~~~~~~--------~~~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQ-TVTGAAFDVL--------HYI 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCG-GGHHHHHHHH--------HHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccch-hhHHHHHHHH--------HHH
Confidence 68999999999999999999999999986532211 11111113344432100 0000000000 011
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHH
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD----------------AVEALIQGL 217 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~----------------~~~~l~~~l 217 (266)
.. .....+.... .+ .....|||||||++||||++.+|++|+|||||++||+. ....+.+.+
T Consensus 66 ~~-~~~~~g~~~~-~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 66 VS-KRLQLGKLTV-VD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HH-HHHHTTCCEE-EE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred HH-HHHhCCCeEE-EE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 11 2223454422 22 33567999999999999999999999999999999999 556777664
Q ss_pred h---hcCCEEEEEecCHHHHHh
Q 024529 218 V---LFQGGILMVSHDEHLISG 236 (266)
Q Consensus 218 ~---~~~~tiiivtHd~~~~~~ 236 (266)
+ +.+.|+|+||||++++..
T Consensus 143 ~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 143 KGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp TTHHHHTCSEEEEECSHHHHHH
T ss_pred hhHHhcCCcEEEEeCCHHHhhh
Confidence 3 347799999999999875
No 69
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.95 E-value=1.2e-28 Score=202.81 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=106.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCC-ceEEEE-----cCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFR-----SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 157 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~-----~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
+++|+||||||||||+++|+|++... .|.... .....++|++|+.. ...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~----~~~~~------------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE----GKKKI------------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT----CCEEE-------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc----HHHHH-------------------
Confidence 68999999999999999999997532 232211 11235678877641 11111
Q ss_pred HHhcCCCc-ccccCCCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEe-
Q 024529 158 LGSFGVTG-NLALQPMYTLSGGQKSRVAFAKI-----TFKKPHIILLDE--PSNHLDLDAVEALIQGLVLFQGGILMVS- 228 (266)
Q Consensus 158 l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAra-----l~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~~~~tiiivt- 228 (266)
+..++... ...++++.+||||||||++||+| ++.+|++||||| ||++||+.....+.+.+.+.+.++|++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 00111111 23456788999999999999996 999999999999 9999999999999999988767788888
Q ss_pred --cCHHHHHhhcCEEEEEeCCeEEec-CCChhHHHH
Q 024529 229 --HDEHLISGSVEELWVVSEGKATPF-HGTFHDYKK 261 (266)
Q Consensus 229 --Hd~~~~~~~~d~i~~l~~G~i~~~-~g~~~~~~~ 261 (266)
||.+++..+|++ .+|+++.+ ..+.+++.+
T Consensus 139 ~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 139 IRDVHPLVKEIRRL----PGAVLIELTPENRDVILE 170 (178)
T ss_dssp SSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHH
T ss_pred cCCCchHHHHHHhc----CCcEEEEecCcCHHHHHH
Confidence 599999999997 34555432 244444433
No 70
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=4.2e-28 Score=217.08 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=74.0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEE
Q 024529 168 ALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEEL 241 (266)
Q Consensus 168 ~~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i 241 (266)
.+.++..||||||||++||++|+ .+|++|||||||++||+.....+.+.+.+. +.+||+|||+.+. ..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-MEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-GGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HhhCceE
Confidence 34567899999999999999997 689999999999999999999999888765 5689999999764 5589987
Q ss_pred --EEEeCCeEEecCCChhH
Q 024529 242 --WVVSEGKATPFHGTFHD 258 (266)
Q Consensus 242 --~~l~~G~i~~~~g~~~~ 258 (266)
++|.+|.......+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888876544444444
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=7.7e-30 Score=234.78 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=127.1
Q ss_pred CcceeeceEEEeCCc--------------------EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--eEEEEec
Q 024529 69 PILFKNLNFGIDLDS--------------------RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--RIAVFSQ 126 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge--------------------~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--~i~~~~q 126 (266)
+.+++++||+|++|+ +++|+||||||||||+|+|+|+++|++|+|..++.. +.++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 999999999999999999999999999999876532 2267777
Q ss_pred cccC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChH--HHHHHHHHHHHcc----------CC
Q 024529 127 HHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGG--QKSRVAFAKITFK----------KP 193 (266)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkqRv~lAral~~----------~p 193 (266)
.+.. .+.+..++ .... ....+.++++.+++.+. . ..+. ||+| |+||++||++|+. +|
T Consensus 116 ~~~~~~ltv~D~~----g~~~---~~~~~~~~L~~~~L~~~-~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 116 HPNIPNVVFWDLP----GIGS---TNFPPDTYLEKMKFYEY-D-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp CSSCTTEEEEECC----CGGG---SSCCHHHHHHHTTGGGC-S-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ccccCCeeehHhh----cccc---hHHHHHHHHHHcCCCcc-C-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 6421 11111111 0001 12346788888988643 2 2333 9999 9999999999999 99
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhc------------CCEEEEEecCHHH--HHhhcCEEE-EEeCCe
Q 024529 194 HIILLDEPSNHLDLDAVEALIQGLVLF------------QGGILMVSHDEHL--ISGSVEELW-VVSEGK 248 (266)
Q Consensus 194 ~lllLDEPt~~LD~~~~~~l~~~l~~~------------~~tiiivtHd~~~--~~~~~d~i~-~l~~G~ 248 (266)
++++|||||++||+.++..+++.+++. ..+|+++||+++. ++.+||++. .|..|.
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 999999999999998877776655432 1358899999887 888898875 455554
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.93 E-value=4.6e-31 Score=233.95 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=120.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 134 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 134 (266)
+|+++||+|.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|.+...
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~~lf--- 165 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKSHFW--- 165 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTSGGG---
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCccccc---
Confidence 588999999995 56899999999999999999999999999999999998 89884 4556654211
Q ss_pred CCcHHH-HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529 135 SSNPLL-YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213 (266)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l 213 (266)
..+... ++.. ..... ..+.+.++.+ +... .+ +..|||||||| ||||+.+|+||| |++||+.+...+
T Consensus 166 ~~ti~~~ni~~-~~~~~-~~~~~~i~~~-L~~g-ld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 166 LASLADTRAAL-VDDAT-HACWRYFDTY-LRNA-LD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp GGGGTTCSCEE-EEEEC-HHHHHHHHHT-TTGG-GG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred cccHHHHhhcc-Ccccc-HHHHHHHHHH-hHcc-CC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 011110 0000 00111 2455666654 4332 22 67999999999 999999999999 999999887776
Q ss_pred HHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529 214 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 214 ~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 259 (266)
.. +||++..+. .||+| +|++|+++ ..|+.+++
T Consensus 233 ~~-----------ltH~~~~~~-~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 233 LY-----------LHSRVQTFR-FEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp GG-----------GTTTEEEEE-CCCCC-CCC---CC-CCCCHHHH
T ss_pred HH-----------HhCCHHHHH-hCCEE-EEeCCEEE-EeCCHHHH
Confidence 52 299988764 79999 99999996 78998876
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=2.5e-27 Score=212.83 Aligned_cols=145 Identities=16% Similarity=0.159 Sum_probs=105.2
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
+++++||.+++|++++|+||||||||||+++|+|+++|++|.|.+++... +.... ...
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e-----------~~~~~---------~~~-- 217 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE-----------IVFKH---------HKN-- 217 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC-----------CCCSS---------CSS--
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec-----------ccccc---------chh--
Confidence 78999999999999999999999999999999999999999998765310 00000 000
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC
Q 024529 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 230 (266)
Q Consensus 151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd 230 (266)
.+++ .. . |||+||++||+||..+|++|||||||+. +. ..+++.+..-+.|+|++||+
T Consensus 218 ---------~i~~---~~-----g--gg~~~r~~la~aL~~~p~ilildE~~~~---e~-~~~l~~~~~g~~tvi~t~H~ 274 (330)
T 2pt7_A 218 ---------YTQL---FF-----G--GNITSADCLKSCLRMRPDRIILGELRSS---EA-YDFYNVLCSGHKGTLTTLHA 274 (330)
T ss_dssp ---------EEEE---EC-----B--TTBCHHHHHHHHTTSCCSEEEECCCCST---HH-HHHHHHHHTTCCCEEEEEEC
T ss_pred ---------EEEE---Ee-----C--CChhHHHHHHHHhhhCCCEEEEcCCChH---HH-HHHHHHHhcCCCEEEEEEcc
Confidence 0000 00 0 8999999999999999999999999982 22 23444444323479999999
Q ss_pred HHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529 231 EHLISGSVEELWVVSEGKATPFHGTFHDYKK 261 (266)
Q Consensus 231 ~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 261 (266)
.+ +...|||+++|.+|......-+.+...+
T Consensus 275 ~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~ 304 (330)
T 2pt7_A 275 GS-SEEAFIRLANMSSSNSAARNIKFESLIE 304 (330)
T ss_dssp SS-HHHHHHHHHHHHHTSGGGTTSCHHHHHH
T ss_pred cH-HHHHhhhheehhcCCcccCCCCHHHHHH
Confidence 99 5668999999988864212234444433
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.91 E-value=7.8e-24 Score=190.64 Aligned_cols=80 Identities=29% Similarity=0.478 Sum_probs=68.4
Q ss_pred cCCCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcC
Q 024529 169 LQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 169 ~~~~~~LSgGqkq------Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d 239 (266)
++++..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|.++ +.+||+||||.++ ..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCC
Confidence 4678899999999 678888899999999999999999999999998888653 4589999999765 56899
Q ss_pred EEEEEe--CCeE
Q 024529 240 ELWVVS--EGKA 249 (266)
Q Consensus 240 ~i~~l~--~G~i 249 (266)
++++|+ +|..
T Consensus 322 ~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 HVIRISLENGSS 333 (339)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCcc
Confidence 999885 4543
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.91 E-value=2.3e-26 Score=204.08 Aligned_cols=178 Identities=17% Similarity=0.124 Sum_probs=126.3
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------eeEEEEeccccCCCCC
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL 134 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~ 134 (266)
+.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++. ....
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCH
Confidence 46789999999999999999999999999999999999999987542 13788887642 0111
Q ss_pred CCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHH
Q 024529 135 SSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVE 211 (266)
Q Consensus 135 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~ 211 (266)
..+..+.+... ....+ ..+++.+|+.+ ..++++.+|| +||++|||||+.+|+ +|+|| ||+|||+....
T Consensus 169 ~~~v~e~l~~~~~~~~d----~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~ 239 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 239 (302)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHcCCc----chHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence 11222222110 00111 12455667753 3456678899 999999999999999 99999 99999998643
Q ss_pred HHHHHHh-hcCCEEEEEec---------CHHHHHhhcCEEEEEeCCeEEe--cCCChhHHHHH
Q 024529 212 ALIQGLV-LFQGGILMVSH---------DEHLISGSVEELWVVSEGKATP--FHGTFHDYKKM 262 (266)
Q Consensus 212 ~l~~~l~-~~~~tiiivtH---------d~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~ 262 (266)
..+. ..+.|+|++|| .++.+...+..|.++..|+... ..-+++.+.+.
T Consensus 240 ---~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~ 299 (302)
T 3b9q_A 240 ---REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNA 299 (302)
T ss_dssp ---HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHH
T ss_pred ---HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHH
Confidence 3343 45789999999 5667777888999999997521 12355555443
No 76
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.91 E-value=6.7e-24 Score=192.19 Aligned_cols=85 Identities=18% Similarity=0.072 Sum_probs=75.6
Q ss_pred CCCC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcC
Q 024529 170 QPMY-TLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 170 ~~~~-~LSgGqkqRv~lAral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d 239 (266)
+++. .|||||+||++||++|+ .+|+||||||||++||+..+..+++.+.+...|+|++||. +. .||
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA 335 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence 3456 79999999999999999 8999999999999999999999999998877789999995 43 799
Q ss_pred EEEEEeCCeEEecCCChhHH
Q 024529 240 ELWVVSEGKATPFHGTFHDY 259 (266)
Q Consensus 240 ~i~~l~~G~i~~~~g~~~~~ 259 (266)
++++|++|++. ..|+++++
T Consensus 336 ~i~~l~~G~i~-~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFT-PVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEE-ECCCTTTS
T ss_pred EEEEEECCEEE-ecCCHHHH
Confidence 99999999996 56877654
No 77
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.90 E-value=6.1e-25 Score=221.69 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=116.1
Q ss_pred CCcEEEEe-----eEEEcCCCCcceeeceEEEeC-------CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeee
Q 024529 53 PPIISFSD-----ASFGYPGGPILFKNLNFGIDL-------DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120 (266)
Q Consensus 53 ~~~l~~~~-----l~~~y~~~~~~l~~vsl~i~~-------Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~ 120 (266)
.++|++++ |++.|+++..+++|++|++++ |++++|+||||||||||||+| |++.+- ..
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aq 817 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQ 817 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------HT
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------hh
Confidence 45799999 999995456799999999987 999999999999999999999 987642 12
Q ss_pred EE-EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529 121 IA-VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199 (266)
Q Consensus 121 i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 199 (266)
+| |+||+.. .+.+.... +..+|+.+.. ....+++|+++++ +++|++++.+|+++|||
T Consensus 818 iG~~Vpq~~~-~l~v~d~I-------------------~~rig~~d~~-~~~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 818 MGCYVPAEVC-RLTPIDRV-------------------FTRLGASDRI-MSGESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp TTCCEESSEE-EECCCSBE-------------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred eeEEeccCcC-CCCHHHHH-------------------HHHcCCHHHH-hhchhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 44 7777642 11221111 1234443322 2345678887775 99999999999999999
Q ss_pred CCCCCCCHHHH----HHHHHHHhhc-CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 200 EPSNHLDLDAV----EALIQGLVLF-QGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 200 EPt~~LD~~~~----~~l~~~l~~~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|||+|+|+... ..+++.+.+. +.++|++||+.+++..+||++.++ +|++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999998763 2445556554 779999999999999999998876 47764
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=2.5e-27 Score=200.79 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=103.9
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEEEeccccCCCCCCCc
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAVFSQHHVDGLDLSSN 137 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~~~q~~~~~~~~~~~ 137 (266)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ +. ..++|++|++..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~------- 79 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTI------- 79 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHH-------
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHH-------
Confidence 3589999999999999999999999999999999998 6 88876 31 134555554310
Q ss_pred HHHHHH------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH-----HHHHccCCCEEEEeC
Q 024529 138 PLLYMM------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF-----AKITFKKPHIILLDE 200 (266)
Q Consensus 138 ~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l-----Aral~~~p~lllLDE 200 (266)
+..+. ....+.....+.++++...+. ..+ .+|||||+||++| |++|+.+|++++|||
T Consensus 80 -~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 80 -FEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp -HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred -HHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 00000 000112345567777764432 222 5799999999999 899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhh----------cCCEEEEEecCHHHHHhhcCEEEE
Q 024529 201 PSNHLDLDAVEALIQGLVL----------FQGGILMVSHDEHLISGSVEELWV 243 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~----------~~~tiiivtHd~~~~~~~~d~i~~ 243 (266)
||+++|..+...+.+.+.. ...+.|+++||.+.+...+++++.
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 9999998776666665542 234678899999888777766553
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=7.3e-26 Score=210.23 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=130.9
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------- 118 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------- 118 (266)
+++++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|...|.
T Consensus 129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 35789999999996356799999 999999999999999999999999999999999999987664
Q ss_pred -----eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCC-cccccCCCCCCChHHHHHHHHHHHHccC
Q 024529 119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT-GNLALQPMYTLSGGQKSRVAFAKITFKK 192 (266)
Q Consensus 119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqRv~lAral~~~ 192 (266)
..++|++|.... .....+...+... ..+.....+-. ..+.+ .+..||+|| ||++|| +.+
T Consensus 208 ~~~l~r~i~~v~q~~~~-~~~~~~v~~~~~~---------~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA---l~~ 272 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVS-PLLRMQGAAYATR---------IAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA---IGE 272 (438)
T ss_dssp HHHHHTEEEEEECTTSC-HHHHHHHHHHHHH---------HHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH---TTC
T ss_pred ccccCceEEEEECCCCC-HHHHHHHHHHHHH---------HHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH---hCC
Confidence 147888885211 0000011111100 01111111100 01111 357899999 999999 888
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcC------C------EEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 193 PHIILLDEPSNHLDLDAVEALIQGLVLFQ------G------GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 193 p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~------tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
|++ |+|||+.....+.+.+.+.. + ||+++|||++ ..+||++++|.+|+++ ..++..
T Consensus 273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv-l~~~~~ 340 (438)
T 2dpy_A 273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV-LSRRLA 340 (438)
T ss_dssp CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE-ECHHHH
T ss_pred Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE-EeCCHH
Confidence 888 99999999999998886541 3 7999999998 5689999999999986 455443
No 80
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.90 E-value=3.6e-26 Score=206.38 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=125.6
Q ss_pred CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-------------
Q 024529 53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------- 119 (266)
Q Consensus 53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------- 119 (266)
+++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|...+..
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 35789999999996456789999 9999999999999999999999999999999999988765421
Q ss_pred -----eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529 120 -----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194 (266)
Q Consensus 120 -----~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 194 (266)
.+.+++|... .....+.... ....+.+.+...+-.-...-..+..||+|| ||+++| +.+|+
T Consensus 122 ~~~~~~v~~~~~~~~-------~~~~r~~~~~---~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~ 187 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-------PALERMKAAF---TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPD 187 (347)
T ss_dssp HHHTTEEEEEECTTS-------CHHHHHHHHH---HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCC
T ss_pred hhhhceEEEEECCCC-------CHHHHHHHHH---HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCC
Confidence 1222222110 0110000000 000011111111110000013567899999 899999 57887
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc-----CC-----EEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529 195 IILLDEPSNHLDLDAVEALIQGLVLF-----QG-----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257 (266)
Q Consensus 195 lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-----tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 257 (266)
+ |+|||+.....+.+.+.+. +. ||+++|||++ ..+||++++|.+|+++ ..++..
T Consensus 188 ~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv-l~~~l~ 251 (347)
T 2obl_A 188 V------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV-LTRELA 251 (347)
T ss_dssp C------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE-BCHHHH
T ss_pred c------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE-EeCCHH
Confidence 7 9999999999999888754 23 7899999998 6789999999999996 555443
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=2.1e-27 Score=211.66 Aligned_cols=175 Identities=14% Similarity=0.056 Sum_probs=126.6
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEE-----------------------EeCCcEEEEECCCCchHHHHHHHHhCCCCCCc
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFG-----------------------IDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~-----------------------i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 110 (266)
..|++++|++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+.
T Consensus 42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 3589999999993 466777764 89999999999999999999999999999986
Q ss_pred eEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHh--C--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529 111 GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC--F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 185 (266)
Q Consensus 111 G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l 185 (266)
|. ..+++++|+.... ..+...+.... . + ..+.+.+.+.++.++ .+ ..+.++..|||||+||+++
T Consensus 119 G~------~~v~~v~qd~~~~---~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 119 HH------PRVDLVTTDGFLY---PNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TC------CCEEEEEGGGGBC---CHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETTTTEEEEE
T ss_pred CC------CeEEEEecCccCC---cccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChhhhhhhhh
Confidence 64 4589999986421 11333332111 0 1 123456778888887 33 2345677999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH-HhhcCEEEEEeCC
Q 024529 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI-SGSVEELWVVSEG 247 (266)
Q Consensus 186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~-~~~~d~i~~l~~G 247 (266)
|++++.+|+|||||||+..+|+.. ..+.+.-..+|+|+|+.+.. ...++|.+.+.++
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998521 12333334678888988764 3345555545444
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=1.3e-24 Score=206.40 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=121.1
Q ss_pred cEEEEeeEEEcCCCCcceeec-eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529 55 IISFSDASFGYPGGPILFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
.++++++++.|++ |+.+ +..|.+|++++|+||||||||||+++++|+..|. |+ ..+.+.+|+...
T Consensus 257 ~~~~~~l~~g~~~----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~~--- 322 (525)
T 1tf7_A 257 RSSNVRVSSGVVR----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEESRA--- 322 (525)
T ss_dssp CCCCCEECCSCHH----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCHH---
T ss_pred ccccceeecChHH----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCHH---
Confidence 3556666655521 2322 5589999999999999999999999999998875 43 113445554310
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----
Q 024529 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD----- 208 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~----- 208 (266)
...... ..+ +.+.+ + +...|+. ...+.++.+|||||+||+++|+++..+|++||+| ||++||..
T Consensus 323 ---~l~~~~-~~~-g~~~~---~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~ 391 (525)
T 1tf7_A 323 ---QLLRNA-YSW-GMDFE---E-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNA 391 (525)
T ss_dssp ---HHHHHH-HTT-SCCHH---H-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHH
T ss_pred ---HHHHHH-HHc-CCCHH---H-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHH
Confidence 111111 111 22222 2 2234554 3445677899999999999999999999999999 99999998
Q ss_pred HHHHHHH---HHhhcCCEEEEEecCH----------HHHHhhcCEEEEEeCCe
Q 024529 209 AVEALIQ---GLVLFQGGILMVSHDE----------HLISGSVEELWVVSEGK 248 (266)
Q Consensus 209 ~~~~l~~---~l~~~~~tiiivtHd~----------~~~~~~~d~i~~l~~G~ 248 (266)
.+..+.+ .+++.+.|||+|||+. ..+..+||+|++|++|+
T Consensus 392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 7666544 4455678999999999 77888999999998876
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.89 E-value=4.9e-25 Score=199.49 Aligned_cols=177 Identities=17% Similarity=0.134 Sum_probs=125.5
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------eeEEEEeccccCCCCCC
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~~ 135 (266)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++.. ....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-CCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-cChh
Confidence 4689999999999999999999999999999999999999987542 137888876420 1111
Q ss_pred CcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHH
Q 024529 136 SNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEA 212 (266)
Q Consensus 136 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~~ 212 (266)
.+....+... ....+ ..+++.+|+.. ..++.+.+|| +||++|||+|+.+|+ +|+|| ||+|||+....
T Consensus 227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~- 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 296 (359)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred hhHHHHHHHHHhCCCH----HHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-
Confidence 1222222110 00111 12455667753 3455678899 999999999999999 99999 99999998653
Q ss_pred HHHHHh-hcCCEEEEEec---------CHHHHHhhcCEEEEEeCCeEEe--cCCChhHHHHH
Q 024529 213 LIQGLV-LFQGGILMVSH---------DEHLISGSVEELWVVSEGKATP--FHGTFHDYKKM 262 (266)
Q Consensus 213 l~~~l~-~~~~tiiivtH---------d~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~ 262 (266)
..+. ..+.|+|++|| .+..+...+..|.++..|+... ..-+++.|...
T Consensus 297 --~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ 356 (359)
T 2og2_A 297 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNA 356 (359)
T ss_dssp --HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHH
T ss_pred --HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHH
Confidence 2343 45789999999 4667777788999999997421 12355555443
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=2.7e-27 Score=198.68 Aligned_cols=163 Identities=12% Similarity=0.021 Sum_probs=95.0
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC-------eeeEEEEeccccCCC--CCCCcHH
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA-------KVRIAVFSQHHVDGL--DLSSNPL 139 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-------~~~i~~~~q~~~~~~--~~~~~~~ 139 (266)
..+++| .+|++|++++|+||||||||||+|+|+|+++...+.+.... ...++|++|++.... ....+..
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 346777 79999999999999999999999999999863322211110 123667776532100 0000000
Q ss_pred HH--HHH--hCCCCcHHHHHHH----------HHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529 140 LY--MMR--CFPGVPEQKLRAH----------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205 (266)
Q Consensus 140 ~~--~~~--~~~~~~~~~~~~~----------l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L 205 (266)
.. ... ...+.....+.+. ++.+++. ...++++..|| +|+.+|++++|||||+++
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l 154 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQARLIGR 154 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence 00 000 0001122222222 3333442 23345566677 899999999999999998
Q ss_pred ----CHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529 206 ----DLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVS 245 (266)
Q Consensus 206 ----D~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~ 245 (266)
|+..+..+.+.+.+ .+.|+|+||||++++..+||++++|.
T Consensus 155 ~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 155 GTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 67777777666543 35699999999999999999999884
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.88 E-value=7.8e-23 Score=204.35 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=109.6
Q ss_pred CcEEEEeeEEEcC----CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHH--------hCCCCCCceEEEEcCeeeE
Q 024529 54 PIISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--------AGELQPSSGTVFRSAKVRI 121 (266)
Q Consensus 54 ~~l~~~~l~~~y~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~~~~~i 121 (266)
..+.+++...-+- +...+++|++|++++|++++|+||||||||||||++ .|.+.|.++...
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~------- 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV------- 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE-------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc-------
Confidence 3577777654431 234688999999999999999999999999999999 666555443211
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEe
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLD 199 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLD 199 (266)
+.+. .++..+|+.+ .....+|+|+.++..+|+++ +.+|+++|||
T Consensus 703 ~~~d------------------------------~i~~~ig~~d----~l~~~lStf~~e~~~~a~il~~a~~~sLlLLD 748 (934)
T 3thx_A 703 SIVD------------------------------CILARVGAGD----SQLKGVSTFMAEMLETASILRSATKDSLIIID 748 (934)
T ss_dssp ECCS------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred hHHH------------------------------HHHHhcCchh----hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEe
Confidence 1000 1122334332 12356888888888888888 9999999999
Q ss_pred CCCCCCCHHHHHHH----HHHHhh-cCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529 200 EPSNHLDLDAVEAL----IQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 200 EPt~~LD~~~~~~l----~~~l~~-~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 250 (266)
|||+|+|+.....+ ++.+.+ .+.++|++||+.++. .+||++..+.+|++.
T Consensus 749 Ep~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 749 ELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp SCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 99999999865544 455554 478999999998766 589998888888874
No 86
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.88 E-value=7.3e-23 Score=180.47 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=105.9
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce-EEEE-cCee-------eEEEEeccccCCCCCCCcHHH
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFR-SAKV-------RIAVFSQHHVDGLDLSSNPLL 140 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~-~~~~-------~i~~~~q~~~~~~~~~~~~~~ 140 (266)
.+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+ .... ++..+.+. .........
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~----~~~~~~~~l 98 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR----VRLRQSDSL 98 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTT----CCGGGCHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcC----CChhhcccc
Confidence 478999999999999999999999999999999999998877 5532 2110 00000000 000000000
Q ss_pred HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHH
Q 024529 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ-KSRVAFAKITFKKPHIILLDEPSN---H---LDL-DAVEA 212 (266)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kqRv~lAral~~~p~lllLDEPt~---~---LD~-~~~~~ 212 (266)
...........+.+.++++...+. +. ..+..+|.+| +||+. |+++..+|++||+||||+ + +|. .....
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~--i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~ 174 (296)
T 1cr0_A 99 KREIIENGKFDQWFDELFGNDTFH--LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDN 174 (296)
T ss_dssp HHHHHHHTHHHHHHHHHHSSSCEE--EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhccCCEE--EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHH
Confidence 000000000011223333333331 22 2336789999 56666 999999999999999999 5 454 55556
Q ss_pred HHHHHh----hcCCEEEEEecCH--H--------------------HHHhhcCEEEEEeCCeE
Q 024529 213 LIQGLV----LFQGGILMVSHDE--H--------------------LISGSVEELWVVSEGKA 249 (266)
Q Consensus 213 l~~~l~----~~~~tiiivtHd~--~--------------------~~~~~~d~i~~l~~G~i 249 (266)
+.+.|+ +.+.+||++||+. + .+..+||+|++|++|+.
T Consensus 175 i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 175 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 666553 3478999999995 4 77889999999988764
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.87 E-value=9.8e-25 Score=189.84 Aligned_cols=140 Identities=18% Similarity=0.206 Sum_probs=100.7
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-ceEEEEcCeeeEEEEeccccCCCC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLD 133 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~ 133 (266)
+++++++++. .+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|...+.. +.|++|....
T Consensus 5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~--- 73 (261)
T 2eyu_A 5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS--- 73 (261)
T ss_dssp -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS---
T ss_pred CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce---
Confidence 3556777642 4889999 8999999999999999999999999999998 9999765431 2222221100
Q ss_pred CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529 134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213 (266)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l 213 (266)
. ..+ ..+++.. ..| |++||++|..+|++|++|||| |+.+...+
T Consensus 74 -----------~---v~q-------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 74 -----------I---VNQ-------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp -----------E---EEE-------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred -----------e---eeH-------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 0 000 1233321 122 899999999999999999999 99988776
Q ss_pred HHHHhhcCCEEEEEecCHHHHHhhcCEEEEE
Q 024529 214 IQGLVLFQGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 214 ~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
++.. ..+.+|+++||+.+ +...||+++.|
T Consensus 117 l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 117 LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HHHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 6654 44779999999987 44567776544
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.87 E-value=1.2e-25 Score=213.46 Aligned_cols=166 Identities=9% Similarity=-0.002 Sum_probs=108.7
Q ss_pred cEEEEeeEEEcCCCCcceeeceE-EEeCCcEEEEECCCCchHHHHHHH--HhCCCCCCceEEEEcCee----------eE
Q 024529 55 IISFSDASFGYPGGPILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKL--IAGELQPSSGTVFRSAKV----------RI 121 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~--l~Gl~~p~~G~i~~~~~~----------~i 121 (266)
+++.+++.+.+ ++..+|++++| .|++|++++|+||||||||||+++ ++|+++|++|.|++.+.. .+
T Consensus 12 ~~~~~~~~~~~-~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~ 90 (525)
T 1tf7_A 12 NSEHQAIAKMR-TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSF 90 (525)
T ss_dssp --CCSSCCEEC-CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGG
T ss_pred Ccccccccccc-CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHc
Confidence 35555665544 56679999999 999999999999999999999999 789999999999876531 23
Q ss_pred EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHc-cCCCEEEEe
Q 024529 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITF-KKPHIILLD 199 (266)
Q Consensus 122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~-~~p~lllLD 199 (266)
||++|++..... +..+.... .....-...+.-++ +.-.++.+|. .+|++++||
T Consensus 91 g~~~q~~~~~~~------------------------l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilD 145 (525)
T 1tf7_A 91 GWDLAKLVDEGK------------------------LFILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSID 145 (525)
T ss_dssp TCCHHHHHHTTS------------------------EEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEE
T ss_pred CCChHHhhccCc------------------------EEEEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEEC
Confidence 333333210000 00000000 00000111222222 2333444442 578999999
Q ss_pred CCCCC-----CCHHHHHHHHHHHh---hcCCEEEEEecCHHHH---------HhhcCEEEEEeC
Q 024529 200 EPSNH-----LDLDAVEALIQGLV---LFQGGILMVSHDEHLI---------SGSVEELWVVSE 246 (266)
Q Consensus 200 EPt~~-----LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~---------~~~~d~i~~l~~ 246 (266)
|||+. ||+..+..+.+.++ +.+.|||++||+++++ ..+||+|++|++
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 99984 68888777766554 4578999999999884 556999999988
No 89
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.87 E-value=1.9e-24 Score=188.88 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=86.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------eeEEEEeccccCCC--CCCCcHHHHHHHhCCCCcHHH
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQHHVDGL--DLSSNPLLYMMRCFPGVPEQK 153 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 153 (266)
.++|+||||||||||+|+|+|+..|++|+|.+.+. ..+++++|+..... ++..++... .........+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g-~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG-DQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh-hhcccHHHHHH
Confidence 48999999999999999999999999999987653 36899998753211 111121110 00001111233
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL 233 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~ 233 (266)
+.+++. ....+..+.+|||||+||+++|||++. +++||||+++||+.. ..+++.+.+. .+||+|.|..+.
T Consensus 83 i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 83 IEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHTT-SEEEEEETTGGG
T ss_pred HHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHhc-CcEEEEEecccc
Confidence 444433 123345667999999999999999886 999999999999987 4556666665 788888887653
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=1e-21 Score=195.62 Aligned_cols=106 Identities=27% Similarity=0.379 Sum_probs=93.0
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEe
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVS 228 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivt 228 (266)
..+.|..+|+.....++++.+|||||+|||+|||||+++|+ +|||||||+|||+....++++.|++. +.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678889997544678999999999999999999999887 99999999999999999988888754 56999999
Q ss_pred cCHHHHHhhcCEEEEE------eCCeEEecCCChhHHHH
Q 024529 229 HDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK 261 (266)
Q Consensus 229 Hd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 261 (266)
||++++.. ||+|++| ++|+++ +.|+++++.+
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLK 560 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHH
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEEE-Eeechhhhhc
Confidence 99999875 9999999 889986 7899998754
No 91
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.86 E-value=1.8e-22 Score=198.32 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=107.6
Q ss_pred CcEEEEeeEEEcC--CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEeccccC
Q 024529 54 PIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVD 130 (266)
Q Consensus 54 ~~l~~~~l~~~y~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~ 130 (266)
..|.+++...-.- ++..+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+.......+++++|-.
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~-- 623 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY-- 623 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE--
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh--
Confidence 3577887743220 235689999999 99999999999999999999999864 677865433333444444311
Q ss_pred CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCC
Q 024529 131 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHL 205 (266)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLDEP---t~~L 205 (266)
..++..+.+ ...+|+|+++++.+|+++ +.+|+++||||| |++|
T Consensus 624 ----------------------------~~~~~~d~l----~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l 671 (765)
T 1ewq_A 624 ----------------------------TRIGASDDL----AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671 (765)
T ss_dssp ----------------------------EECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred ----------------------------ccCCHHHHH----HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence 111111111 124799999999999999 999999999999 9999
Q ss_pred CHHHH-HHHHHHHhhcCCEEEEEecCHHHHH
Q 024529 206 DLDAV-EALIQGLVLFQGGILMVSHDEHLIS 235 (266)
Q Consensus 206 D~~~~-~~l~~~l~~~~~tiiivtHd~~~~~ 235 (266)
|+.+. ..+++.+.+.+.++|++||+.++..
T Consensus 672 D~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 672 DGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 99876 5788888877789999999998865
No 92
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.86 E-value=1.2e-21 Score=156.24 Aligned_cols=80 Identities=25% Similarity=0.442 Sum_probs=70.3
Q ss_pred cCCCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcC
Q 024529 169 LQPMYTLSGGQKSRVAFA------KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 169 ~~~~~~LSgGqkqRv~lA------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d 239 (266)
++++.+||||||||++|| |||+.+|++|||||||+|||+.++..+.+.+.+. +.|||+||||.+ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 567899999999999876 8999999999999999999999999998888764 469999999995 567999
Q ss_pred EEEEE--eCCeE
Q 024529 240 ELWVV--SEGKA 249 (266)
Q Consensus 240 ~i~~l--~~G~i 249 (266)
++++| .+|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 45654
No 93
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.86 E-value=8.1e-23 Score=203.74 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=99.5
Q ss_pred cEEEEeeEEEc-----C-CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCeeeEEEEecc
Q 024529 55 IISFSDASFGY-----P-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQH 127 (266)
Q Consensus 55 ~l~~~~l~~~y-----~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~i~~~~q~ 127 (266)
.|.+++...-. + ++..+++|+||++++|++++|+||||||||||||+++++.-. ..|.........++++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~--- 716 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV--- 716 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC---
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH---
Confidence 57777654322 1 245789999999999999999999999999999999764211 1110000000001100
Q ss_pred ccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529 128 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207 (266)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~ 207 (266)
..++..+++.+. ..+..+++|+||+|++.++++ +.+|+++||||||+|||+
T Consensus 717 ---------------------------d~i~~~ig~~d~-l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 717 ---------------------------DGIFTRMGAADN-IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------SEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred ---------------------------HHHHHhCChHHH-HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 012233444332 235568899999999999999 899999999999999999
Q ss_pred HHHHHHH----HHHhh-cCCEEEEEecCHHHHHhhcC
Q 024529 208 DAVEALI----QGLVL-FQGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 208 ~~~~~l~----~~l~~-~~~tiiivtHd~~~~~~~~d 239 (266)
.....+. +.+.+ .+.++|++||+.+++. +||
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~ 803 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEK 803 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHh
Confidence 8766554 44433 4779999999988764 454
No 94
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.85 E-value=3.9e-23 Score=177.73 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=95.4
Q ss_pred CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc-CeeeEEEEeccccCCCCCCCcHHHHHHH-
Q 024529 67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AKVRIAVFSQHHVDGLDLSSNPLLYMMR- 144 (266)
Q Consensus 67 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-~~~~i~~~~q~~~~~~~~~~~~~~~~~~- 144 (266)
++..+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ....++|++|+.+. . ..+.......
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~-~--~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFY-K--VLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGB-C--CCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCc-c--ccCHhHhhhhh
Confidence 3456899999999999999999999999999999999975 333221 12357889987531 1 1223222211
Q ss_pred -h-CC-----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529 145 -C-FP-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217 (266)
Q Consensus 145 -~-~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l 217 (266)
. +. ....+.+.+.++.+. .....++..||+||+||+++ ++++.+|+++|||||....|..- .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l----~~-- 152 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI----RD-- 152 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH----HT--
T ss_pred ccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHH----HH--
Confidence 1 10 012334455555431 22345678999999999988 68889999999999988887641 11
Q ss_pred hhcCCEEEEEecC-HHHHHhhcCEEEEEeCCe
Q 024529 218 VLFQGGILMVSHD-EHLISGSVEELWVVSEGK 248 (266)
Q Consensus 218 ~~~~~tiiivtHd-~~~~~~~~d~i~~l~~G~ 248 (266)
..+.+|+++||+ ......+++++ ++|+
T Consensus 153 -~~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 153 -MFHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp -TCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred -hcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 135689999997 44444455444 5554
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.85 E-value=5.8e-22 Score=169.37 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=95.4
Q ss_pred cEEEEeeEEEcCCCCcceeece-EEEeCCcEEEEECCCCchHHHHHHHHh--CCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529 55 IISFSDASFGYPGGPILFKNLN-FGIDLDSRIAMVGPNGIGKSTILKLIA--GELQPSSGTVFRSAKVRIAVFSQHHVDG 131 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vs-l~i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 131 (266)
++++++++..+++ |+.+- =.|++|++++|+||||||||||+++|+ |+.++.+|.+++.+...
T Consensus 6 ~~~~~~i~tg~~~----lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~----------- 70 (251)
T 2ehv_A 6 YQPVRRVKSGIPG----FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER----------- 70 (251)
T ss_dssp --CCCEECCSCTT----TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-----------
T ss_pred ccccceeecCCHh----HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC-----------
Confidence 4666777766642 33331 178999999999999999999999999 66456666555432110
Q ss_pred CCCCCcHHHHHHHhCCCCcHHHHHH--HHHhcC-------CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529 132 LDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFG-------VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202 (266)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~-------l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 202 (266)
. .......... ....+.... .+.... .............+.++......+.+-..+|++++|||||
T Consensus 71 ---~-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~ 145 (251)
T 2ehv_A 71 ---A-RDLRREMASF-GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIP 145 (251)
T ss_dssp ---H-HHHHHHHHTT-TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHH
T ss_pred ---H-HHHHHHHHHc-CCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHH
Confidence 0 0000000000 011110000 000000 0000000111233455655555555556899999999999
Q ss_pred CCCC-----HHHHHHH---HHHHhhcCCEEEEEecCHHHH---------Hhhc-CEEEEEe
Q 024529 203 NHLD-----LDAVEAL---IQGLVLFQGGILMVSHDEHLI---------SGSV-EELWVVS 245 (266)
Q Consensus 203 ~~LD-----~~~~~~l---~~~l~~~~~tiiivtHd~~~~---------~~~~-d~i~~l~ 245 (266)
++|| +..+..+ ++.+++.+.|||+|||+.+.+ ..+| |++++|+
T Consensus 146 ~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 146 SIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 9997 4444434 444556688999999999998 6788 9999995
No 96
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.85 E-value=1.7e-23 Score=173.53 Aligned_cols=140 Identities=21% Similarity=0.208 Sum_probs=98.3
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC---------eeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHH
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ 152 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (266)
|++++|+||||||||||+++|+|+++ ++| |.+++ ...++|++|... .. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~-g~---~~~-------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS-GT---RGP-------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT-SC---EEE--------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc-cc---eeh--------------
Confidence 78999999999999999999999998 888 76543 235778877641 10 000
Q ss_pred HHHHHHHhcCCCc------ccccCCCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhc
Q 024529 153 KLRAHLGSFGVTG------NLALQPMYTLSGGQKSRV-AFAK---ITFKKPHIILLDE--PSNHLDLDAVEALIQGLVLF 220 (266)
Q Consensus 153 ~~~~~l~~~~l~~------~~~~~~~~~LSgGqkqRv-~lAr---al~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~~ 220 (266)
+..+++.. ....++...+|+|||+++ ++++ |++.+|++||||| |++.+|+...+.+.+.+...
T Consensus 61 -----l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 61 -----LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp -----EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred -----hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 00111110 122345567999999988 4454 5899999999999 99999999988888888865
Q ss_pred CCEEE---EEecCH--HHHHhhcCEEEEEeCCeEE
Q 024529 221 QGGIL---MVSHDE--HLISGSVEELWVVSEGKAT 250 (266)
Q Consensus 221 ~~tii---ivtHd~--~~~~~~~d~i~~l~~G~i~ 250 (266)
..+|| .||||. .+++++++ +.+|+++
T Consensus 136 ~~~ilgti~vsh~~~~~~vd~i~~----~~~~~i~ 166 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVEEIRN----RKDVKVF 166 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHHHHHT----TCCSEEE
T ss_pred CcEEEEEeecCCCCchHHHHHHee----cCCcEEE
Confidence 44443 455987 56666654 4566664
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.84 E-value=5.8e-21 Score=161.18 Aligned_cols=153 Identities=15% Similarity=0.220 Sum_probs=85.8
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 157 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
-|++|++++|+||||||||||+++|+|+..+..|.....+ ...|+.... .........+.... ....+ .+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~--~~i~~~~~~----~~~~~~i~~~~~~~-~~~~~---~~ 90 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG--SVIWIDTEN----TFRPERIREIAQNR-GLDPD---EV 90 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSC--EEEEEESSS----CCCHHHHHHHHHHT-TSCHH---HH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC--EEEEEECCC----CCCHHHHHHHHHHc-CCCHH---HH
Confidence 6899999999999999999999999996655322211111 111222211 01111111222211 12222 22
Q ss_pred HHhcCCCcccccCCCCCCChHHH-HHHHHHHHHcc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHH
Q 024529 158 LGSFGVTGNLALQPMYTLSGGQK-SRVAFAKITFK-------KPHIILLDEPSNHLDLD-------A-----VEALIQGL 217 (266)
Q Consensus 158 l~~~~l~~~~~~~~~~~LSgGqk-qRv~lAral~~-------~p~lllLDEPt~~LD~~-------~-----~~~l~~~l 217 (266)
.+.+.+ ...++++++ +.+..++.++. +|+++++||||+++|+. . ...+++.|
T Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 91 LKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp HHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred hhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 222211 123444443 33555565555 99999999999999983 1 12344333
Q ss_pred ----hhcCCEEEEEec----CHHHHHhhcCEEEEEeCCe
Q 024529 218 ----VLFQGGILMVSH----DEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 218 ----~~~~~tiiivtH----d~~~~~~~~d~i~~l~~G~ 248 (266)
++.+.|||+||| +-..+..+||++++|++|+
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 345789999999 5555888999999998753
No 98
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=7.1e-21 Score=189.53 Aligned_cols=103 Identities=24% Similarity=0.319 Sum_probs=89.6
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCH
Q 024529 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDE 231 (266)
Q Consensus 157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~--p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~ 231 (266)
.|..+|+.....++++.+|||||+|||+||++|..+ |++|||||||++||+...+++++.|+ +.+.|||+||||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 467788864336789999999999999999999998 58999999999999999988887665 4578999999999
Q ss_pred HHHHhhcCEEEEE------eCCeEEecCCChhHHHH
Q 024529 232 HLISGSVEELWVV------SEGKATPFHGTFHDYKK 261 (266)
Q Consensus 232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 261 (266)
+++. .||+|++| ++|+++ +.|+++++.+
T Consensus 584 ~~i~-~ADrIi~Lgp~aG~~gG~iv-~~G~~~e~~~ 617 (993)
T 2ygr_A 584 DTIE-HADWIVDIGPGAGEHGGRIV-HSGPYDELLR 617 (993)
T ss_dssp HHHH-TCSEEEEECSSSGGGCCSCC-EEECHHHHHH
T ss_pred HHHH-hCCEEEEecCccccCCCEEE-EeeCHHHhhh
Confidence 9986 69999999 688886 7899998865
No 99
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.83 E-value=6.7e-21 Score=189.19 Aligned_cols=102 Identities=25% Similarity=0.299 Sum_probs=88.5
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCH
Q 024529 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDE 231 (266)
Q Consensus 157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~ 231 (266)
.|..+|+.....++++.+|||||+|||+||++|..+| ++|||||||++||+...+++++.|+ +.+.|||+||||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4778898643467899999999999999999999985 9999999999999999888877665 4578999999999
Q ss_pred HHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529 232 HLISGSVEELWVV------SEGKATPFHGTFHDYK 260 (266)
Q Consensus 232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 260 (266)
+++. .||+|++| ++|+++ +.|+++++.
T Consensus 567 ~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~ 599 (972)
T 2r6f_A 567 DTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVM 599 (972)
T ss_dssp HHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTT
T ss_pred HHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHH
Confidence 9986 69999999 688886 788887764
No 100
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.82 E-value=2e-20 Score=157.82 Aligned_cols=164 Identities=12% Similarity=0.039 Sum_probs=103.0
Q ss_pred CcceeeceE-EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529 69 PILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 147 (266)
Q Consensus 69 ~~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 147 (266)
...|+++.+ .+++|++++|+||||||||||++.|++...+.+|.+.+ +..+. ............
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~--------~~~~~------~~~~~~~~~~~~- 73 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY--------VTTEE------SRDSIIRQAKQF- 73 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE--------EESSS------CHHHHHHHHHHT-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE--------EEccc------CHHHHHHHHHHh-
Confidence 456888887 89999999999999999999999999887777776643 11110 000110000000
Q ss_pred CCcHHHHH-HHHHhcCC-Cccc-ccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHHHHHh--
Q 024529 148 GVPEQKLR-AHLGSFGV-TGNL-ALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHL--DLDAVEALIQGLV-- 218 (266)
Q Consensus 148 ~~~~~~~~-~~l~~~~l-~~~~-~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~L--D~~~~~~l~~~l~-- 218 (266)
....+... ..+..+.. .... ........|.++.++...+.+...+|+ ++++||||+.+ |+.....+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~ 153 (235)
T 2w0m_A 74 NWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRV 153 (235)
T ss_dssp TCCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHH
T ss_pred cchHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHH
Confidence 00000000 00000000 0000 000113459999998888888888999 99999999888 9877666666654
Q ss_pred --hcCCEEEEEecCH--------HHHHhhcCEEEEEeCC
Q 024529 219 --LFQGGILMVSHDE--------HLISGSVEELWVVSEG 247 (266)
Q Consensus 219 --~~~~tiiivtHd~--------~~~~~~~d~i~~l~~G 247 (266)
+.+.+||++||+. ..+..+||++++|+..
T Consensus 154 ~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 154 LNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 3467999999999 4588899999999753
No 101
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=1.6e-20 Score=185.57 Aligned_cols=103 Identities=26% Similarity=0.281 Sum_probs=88.9
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCH
Q 024529 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDE 231 (266)
Q Consensus 157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l---~~~~~tiiivtHd~ 231 (266)
.+..+|+.....++++.+|||||+|||+||++|+.+| .+|||||||++||+...+++++.+ ++.+.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5778999744367899999999999999999999999 599999999999999888887755 45578999999999
Q ss_pred HHHHhhcCEEEEE------eCCeEEecCCChhHHHH
Q 024529 232 HLISGSVEELWVV------SEGKATPFHGTFHDYKK 261 (266)
Q Consensus 232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 261 (266)
+++. .||+|++| ++|+++ +.|+++++.+
T Consensus 442 ~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKH 475 (842)
T ss_dssp HHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGG
T ss_pred HHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHh
Confidence 9876 69999999 688886 7899887743
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.80 E-value=5e-23 Score=172.48 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=103.4
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC---CCcHHHHH
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQKLR 155 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 155 (266)
.++|++++|+||||||||||+++|+|++.| .++|++|+.........+........+. ....+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 578999999999999999999999998765 4788888764221111223222211111 12356677
Q ss_pred HHHHhcCCCcccccCCCCCCChHH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHHHHhh----c
Q 024529 156 AHLGSFGVTGNLALQPMYTLSGGQ----KSRVAFAKITFKKPHIILLDEPSNH-------LDLDAVEALIQGLVL----F 220 (266)
Q Consensus 156 ~~l~~~~l~~~~~~~~~~~LSgGq----kqRv~lAral~~~p~lllLDEPt~~-------LD~~~~~~l~~~l~~----~ 220 (266)
++++.+++.+. ...++..+|+|| +||+++|++++.+|.++++||||++ ||+.....+.+.+.+ .
T Consensus 72 ~~l~~~~~~~~-~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLP-VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCC-EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCC-cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 88888887654 346788999996 4788999999999999999999999 898877777666654 3
Q ss_pred CCEEEEEecCH
Q 024529 221 QGGILMVSHDE 231 (266)
Q Consensus 221 ~~tiiivtHd~ 231 (266)
+.|+++++|+.
T Consensus 151 g~t~~~~~~~~ 161 (211)
T 3asz_A 151 GRSLEGVVAQY 161 (211)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67888899974
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.79 E-value=2.9e-22 Score=177.61 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=76.2
Q ss_pred EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC-CCCCceEEEEcC--------eeeEEEEecccc
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSA--------KVRIAVFSQHHV 129 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~~--------~~~i~~~~q~~~ 129 (266)
.||++.| +++.++++++|+| +|+||||||||||+++|+|. ..|++| +...+ ...+++++|...
T Consensus 2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 4789999 4567899999998 99999999999999999998 888888 54322 123566666431
Q ss_pred CC--CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC-CC
Q 024529 130 DG--LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH-LD 206 (266)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~-LD 206 (266)
.. +.+..++-... ... ..+....+.+. +. ...++++.++|||||||+.+|||++ ++++||||++ ||
T Consensus 74 ~~~~ltv~Dt~g~~~--~~~--~~e~~~~l~~~--l~-~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld 142 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGD--AIN--CRDCFKTIISY--ID-EQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLK 142 (301)
T ss_dssp CCEEEEEEEEC---------------CTTHHHH--HH-HHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred cccCcchhhhhhhhh--hcC--cHHHHHHHHHH--HH-HHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence 11 11111111000 000 00011111111 11 1123566789999999999999986 9999999985 99
Q ss_pred HHHHHHHHHHHhh-cCCEEEEEecCHH
Q 024529 207 LDAVEALIQGLVL-FQGGILMVSHDEH 232 (266)
Q Consensus 207 ~~~~~~l~~~l~~-~~~tiiivtHd~~ 232 (266)
+... .++..+.. .+.++|+++||+.
T Consensus 143 ~~~~-~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 143 PLDV-AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHH-HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHH-HHHHHHHhcCCEEEEEEeCCCC
Confidence 9875 45555543 2457899999973
No 104
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.79 E-value=1.6e-20 Score=185.37 Aligned_cols=161 Identities=19% Similarity=0.135 Sum_probs=98.6
Q ss_pred cEEEEeeEEEcC----CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEecccc
Q 024529 55 IISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHV 129 (266)
Q Consensus 55 ~l~~~~l~~~y~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~ 129 (266)
.+.+++...-.- ++..+++|++|+ ++|++++|+||||||||||||+|+|+.. ...|.........+++++|-
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i-- 653 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI-- 653 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH--
Confidence 466666532110 235689999999 9999999999999999999999999742 22232111111122222220
Q ss_pred CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529 130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209 (266)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~ 209 (266)
+..++..+.. ....+++|+++++ ++.+..++.+|+++||||||+|+|+..
T Consensus 654 ----------------------------~~~~~~~d~l-~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 654 ----------------------------FTRVGAADDL-ASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ----------------------------EEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred ----------------------------HhhCCHHHHH-HhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 1112221111 1233567777765 444455689999999999988888754
Q ss_pred H----HHHHHHHhh-cCCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529 210 V----EALIQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKA 249 (266)
Q Consensus 210 ~----~~l~~~l~~-~~~tiiivtHd~~~~~~~~d~i~~l~~G~i 249 (266)
. ..+++.+.+ .+.++|++||+.++.. +||++..+.+|++
T Consensus 704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 704 GLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEE
Confidence 3 345666666 4789999999998765 7876544444443
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=1.9e-20 Score=155.85 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=95.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-----CCCceEEEEcCee----eEEEEe
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAKV----RIAVFS 125 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~~~~----~i~~~~ 125 (266)
+|+++|+++.|+ . .++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+.. .+.++
T Consensus 3 ~l~~~~~~~~~~-~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~- 77 (210)
T 1pui_A 3 NLNYQQTHFVMS-A-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV- 77 (210)
T ss_dssp --------CEEE-E-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-
T ss_pred chhhhhhhheee-c-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-
Confidence 588999999994 3 56777 889999999999999999999999999998 7888876532111 01111
Q ss_pred ccccCCCC-----CCC-cH----HHHHHHhC-------------CCCc--HHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 024529 126 QHHVDGLD-----LSS-NP----LLYMMRCF-------------PGVP--EQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180 (266)
Q Consensus 126 q~~~~~~~-----~~~-~~----~~~~~~~~-------------~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 180 (266)
..+ +.. ... .. ...+.... .... ..++..++...++.......++..+|+||+
T Consensus 78 Dt~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~ 155 (210)
T 1pui_A 78 DLP--GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR 155 (210)
T ss_dssp ECC--CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH
T ss_pred ECc--CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhH
Confidence 100 110 000 00 11111100 0111 234556667777764333456788999999
Q ss_pred HH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 181 SR-VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 181 qR-v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
|| +..+++++.+|+++++|||||++|..+...+++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 99 8999999999999999999999999999998888765
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.78 E-value=1.5e-20 Score=170.07 Aligned_cols=144 Identities=18% Similarity=0.156 Sum_probs=93.6
Q ss_pred eeEEEcC-CCCcceeeceE-------EEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-ceEEEEcCeeeEEEEeccccC
Q 024529 60 DASFGYP-GGPILFKNLNF-------GIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVD 130 (266)
Q Consensus 60 ~l~~~y~-~~~~~l~~vsl-------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~ 130 (266)
.++++|. .....|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ .|.|... .++..
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~---------ed~~e 163 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI---------EDPIE 163 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE---------ESSCC
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc---------cCcHH
Confidence 4444442 22344566665 67889999999999999999999999999887 5655321 11111
Q ss_pred CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 024529 131 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210 (266)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~ 210 (266)
. ..... .. .+.... .....++-.+ +||+||..+|++|++|||| |.++.
T Consensus 164 ~-~~~~~---------~~-------------~v~q~~--~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~ 211 (356)
T 3jvv_A 164 F-VHESK---------KC-------------LVNQRE--VHRDTLGFSE----ALRSALREDPDIILVGEMR---DLETI 211 (356)
T ss_dssp S-CCCCS---------SS-------------EEEEEE--BTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred h-hhhcc---------cc-------------ceeeee--eccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH
Confidence 0 00000 00 000000 0001223322 9999999999999999999 78876
Q ss_pred HHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 211 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 211 ~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
..+.+.. ..+.+||+++|+.+.+ ..|||++.|..
T Consensus 212 ~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 212 RLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred HHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 6666653 4478999999999988 57888876643
No 107
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.78 E-value=2.3e-18 Score=140.57 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=75.7
Q ss_pred cCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEE
Q 024529 169 LQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW 242 (266)
Q Consensus 169 ~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~ 242 (266)
.+++..||||||||++||++|+ .+|+++||||||++||+.+...+.+.+++. +.++|+|||+.... .+||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence 4567899999999999999997 457999999999999999999999988765 35899999998765 5899998
Q ss_pred EE--eCCeEEecCCChhHHHH
Q 024529 243 VV--SEGKATPFHGTFHDYKK 261 (266)
Q Consensus 243 ~l--~~G~i~~~~g~~~~~~~ 261 (266)
.+ .+|.......+.+++.+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHH
Confidence 55 57876555666666544
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.77 E-value=5.1e-19 Score=154.69 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=94.5
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC----eeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 153 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (266)
.+++|++++|+||||||||||++.|++... .|.++... ...+.|+..+.. . ......+...........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~----~-~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP----P-TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC----H-HHHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC----H-HHHHHHHHHHHhhcChhh
Confidence 378999999999999999999999998654 34432210 123445443211 0 001111111111234455
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---HHHHHHHHh----hcCCEE
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN--HLDLDA---VEALIQGLV----LFQGGI 224 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~--~LD~~~---~~~l~~~l~----~~~~ti 224 (266)
...+++.+.+.+ ..++++..||+||++++ ++++.+|+++++||||+ ++|... ...+++.|. +.+.||
T Consensus 99 ~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 666778887764 45678899999997765 68888999999999999 999732 245544443 457899
Q ss_pred EEEecCHHHHH
Q 024529 225 LMVSHDEHLIS 235 (266)
Q Consensus 225 iivtHd~~~~~ 235 (266)
|+++|+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999987653
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.74 E-value=7.1e-18 Score=141.21 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=94.4
Q ss_pred cceeeceE-EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC
Q 024529 70 ILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 148 (266)
Q Consensus 70 ~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
..|+.+.. .+++|++++|+||||||||||++.|++ .+. +.+ .|+..+. ......+....... .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~~v--------~~i~~~~----~~~~~~~~~~~~~~-~ 70 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-KKV--------AYVDTEG----GFSPERLVQMAETR-G 70 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-SEE--------EEEESSC----CCCHHHHHHHHHTT-T
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-CcE--------EEEECCC----CCCHHHHHHHHHhc-C
Confidence 34666655 689999999999999999999999999 222 222 2332211 01111111111111 1
Q ss_pred CcHHHHHHHHHhcCCCcccccCCCCCCChHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHH--------HHHHHHHHH
Q 024529 149 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ--KSRVAFAKITFKK-PHIILLDEPSNHLDLD--------AVEALIQGL 217 (266)
Q Consensus 149 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--kqRv~lAral~~~-p~lllLDEPt~~LD~~--------~~~~l~~~l 217 (266)
...+. +++.+ .+..+|+++ +++++.+++++.+ |+++++||||+.+|+. ....+++.|
T Consensus 71 ~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L 138 (220)
T 2cvh_A 71 LNPEE---ALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVL 138 (220)
T ss_dssp CCHHH---HHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHH
T ss_pred CChHH---HhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHH
Confidence 11111 22211 223455554 5688888999986 9999999999999973 223333333
Q ss_pred ----hhcCCEEEEEecCHH-------------HHHhhcCEEEEEeCC
Q 024529 218 ----VLFQGGILMVSHDEH-------------LISGSVEELWVVSEG 247 (266)
Q Consensus 218 ----~~~~~tiiivtHd~~-------------~~~~~~d~i~~l~~G 247 (266)
++.+.+||+++|... .+..+||.+++|+..
T Consensus 139 ~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 139 LWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 345789999999865 577899999999753
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.5e-19 Score=166.68 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=88.4
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce--EEEEc-----CeeeEEEEec
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG--TVFRS-----AKVRIAVFSQ 126 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G--~i~~~-----~~~~i~~~~q 126 (266)
.+|.++||++.|+ +..+++++||+| +|+|+||||||||+++|+|...|..| .+... ....+++++|
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 4699999999994 567899999998 99999999999999999999875444 11111 1123566666
Q ss_pred cccCC--CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC---EEEEeCC
Q 024529 127 HHVDG--LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH---IILLDEP 201 (266)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~---lllLDEP 201 (266)
..... +.+..++..... .........+.+.++ ..++.+++||++|||+++.+|+ +|++|||
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDA-VDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp ----CEEEEEEECC------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred cCCcccceeeeechhhhhh-ccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 43211 111111111000 000000011111111 1355677789999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 024529 202 S-NHLDLDAVEALIQGLVLFQGGILMVSHDEH 232 (266)
Q Consensus 202 t-~~LD~~~~~~l~~~l~~~~~tiiivtHd~~ 232 (266)
| ++||+... .+++.+.. +..||+|.|..+
T Consensus 149 t~~~L~~~d~-~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 149 SGHGLKPLDI-EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp -CCSCCHHHH-HHHHHHTT-TSEEEEEEESTT
T ss_pred cccCCCHHHH-HHHHHHhc-cCcEEEEEEccc
Confidence 9 69999874 44555654 567777777544
No 111
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.72 E-value=1.9e-20 Score=180.54 Aligned_cols=170 Identities=14% Similarity=0.197 Sum_probs=90.1
Q ss_pred CcEEEEeeEEEcCCC-Ccceeec----------eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCe---
Q 024529 54 PIISFSDASFGYPGG-PILFKNL----------NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK--- 118 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~-~~~l~~v----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~--- 118 (266)
+.+.++|+++.|++. +++++.+ +|+++. ++|+|||||||||||++|+|+..| ++|.|.+.+.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 358899999999532 2344444 366654 999999999999999999999988 7999976653
Q ss_pred -----------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 119 -----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 119 -----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
..++|++|+.. +....+.. +.+......++... ..+| ++++.++.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~------------e~i~~~~~~~~~~~-------~~~s---~~~i~l~i 141 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIE--ISDASEVE------------KEINKAQNAIAGEG-------MGIS---HELITLEI 141 (608)
T ss_dssp EEECSSSSCCEEEESCC---CC--CCCHHHHH------------TTHHHHHHHHHCSS-------SCCC---SCCEEEEE
T ss_pred EecCCccccceeEEeeeccccc--CCCHHHHH------------HHHHHHHHHhcCCc-------cccc---hHHHHHHh
Confidence 23566666532 11000110 01111111111110 0111 12233334
Q ss_pred HHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHHH--------Hhh----cCEEEEE
Q 024529 188 ITFKKPHIILLDEP------SNHLDLDAVEALIQGLVLF-----QGGILMVSHDEHLI--------SGS----VEELWVV 244 (266)
Q Consensus 188 al~~~p~lllLDEP------t~~LD~~~~~~l~~~l~~~-----~~tiiivtHd~~~~--------~~~----~d~i~~l 244 (266)
+....|+++|+||| |++||+.....+.+.+.++ ..+++++|||.+.+ ..+ +..|+++
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence 44568999999999 9999999888888777664 24689999997633 222 3457888
Q ss_pred eCCeEE
Q 024529 245 SEGKAT 250 (266)
Q Consensus 245 ~~G~i~ 250 (266)
.++.++
T Consensus 222 TK~Dlv 227 (608)
T 3szr_A 222 TKPDLV 227 (608)
T ss_dssp ECGGGS
T ss_pred cchhhc
Confidence 877654
No 112
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.72 E-value=8.4e-18 Score=159.27 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCCCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEE
Q 024529 170 QPMYTL-SGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV 244 (266)
Q Consensus 170 ~~~~~L-SgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l 244 (266)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|.+. +.+||+||||++++. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456778 999999999999999999 999999999999999999888877654 679999999999886 69999999
Q ss_pred eCC
Q 024529 245 SEG 247 (266)
Q Consensus 245 ~~G 247 (266)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 554
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.70 E-value=5.7e-19 Score=156.59 Aligned_cols=155 Identities=16% Similarity=0.076 Sum_probs=91.5
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------eeEEEEeccccCCCCCCCcHHHHHH
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLSSNPLLYMM 143 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~~~~~~~~~~ 143 (266)
+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|.+. .....+....+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 68999999999999999999999999999999987542 12556666431 110001111111
Q ss_pred HhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc
Q 024529 144 RCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVLF 220 (266)
Q Consensus 144 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~~ 220 (266)
... ...+ ..+++..|... .....++..++||++||||++.+|+ +|.|| |+++.+... .+...-...
T Consensus 179 ~~~~~~~d----~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~--~~~~~~~~~ 247 (304)
T 1rj9_A 179 AMKARGYD----LLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE--QAKKFHEAV 247 (304)
T ss_dssp HHHHHTCS----EEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH--HHHHHHHHH
T ss_pred HHHhCCCC----EEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH--HHHHHHHHc
Confidence 000 0000 00112222211 1112345566999999999999999 66777 666655332 222222344
Q ss_pred CCEEEEEecCHHHHH---------hhcCEEEEEeCCe
Q 024529 221 QGGILMVSHDEHLIS---------GSVEELWVVSEGK 248 (266)
Q Consensus 221 ~~tiiivtHd~~~~~---------~~~d~i~~l~~G~ 248 (266)
+.|+|++||+..... ...-.|..+..|+
T Consensus 248 ~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 248 GLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp CCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred CCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 789999999854221 1123566666665
No 114
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.70 E-value=1.7e-17 Score=149.91 Aligned_cols=154 Identities=14% Similarity=0.202 Sum_probs=91.3
Q ss_pred ceeec-eEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCc----eE-EEEcCeeeEEEEeccccCCCCCCCcHHHHH
Q 024529 71 LFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSS----GT-VFRSAKVRIAVFSQHHVDGLDLSSNPLLYM 142 (266)
Q Consensus 71 ~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~----G~-i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 142 (266)
.|+.+ ++.|++|++++|+||||||||||++.|++.. +|++ |. |++++. .. +....+..+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e---------~~----~~~~~i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE---------NT----FRPERIREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS---------SC----CCHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC---------CC----CCHHHHHHH
Confidence 45665 6899999999999999999999999999988 6776 45 443321 10 010111112
Q ss_pred HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH------
Q 024529 143 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-------KKPHIILLDEPSNHLDLDA------ 209 (266)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~-------~~p~lllLDEPt~~LD~~~------ 209 (266)
.... ..... .+++.+-+. .. .-|.+++|++.++++++ .+|++||+||||+++|+..
T Consensus 186 ~q~~-~~~~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~ 254 (349)
T 1pzn_A 186 AQNR-GLDPD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 254 (349)
T ss_dssp HHTT-TCCHH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTH
T ss_pred HHHc-CCCHH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccH
Confidence 2211 22222 223222111 11 12678999999999998 6899999999999999852
Q ss_pred ------HHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 210 ------VEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 210 ------~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
...++..|. +.+.|||+++|........++.......|+
T Consensus 255 ~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~ 303 (349)
T 1pzn_A 255 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGH 303 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcc
Confidence 234444443 357899999998875543333333334444
No 115
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.70 E-value=1.6e-18 Score=157.90 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=85.5
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-ceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 149 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 149 (266)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|...+. +.. +..... ..-.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~---------~~e-~~~~~~--------~~~v 186 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED---------PIE-YVFKHK--------KSIV 186 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES---------SCC-SCCCCS--------SSEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc---------cHh-hhhccC--------ceEE
Confidence 566665 7899999999999999999999999999997 898854221 110 000000 0000
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec
Q 024529 150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH 229 (266)
Q Consensus 150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtH 229 (266)
.+ ..+++. +..| +.+|+++|..+|+++++|||+ |+++...+++.. ..+.+|+.++|
T Consensus 187 ~Q-------~~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H 242 (372)
T 2ewv_A 187 NQ-------REVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLH 242 (372)
T ss_dssp EE-------EEBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCC
T ss_pred Ee-------eecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEEC
Confidence 00 012221 2344 469999999999999999999 888766655554 34678999999
Q ss_pred CHHHHHhhcCEE
Q 024529 230 DEHLISGSVEEL 241 (266)
Q Consensus 230 d~~~~~~~~d~i 241 (266)
+.+ +...|||+
T Consensus 243 ~~~-~~~~~~rl 253 (372)
T 2ewv_A 243 TNT-AIDTIHRI 253 (372)
T ss_dssp CCS-HHHHHHHH
T ss_pred cch-HHHHHHHH
Confidence 866 44456654
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.68 E-value=9.8e-19 Score=148.12 Aligned_cols=144 Identities=11% Similarity=0.173 Sum_probs=86.1
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCee-------eEEEEeccccCCCCCCCcHHHHHHHhC
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAKV-------RIAVFSQHHVDGLDLSSNPLLYMMRCF 146 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~~-------~i~~~~q~~~~~~~~~~~~~~~~~~~~ 146 (266)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.++. .++|++|+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~------------------- 70 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVN------------------- 70 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECC-------------------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECC-------------------
Confidence 446789999999999999999999999999986 67777654321 12222221
Q ss_pred CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 024529 147 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILM 226 (266)
Q Consensus 147 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiii 226 (266)
..........-.+.+... ....+.|-.+++ +..++..++++||| ||+.+...+.+.+. .+.+|++
T Consensus 71 ----~~~f~~~~~~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i 135 (219)
T 1s96_A 71 ----HDEFKEMISRDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFI 135 (219)
T ss_dssp ----HHHHHHHHHTTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEE
T ss_pred ----HHHHHHHHhcCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEE
Confidence 111111111000011110 001111111222 34556678999999 99999999999887 3668999
Q ss_pred EecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529 227 VSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 263 (266)
Q Consensus 227 vtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 263 (266)
+||+++.+.. |+ +.+| .++.+++.+.+
T Consensus 136 ~th~~~~l~~---Rl--~~rG-----~~~~e~i~~rl 162 (219)
T 1s96_A 136 LPPSKIELDR---RL--RGRG-----QDSEEVIAKRM 162 (219)
T ss_dssp ECSSHHHHHH---HH--HTTS-----CSCHHHHHHHH
T ss_pred ECCCHHHHHH---HH--HHcC-----CCCHHHHHHHH
Confidence 9999998875 32 4555 35666665443
No 117
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.68 E-value=1.8e-18 Score=156.95 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=100.8
Q ss_pred EEEeeEEE---cCC-CCcce---------eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEE
Q 024529 57 SFSDASFG---YPG-GPILF---------KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAV 123 (266)
Q Consensus 57 ~~~~l~~~---y~~-~~~~l---------~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~ 123 (266)
++++++|+ |++ ...+| +++||.+++|++++|+||||||||||+++|+|+++|++|.|.+++...
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e--- 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE--- 213 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC---
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc---
Confidence 66777877 742 12344 999999999999999999999999999999999999999998754210
Q ss_pred EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~ 203 (266)
+..... .. .+++- ........++++..++-.|+.++..+|+.+++|||..
T Consensus 214 --------~~~~~~---------~~-----------~v~~v--~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 214 --------LFLPDH---------PN-----------HVHLF--YPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRG 263 (361)
T ss_dssp --------CCCTTC---------SS-----------EEEEE--CC----------CCHHHHHHHHTTSCCSEEEESCCCS
T ss_pred --------cCcccc---------CC-----------EEEEe--ecCccccccccccCHHHHHHHHHhcCCCEEEEcCchH
Confidence 000000 00 00000 0000000124555688899999999999999999985
Q ss_pred CCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529 204 HLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248 (266)
Q Consensus 204 ~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~ 248 (266)
. ....+++.+..-..+++.++|+.+ +...++|+..+..+.
T Consensus 264 ~----~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 G----EAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp T----HHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred H----HHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 2 223344444432347889999965 566788887776654
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.65 E-value=1.4e-15 Score=129.00 Aligned_cols=145 Identities=14% Similarity=0.266 Sum_probs=80.5
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhC--CCCC-----CceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAG--ELQP-----SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p-----~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++++. . ......+....... ...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~---------~----~~~~~~~~~~~~~~-g~~ 85 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE---------G----TFRPERLLAVAERY-GLS 85 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS---------S----CCCHHHHHHHHHHT-TCC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC---------C----CcCHHHHHHHHHHc-CCC
Confidence 488999999999999999999999999 5655 3455543221 0 00101111111111 122
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHHHH-HHHHHHHc--cCCCEEEEeCCCCCCCHH-------H-----HHHHHH
Q 024529 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR-VAFAKITF--KKPHIILLDEPSNHLDLD-------A-----VEALIQ 215 (266)
Q Consensus 151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR-v~lAral~--~~p~lllLDEPt~~LD~~-------~-----~~~l~~ 215 (266)
.+. +++.+.+ ....+..+... +.-+..++ .+|+++++|||++.+|+. + ...++.
T Consensus 86 ~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 154 (243)
T 1n0w_A 86 GSD---VLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR 154 (243)
T ss_dssp HHH---HHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHH
T ss_pred HHH---HhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 221 2222111 12355555433 22233333 589999999999999975 2 233433
Q ss_pred HHh----hcCCEEEEEecCHHHHHh-------------------hcCEEEEEeCC
Q 024529 216 GLV----LFQGGILMVSHDEHLISG-------------------SVEELWVVSEG 247 (266)
Q Consensus 216 ~l~----~~~~tiiivtHd~~~~~~-------------------~~d~i~~l~~G 247 (266)
.|. +.+.|||+++|....... +||.+++|+.+
T Consensus 155 ~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 155 MLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 333 357899999997665433 79999999864
No 119
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.64 E-value=8.7e-16 Score=139.64 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=66.7
Q ss_pred CCCCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcCE
Q 024529 170 QPMYTLSGGQKSRV------AFAKITFKK-PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEE 240 (266)
Q Consensus 170 ~~~~~LSgGqkqRv------~lAral~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~~~~~d~ 240 (266)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.+.+.. .+||+|||+.+ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 46679999999988 567899999 99999999999999999999999998753 48999999987 4678999
Q ss_pred EEEEe
Q 024529 241 LWVVS 245 (266)
Q Consensus 241 i~~l~ 245 (266)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.61 E-value=1.7e-18 Score=157.10 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=95.7
Q ss_pred eeeceEEEeC--CcEEEEECCCCchHHHHHHHHhCCCCCCc----eEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHh
Q 024529 72 FKNLNFGIDL--DSRIAMVGPNGIGKSTILKLIAGELQPSS----GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC 145 (266)
Q Consensus 72 l~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~----G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 145 (266)
.+.|+++|.+ |++++|+||||||||||+++|+|+++|++ |++++.+.. ..... ..... .+..+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-----~~~~~-~~~~~--~~~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-----GGDEQ-AMQYS--DYPQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-----SSCTT-SSCTT--THHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-----CCCcc-cCChh--HHHHHHHH
Confidence 5679999999 99999999999999999999999999998 766432100 00000 01111 11111111
Q ss_pred CCCCcHHHHHHHHHhcCC-CcccccCCCCCCChHHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHHH
Q 024529 146 FPGVPEQKLRAHLGSFGV-TGNLALQPMYTLSGGQKSRVAFAKITF-KKPHIILLDE---PS------NHLDLDAVEALI 214 (266)
Q Consensus 146 ~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~LSgGqkqRv~lAral~-~~p~lllLDE---Pt------~~LD~~~~~~l~ 214 (266)
... .........+.+.+ .....+..+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+.
T Consensus 230 ~q~-~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~ 308 (365)
T 1lw7_A 230 HQR-YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ 308 (365)
T ss_dssp HHH-HHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHH
T ss_pred HHH-HHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHH
Confidence 000 00000011111111 001111223456778888888888774 6999999999 65 588988888877
Q ss_pred HHHh----hcCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529 215 QGLV----LFQGGILMVSHDEHLISGSVEELWVVS 245 (266)
Q Consensus 215 ~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~ 245 (266)
+.+. +.+.+||+++|. ....++++++.+++
T Consensus 309 ~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 309 QLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 7763 336789999986 34556666665553
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.59 E-value=1.1e-18 Score=143.40 Aligned_cols=136 Identities=14% Similarity=0.036 Sum_probs=78.9
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeee---------EEEEeccccCCCCCCCcHHHHHHHhC--
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR---------IAVFSQHHVDGLDLSSNPLLYMMRCF-- 146 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~---------i~~~~q~~~~~~~~~~~~~~~~~~~~-- 146 (266)
.+++|++++|+||||||||||+++|+|. |..|.|.+++... ++|++|.... ..+....+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQ----NRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHH----HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhh----hHHHHHHHHHHHHH
Confidence 4779999999999999999999999997 7889888765321 1222221100 000111110000
Q ss_pred ---CCCcHHHHHHHHHhcCCCcccc--cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 024529 147 ---PGVPEQKLRAHLGSFGVTGNLA--LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 221 (266)
Q Consensus 147 ---~~~~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 221 (266)
.+.. ..+..++..+++. ... +.++..+|+|++|+++++|++..+|+++ +|+.....+.+.+....
T Consensus 79 ~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 79 YAKEGYF-VILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp HHHTSCE-EEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred HhccCCe-EEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 0000 0000000011111 111 3355689999999999999999999876 68888888777775432
Q ss_pred --CEEEEEec
Q 024529 222 --GGILMVSH 229 (266)
Q Consensus 222 --~tiiivtH 229 (266)
..+++.|+
T Consensus 149 ~~~~~~i~t~ 158 (191)
T 1zp6_A 149 AFEHHVLPVS 158 (191)
T ss_dssp GGGGGEEECT
T ss_pred cccccEEECC
Confidence 23445554
No 122
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.59 E-value=2.8e-15 Score=138.79 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=65.5
Q ss_pred CCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEE
Q 024529 171 PMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWV 243 (266)
Q Consensus 171 ~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~ 243 (266)
++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.+.+. +.++|+|||+..++. .||+++.
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~-~~d~~~~ 408 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVG 408 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-hCCEEEE
Confidence 34569999999999999999 589999999999999999999999998775 358999999987654 7999998
Q ss_pred Ee
Q 024529 244 VS 245 (266)
Q Consensus 244 l~ 245 (266)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.54 E-value=3.8e-17 Score=140.10 Aligned_cols=131 Identities=26% Similarity=0.273 Sum_probs=80.9
Q ss_pred CCcEEEEECCCCchHHHHHHHHh---CCCCCCceEEEEcCe---e----eEEEEeccccCCCCCCCcHHHHHHHh-----
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVFRSAK---V----RIAVFSQHHVDGLDLSSNPLLYMMRC----- 145 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~~~---~----~i~~~~q~~~~~~~~~~~~~~~~~~~----- 145 (266)
++++++|+||||||||||+++|+ |+..|+.|+|.+.+. . .+.+++|+.. +....+....+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSL--LVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 999999998865431 0 1122233221 11111111111110
Q ss_pred -----CCC--CcHHHHHHHHH--hcCC-----------CcccccCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----C
Q 024529 146 -----FPG--VPEQKLRAHLG--SFGV-----------TGNLALQPMYTLSGGQKSRVAFAKIT-FKKPHIILLD----E 200 (266)
Q Consensus 146 -----~~~--~~~~~~~~~l~--~~~l-----------~~~~~~~~~~~LSgGqkqRv~lAral-~~~p~lllLD----E 200 (266)
..+ ....++..+.. .+++ .....++++..||| |+ +++ +.+|++++|| |
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 001 12222333322 2220 01233566788999 65 677 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHhhc
Q 024529 201 PSNHLDLDAVEALIQGLVLF 220 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~ 220 (266)
||++||+.+...+.+.+..+
T Consensus 177 P~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHH
Confidence 99999998887777766554
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=5.3e-16 Score=142.82 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=95.3
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcE--EEEECCCCchHHHHHHHHhCCCCCCceEEEE---cC--eeeEEEEecc
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SA--KVRIAVFSQH 127 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~---~~--~~~i~~~~q~ 127 (266)
.+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+++|+|+.- .|.-.. .+ ...++|++|+
T Consensus 16 ~l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 366677 88895 445 9999999999999 99999999999999999999841 121111 01 2357888886
Q ss_pred ccC--CCCCCCcHHH--H--HHHhCC---CCcHHHHHHHHHhc-CCCcc---cccCC-----------CCCCChHHHHHH
Q 024529 128 HVD--GLDLSSNPLL--Y--MMRCFP---GVPEQKLRAHLGSF-GVTGN---LALQP-----------MYTLSGGQKSRV 183 (266)
Q Consensus 128 ~~~--~~~~~~~~~~--~--~~~~~~---~~~~~~~~~~l~~~-~l~~~---~~~~~-----------~~~LSgGqkqRv 183 (266)
... .+++..++.. . ....+. ..-...+.+++... ++... ..+.+ ...|+-.. +
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 421 1111111000 0 000000 00122344445443 33211 01111 12466555 7
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCH
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDE 231 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~ 231 (266)
.++++|..+++|+++|||+..|.+.....+.+.+. ..+.+|+.+|.|-
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 99999999999999999999999887766655554 3456788888653
No 125
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.54 E-value=7e-20 Score=150.79 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=89.9
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (266)
|++++|+||||||||||+++|++ |.+|.+++++.. ..++++|... .....+....+ ...+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l--------~~~~~~ 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNI--------TDLTVN 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHH--------HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHH--------HHHHHH
Confidence 68999999999999999999997 667887765421 1122222110 00000000000 000111
Q ss_pred HHHhcCCC---c----ccccCCCCCC--ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-
Q 024529 157 HLGSFGVT---G----NLALQPMYTL--SGGQKSRVAFAK------ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF- 220 (266)
Q Consensus 157 ~l~~~~l~---~----~~~~~~~~~L--SgGqkqRv~lAr------al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~- 220 (266)
.+. -+.. + ....+....+ |+|++|++.++. +++.+|+...+|+ +||+..... ++.+...
T Consensus 69 ~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 69 FLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp HHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred HHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 111 1100 0 0000112234 888888887777 8888888888884 899877666 6655543
Q ss_pred --CCEEEEEecC-HHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529 221 --QGGILMVSHD-EHLISGSVEELWVVSEGKATPFHGTFHDYK 260 (266)
Q Consensus 221 --~~tiiivtHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 260 (266)
+.++|.+||. ++.++.+||+|+ ++|+++ +.|+++.+.
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~~ 183 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPLE 183 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC-------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCchh
Confidence 4589999999 999999999998 999986 678876653
No 126
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.53 E-value=1.2e-15 Score=140.45 Aligned_cols=143 Identities=23% Similarity=0.255 Sum_probs=88.0
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-----------CCCceEEEEcCeeeEEEEeccccCCCCCCCcHHH
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL 140 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~ 140 (266)
-++++|+++.|+.++|+|+|||||||||++|+|.. .|+.|.|...+...+ .+.+.+ .+. ....
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~-~l~Dtp--Gli--~~a~- 220 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF-TLADIP--GII--EGAS- 220 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEE-EEEECC--CCC--CCGG-
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceE-EEEecc--ccc--cchh-
Confidence 47999999999999999999999999999999983 344454443321111 111211 110 0000
Q ss_pred HHHHhCCCCcHHH------HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH---H
Q 024529 141 YMMRCFPGVPEQK------LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV---E 211 (266)
Q Consensus 141 ~~~~~~~~~~~~~------~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~---~ 211 (266)
......... +..++..+++. +.++.+||+|++|++++|++|+..|.+|++ |.+|+... .
T Consensus 221 ----~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~ 288 (416)
T 1udx_A 221 ----EGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK 288 (416)
T ss_dssp ----GSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred ----hhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence 000111111 11123333332 356778999999999999999999999999 99998644 2
Q ss_pred HHHHHHhhcCCEEEEEe-cCHH
Q 024529 212 ALIQGLVLFQGGILMVS-HDEH 232 (266)
Q Consensus 212 ~l~~~l~~~~~tiiivt-Hd~~ 232 (266)
.+.+.+.+.+.+++++| |..+
T Consensus 289 ~l~~~l~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 289 ALADALAREGLAVLPVSALTGA 310 (416)
T ss_dssp HHHHHHHTTTSCEEECCTTTCT
T ss_pred HHHHHHHhcCCeEEEEECCCcc
Confidence 23333444455666555 4433
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.52 E-value=8.3e-17 Score=129.49 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=51.5
Q ss_pred EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (266)
Q Consensus 58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~ 117 (266)
..++++.| ++..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|...+
T Consensus 10 ~~~~~~~~-g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 10 DEFSMLRF-GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp SHHHHHHH-HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred CHHHHHHH-HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 35667788 4456899999999999999999999999999999999999 9999998665
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=8.1e-18 Score=151.27 Aligned_cols=158 Identities=14% Similarity=0.050 Sum_probs=102.1
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------e
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~ 119 (266)
+|+++++++.|+ ...+++++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+. .
T Consensus 29 ~ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HHeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 467788888883 456899999999999999999999999999999999999999999975431 1
Q ss_pred eEEEEeccccCCCCCC---Cc-------HHH-------------------------HHHHh-------CCCCcHHH----
Q 024529 120 RIAVFSQHHVDGLDLS---SN-------PLL-------------------------YMMRC-------FPGVPEQK---- 153 (266)
Q Consensus 120 ~i~~~~q~~~~~~~~~---~~-------~~~-------------------------~~~~~-------~~~~~~~~---- 153 (266)
++++++|++....... .. ... .+... ......+.
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 3455665432110000 00 000 00000 00000000
Q ss_pred ---HHHHHHhcCCCccccc-CCCCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 154 ---LRAHLGSFGVTGNLAL-QPMYTLSGGQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 154 ---~~~~l~~~~l~~~~~~-~~~~~LSgGqkqRv~lAral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
+.+....+.+. ..+ .+...+|+|++|++..|++++. .|+++. ||++|..+...+++.+.+
T Consensus 188 ~~~i~~~~~ivvlN--K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 188 KKGIFELADMIAVN--KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CTTHHHHCSEEEEE--CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHhccccEEEEE--chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 11111122221 122 1234689999999999999987 688876 999999998888887765
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.50 E-value=1.6e-13 Score=125.85 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=81.6
Q ss_pred EEeCCcEEEEECCCCchHHHHHH--HHhCCCCCCce-----EEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILK--LIAGELQPSSG-----TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~--~l~Gl~~p~~G-----~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
-|++|++++|+||||||||||++ ++.++.+++.| .+++++ +. .+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~---------E~----~~~--------------- 225 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT---------EG----TFR--------------- 225 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES---------SS----CCC---------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC---------CC----ccC---------------
Confidence 58899999999999999999999 44677776544 333221 11 011
Q ss_pred HHHHHHHHHhcCCCcc--cccCCCCCCChHHH--HHHHHHHHHc--cCCCEEEEeCCCCCCCHHHH------------HH
Q 024529 151 EQKLRAHLGSFGVTGN--LALQPMYTLSGGQK--SRVAFAKITF--KKPHIILLDEPSNHLDLDAV------------EA 212 (266)
Q Consensus 151 ~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqk--qRv~lAral~--~~p~lllLDEPt~~LD~~~~------------~~ 212 (266)
..++....+.+++... +.+-.+.....++. +.+.-+..++ .+|+++++|||++.+|.... ..
T Consensus 226 ~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~ 305 (400)
T 3lda_A 226 PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAK 305 (400)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHH
Confidence 1112222223333210 00001111222333 3333333332 57999999999999996422 33
Q ss_pred HHHHH----hhcCCEEEEEecCH-------------------HHHHhhcCEEEEEeCCe
Q 024529 213 LIQGL----VLFQGGILMVSHDE-------------------HLISGSVEELWVVSEGK 248 (266)
Q Consensus 213 l~~~l----~~~~~tiiivtHd~-------------------~~~~~~~d~i~~l~~G~ 248 (266)
+++.| ++++.|||+|+|.. ..+..++|.++.|+.++
T Consensus 306 il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 306 FMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 44443 34578999999982 22466799999998653
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.49 E-value=3.9e-15 Score=121.32 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=69.8
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 155 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (266)
+|.+++|+.++|+||||||||||+++|++.+.|.+|... .|+ +..... ..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~------------~~~~~~---------~~~~ 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFF------------DTKDLI---------FRLK 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEE------------EHHHHH---------HHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEE------------EHHHHH---------HHHH
Confidence 466778999999999999999999999998876666311 010 000000 0011
Q ss_pred HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 024529 156 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVL---FQGGILMVSHDE 231 (266)
Q Consensus 156 ~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~---~~~tiiivtHd~ 231 (266)
.....-. .. -+...+.+|++|+||||++ ++|+.....+.+.+.. .+.++|++||..
T Consensus 84 ~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 84 HLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111000 00 0112234999999999995 8999988877776643 467899999976
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=5.1e-14 Score=126.18 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=72.1
Q ss_pred EEEEECCCCchHHHHHHHHhC-CCCCCceEEEEcCe---------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529 84 RIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 153 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (266)
.+.|.||||+|||||+++|++ ++.|+.|.+.+++. ..++++++.....+.... . .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD--M-------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh--c-------CCcchHH
Confidence 389999999999999999999 88999998876542 224444443321111100 0 0011112
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCH
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDE 231 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~ 231 (266)
+++.++.+.-.... .... .||| +..+|+++|+|||++ ||+.+...+.+.+.+. +.++|++||+.
T Consensus 109 ~~~~i~~~~~~~~~-~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 109 IQELLKEVAQMEQV-DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHhccc-cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 33333332211111 1111 5676 778999999999999 9999999999999875 34799999986
Q ss_pred HH
Q 024529 232 HL 233 (266)
Q Consensus 232 ~~ 233 (266)
+.
T Consensus 175 ~~ 176 (354)
T 1sxj_E 175 SP 176 (354)
T ss_dssp CS
T ss_pred HH
Confidence 53
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.46 E-value=2.5e-14 Score=113.80 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=62.9
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
+++++ +|+.++|+||||||||||+++|++...+ +|. .+.|+..... ...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~~~-----~~~------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAASM-----PLT------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETTTS-----CCC-------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHHHh-----hHH-------------
Confidence 45555 8999999999999999999999998876 451 1223322111 000
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCE-EEE
Q 024529 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGG-ILM 226 (266)
Q Consensus 151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~t-iii 226 (266)
+++.+|++|++|||++ +|....+.+++.+. +.+.+ +|+
T Consensus 79 -------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iii 120 (149)
T 2kjq_A 79 -------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLL 120 (149)
T ss_dssp -------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred -------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEE
Confidence 2356899999999998 55554666666554 34567 888
Q ss_pred EecC
Q 024529 227 VSHD 230 (266)
Q Consensus 227 vtHd 230 (266)
+||.
T Consensus 121 ts~~ 124 (149)
T 2kjq_A 121 GSEY 124 (149)
T ss_dssp EESS
T ss_pred ECCC
Confidence 8884
No 133
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.45 E-value=3.7e-17 Score=150.74 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=86.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------------- 119 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------------- 119 (266)
.++++++++.| +...+|+++ +. .+|++++|+|||||||||||++|+|++.|++|.|...+..
T Consensus 143 ~~~l~~Lg~~~-~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTA-HNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCH-HHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCH-HHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 45667777666 334477887 53 8999999999999999999999999999999998754321
Q ss_pred eEEEEe---------ccccCCC--CCC--CcHHHHHHHh-C--------CCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 024529 120 RIAVFS---------QHHVDGL--DLS--SNPLLYMMRC-F--------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177 (266)
Q Consensus 120 ~i~~~~---------q~~~~~~--~~~--~~~~~~~~~~-~--------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 177 (266)
.+++.+ |++...+ .+. .+....+... . ...+...+...|..+++... ..+..|||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSg 296 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLG 296 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHH
Confidence 112222 4331100 001 1122222111 0 01112234445777888643 25678999
Q ss_pred HHHHHHHHHHHHccCCCEEE
Q 024529 178 GQKSRVAFAKITFKKPHIIL 197 (266)
Q Consensus 178 GqkqRv~lAral~~~p~lll 197 (266)
||+|| |||+|+.+|+++.
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 9999999999876
No 134
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.45 E-value=2.8e-14 Score=128.70 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=74.5
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEc-C-------eeeEEEEeccccCCCCCCCcHHHH
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRS-A-------KVRIAVFSQHHVDGLDLSSNPLLY 141 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~-~-------~~~i~~~~q~~~~~~~~~~~~~~~ 141 (266)
-++++++.+ +|++++|+||||||||||+|+|+|+.. |++|+|... + ...+++++|.... ..+.+...+
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l--~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDV--IDSPGVREF 281 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEE--EECHHHHTC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEe--cCcccHHHh
Confidence 357777754 799999999999999999999999999 999999764 3 2357888876421 111111110
Q ss_pred HHHhCCCCcH----HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529 142 MMRCFPGVPE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189 (266)
Q Consensus 142 ~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral 189 (266)
....... ..+.++++.+++.. ..+.++.+|| ||+||++||+++
T Consensus 282 ---~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ---GLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp ---CCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTS
T ss_pred ---hhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcC
Confidence 1112222 23456778888874 4677889999 999999999875
No 135
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.44 E-value=2e-16 Score=149.32 Aligned_cols=159 Identities=13% Similarity=0.105 Sum_probs=96.5
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEEEEeccccCC--C-------
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHHVDG--L------- 132 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~~~~q~~~~~--~------- 132 (266)
.+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|.+.+.. .+.+..+..... .
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46789999999999999999999999999999999999999999876532 233443321100 0
Q ss_pred -------------CCCCcHH-HHHHHhCCCC------cHHHHHHHHHhc-----CCCcccc---c---CCCCCCChHHHH
Q 024529 133 -------------DLSSNPL-LYMMRCFPGV------PEQKLRAHLGSF-----GVTGNLA---L---QPMYTLSGGQKS 181 (266)
Q Consensus 133 -------------~~~~~~~-~~~~~~~~~~------~~~~~~~~l~~~-----~l~~~~~---~---~~~~~LSgGqkq 181 (266)
.+..... ..+.....+. ....+.++++++ ++...+. + .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 0111111 1111100000 001122223322 2221111 1 123468999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEE--EecCHHHHHhhcCE
Q 024529 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILM--VSHDEHLISGSVEE 240 (266)
Q Consensus 182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiii--vtHd~~~~~~~~d~ 240 (266)
|.++|. + | |+|||+.+...+++.+.++ +.|+++ +||+++.+...|+.
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 877641 1 7 9999997765555555433 457775 89999999888763
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.43 E-value=5.8e-16 Score=126.13 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=61.8
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCee---------------eEE----EEeccccCCCCCCCcHHH
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV---------------RIA----VFSQHHVDGLDLSSNPLL 140 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~---------------~i~----~~~q~~~~~~~~~~~~~~ 140 (266)
++++|+|+||||||||+++|+|+++|+ .|.|..++.. .++ +++|+.... +.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~----- 75 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR----- 75 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee-----
Confidence 589999999999999999999999998 8999866532 122 333322110 00
Q ss_pred HHHHhCCCCcHH--HHHHHHHh-c-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529 141 YMMRCFPGVPEQ--KLRAHLGS-F-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196 (266)
Q Consensus 141 ~~~~~~~~~~~~--~~~~~l~~-~-~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 196 (266)
....+. .+.+++.. + +++.. -...|||||+||++||||++.+|++.
T Consensus 76 ------~~~~~~~a~l~~~i~~~l~g~dt~----i~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 76 ------RVSEEEGNDLDWIYERYLSDYDLV----ITEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ------ECCHHHHTCHHHHHHHHTTTCSEE----EEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ------cCChhhhhCHHHHHHhhCCCCCEE----EECCcCCCCCcEEEEEecccCCCccC
Confidence 000111 23444444 3 33322 22349999999999999999999873
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.42 E-value=4.6e-15 Score=130.62 Aligned_cols=121 Identities=17% Similarity=0.048 Sum_probs=77.5
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHh-----------CC-
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC-----------FP- 147 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~-----------~~- 147 (266)
.++.+++|+|++|||||||.+.|++++.+. |. ....+.+++|+.+. ........+... .+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f~---~~~~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDFY---LTHEDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGGB---CCHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEecccccc---CChHHHHHHhccccccchhhhccCcc
Confidence 467899999999999999999999998763 20 01223444777542 122223332111 11
Q ss_pred CCcHHHHHHHHHhcCCC------c-ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 024529 148 GVPEQKLRAHLGSFGVT------G-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 208 (266)
Q Consensus 148 ~~~~~~~~~~l~~~~l~------~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~ 208 (266)
..+...+.+.++.+.-. . .........+||||+||+++|++...+|+|||+||||+++|+.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 12345566666665332 1 1112334689999999999984333399999999999999985
No 138
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.41 E-value=6e-16 Score=129.42 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=80.8
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHH----HhCC-CCcHHH
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMM----RCFP-GVPEQK 153 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~----~~~~-~~~~~~ 153 (266)
.++|++++|+||||||||||+++|+|+++|+ | ..+++++++.. .+......... ...+ ......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGF---HLDNRLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGG---BCCHHHHGGGTCGGGTTSGGGBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCC---cCCHHHHHHhcccccCCCCchhhHHH
Confidence 4789999999999999999999999999864 2 12334444322 11111110000 0000 112222
Q ss_pred HHHHHHhcCCCc----ccccCCCCCCChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEe
Q 024529 154 LRAHLGSFGVTG----NLALQPMYTLSGGQKSRVAFA-KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVS 228 (266)
Q Consensus 154 ~~~~l~~~~l~~----~~~~~~~~~LSgGqkqRv~lA-ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivt 228 (266)
+.+.+..+...+ ...+ ....+|+||+||+++| ++++.++.++++|||.. ..+...-..+|+++
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLE 155 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEEC
T ss_pred HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEe
Confidence 333333321111 1112 2346799999999998 88888888888888841 11233335788888
Q ss_pred cCHHH-HHhhcCE
Q 024529 229 HDEHL-ISGSVEE 240 (266)
Q Consensus 229 Hd~~~-~~~~~d~ 240 (266)
++.+. +.+.+.|
T Consensus 156 ~~~~~~~~R~~~R 168 (208)
T 3c8u_A 156 VPMADLEARLVQR 168 (208)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 88876 4555554
No 139
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.40 E-value=1.4e-16 Score=142.06 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=39.7
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhh
Q 024529 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGS 237 (266)
Q Consensus 174 ~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~ 237 (266)
+||+||+||+..+++++.+|+++ ||| ......+..+. .+.+|+++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA------EKLHERLARIN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT------HHHHHHHHHHC-SSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH------HHHHHHHHHhC-CCCeEEEecccCCCHHHH
Confidence 79999999999999999999987 999 23333333332 256899999965444433
No 140
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.39 E-value=2.3e-14 Score=128.22 Aligned_cols=167 Identities=13% Similarity=0.041 Sum_probs=93.3
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------------eEEEEeccccCCCCCCCcHHH
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------------RIAVFSQHHVDGLDLSSNPLL 140 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------------~i~~~~q~~~~~~~~~~~~~~ 140 (266)
..++|++++|+||||||||||+++|+|+++|++|+|.+.+.. .+.+++|... .+...+...
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e 202 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYD 202 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHH
Confidence 347899999999999999999999999999999999865421 1224444321 110001111
Q ss_pred HHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh-
Q 024529 141 YMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV- 218 (266)
Q Consensus 141 ~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~- 218 (266)
.+.... ...+ .-+++..|... .. ..=..+.-.+++++..++.+++||.+|. .|.. .....+.
T Consensus 203 ~l~~~~~~~~d----~vliDtaG~~~-~~-------~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~---~~~~~~~~ 266 (328)
T 3e70_C 203 AIQHAKARGID----VVLIDTAGRSE-TN-------RNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV---EQARQFNE 266 (328)
T ss_dssp HHHHHHHHTCS----EEEEEECCSCC-TT-------TCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH---HHHHHHHH
T ss_pred HHHHHHhccch----hhHHhhccchh-HH-------HHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH---HHHHHHHH
Confidence 110000 0000 00011112211 01 1112333358999999999999996664 3332 2233343
Q ss_pred hcCCEEEEEecCH---------HHHHhhcCEEEEEeCCeEEe--cCCChhHHHHH
Q 024529 219 LFQGGILMVSHDE---------HLISGSVEELWVVSEGKATP--FHGTFHDYKKM 262 (266)
Q Consensus 219 ~~~~tiiivtHd~---------~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~ 262 (266)
..+.++|++||.- ..+....-.|..+..|+.+. ..-+++.+.+.
T Consensus 267 ~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~ 321 (328)
T 3e70_C 267 AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLER 321 (328)
T ss_dssp HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHH
T ss_pred hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHH
Confidence 4577999999943 23334456788888887421 12455665544
No 141
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.38 E-value=2.2e-14 Score=133.91 Aligned_cols=163 Identities=18% Similarity=0.109 Sum_probs=93.1
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------eeEEEEeccccCCCCC
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL 134 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~ 134 (266)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++|... ...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCH
Confidence 46899999999999999999999999999999999999999987431 12456665431 111
Q ss_pred CCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc-cCC-CEEEEeCCCCCCCHHHHH
Q 024529 135 SSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-KKP-HIILLDEPSNHLDLDAVE 211 (266)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~-~~p-~lllLDEPt~~LD~~~~~ 211 (266)
..+....+.... .+.+ .-+++..|..... ..|-.-.+|++.+++++. ..| .+||...||.|.|...
T Consensus 361 ~~tV~e~l~~a~~~~~D----vVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~-- 429 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID----VLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-- 429 (503)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--
T ss_pred HHHHHHHHHHHHhcCCC----EEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--
Confidence 111111111000 0000 0001112221100 011112347788888764 446 4666666998866542
Q ss_pred HHHHHHh-hcCCEEEEEecCHH---------HHHhhcCEEEEEeCCe
Q 024529 212 ALIQGLV-LFQGGILMVSHDEH---------LISGSVEELWVVSEGK 248 (266)
Q Consensus 212 ~l~~~l~-~~~~tiiivtHd~~---------~~~~~~d~i~~l~~G~ 248 (266)
..+.+. ..+.+.|++||--. .+..+.-.|..+..|.
T Consensus 430 -~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 430 -QAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp -HHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred -HHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCC
Confidence 233343 35678999999222 2333345677777765
No 142
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.37 E-value=8.8e-13 Score=116.26 Aligned_cols=131 Identities=18% Similarity=0.086 Sum_probs=90.3
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 135 (266)
+.++++++.|++ .. ++++|+ +|++++|+|+||+||||++..|++++.+..|+|.+.+ . +..
T Consensus 77 ~~~~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~--------~------d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA--------A------DTQ 137 (295)
T ss_dssp HHHHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE--------C------CSS
T ss_pred HHHHHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec--------C------Ccc
Confidence 456788888843 22 788888 8999999999999999999999999988888876421 1 111
Q ss_pred CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHH
Q 024529 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDAVEALI 214 (266)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP-t~~LD~~~~~~l~ 214 (266)
...... ....+.+..++.- .... ...+..+.+|.+|+++...+++++|+||| +.++|.....++.
T Consensus 138 ~~~~~~-----------ql~~~~~~~~l~~-~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~ 203 (295)
T 1ls1_A 138 RPAARE-----------QLRLLGEKVGVPV-LEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203 (295)
T ss_dssp CHHHHH-----------HHHHHHHHHTCCE-EECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred cHhHHH-----------HHHHhcccCCeEE-EEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHH
Confidence 111110 1112234445542 1100 12344566789999998899999999999 9999998777766
Q ss_pred HHHhh
Q 024529 215 QGLVL 219 (266)
Q Consensus 215 ~~l~~ 219 (266)
.....
T Consensus 204 ~~~~~ 208 (295)
T 1ls1_A 204 RLKEV 208 (295)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65543
No 143
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.34 E-value=1.3e-15 Score=126.63 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=76.8
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCC-------------CCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHH--
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ-------------PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-- 144 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-------------p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~-- 144 (266)
++|++++|+||||||||||+++|+|+++ |..|++ ++. .|.++. ...+.....
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g~---~~~~~~--------~~~~~~~i~~~ 68 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGK---DYYFVT--------REMMQRDIAAG 68 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTT---TBEECC--------HHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CCc---eEEEcc--------HHHHHHHHHcC
Confidence 5799999999999999999999999875 444432 111 011110 000100000
Q ss_pred ----------hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH---HHHH-HHccCCCEEEEeCCCCCCCHHHH
Q 024529 145 ----------CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV---AFAK-ITFKKPHIILLDEPSNHLDLDAV 210 (266)
Q Consensus 145 ----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv---~lAr-al~~~p~lllLDEPt~~LD~~~~ 210 (266)
...+.+.+.+.++++.-... ..+. .+ .|-++.. ..++ +++.+|++++|||||+++|..+.
T Consensus 69 ~~l~~~~~~~n~~g~~~~~i~~~~~~~~~~--~~~~---~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e 142 (198)
T 1lvg_A 69 DFIEHAEFSGNLYGTSKEAVRAVQAMNRIC--VLDV---DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETE 142 (198)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEC---CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCH
T ss_pred CCEeeeeecCccCCCCHHHHHHHHHcCCcE--EEEC---CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCH
Confidence 00122455666666532111 0000 00 1111111 1455 68888999999999999998887
Q ss_pred HHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529 211 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE 246 (266)
Q Consensus 211 ~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~ 246 (266)
+.+.+.|...... +.++|. . ..+|+|+++++
T Consensus 143 ~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 143 ESLAKRLAAARTD-MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECSS
T ss_pred HHHHHHHHHHHHH-HHHhhc--c--CCceEEEECCC
Confidence 7777766543111 233552 1 46888877653
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=7.1e-15 Score=134.27 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=100.4
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhC------------CCCCCceEEEEcCe------------ee---EEEEeccccC
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAG------------ELQPSSGTVFRSAK------------VR---IAVFSQHHVD 130 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~~~------------~~---i~~~~q~~~~ 130 (266)
.++.|..++|+|+||+|||||+++|+| ...|+.|.+.+.+. .. ..++.+.+-.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346899999999999999999999999 56799999987651 11 1234443311
Q ss_pred CCCCC--CcHH-HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCC
Q 024529 131 GLDLS--SNPL-LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHL 205 (266)
Q Consensus 131 ~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~L 205 (266)
....+ .... .++... ... ..++..+... .+..+..+||+. +| +++++|||+.++
T Consensus 96 ~~~~s~~e~L~~~fl~~i-r~~-----d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~ildeel~~~ 154 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHV-RAV-----DAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSIIVDELLIK 154 (392)
T ss_dssp CCCCCSSSSSCHHHHHHH-TTC-----SEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHH-HHH-----HHHHHHHhcc---ccceeeeecccc------------CcchhhhhchhhhHHH
Confidence 11111 0000 111100 000 0011112221 134455577753 89 999999999999
Q ss_pred CHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEE-EEeCC-eEEecCCChh
Q 024529 206 DLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELW-VVSEG-KATPFHGTFH 257 (266)
Q Consensus 206 D~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~-~l~~G-~i~~~~g~~~ 257 (266)
|+......++.+... +.|++ +|+...+..+|+++. +|++| +++ +.|+.+
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~~ 209 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPI-RKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCG-GGSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCcee-ecCCCC
Confidence 999988887777654 33543 999999999999999 89999 775 446543
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.33 E-value=1.8e-12 Score=114.86 Aligned_cols=99 Identities=21% Similarity=0.240 Sum_probs=73.7
Q ss_pred eceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 153 (266)
Q Consensus 74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (266)
.+++...+|++++|+|||||||||+++.|++.+.+..|+|.+.+ .+. ..... .+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~--------~D~------~r~~a-----------~eq 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA--------ADT------FRAAA-----------IEQ 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--------ECT------TCHHH-----------HHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc--------ccc------ccHHH-----------HHH
Confidence 45666788999999999999999999999999988888775321 111 11000 122
Q ss_pred HHHHHHhcCCCcccccCCCCCCChHHHHHH---HHHHHHccCCCEEEEeCCCC
Q 024529 154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRV---AFAKITFKKPHIILLDEPSN 203 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv---~lAral~~~p~lllLDEPt~ 203 (266)
+..+++.+++.. +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 151 L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 LKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 344556667642 235789999999 99999999999999999975
No 146
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.32 E-value=9e-14 Score=122.98 Aligned_cols=109 Identities=10% Similarity=0.074 Sum_probs=74.1
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE---cCe----------e-eEEEEeccccCC-C----CCC-Cc
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK----------V-RIAVFSQHHVDG-L----DLS-SN 137 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~---~~~----------~-~i~~~~q~~~~~-~----~~~-~~ 137 (266)
++..|++++|+||||||||||+|+|+ +.+|++|+|.. .|+ . .++|++|.+... + .++ .+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~ 239 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE 239 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHH
Confidence 34579999999999999999999999 99999999987 442 1 368999886211 1 111 11
Q ss_pred HHHHHH-------Hh----CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529 138 PLLYMM-------RC----FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187 (266)
Q Consensus 138 ~~~~~~-------~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr 187 (266)
....+. .. ........+.++++.+++.+...++++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 100110 01 112234578899999999754556788899998899999986
No 147
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.31 E-value=4.1e-12 Score=112.00 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=84.6
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (266)
.+|++++|+|||||||||+++.|++.+.+++|. ++.++.++.. ..... +.+..+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~-----r~~a~------------eqL~~~~~ 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTY-----RIAAV------------EQLKTYAE 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCS-----STTHH------------HHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcc-----cchHH------------HHHHHHHH
Confidence 479999999999999999999999999887782 3445555432 11111 12222334
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---HHhhc-C-CEEEEE--ecCHH
Q 024529 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ---GLVLF-Q-GGILMV--SHDEH 232 (266)
Q Consensus 160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~---~l~~~-~-~tiiiv--tHd~~ 232 (266)
.+++.... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.+ .+... . .+++++ ||+..
T Consensus 159 ~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~ 227 (296)
T 2px0_A 159 LLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE 227 (296)
T ss_dssp TTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred hcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence 44543211 122 3334566664 4899999999 89999865443332 22211 1 234444 99998
Q ss_pred HHHhhcCEEEEEeCCeEE
Q 024529 233 LISGSVEELWVVSEGKAT 250 (266)
Q Consensus 233 ~~~~~~d~i~~l~~G~i~ 250 (266)
.+..+++++..+..+.++
T Consensus 228 ~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 228 DMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 888888876555555553
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.29 E-value=9e-13 Score=123.14 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCCCChHHHHHHHHHH--HHcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 024529 172 MYTLSGGQKSRVAFAK--ITFK---------------KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 234 (266)
Q Consensus 172 ~~~LSgGqkqRv~lAr--al~~---------------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~ 234 (266)
.+.+||||+|-.-+|. +++. .-.+++|||. +-+|.+.....++.+++++--+|++|=+ .+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~i 453 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--NI 453 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--SC
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--hh
Confidence 4579999999644443 3322 2357999999 9999999999999999999999999988 56
Q ss_pred HhhcCEEEEEe
Q 024529 235 SGSVEELWVVS 245 (266)
Q Consensus 235 ~~~~d~i~~l~ 245 (266)
..++|.++.+-
T Consensus 454 ~p~v~~~~~~~ 464 (483)
T 3euj_A 454 SPERGTTYKLV 464 (483)
T ss_dssp CCSSSEEEECC
T ss_pred hhccCceEEEE
Confidence 66788887663
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.27 E-value=5.7e-11 Score=100.52 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=40.7
Q ss_pred cCCCEEEEeCCCCCC--CHHHHH----HHHHHHhhcCCEEEEEecCHHH--------HHhhcCEEEEEeC
Q 024529 191 KKPHIILLDEPSNHL--DLDAVE----ALIQGLVLFQGGILMVSHDEHL--------ISGSVEELWVVSE 246 (266)
Q Consensus 191 ~~p~lllLDEPt~~L--D~~~~~----~l~~~l~~~~~tiiivtHd~~~--------~~~~~d~i~~l~~ 246 (266)
.+|+++++|+|++.+ |+.... .+.+.+++.+.+||+++|.... +..+||.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 553222 3344445667899999998765 4578999999863
No 150
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=2.1e-15 Score=135.18 Aligned_cols=161 Identities=20% Similarity=0.268 Sum_probs=95.9
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCC-------cEEEEECCCCchHHHHHHHHhCCC----CCCceEEEEcC------
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLD-------SRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSA------ 117 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~~------ 117 (266)
+++.++++..|+ ...+++++++.+.+| +.++|+||||+|||||+++|+|.+ .+++|.+...+
T Consensus 18 ~lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 18 FLRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TTSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred HcCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 355567777774 456889999999877 899999999999999999999987 66677664321
Q ss_pred -----eeeEEEEeccccCCCCCCCcHHHHHH---HhCC-------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529 118 -----KVRIAVFSQHHVDGLDLSSNPLLYMM---RCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 182 (266)
Q Consensus 118 -----~~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR 182 (266)
...+.+++|... +.. +..+.+. .... ......+...+..+++.. ...++..||+|++||
T Consensus 97 ~~~~~~~~v~~iDE~~~--l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHR--LNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR 170 (334)
T ss_dssp HHHCCTTCEEEEETGGG--CCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred HHHccCCCEEEEcchhh--cCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence 234778877542 111 1222111 1110 111233444555566643 345668999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcC
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d 239 (266)
+.++ .+||+.+..++.+.+++... ..-++|+.+.+..+|+
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAK 210 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHH
T ss_pred cCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Confidence 8654 55666555555554433210 0013677777666654
No 151
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.20 E-value=3.3e-15 Score=130.44 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=82.0
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEEEeccccCCCCCCCc
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAVFSQHHVDGLDLSSN 137 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~~~q~~~~~~~~~~~ 137 (266)
..+++++++++++| ++|+||||||||||+++|+|...+ |.|.+.+.. .+++++|..... .....
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~-~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNS-APCVI 107 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT-CSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc-CCCeE
Confidence 45789999999999 999999999999999999998876 566654321 011122110000 00000
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC------------CC
Q 024529 138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN------------HL 205 (266)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~------------~L 205 (266)
.++++-.. ....... ..+......++.+..|||||+||+.|++|+..+|++| |||+. --
T Consensus 108 ~~Deid~~---~~~r~~~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 108 FFDEVDAL---CPRRSDR----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp EEETCTTT---CC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred eeehhhhh---hcccCCC----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence 00000000 0000000 0000112233456789999999999999999999985 99864 34
Q ss_pred CHHHHHHHHHHHhh
Q 024529 206 DLDAVEALIQGLVL 219 (266)
Q Consensus 206 D~~~~~~l~~~l~~ 219 (266)
|...+..+++.+.+
T Consensus 179 ~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 179 PPADRLAILKTITK 192 (274)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 67788888887653
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.16 E-value=2.7e-11 Score=112.81 Aligned_cols=164 Identities=14% Similarity=0.150 Sum_probs=100.5
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHH-----
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR----- 144 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~----- 144 (266)
..|+++..-+.+|+++.|.|++|+|||||+..|++...+..|. .+.|+.-+. .. ......+..
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E~----s~-~~l~~r~~~~~~~~ 258 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLEM----SA-QQLVMRMLCAEGNI 258 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESSS----CH-HHHHHHHHHHHHTC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECCC----CH-HHHHHHHHHHHcCC
Confidence 4678888889999999999999999999999999876554341 122332211 00 001111100
Q ss_pred -----hCCCCcH---HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH-------
Q 024529 145 -----CFPGVPE---QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLDL------- 207 (266)
Q Consensus 145 -----~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~--~~p~lllLDEPt~~LD~------- 207 (266)
....... .++.+.++.++...... .....+|.++.+ +.++.+. .+|+++++|+++...+.
T Consensus 259 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~ 335 (454)
T 2r6a_A 259 NAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENR 335 (454)
T ss_dssp CHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----C
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCH
Confidence 0011222 22334444443322222 223579999987 4556665 68999999999988742
Q ss_pred -HHHHHHHHHHh----hcCCEEEEEec---------C--HH--------HHHhhcCEEEEEeCCe
Q 024529 208 -DAVEALIQGLV----LFQGGILMVSH---------D--EH--------LISGSVEELWVVSEGK 248 (266)
Q Consensus 208 -~~~~~l~~~l~----~~~~tiiivtH---------d--~~--------~~~~~~d~i~~l~~G~ 248 (266)
.....+.+.|+ +.+.+||+++| + +. .+...||.|++|..++
T Consensus 336 ~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 336 QQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 23344544444 45789999999 3 22 4677899999998654
No 153
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.16 E-value=4.1e-13 Score=119.00 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=54.1
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEE-------------------eCCcEEEEECCCCchHHHHHHHHhCCCC--CCceE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGI-------------------DLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGT 112 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i-------------------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~ 112 (266)
.+|++++|++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 3689999999993 5889999988 9999999999999999999999999988 99999
Q ss_pred EEE
Q 024529 113 VFR 115 (266)
Q Consensus 113 i~~ 115 (266)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 154
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=1.5e-12 Score=115.02 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=59.7
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE---cCe-----------eeEEEEeccccC-CCCC-------
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK-----------VRIAVFSQHHVD-GLDL------- 134 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~---~~~-----------~~i~~~~q~~~~-~~~~------- 134 (266)
|++..|++++|+||||||||||+|+|+|+.+|++|+|.. .|+ ..+++++|.+.. .+.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 445679999999999999999999999999999999987 432 136888887621 1110
Q ss_pred ------CCcHHHHHH--Hh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 024529 135 ------SSNPLLYMM--RC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177 (266)
Q Consensus 135 ------~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 177 (266)
..+. .+.. .. .......++.++|+.++|.....++++..||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 0000 0000 00 01223456889999999964445566677774
No 155
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.09 E-value=2e-11 Score=103.29 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=71.2
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHh-CCCC------------CCceEEEEcCeeeEEEEeccccCCCCCCC
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GELQ------------PSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~------------p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 136 (266)
...+++||++++|++++|+||||||||||+++|+ |+++ |..|++. + +.|.++..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~--g---~~~~~~~~-------- 81 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKE--G---KDYYFVDR-------- 81 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCB--T---TTBEECCH--------
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccC--C---CeEEEecH--------
Confidence 3568999999999999999999999999999999 9984 3333320 0 11222211
Q ss_pred cHHHHHHHh---------C---CCCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHH-HHH-HHHccCCCEEEEeC
Q 024529 137 NPLLYMMRC---------F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRV-AFA-KITFKKPHIILLDE 200 (266)
Q Consensus 137 ~~~~~~~~~---------~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--GqkqRv-~lA-ral~~~p~lllLDE 200 (266)
..+..+... . .......+.+.++.-.. ...+- .+.| .-++++ .-+ .+++..|+..+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 82 EEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVI---DWQGAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp HHHHHHHHTTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEEC---CHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred HHhhhhhhcCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEc---CHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 001111000 0 00112223444433111 11110 0111 112322 111 23456777888899
Q ss_pred CCCCCCHHHHHHHHHHHhh-------c-CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529 201 PSNHLDLDAVEALIQGLVL-------F-QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~-------~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 262 (266)
++...|..+.+.+.+.+.. . ...+++++|+++.+..-+.+++....++.. ...+.++|.+.
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~ 225 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC-RQVGLRELLES 225 (231)
T ss_dssp C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG-GEESHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc-cCcchhhHhhc
Confidence 9999887665555443321 1 236888899988876666655544444442 34555555543
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.05 E-value=1e-09 Score=98.77 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=81.1
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 157 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
-+++|+++.|.||+|||||||+..++.......|.+ .|+.-+. .. ... .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v--------lyi~~E~----~~--~~~-----------------~ 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA--------AFIDAEH----AL--DPE-----------------Y 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESSC----CC--CHH-----------------H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--------EEEECCC----Cc--CHH-----------------H
Confidence 578999999999999999999888875443333333 2332221 11 111 0
Q ss_pred HHhcCCCcccccCCC-CCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH--HHHHHH---
Q 024529 158 LGSFGVTGNLALQPM-YTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHL----------DL----DA--VEALIQ--- 215 (266)
Q Consensus 158 l~~~~l~~~~~~~~~-~~LSgGqkqRv~lAral~~~--p~lllLDEPt~~L----------D~----~~--~~~l~~--- 215 (266)
.+.+|+... +..+ ...+. .+-+.++++++.. |+++++|||++.+ |+ .. ....+.
T Consensus 106 a~~lG~~~~--~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~ 181 (349)
T 2zr9_A 106 AKKLGVDTD--SLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMT 181 (349)
T ss_dssp HHHTTCCGG--GCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHH--HeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHH
Confidence 122333211 0000 11233 3345678877654 9999999999998 32 11 122222
Q ss_pred -HHhhcCCEEEEEecCHH----------------HHHhhcCEEEEEeCCeE
Q 024529 216 -GLVLFQGGILMVSHDEH----------------LISGSVEELWVVSEGKA 249 (266)
Q Consensus 216 -~l~~~~~tiiivtHd~~----------------~~~~~~d~i~~l~~G~i 249 (266)
.+++.+.+||+++|-.. .+..+||.++.+..++.
T Consensus 182 ~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 182 GALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp HHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred HHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 23566889999999653 25668999988877654
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.05 E-value=1.5e-10 Score=94.80 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
+.+.+|++|+.+|+++++| ||++|..+..++++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 999999999999887754
No 158
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=9.8e-12 Score=110.01 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=57.3
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE---cCe--------ee--EEEEeccccCC-CCC-CCcHHHH
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK--------VR--IAVFSQHHVDG-LDL-SSNPLLY 141 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~---~~~--------~~--i~~~~q~~~~~-~~~-~~~~~~~ 141 (266)
+++.+|++++|+||||||||||+|+|+|+.+|..|+|.. .|+ .. ++|++|.+... +.+ ..+. +.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 556789999999999999999999999999999999986 332 11 58899886321 111 1222 22
Q ss_pred HH-------Hh----------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 024529 142 MM-------RC----------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 181 (266)
Q Consensus 142 ~~-------~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 181 (266)
+. .. ........+.++++.+++..... .....|+.|++|
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~-~~y~~lls~~~~ 302 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRY-DHYVEFMTEIKD 302 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHH-HHHHHHHHHHhh
Confidence 21 00 11123456888999999974332 334567777776
No 159
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.00 E-value=2.2e-11 Score=104.74 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=35.8
Q ss_pred CCcEEEEee-EEEcCCCCcceeeceEEEeC---CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 53 PPIISFSDA-SFGYPGGPILFKNLNFGIDL---DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 53 ~~~l~~~~l-~~~y~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+++|+ ++.|+++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 357999999 99994456799999999999 9999999999999999999999854
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.98 E-value=7.6e-11 Score=113.50 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=95.8
Q ss_pred EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc-eEEEEcCe------eeEEEEeccccCC
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAK------VRIAVFSQHHVDG 131 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~~------~~i~~~~q~~~~~ 131 (266)
++++.-| +...+++++++.+.+|+.++|+||||||||||+++|+++.++.. |.+.+.+. ..+.++++.....
T Consensus 38 ~~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 38 KLIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp SHHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred cccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 3444446 45568899999999999999999999999999999999998887 66654332 2355554432000
Q ss_pred C------------CCCCcHHHHHH-H--------hCC--C-----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529 132 L------------DLSSNPLLYMM-R--------CFP--G-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183 (266)
Q Consensus 132 ~------------~~~~~~~~~~~-~--------~~~--~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv 183 (266)
+ ......+.... . ... . ........+ +|..+. .....+.+|+|++|++
T Consensus 117 ~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L---~G~~~~-~~~~~g~~~~g~~~~i 192 (604)
T 3k1j_A 117 IVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGAL---LGDVRH-DPFQSGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHH---HCEECC-CCC----CCCCGGGGE
T ss_pred HHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhc---CceEEe-chhhcCCccccccccc
Confidence 0 00000000000 0 000 0 000011122 221111 1122357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
..++....++.+|+|||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899999999888863
No 161
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.98 E-value=6.8e-12 Score=106.45 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=42.5
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~ 117 (266)
.|+++|+...|+ . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+++
T Consensus 9 ~l~l~~~~~~~~-~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA-R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE-E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC-C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 488888876552 1 566666 89999999999999999999999999999887644
No 162
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.96 E-value=5.6e-12 Score=118.54 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=93.6
Q ss_pred eceEEEeCCcEEEEECCCCchHHHHHHHHhC--CCCCCceEEEE---cCeeeEEEEeccc--cCCC--CCCCcHHH--HH
Q 024529 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFR---SAKVRIAVFSQHH--VDGL--DLSSNPLL--YM 142 (266)
Q Consensus 74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~---~~~~~i~~~~q~~--~~~~--~~~~~~~~--~~ 142 (266)
.+++++.++..+.|.|++||||||++++|.. ++.++.|++.+ +.+. .. ++.. ...+ .+..+... ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~e--l~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LE--LSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SG--GGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hh--hhhhccCCcccceeecCHHHHHHH
Confidence 5688889999999999999999999999876 55555565542 1110 00 0100 0011 11111111 01
Q ss_pred HHhCCCCcHHHHHHHHHhcCCCccccc---CCCCCCChHHHHHH----------HHHHHHccCCC-EEEEeCCCCCCCHH
Q 024529 143 MRCFPGVPEQKLRAHLGSFGVTGNLAL---QPMYTLSGGQKSRV----------AFAKITFKKPH-IILLDEPSNHLDLD 208 (266)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~LSgGqkqRv----------~lAral~~~p~-lllLDEPt~~LD~~ 208 (266)
.......-+++ .+.+...|+.+ +.. +....+|+||+|+. ++|+++...|. ++++||+++.+|..
T Consensus 236 L~~~~~EmerR-~~ll~~~Gv~~-i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~ 313 (512)
T 2ius_A 236 LRWCVNEMERR-YKLMSALGVRN-LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV 313 (512)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCSS-HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHcCCcc-HHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh
Confidence 11000111222 35677777753 211 11235788887752 35666778888 89999999888743
Q ss_pred H--HHHHHHHHhh----cCCEEEEEecCHH-------HHHhhcCEEEE
Q 024529 209 A--VEALIQGLVL----FQGGILMVSHDEH-------LISGSVEELWV 243 (266)
Q Consensus 209 ~--~~~l~~~l~~----~~~tiiivtHd~~-------~~~~~~d~i~~ 243 (266)
. ...++..|.+ .+.++|++||+.. ...++.+||.+
T Consensus 314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 314 GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 2 2334444433 3558999999987 45556666654
No 163
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.91 E-value=4e-10 Score=92.88 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=26.8
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999964
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.90 E-value=2.7e-12 Score=116.75 Aligned_cols=127 Identities=14% Similarity=0.150 Sum_probs=78.3
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE-cC---e--eeEEEEecccc---CCCCCCCcHHH
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR-SA---K--VRIAVFSQHHV---DGLDLSSNPLL 140 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~~---~--~~i~~~~q~~~---~~~~~~~~~~~ 140 (266)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+.. .. . ..+++++|... +........
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~-- 231 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE-- 231 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT--
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH--
Confidence 578999999999999999999999999999999985 4677654 21 0 12344444331 011100000
Q ss_pred HHHHhCCCCc----HHHHHHHHHh---------------cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE-EeC
Q 024529 141 YMMRCFPGVP----EQKLRAHLGS---------------FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL-LDE 200 (266)
Q Consensus 141 ~~~~~~~~~~----~~~~~~~l~~---------------~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll-LDE 200 (266)
.+...... ...+...++. .-+.....+.....+++|+++|+..+.+++..|++++ ||+
T Consensus 232 --~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~ 309 (377)
T 1svm_A 232 --SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER 309 (377)
T ss_dssp --TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred --HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence 00000000 1122333331 0111112234567899999999999888899999988 999
Q ss_pred CCC
Q 024529 201 PSN 203 (266)
Q Consensus 201 Pt~ 203 (266)
|+.
T Consensus 310 ~~~ 312 (377)
T 1svm_A 310 SEF 312 (377)
T ss_dssp CTH
T ss_pred CHH
Confidence 986
No 165
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.87 E-value=9.5e-10 Score=91.00 Aligned_cols=126 Identities=21% Similarity=0.164 Sum_probs=75.2
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 163 (266)
+++|+|+|||||||+.++|+++ |...++. + .+...........+.++.+.+|.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~---------d-------------~~~~~~~~~~~~~~~~i~~~~g~ 56 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA---------D-------------VVAREVVAKDSPLLSKIVEHFGA 56 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH---------H-------------HHHHHTTCSSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch---------H-------------HHHHHHccCChHHHHHHHHHhCH
Confidence 6899999999999999999983 3222110 0 00000000111234455666664
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHH--HhhcCE
Q 024529 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-QGGILMVSHDEHLI--SGSVEE 240 (266)
Q Consensus 164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivtHd~~~~--~~~~d~ 240 (266)
.. -.|.|+.+|..+++.+..+|+.+..+ ++.++|.....+.+.+... +.++|+.+|.+... ...||.
T Consensus 57 ~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~ 126 (206)
T 1jjv_A 57 QI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDR 126 (206)
T ss_dssp TC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSE
T ss_pred HH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCE
Confidence 21 13678999999999888887654333 3445666666666666543 45788888987654 567999
Q ss_pred EEEEeC
Q 024529 241 LWVVSE 246 (266)
Q Consensus 241 i~~l~~ 246 (266)
+++++-
T Consensus 127 vi~l~~ 132 (206)
T 1jjv_A 127 ILVVDV 132 (206)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998863
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.85 E-value=1.8e-09 Score=88.73 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=29.4
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 219 (266)
...|++++.+|+++++| ||++|..+..++++.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999988887776643
No 167
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.85 E-value=1.9e-09 Score=87.36 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=66.0
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE---------Ec--------CeeeEEEEeccccCCCCCC
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RS--------AKVRIAVFSQHHVDGLDLS 135 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---------~~--------~~~~i~~~~q~~~~~~~~~ 135 (266)
+++++++.+| +++|+||||||||||+++|.+++.+..|... .. ....+.+++|++...+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7889999998 9999999999999999999998877665321 11 2245777777653222211
Q ss_pred CcHHH---HHH----H----hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 024529 136 SNPLL---YMM----R----CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 184 (266)
Q Consensus 136 ~~~~~---~~~----~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~ 184 (266)
...+. .+. . ........++.+++..+++..+. ..-++.||.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~----~~~~~qg~~~~l~ 152 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG----YNIVLQGDITKFI 152 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC----TTEECTTCTTHHH
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC----CEEEEcccHHHHH
Confidence 00000 000 0 00012356788889988886432 1346666666654
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.83 E-value=4.7e-09 Score=94.55 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=76.2
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE-cCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR-SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (266)
..-.++|+|++|+|||||++.|+|.. +..|.... .....++.+.+... . ..+++
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~---~---------------------~~l~D 220 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYF---R---------------------YQIID 220 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTE---E---------------------EEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCc---e---------------------EEEEe
Confidence 34589999999999999999999865 22111100 00011222211100 0 00111
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhhc--CCEEEEEe--cCHH
Q 024529 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD-EPSNHLDLDAVEALIQGLVLF--QGGILMVS--HDEH 232 (266)
Q Consensus 160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD-EPt~~LD~~~~~~l~~~l~~~--~~tiiivt--Hd~~ 232 (266)
.-|+. +.+...+|+|++|++. +.+...++-++++| +|++++|......+++.+... +..+|+|. ||+.
T Consensus 221 t~G~~----~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 221 TPGLL----DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp CTTTS----SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred CCCcc----ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 12221 2456789999998876 55556777889999 999999999887777776652 45778887 8864
No 169
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.82 E-value=1.8e-09 Score=106.63 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=87.3
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 157 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
.+..|+.+.|+||+||||||++.++++...+..| .+ ..+.++.. ........ ...+
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g-~~ilvl~P--------~r~La~q~-----------~~~l 160 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN-TQVACTQP--------RRVAAMSV-----------AQRV 160 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT-CEEEEEES--------CHHHHHHH-----------HHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC-ceEEecCc--------hHHHHHHH-----------HHHH
Confidence 3567899999999999999999998765444332 01 01122111 00000000 0011
Q ss_pred HHhcCCC------------c-ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc--C
Q 024529 158 LGSFGVT------------G-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVLF--Q 221 (266)
Q Consensus 158 l~~~~l~------------~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~~--~ 221 (266)
.+.++.. . ...+..+..+|.|+.+|..+++.++.+++++|+|||.. +||......++..+... +
T Consensus 161 ~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 161 AEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp HHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 1111110 0 01123456789999999999999999999999999996 99987766666655443 2
Q ss_pred -CEEEE-EecCHHHHHhhcCE
Q 024529 222 -GGILM-VSHDEHLISGSVEE 240 (266)
Q Consensus 222 -~tiii-vtHd~~~~~~~~d~ 240 (266)
.+|++ +||+.+.+..+++.
T Consensus 241 ~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 241 LKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp CEEEEEESCSCCHHHHHHTTS
T ss_pred ceEEEEeccccHHHHHHHhcC
Confidence 35666 49998888777764
No 170
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.78 E-value=1.4e-09 Score=88.89 Aligned_cols=29 Identities=41% Similarity=0.594 Sum_probs=26.0
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCCCCCc
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGELQPSS 110 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 110 (266)
|++++|+||||||||||+++|+|++++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 67899999999999999999999987433
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.77 E-value=7.2e-09 Score=96.82 Aligned_cols=114 Identities=20% Similarity=0.302 Sum_probs=72.5
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 148 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 148 (266)
...++++++.+++| +.|+||+|+|||||+++|++..... +.++.-..+ . .
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----------f~~is~~~~--~---------------~ 87 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----------FFHISGSDF--V---------------E 87 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----------EEEEEGGGT--T---------------T
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----------eeeCCHHHH--H---------------H
Confidence 34677888888888 8899999999999999999843110 001100000 0 0
Q ss_pred CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHH---HHHH
Q 024529 149 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS----------NHLDLDAVE---ALIQ 215 (266)
Q Consensus 149 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt----------~~LD~~~~~---~l~~ 215 (266)
..+ =+|++++|-.+++|....|.+|++||+. ++.|..... .++.
T Consensus 88 ---------------------~~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~ 144 (476)
T 2ce7_A 88 ---------------------LFV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV 144 (476)
T ss_dssp ---------------------CCT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred ---------------------HHh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence 000 0267888999999999999999999993 355654433 3444
Q ss_pred HHhhc----CCEEEEEecCHHHHH
Q 024529 216 GLVLF----QGGILMVSHDEHLIS 235 (266)
Q Consensus 216 ~l~~~----~~tiiivtHd~~~~~ 235 (266)
.+..+ +..||.+||+.+.+.
T Consensus 145 ~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 145 EMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHhccCCCCCEEEEEecCChhhhc
Confidence 44322 336889999986553
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.76 E-value=4e-09 Score=86.86 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=29.9
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 111 (266)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999877665
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.69 E-value=6.1e-10 Score=92.04 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=39.7
Q ss_pred EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 113 (266)
+|++..+ +.....+..++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 4566655 34456688888889999999999999999999999999886 66766
No 174
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.67 E-value=5.9e-08 Score=87.73 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=75.1
Q ss_pred CCcE-EEEECCCCchHHHHHHHHhCCCC-----------CCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHH---HH-
Q 024529 81 LDSR-IAMVGPNGIGKSTILKLIAGELQ-----------PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM---MR- 144 (266)
Q Consensus 81 ~Ge~-~~l~G~nGsGKSTLl~~l~Gl~~-----------p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~---~~- 144 (266)
.|-. ++|+|++|||||||++.|+|... |+.|.|.+.+. .+.+. ..+-............+ ..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-~v~l~-DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-KIMLV-DTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-EEEEE-ECCCBCSSCCGGGHHHHHHHHHG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-EEEEE-eCCCchhcCCHHHHHHHHHHHHH
Confidence 3444 99999999999999999999875 56678877663 22221 11100000011111111 00
Q ss_pred --h---------CCCCc---HH---HHHHHHHhcCCCccc---ccCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEe
Q 024529 145 --C---------FPGVP---EQ---KLRAHLGSFGVTGNL---ALQPMYTLSGGQKSRVAFA----KIT-FKKPHIILLD 199 (266)
Q Consensus 145 --~---------~~~~~---~~---~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqRv~lA----ral-~~~p~lllLD 199 (266)
. ..... .+ .+.++++.+++.+.. ...++..+|+|+++++.++ +.+ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 0 01111 11 234566666653211 1234567898988888877 665 444454
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q 024529 200 EPSNHLDLDAVEALIQGLVL 219 (266)
Q Consensus 200 EPt~~LD~~~~~~l~~~l~~ 219 (266)
+|+|++|..+...+++.+.+
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 89999999988888877754
No 175
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=1.4e-07 Score=84.68 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCc--EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHH
Q 024529 81 LDS--RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 158 (266)
Q Consensus 81 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (266)
.+. .+.|.||+|+|||||++.+++...+..+ ..+.++.... ..+.. .-+..++
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~~------~~~~~------------~~~~~l~ 95 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGFI------YRNFT------------AIIGEIA 95 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETTT------CCSHH------------HHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCcc------CCCHH------------HHHHHHH
Confidence 446 8999999999999999999998766531 1112222110 01111 1122334
Q ss_pred HhcCCCcccccCCCCCCChHHHHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCCEEEEEecCH
Q 024529 159 GSFGVTGNLALQPMYTLSGGQKSRVAFAKIT-FKKPHIILLDEPSNHLDLDAVEALIQGLVL------FQGGILMVSHDE 231 (266)
Q Consensus 159 ~~~~l~~~~~~~~~~~LSgGqkqRv~lAral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivtHd~ 231 (266)
..++.. .+....+.++.........- ..+|.+|++||+... |......+...+.+ .+.++|++||+.
T Consensus 96 ~~l~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 96 RSLNIP-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHTTCC-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHhCcc-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 444432 11123444443322211111 245889999999876 88888888777643 245789999998
Q ss_pred HHHHhh
Q 024529 232 HLISGS 237 (266)
Q Consensus 232 ~~~~~~ 237 (266)
++...+
T Consensus 170 ~~~~~l 175 (389)
T 1fnn_A 170 AVLNNL 175 (389)
T ss_dssp HHHHTS
T ss_pred hHHHHh
Confidence 765443
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.61 E-value=1.1e-08 Score=83.17 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEE
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVF 114 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~ 114 (266)
+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 6899999999999999999999998764 445543
No 177
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.2e-08 Score=82.51 Aligned_cols=38 Identities=34% Similarity=0.373 Sum_probs=24.6
Q ss_pred CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
...++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999754
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.56 E-value=1.3e-07 Score=84.47 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=78.2
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
-|+.+.--+.+|+++.|.|++|+|||||+.-++.......+. +.|+.- ........
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~--------Vl~fSl--------Ems~~ql~-------- 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG--------VAVFSL--------EMSAEQLA-------- 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE--------EEEEES--------SSCHHHHH--------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe--------EEEEeC--------CCCHHHHH--------
Confidence 355555568899999999999999999998887643322222 223221 11111111
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hc-CCEEEEEe
Q 024529 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LF-QGGILMVS 228 (266)
Q Consensus 151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~-~~tiiivt 228 (266)
.++......+.+.. +. -+.||.++.+|+..|...+.++++++.|+|... +......+..++ +. +..+|||.
T Consensus 91 -~Rlls~~~~v~~~~-l~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 91 -LRALSDLTSINMHD-LE---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -HHHHHHHHCCCHHH-HH---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -HHHHHHhhCCCHHH-Hh---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 11112222222221 11 147999999999999999999999999998654 444444444444 33 44667665
Q ss_pred c
Q 024529 229 H 229 (266)
Q Consensus 229 H 229 (266)
|
T Consensus 164 y 164 (338)
T 4a1f_A 164 Y 164 (338)
T ss_dssp E
T ss_pred c
Confidence 3
No 179
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.55 E-value=2e-08 Score=82.86 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.1
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~ 117 (266)
.++.++|++++|+||||||||||+++|+|.+ |.+.+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 4667789999999999999999999999976 6666543
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.55 E-value=1.7e-07 Score=84.35 Aligned_cols=42 Identities=36% Similarity=0.411 Sum_probs=32.9
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC--CCCCCceEEE
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVF 114 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~ 114 (266)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47899999998 899999999999999999999 5677777664
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.53 E-value=1.3e-08 Score=87.36 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=33.5
Q ss_pred eCCcEEEEECCCCchHHHHHHHHh---CCCCCCceEEE
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVF 114 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~ 114 (266)
.+|++++|+|||||||||++++|+ |+..|++|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
No 182
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.51 E-value=3.1e-08 Score=91.31 Aligned_cols=49 Identities=29% Similarity=0.461 Sum_probs=37.9
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 111 (266)
|+++|+ ++|+ +. . .+++.+|++++|+|||||||||||++|+++..|.++
T Consensus 7 l~~~~~-~~~~-~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 7 LELSNF-KSYR-GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEESC-SSCC-SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEeCE-EEEC-Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 778888 6773 21 2 355778999999999999999999999999888653
No 183
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.48 E-value=1.8e-06 Score=77.69 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=31.4
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 113 (266)
-+++|+++.|.||+|||||||+..++....+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666654
No 184
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.47 E-value=3.4e-09 Score=90.53 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=46.8
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 116 (266)
..+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.+.+.
T Consensus 25 ~~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 25 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 356677877773 446889999999999 99999999999999999999875 5666544
No 185
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.46 E-value=4.2e-09 Score=93.67 Aligned_cols=135 Identities=19% Similarity=0.145 Sum_probs=76.3
Q ss_pred EeeEEEcCCCCcceeeceEEEeCCc------EEEEECCCCchHHHHHHHHhCCCC--CCceEEEEcCeeeEEEEeccccC
Q 024529 59 SDASFGYPGGPILFKNLNFGIDLDS------RIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAKVRIAVFSQHHVD 130 (266)
Q Consensus 59 ~~l~~~y~~~~~~l~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~~~i~~~~q~~~~ 130 (266)
+.+++.| ++...+++++..+..+. ++||+||||||||||+++|++++. |++|.+ +++.++.+.
T Consensus 64 rll~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v--------~~i~~D~f~ 134 (321)
T 3tqc_A 64 RLLSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV--------EVITTDGFL 134 (321)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE--------EEEEGGGGB
T ss_pred HHHHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE--------EEEeecccc
Confidence 3445556 34457888888888777 999999999999999999999987 455543 344444321
Q ss_pred CCCCCCcHHHHH--HHh--CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529 131 GLDLSSNPLLYM--MRC--FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205 (266)
Q Consensus 131 ~~~~~~~~~~~~--~~~--~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L 205 (266)
......... ... .+ ..+.....+.+..+.-.......| .+|.+..+|+.-+...+..|+|+|++.|..-.
T Consensus 135 ---~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~ 209 (321)
T 3tqc_A 135 ---YSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQ 209 (321)
T ss_dssp ---CCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTC
T ss_pred ---cchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEcccccc
Confidence 111111110 000 01 122334444444432211011123 23333334443233456789999999998877
Q ss_pred CH
Q 024529 206 DL 207 (266)
Q Consensus 206 D~ 207 (266)
|.
T Consensus 210 ~~ 211 (321)
T 3tqc_A 210 TG 211 (321)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 186
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.44 E-value=8.4e-08 Score=79.68 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=27.4
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.44 E-value=5.5e-09 Score=90.62 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=46.2
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 116 (266)
.+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.|.+.
T Consensus 50 ~~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 50 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 45677777773 456889999999999 99999999999999999999875 6666654
No 188
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.42 E-value=1.2e-07 Score=84.65 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=66.7
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (266)
..+..+.|.||+|+|||||++.+++...+..|. ...+.++..... ... ......++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~~------~~~------------~~~~~~i~~ 99 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQI------DTP------------YRVLADLLE 99 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHHH------CSH------------HHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCCC------CCH------------HHHHHHHHH
Confidence 457899999999999999999999876543221 001112211100 011 111223333
Q ss_pred hcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCCEEEEEecCH
Q 024529 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEPSNHLD---LDAVEALIQGLVL---FQGGILMVSHDE 231 (266)
Q Consensus 160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLDEPt~~LD---~~~~~~l~~~l~~---~~~tiiivtHd~ 231 (266)
.++... +....+..+.... +..++ ...|.+|++||+....+ ......+.+.+.. .+.++|++||+.
T Consensus 100 ~l~~~~-----~~~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 100 SLDVKV-----PFTGLSIAELYRR-LVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp TTSCCC-----CSSSCCHHHHHHH-HHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HhCCCC-----CCCCCCHHHHHHH-HHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 333321 1123344442221 22222 23388999999987652 3344455555532 234789999988
Q ss_pred HHHH
Q 024529 232 HLIS 235 (266)
Q Consensus 232 ~~~~ 235 (266)
.+..
T Consensus 174 ~~~~ 177 (386)
T 2qby_A 174 KFVD 177 (386)
T ss_dssp GGGG
T ss_pred ChHh
Confidence 6543
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.41 E-value=7e-08 Score=81.41 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=31.0
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 116 (266)
+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 334578999999999999999999999997 5766543
No 190
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.40 E-value=5.1e-08 Score=80.50 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=33.1
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 115 (266)
.++|++++|+|+||||||||+++|++.+++..|.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 5689999999999999999999999998888887753
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.38 E-value=9.9e-07 Score=78.25 Aligned_cols=148 Identities=11% Similarity=0.162 Sum_probs=74.7
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCC-CCCC-ceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 155 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (266)
-+++|+++.|.||+|||||||+..++.. ..|. .|- ....+.|+.-+. .+....+....... +.+.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg----~~~~vlyi~~e~----~~~~~~l~~~~~~~-g~~~~~-- 171 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG----LSGKAVYIDTEG----TFRWERIENMAKAL-GLDIDN-- 171 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC----CSCEEEEEESSS----CCCHHHHHHHHHHT-TCCHHH--
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC----CCCeEEEEECCC----CCCHHHHHHHHHHh-CCCHHH--
Confidence 5889999999999999999999988764 2331 110 001223332221 01111111111111 122211
Q ss_pred HHHHhcCCCcccccCCCCCCChH-HHHHHHHHHHHc---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHH--
Q 024529 156 AHLGSFGVTGNLALQPMYTLSGG-QKSRVAFAKITF---KKPHIILLDEPSNHLDL--------DA----VEALIQGL-- 217 (266)
Q Consensus 156 ~~l~~~~l~~~~~~~~~~~LSgG-qkqRv~lAral~---~~p~lllLDEPt~~LD~--------~~----~~~l~~~l-- 217 (266)
+++.+-+ ....+.. +.+.+..++.++ .+|+++++|+.++-... .. ..+++..|
T Consensus 172 -~~~~l~~--------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~ 242 (324)
T 2z43_A 172 -VMNNIYY--------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTR 242 (324)
T ss_dssp -HHHTEEE--------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHH
T ss_pred -HhccEEE--------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHH
Confidence 2222111 1122333 235566677776 67999999999986532 11 12333333
Q ss_pred --hhcCCEEEEEecCHHH----------------HHhhcCEEEEEe
Q 024529 218 --VLFQGGILMVSHDEHL----------------ISGSVEELWVVS 245 (266)
Q Consensus 218 --~~~~~tiiivtHd~~~----------------~~~~~d~i~~l~ 245 (266)
++++.+||++.|-... +...+|.++.|.
T Consensus 243 la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~ 288 (324)
T 2z43_A 243 LAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLK 288 (324)
T ss_dssp HHHHHTCEEEEEEEC------------------------CEEEEEE
T ss_pred HHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEE
Confidence 3457789999885432 334567777775
No 192
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.38 E-value=1e-07 Score=78.89 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=26.7
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999865
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.37 E-value=4.9e-08 Score=94.88 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=70.4
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 153 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (266)
++++++|..++|+|+||+|||||++.|++...+ ..|+| .++. .. .+ ..... ..... ......
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~---------~~--~d--~~~~e-~~~gi-ti~~~~ 66 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGT---------TT--TD--YTPEA-KLHRT-TVRTGV 66 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTC---------CS--SC--CSHHH-HHTTS-CCSCEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCc---------cc--cc--CCHHH-HhcCC-eEEecc
Confidence 466788999999999999999999999976554 55655 2211 00 00 01110 00000 000000
Q ss_pred HHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 024529 154 LRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH 232 (266)
Q Consensus 154 ~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~ 232 (266)
. .+..-+....+.+.+.. .++ ......+-..+.-++++| |++++++.+.. +++.+...+..+|++.|.++
T Consensus 67 ~--~~~~~~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 67 A--PLLFRGHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp E--EEEETTEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHHTTCCEEEEEECGG
T ss_pred e--EEeeCCEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHHHccCCEEEEecCCc
Confidence 0 00000011112222211 111 122233335688899999 99999998764 45555556778888899877
Q ss_pred H
Q 024529 233 L 233 (266)
Q Consensus 233 ~ 233 (266)
.
T Consensus 138 ~ 138 (665)
T 2dy1_A 138 K 138 (665)
T ss_dssp G
T ss_pred h
Confidence 5
No 194
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.35 E-value=6.6e-08 Score=87.54 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=47.5
Q ss_pred cEEEEeeEEEcCCCCccee--------------eceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 55 IISFSDASFGYPGGPILFK--------------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~--------------~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
-+.++|+++.|+..+..++ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3778999999987777888 899999999999999999999999999998864
No 195
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.34 E-value=5.9e-08 Score=86.24 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=39.7
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 115 (266)
+++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36889999999999999999999999999999999888888764
No 196
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.32 E-value=4.8e-09 Score=92.41 Aligned_cols=148 Identities=15% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEeccccC--CCCCC-Cc--HHHHHHHhCCCCcHHHH
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVD--GLDLS-SN--PLLYMMRCFPGVPEQKL 154 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~--~~~~~-~~--~~~~~~~~~~~~~~~~~ 154 (266)
++.+++|+|++|+|||||++.|.|... +.++..........+++.+.... ..+.. .. ....+...+.. .+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~----~~ 82 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNK----AA 82 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTC----CT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHH----HH
Confidence 344899999999999999999999732 11111000011224444443210 01110 00 00000000000 00
Q ss_pred HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHH---HHHHhh-cCC--EEE
Q 024529 155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLDLDA-VEAL---IQGLVL-FQG--GIL 225 (266)
Q Consensus 155 ~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~--~~p~lllLDEPt~~LD~~~-~~~l---~~~l~~-~~~--tii 225 (266)
...+..+++.-...+. ..+|+|++ .+++.+. ..|.++++ |.+|... ...+ ++.+.+ ++. .+.
T Consensus 83 ~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 83 SSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp TSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEE
Confidence 0111111111111121 23899886 5566665 67889988 7888754 3333 333433 333 456
Q ss_pred EEecCHHHHHhhcCEE
Q 024529 226 MVSHDEHLISGSVEEL 241 (266)
Q Consensus 226 ivtHd~~~~~~~~d~i 241 (266)
+++|+-+-+..++|.+
T Consensus 154 iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 154 ISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCTTTTTTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 6777766666655544
No 197
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.31 E-value=1.5e-06 Score=80.21 Aligned_cols=109 Identities=17% Similarity=0.087 Sum_probs=63.4
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 160 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (266)
++.+++++|||||||||++..|++.+.+..+.|.+ +..+. .. +. ..+....+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll--------v~~D~------~r-~~----------a~eqL~~~~~~ 150 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL--------VAADV------YR-PA----------AYDQLLQLGNQ 150 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE--------EEECC------SC-HH----------HHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--------EecCc------cc-hh----------HHHHHHHHHHh
Confidence 57899999999999999999999988877666642 21111 10 00 01222333344
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 024529 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS-NH--LDLDAVEALIQGL 217 (266)
Q Consensus 161 ~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt-~~--LD~~~~~~l~~~l 217 (266)
.+++-.. .....+.-.-.+-+++.+...+++++|+|+|- .+ .|+....++...+
T Consensus 151 ~gv~~~~---~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 151 IGVQVYG---EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp TTCCEEC---CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred cCCceee---ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 4543211 11112222223345666666788999999887 44 6776655555443
No 198
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.31 E-value=8.3e-07 Score=81.68 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=44.0
Q ss_pred EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (266)
Q Consensus 58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 115 (266)
.+++++.|++. . ++++|+ +|++++++|+|||||||++..|++.+.+..|.|.+
T Consensus 79 ~~~L~~~~~~~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 79 YEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHhCCC-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45677778433 2 678888 89999999999999999999999999988887764
No 199
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.30 E-value=1.6e-06 Score=77.68 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.7
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
No 200
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.29 E-value=1.2e-07 Score=89.99 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=35.4
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce-EEE-EcC
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVF-RSA 117 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~-~~~ 117 (266)
.+.+|++++|+|+||||||||+++|+|.+.|++| .+. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5779999999999999999999999999999887 664 554
No 201
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.28 E-value=8.7e-07 Score=78.37 Aligned_cols=131 Identities=11% Similarity=0.155 Sum_probs=74.5
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 149 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 149 (266)
.-|+.+.--+.+|+++.|.|++|+|||||+..++....- .| ..+.|+.-+ .......
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~slE--------~s~~~l~------- 112 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSLE--------MGKKENI------- 112 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEESS--------SCHHHHH-------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEECC--------CCHHHHH-------
Confidence 346776656899999999999999999998887643211 12 122333211 1111110
Q ss_pred cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hcCCE--EEE
Q 024529 150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILM 226 (266)
Q Consensus 150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~t--iii 226 (266)
.++......+.+.. +.... ..||.++.+|+..|...+.++++++.|+|. +++......+..+. +.+.. +|+
T Consensus 113 --~R~~~~~~~i~~~~-l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVV 186 (315)
T 3bh0_A 113 --KRLIVTAGSINAQK-IKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVM 186 (315)
T ss_dssp --HHHHHHHTTCCHHH-HHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred --HHHHHHHcCCCHHH-HhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 11111111222211 11100 128889999999888888888899988886 44444443334333 33445 777
Q ss_pred Eec
Q 024529 227 VSH 229 (266)
Q Consensus 227 vtH 229 (266)
|.|
T Consensus 187 ID~ 189 (315)
T 3bh0_A 187 IDY 189 (315)
T ss_dssp EEC
T ss_pred EeC
Confidence 765
No 202
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.27 E-value=2.3e-07 Score=74.41 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=27.6
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 116 (266)
.+|++++|+|+||||||||+++|++.+ |.+.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 468999999999999999999999864 555543
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.26 E-value=3.2e-07 Score=73.25 Aligned_cols=28 Identities=43% Similarity=0.559 Sum_probs=25.1
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
.|.+++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999997653
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.25 E-value=8.8e-09 Score=92.29 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=46.9
Q ss_pred EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
++.+++.+.| +...+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|.+.
T Consensus 31 ie~~~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 31 VESRHPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp HHCCCHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred hhcCCchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4444555555 334578899999999999999999999999999999998877777654
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.25 E-value=8.2e-06 Score=70.79 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=63.8
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 160 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (266)
++..+.|.||+|+|||||++++++.... .+ ..+.- . .+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~~--------~~i~~---~--~l-------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---TF--------LNISA---A--SL-------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---EE--------EEEES---T--TT--------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---Ce--------EEeeH---H--HH--------------------------
Confidence 5678999999999999999999985421 10 00000 0 00
Q ss_pred cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhcC-------CE
Q 024529 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----------DAVEALIQGLVLFQ-------GG 223 (266)
Q Consensus 161 ~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~----------~~~~~l~~~l~~~~-------~t 223 (266)
.... .-+++++.+..+..+...+|.+|++||+.+-++. .....++..+.... ..
T Consensus 91 -------~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 91 -------TSKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp -------SSSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred -------hhcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 0000 1246777888888888889999999999876653 22334555554331 24
Q ss_pred EEEEecCHH
Q 024529 224 ILMVSHDEH 232 (266)
Q Consensus 224 iiivtHd~~ 232 (266)
||.+|++.+
T Consensus 162 vi~~tn~~~ 170 (297)
T 3b9p_A 162 VLAATNRPQ 170 (297)
T ss_dssp EEEEESCGG
T ss_pred EEeecCChh
Confidence 677888653
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.20 E-value=7.1e-07 Score=73.59 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=28.3
Q ss_pred eEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
--++++|.+++|+|++|||||||+++|++.++
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567899999999999999999999999864
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.20 E-value=7.1e-07 Score=70.35 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=24.9
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 103 (266)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666654 99999999999999999986
No 208
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.13 E-value=1.6e-05 Score=66.91 Aligned_cols=29 Identities=45% Similarity=0.542 Sum_probs=24.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCceE
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPSSGT 112 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 112 (266)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 58999999999999999999987766653
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.09 E-value=3.2e-07 Score=76.50 Aligned_cols=34 Identities=38% Similarity=0.649 Sum_probs=28.6
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC---CCCceEEEE
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR 115 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~ 115 (266)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998765 567777653
No 210
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.06 E-value=1.2e-06 Score=73.99 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=30.7
Q ss_pred eeeceEEEe---CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 72 FKNLNFGID---LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 72 l~~vsl~i~---~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 566777776 8999999999999999999999998877 55553
No 211
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.99 E-value=1.5e-06 Score=69.86 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=26.7
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 111 (266)
.+|++++|+|++||||||+.++|++.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36899999999999999999999997655 44
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.98 E-value=1.2e-05 Score=74.41 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=29.8
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHh---hcCCEEEEEecC
Q 024529 191 KKPHIILLDEPSNHLDL-DAVEALIQGLV---LFQGGILMVSHD 230 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~-~~~~~l~~~l~---~~~~tiiivtHd 230 (266)
.+|++|++||+..-.+. .....++..+. +.+..||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999877664 45566666554 345688999997
No 213
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.96 E-value=1.8e-06 Score=77.51 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=30.2
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
+++.+++|+|++|||||||++.|+|.+.+..|.|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 35779999999999999999999998777777664
No 214
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.96 E-value=1.1e-06 Score=83.49 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=44.9
Q ss_pred EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529 58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (266)
Q Consensus 58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 115 (266)
++++.+.| ....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|..
T Consensus 86 ~~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 86 LEKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CHHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 45555555 2334678888888 89999999999999999999999999887777653
No 215
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.94 E-value=4.2e-06 Score=69.27 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=24.6
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 103 (266)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4456666654 99999999999999999884
No 216
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.93 E-value=1.9e-06 Score=70.53 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=31.4
Q ss_pred EEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 62 ~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
++.|++-..+++++||..+++ .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 445665556889999988777 578999999999999999987
No 217
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.90 E-value=1.9e-06 Score=81.22 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.0
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.+++++|++.+| +.+|+|+|||||||||.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 568899999999 9999999999999999999655
No 218
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.90 E-value=0.00014 Score=65.30 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=24.5
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+++|+++.|.|++|||||||...++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999887754
No 219
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.83 E-value=1.5e-06 Score=78.31 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=36.5
Q ss_pred CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceE
Q 024529 54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112 (266)
Q Consensus 54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 112 (266)
..+.+.+++..|+ .+.++++++|.| +|+|++|+|||||++.|.|...+..+.
T Consensus 16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3588899998884 456788999877 999999999999999998875554443
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.82 E-value=3.7e-06 Score=69.65 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=32.8
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce--EEEE
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG--TVFR 115 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G--~i~~ 115 (266)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 44578999999999999999999999998877777 4443
No 221
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.81 E-value=8.1e-06 Score=66.10 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.3
Q ss_pred eceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56888889999999999999999999999864
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.81 E-value=7.7e-07 Score=78.19 Aligned_cols=54 Identities=20% Similarity=0.108 Sum_probs=43.3
Q ss_pred EEEeeEEEcCCCCcceee-ceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 57 SFSDASFGYPGGPILFKN-LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
..+++...|++.. ++ ++|+.+ |.+++++|+||+||||++..|++.+.+..|.|.
T Consensus 76 ~~~~l~~~~~~~~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 76 VYDELSNLFGGDK---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp HHHHHHHHTTCSC---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcccc---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3456777774332 56 788876 999999999999999999999999887777665
No 223
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.79 E-value=8.2e-06 Score=66.84 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q 024529 84 RIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~G 104 (266)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 224
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.76 E-value=6.1e-06 Score=77.44 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=44.6
Q ss_pred cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529 55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116 (266)
Q Consensus 55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 116 (266)
..+++++...|. ...+++++++.+++| +.|+||||+|||||+++|++... .+.+.++
T Consensus 40 k~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 40 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp HHHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 345666666663 345789999999999 99999999999999999999764 4555543
No 225
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.76 E-value=2.4e-05 Score=70.51 Aligned_cols=43 Identities=21% Similarity=0.423 Sum_probs=32.7
Q ss_pred EEEEeeEEE-cCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529 56 ISFSDASFG-YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103 (266)
Q Consensus 56 l~~~~l~~~-y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 103 (266)
..+..|+.. |. .+++..+++.+| +++|+|||||||||+|.+|.
T Consensus 3 M~l~~L~l~nFr----~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK----SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET----TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc----cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445555543 31 357788888775 99999999999999999985
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.75 E-value=1.8e-05 Score=64.05 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=20.8
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678999998876 789999999999999999987
No 227
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.74 E-value=1.6e-05 Score=63.43 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.74 E-value=4.7e-05 Score=67.10 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=24.6
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
-+++|+++.|.||+|||||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988874
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.73 E-value=3.5e-05 Score=67.00 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=26.7
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 113 (266)
..+.|+||+|+|||||.++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999877666543
No 230
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.73 E-value=7.3e-06 Score=66.24 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=29.7
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 113 (266)
..+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999999999999998876665554
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.73 E-value=1.4e-05 Score=65.67 Aligned_cols=29 Identities=28% Similarity=0.599 Sum_probs=25.9
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
..+|.+++|+||+|||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999987663
No 232
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=1e-06 Score=78.40 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=39.7
Q ss_pred EEEcCCCCcceeeceEEEeCCcE--EEEECCCCchHHHHHHHHhCCCCCCce
Q 024529 62 SFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSG 111 (266)
Q Consensus 62 ~~~y~~~~~~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G 111 (266)
+..| +...+++.++..+..|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 25 ~~~~-g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 25 DEVY-GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp GGCC-SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHhc-CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3345 344578899999999998 999999999999999999997655443
No 233
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.70 E-value=3.1e-05 Score=71.37 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=29.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCC------------CCceEEEEcCe
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQ------------PSSGTVFRSAK 118 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~~~ 118 (266)
.++|+|+||+|||||++.|+|... +..|.+.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 799999999999999999999854 56677777664
No 234
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.69 E-value=0.00013 Score=60.00 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=31.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHL 233 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~ 233 (266)
.+|.+|++||.-. +|......+...+.+.. ..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 3578999999765 78888888888887642 357888887653
No 235
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.67 E-value=2.4e-05 Score=71.21 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=31.4
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCC-----------CCCCceEEEEcC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGE-----------LQPSSGTVFRSA 117 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~ 117 (266)
+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 457788999999999999999999998 567778776543
No 236
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.67 E-value=2.3e-05 Score=62.98 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCCCc
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQPSS 110 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 110 (266)
.++|+|++|+|||||++.++|...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 589999999999999999999754433
No 237
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.66 E-value=3.1e-05 Score=61.04 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=21.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
No 238
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.62 E-value=0.00016 Score=66.76 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=73.4
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
-|+.+.--+.+|+++.|.|++|+|||||+..++.......|. .+.|+.- ...... +.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~-------~vl~~sl--------E~~~~~-l~------- 245 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV-------GVGIYSL--------EMPAAQ-LT------- 245 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CEEEEES--------SSCHHH-HH-------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-------eEEEEEC--------CCCHHH-HH-------
Confidence 466666568999999999999999999998887644322221 1222211 111111 10
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hcCCEEEEEe
Q 024529 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGGILMVS 228 (266)
Q Consensus 151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~tiiivt 228 (266)
.++.. ...+++... ..-+.||..+.+|+.-|...+.+.++++.|+|. +++......+..+. +.+..+|+|.
T Consensus 246 -~R~~~--~~~~i~~~~--l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 -LRMMC--SEARIDMNR--VRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp -HHHHH--HHTTCCTTT--CCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred -HHHHH--HHcCCCHHH--HhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 01111 123332111 112468999999988887777778888888764 44544444344333 4455666664
No 239
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.57 E-value=7.8e-06 Score=73.29 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=33.0
Q ss_pred cceeeceEEEeCCcE--EEEECCCCchHHHHHHHHhCCC
Q 024529 70 ILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888888999998 9999999999999999999854
No 240
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.57 E-value=0.00011 Score=63.04 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+.++.-+.|.||.|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998764
No 241
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.56 E-value=0.00063 Score=61.26 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.9
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
-+++|+++.|.||.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999877754
No 242
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.56 E-value=3.1e-05 Score=63.38 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.5
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 243
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.53 E-value=3.7e-05 Score=61.78 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.1
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.50 E-value=4.6e-05 Score=64.08 Aligned_cols=26 Identities=42% Similarity=0.497 Sum_probs=23.4
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999986
No 245
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.48 E-value=5.7e-05 Score=60.35 Aligned_cols=22 Identities=45% Similarity=0.828 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 246
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=3.5e-05 Score=65.42 Aligned_cols=35 Identities=43% Similarity=0.628 Sum_probs=24.9
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.++++++.++.| +.|+||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 89999999999999999998653
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.43 E-value=3e-05 Score=62.67 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.1
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
.+++|+|++|||||||++.|.+.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999987544
No 248
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.42 E-value=7.4e-05 Score=58.92 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
No 249
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.39 E-value=9.9e-05 Score=58.77 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.6
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
No 250
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.37 E-value=5e-05 Score=64.23 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.9
Q ss_pred CcEEEEECCCCchHHHHHHHHhC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 251
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.35 E-value=0.00012 Score=67.85 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 024529 178 GQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVLFQGGILMVSHDEHLI 234 (266)
Q Consensus 178 GqkqRv~lAral~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~ 234 (266)
.+.+....+...+.+++++|+..... ++.. ...++.+.+.+.+..+|+|.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~-~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTA-ADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCH-HHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh-HHHHHHHHHHHcCCCEEEEEECccch
Confidence 46777777888888888877765544 4444 34677788877777788777766654
No 252
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.35 E-value=0.00021 Score=63.59 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
..+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998755
No 253
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.33 E-value=6e-05 Score=74.72 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=29.0
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
|.+.+|+.+.|+||||||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999999998754
No 254
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.33 E-value=0.00082 Score=62.06 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=27.5
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
-|+.+.--+.+|+.+.|.|+.|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3455443589999999999999999999877764
No 255
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.31 E-value=0.00013 Score=58.52 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.7
Q ss_pred CcEEEEECCCCchHHHHHHHHhCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
|.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999763
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.25 E-value=0.00014 Score=57.08 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=18.3
Q ss_pred EEEEECCCCchHHHHHHHH
Q 024529 84 RIAMVGPNGIGKSTILKLI 102 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l 102 (266)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.25 E-value=6.3e-05 Score=64.03 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=26.2
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
....+.++.|+|++||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999999998654
No 258
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.22 E-value=0.00016 Score=58.56 Aligned_cols=23 Identities=48% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998744
No 259
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.22 E-value=0.00017 Score=59.60 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCchHHHHHHHHhC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
.+-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 260
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.22 E-value=3.7e-05 Score=63.14 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=22.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
+++|.|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887654
No 261
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.21 E-value=0.00016 Score=58.22 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999753
No 262
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.21 E-value=0.00016 Score=58.97 Aligned_cols=22 Identities=50% Similarity=0.813 Sum_probs=19.3
Q ss_pred EEEECCCCchHHHHHHHHhCCC
Q 024529 85 IAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 85 ~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+.|+||||||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.20 E-value=0.00016 Score=57.66 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998643
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.20 E-value=0.00015 Score=61.76 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998643
No 265
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.17 E-value=0.0034 Score=57.83 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
++.+++++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999876654
No 266
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.17 E-value=0.00023 Score=57.79 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.16 E-value=0.0002 Score=57.22 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
..+..+.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999983
No 268
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.16 E-value=0.00019 Score=61.65 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEE
Q 024529 201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELW 242 (266)
Q Consensus 201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~ 242 (266)
|||+.+..+...+++.+.+. ..+..+.+|..+.++..++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 89999988887777766432 2344667788787777776654
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.15 E-value=0.00024 Score=56.93 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.+..+.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999753
No 270
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.15 E-value=0.0019 Score=56.98 Aligned_cols=120 Identities=11% Similarity=0.170 Sum_probs=64.7
Q ss_pred EeCCcEEEEECCCCchHHHH-HHHHhCCCCCC-ceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 024529 79 IDLDSRIAMVGPNGIGKSTI-LKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (266)
+++| ++-|.||.||||||| +.+++...+.. .|.+ .|+.-+. .+. ..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~v--------lyId~E~----s~~---------------~~---- 73 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVC--------LFYDSEF----GIT---------------PA---- 73 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEE--------EEEESSC----CCC---------------HH----
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceE--------EEEeccc----hhh---------------HH----
Confidence 5788 899999999999999 44444433211 2222 2332211 000 11
Q ss_pred HHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H--H-----------HH-HH-----
Q 024529 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--F--KKPHIILLDEPSNHLD-L--D-----------AV-EA----- 212 (266)
Q Consensus 157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~--~~p~lllLDEPt~~LD-~--~-----------~~-~~----- 212 (266)
.++++|++.+ +..+..-.-+|.+.+.++.++ + .+|+++++|--++-.- . . .+ +.
T Consensus 74 ra~~lGvd~d--~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~L 151 (333)
T 3io5_A 74 YLRSMGVDPE--RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLF 151 (333)
T ss_dssp HHHHTTCCGG--GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHH
T ss_pred HHHHhCCCHH--HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHH
Confidence 1344555321 111112224566657777776 4 3699999998877641 0 0 11 11
Q ss_pred --HHHHHhhcCCEEEEEecCHH
Q 024529 213 --LIQGLVLFQGGILMVSHDEH 232 (266)
Q Consensus 213 --l~~~l~~~~~tiiivtHd~~ 232 (266)
+...+++.+.++|++-|-..
T Consensus 152 rkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 152 RIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHhCCEEEEECCeee
Confidence 22234566789999999765
No 271
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.14 E-value=0.00023 Score=56.40 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.2
Q ss_pred cEEEEECCCCchHHHHHHHHhC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~G 104 (266)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 272
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.00027 Score=57.55 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
+|-+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987543
No 273
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.09 E-value=0.00041 Score=62.36 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=28.9
Q ss_pred CcEEEEECCCCchHHHHHHHHhC-----------CCCCCceEEEEcC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAG-----------ELQPSSGTVFRSA 117 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~~ 117 (266)
|-.++|+|.+|+|||||++.|+| -+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999998 3356677776543
No 274
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00026 Score=57.41 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.6
Q ss_pred CcEEEEECCCCchHHHHHHHHhCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 275
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.08 E-value=0.00016 Score=65.37 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=29.7
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 115 (266)
.+..++|+||+|||||||++.|++...+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56789999999999999999999877777777653
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.08 E-value=0.00028 Score=57.63 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
..|-+++|+|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999753
No 277
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.06 E-value=0.00031 Score=56.62 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++-+++|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999753
No 278
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.05 E-value=0.00016 Score=63.09 Aligned_cols=30 Identities=37% Similarity=0.635 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+.+.++..+.|.||+|+|||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 446788899999999999999999999865
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00033 Score=56.23 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.8
Q ss_pred CcEEEEECCCCchHHHHHHHHhC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
+.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999874
No 280
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.03 E-value=0.00033 Score=57.29 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.4
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
..+|-+++|+|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.03 E-value=0.00026 Score=61.50 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
..+.++.|.||+||||||+.+.|+.-+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998643
No 282
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.02 E-value=0.00096 Score=62.19 Aligned_cols=57 Identities=23% Similarity=0.167 Sum_probs=48.6
Q ss_pred EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529 57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117 (266)
Q Consensus 57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~ 117 (266)
.+.+++... ..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+++
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 345555432 2479999999999 99999999999999999999999999999998655
No 283
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.00 E-value=0.00036 Score=56.27 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.00 E-value=0.00033 Score=56.13 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+++|.|+.||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
No 285
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.99 E-value=0.00032 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
No 286
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.98 E-value=0.00035 Score=56.09 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.5
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999886543
No 287
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00037 Score=55.84 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=21.8
Q ss_pred cEEEEECCCCchHHHHHHHHhCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
=.++|+|+.|||||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999864
No 288
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.96 E-value=0.00041 Score=59.85 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 289
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.95 E-value=0.00027 Score=59.21 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHh-hcC-C-EEEE-EecCHHHHHhhcC
Q 024529 175 LSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLV-LFQ-G-GILM-VSHDEHLISGSVE 239 (266)
Q Consensus 175 LSgGqkqRv~lAral~~~p~lllLDEPt~-~LD~~~~~~l~~~l~-~~~-~-tiii-vtHd~~~~~~~~d 239 (266)
.+.|...+.. ...+.+.+++++||.-. ++|.......++.+. ... . ++++ .|.+.+.+.++.+
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 4556666653 33688999999999976 577766544444443 222 2 3333 3556555555443
No 290
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00032 Score=55.94 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=17.7
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999753
No 291
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.95 E-value=0.001 Score=53.26 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=21.9
Q ss_pred EEEEECCCCchHHHHHHHHhC-C----CCCCce
Q 024529 84 RIAMVGPNGIGKSTILKLIAG-E----LQPSSG 111 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~G-l----~~p~~G 111 (266)
.++|+|++|+|||||++.+.+ . +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 589999999999999975554 3 456655
No 292
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.91 E-value=0.00041 Score=55.38 Aligned_cols=22 Identities=45% Similarity=0.752 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999986
No 293
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.91 E-value=0.00037 Score=56.23 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+..+-+++|+|+.||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 346779999999999999999999764
No 294
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.90 E-value=0.00042 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999988543
No 295
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.90 E-value=0.00053 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.801 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999999864
No 296
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.90 E-value=0.0058 Score=64.71 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+++|+++.|.||.|+|||||.-.++..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999998777643
No 297
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.89 E-value=0.012 Score=54.81 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=26.5
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
|+.+---+.+|+++.|.|++|+|||||+--++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444433589999999999999999999776654
No 298
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00058 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 299
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.88 E-value=0.00057 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998754
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.87 E-value=0.00048 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 301
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.87 E-value=0.00061 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+|-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999764
No 302
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.87 E-value=0.00053 Score=56.31 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q 024529 84 RIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~G 104 (266)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999964
No 303
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.85 E-value=0.00054 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 304
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.84 E-value=0.00057 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 305
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.84 E-value=0.00058 Score=56.79 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.7
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++-+++|+|+.||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999853
No 306
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.84 E-value=0.00059 Score=54.71 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 307
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.83 E-value=0.00054 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.83 E-value=0.0005 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 309
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.81 E-value=0.00082 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999874
No 310
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.81 E-value=0.0063 Score=64.43 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=26.8
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
+++|+++.|.||+|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999999875443
No 311
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.81 E-value=0.0006 Score=52.66 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998754
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.80 E-value=0.00059 Score=52.74 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 313
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.80 E-value=0.00069 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 314
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.80 E-value=0.00077 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
No 315
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.80 E-value=0.00062 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 316
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.80 E-value=0.00066 Score=55.82 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999753
No 317
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.79 E-value=0.00062 Score=52.99 Aligned_cols=22 Identities=14% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 318
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.79 E-value=0.00059 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.1
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999985
No 319
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.78 E-value=0.0006 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 320
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.77 E-value=0.00065 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.624 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.77 E-value=0.00065 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 322
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.76 E-value=0.00067 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 323
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.76 E-value=0.00062 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.+-++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 324
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.75 E-value=0.00075 Score=57.14 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.++|+|++|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998643
No 325
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.75 E-value=0.00068 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.1
Q ss_pred CcEEEEECCCCchHHHHHHHHhCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 326
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.75 E-value=0.00045 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.5
Q ss_pred CcEEEEECCCCchHHHHHHHHhC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999985
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.75 E-value=0.00085 Score=52.87 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.5
Q ss_pred cEEEEECCCCchHHHHHHHHhC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~G 104 (266)
++++|+|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
No 328
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.75 E-value=0.00062 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 329
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.75 E-value=0.00068 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999864
No 330
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.74 E-value=0.0007 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.644 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.74 E-value=0.00075 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.9
Q ss_pred CcEEEEECCCCchHHHHHHHHhCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
..+++|+|+.||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999743
No 332
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.74 E-value=0.00088 Score=55.28 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987543
No 333
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.73 E-value=0.00071 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.0
Q ss_pred cEEEEECCCCchHHHHHHHHhC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~G 104 (266)
-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 334
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.72 E-value=0.00067 Score=53.29 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 335
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.72 E-value=0.0008 Score=53.66 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999998654
No 336
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.70 E-value=0.00086 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.7
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999853
No 337
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.69 E-value=0.00094 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 338
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.0008 Score=53.90 Aligned_cols=22 Identities=23% Similarity=0.705 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 339
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.69 E-value=0.00081 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.69 E-value=0.00092 Score=57.01 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 341
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.69 E-value=0.00082 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 342
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.68 E-value=0.00087 Score=56.75 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.6
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999763
No 343
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.67 E-value=0.00084 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999763
No 344
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.67 E-value=0.00083 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 345
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.67 E-value=0.00085 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999863
No 346
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.66 E-value=0.00086 Score=57.22 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 347
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.66 E-value=0.00075 Score=54.66 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 348
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.66 E-value=0.00069 Score=55.01 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=22.7
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999876543
No 349
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.65 E-value=0.00089 Score=51.83 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q 024529 84 RIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~G 104 (266)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999976
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.62 E-value=0.001 Score=55.23 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 351
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.62 E-value=0.001 Score=58.18 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+++|+|++|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 352
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.62 E-value=0.00094 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 353
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.62 E-value=0.00095 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 354
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.61 E-value=0.00097 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 355
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.60 E-value=0.00089 Score=52.46 Aligned_cols=22 Identities=14% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 356
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.001 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 357
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.59 E-value=0.00074 Score=55.40 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.8
Q ss_pred cEEEEECCCCchHHHHHHHHhCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
-.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 358
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.58 E-value=0.00052 Score=59.75 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=18.8
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999763
No 359
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.58 E-value=0.001 Score=57.56 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.2
Q ss_pred cEEEEECCCCchHHHHHHHHhC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~G 104 (266)
-+++|+|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 360
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.58 E-value=0.0022 Score=56.48 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=29.6
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
..++...+.+ .|.-++|+|+||+|||||...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4577877888 788999999999999999998886
No 361
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.58 E-value=0.0012 Score=52.43 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999998753
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.57 E-value=0.0012 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCchHHHHHHHHhC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
++-+++|+||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 363
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.56 E-value=0.0011 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 364
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.56 E-value=0.016 Score=62.17 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=74.9
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHH
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 158 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (266)
+++|+++.|.||+|+|||||...++.......+. +.|+.-+. ...... +
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~--------vlyis~E~------s~~~~~-----------------a 428 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--------CAFIDAEH------ALDPIY-----------------A 428 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCC--------EEEECTTS------CCCHHH-----------------H
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCe--------EEEEEcCC------CHHHHH-----------------H
Confidence 8899999999999999999988776543322222 22332211 111110 1
Q ss_pred HhcCCCc--ccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCC-H-------------HHH--HHHHHH--
Q 024529 159 GSFGVTG--NLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLD-L-------------DAV--EALIQG-- 216 (266)
Q Consensus 159 ~~~~l~~--~~~~~~~~~LSgGqkqRv~lAral~--~~p~lllLDEPt~~LD-~-------------~~~--~~l~~~-- 216 (266)
+.+|++. ..... ..+.. +-+.+++.++ .+|+++++|.-++-.. . ..+ ...+..
T Consensus 429 ~~lGvd~~~L~I~~---~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~ 503 (2050)
T 3cmu_A 429 RKLGVDIDNLLCSQ---PDTGE--QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 503 (2050)
T ss_dssp HHTTCCTTTCEEEC---CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHeEEeC---CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHH
Confidence 2233321 01111 12332 3456666664 5799999999887652 1 111 122233
Q ss_pred --HhhcCCEEEEEecCHH----------------HHHhhcCEEEEEeCC
Q 024529 217 --LVLFQGGILMVSHDEH----------------LISGSVEELWVVSEG 247 (266)
Q Consensus 217 --l~~~~~tiiivtHd~~----------------~~~~~~d~i~~l~~G 247 (266)
+++.+.+||+++|-.. .+..++|.++.|...
T Consensus 504 ~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~ 552 (2050)
T 3cmu_A 504 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 552 (2050)
T ss_dssp HHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred HHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEec
Confidence 3566789999988422 356678888887543
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.56 E-value=0.0011 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 366
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.55 E-value=0.0013 Score=56.21 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 367
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.55 E-value=0.0011 Score=56.97 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|++|+|||||++.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988753
No 368
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.54 E-value=0.001 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 369
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.53 E-value=0.001 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 370
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.53 E-value=0.0013 Score=57.66 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+++|+|+.|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999985
No 371
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.53 E-value=0.0012 Score=53.36 Aligned_cols=23 Identities=17% Similarity=0.613 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 372
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.53 E-value=0.0012 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 373
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.53 E-value=0.0012 Score=53.34 Aligned_cols=22 Identities=41% Similarity=0.880 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.52 E-value=0.0015 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998654
No 375
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.52 E-value=0.001 Score=59.94 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 376
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.51 E-value=0.0012 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.51 E-value=0.0016 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 378
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.51 E-value=0.0013 Score=55.76 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 379
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.50 E-value=0.0013 Score=52.77 Aligned_cols=23 Identities=17% Similarity=0.680 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.50 E-value=0.0015 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 382
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0012 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 383
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.49 E-value=0.0013 Score=56.56 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 384
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.49 E-value=0.0013 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 385
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 386
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.48 E-value=0.0013 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 387
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.48 E-value=0.0015 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 388
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.47 E-value=0.0015 Score=55.91 Aligned_cols=30 Identities=37% Similarity=0.599 Sum_probs=22.9
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCCCceE
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQPSSGT 112 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 112 (266)
-.++++|.+|+|||||++.|.|......|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999976544443
No 389
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0012 Score=52.85 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999873
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0015 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.7
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 391
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.46 E-value=0.0016 Score=54.03 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
+|-+++|.|+.||||||+++.|+..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999976553
No 392
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.45 E-value=0.0015 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 393
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.45 E-value=0.0016 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998544
No 394
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.45 E-value=0.0016 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999885
No 395
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0013 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.44 E-value=0.0015 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 397
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.44 E-value=0.0013 Score=53.25 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 398
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.44 E-value=0.0015 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.44 E-value=0.0016 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+|-+++|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999754
No 400
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.42 E-value=0.0013 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 401
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.42 E-value=0.0014 Score=55.13 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.3
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.+|-++.|.|+.||||||+.+.|+..+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998654
No 402
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.42 E-value=0.0014 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEECCCCchHHHHHHHHhC
Q 024529 84 RIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~G 104 (266)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 403
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.41 E-value=0.0015 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 404
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.41 E-value=0.0014 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999753
No 405
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0014 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 406
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.41 E-value=0.0016 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.6
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 407
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.40 E-value=0.0019 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 408
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.39 E-value=0.0016 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 409
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.38 E-value=0.0014 Score=57.40 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
.+..+.|.||+|+|||||++.|++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467999999999999999999986543
No 410
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0016 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 411
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.38 E-value=0.0019 Score=51.95 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.2
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 412
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.38 E-value=0.0014 Score=53.66 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.1
Q ss_pred cEEEEECCCCchHHHHHHHHhCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
-.++|+|+.|||||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 413
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.37 E-value=0.0019 Score=54.57 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
+|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999976543
No 414
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.0017 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.730 Sum_probs=20.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 415
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.37 E-value=0.0031 Score=62.75 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=22.8
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
..+.|+||+|+|||+|.+.|+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987644
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.36 E-value=0.0017 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.1
Q ss_pred cEEEEECCCCchHHHHHHHHhCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
=.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 417
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.36 E-value=0.0018 Score=55.91 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.1
Q ss_pred cEEEEECCCCchHHHHHHHHhC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~G 104 (266)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 418
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.35 E-value=0.0015 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 419
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.35 E-value=0.0017 Score=56.37 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 420
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.34 E-value=0.0019 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 421
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.34 E-value=0.0017 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.7
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 422
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.34 E-value=0.0019 Score=50.89 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999998754
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.34 E-value=0.0019 Score=57.53 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred cEEEEECCCCchHHHHHHHHhCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999998755
No 424
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.32 E-value=0.0019 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888764
No 425
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.32 E-value=0.0021 Score=53.33 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
+|-++.+.|++||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999986543
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.32 E-value=0.0024 Score=53.31 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.+-.+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998543
No 427
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.32 E-value=0.0016 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.5
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 428
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0017 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 429
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.30 E-value=0.0018 Score=60.11 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=30.1
Q ss_pred ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
+++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45555 6777899999999999999999999987543
No 430
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.29 E-value=0.0026 Score=51.75 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 431
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.29 E-value=0.0022 Score=58.62 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.5
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
-....++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999753
No 432
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.00064 Score=59.85 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEH 232 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~ 232 (266)
++.++++|| ...+++.....+.+.+.+.. ..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 667999999 78899988888888887653 24667776654
No 433
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.28 E-value=0.0013 Score=51.91 Aligned_cols=22 Identities=23% Similarity=0.653 Sum_probs=9.3
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 434
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.28 E-value=0.0019 Score=51.91 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.6
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999764
No 435
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0024 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.880 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999874
No 436
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.26 E-value=0.0044 Score=51.49 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHHhhcCEEEEEe
Q 024529 192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD----------EHLISGSVEELWVVS 245 (266)
Q Consensus 192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd----------~~~~~~~~d~i~~l~ 245 (266)
+.+++++||--- +|+... ++++.+...+..||+.-+| ...+..+||.|..|+
T Consensus 101 ~~dvViIDEaQF-~~~~~V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHH-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999876 777665 4455555567789998883 344556899998875
No 437
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.25 E-value=0.0022 Score=52.60 Aligned_cols=25 Identities=52% Similarity=0.666 Sum_probs=21.7
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998643
No 438
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.22 E-value=0.0023 Score=53.57 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.5
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
|-+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998655
No 439
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.22 E-value=0.0023 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.22 E-value=0.002 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 441
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.22 E-value=0.0026 Score=52.93 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=27.2
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 113 (266)
.+|.++.+.|+.||||||+.+.|+..+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999886654 3433
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.21 E-value=0.0035 Score=51.57 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=28.0
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
..++..-+.+ .|..+.|+||+|||||||...|+..
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456655555 5788999999999999999999864
No 443
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.20 E-value=0.00072 Score=67.00 Aligned_cols=33 Identities=39% Similarity=0.653 Sum_probs=29.3
Q ss_pred ceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 75 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 75 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.++.+.++..+.|+||+|+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366788999999999999999999999998753
No 444
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.19 E-value=0.0022 Score=55.23 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|..|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.19 E-value=0.0028 Score=53.06 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999986543
No 446
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.19 E-value=0.021 Score=61.45 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=24.6
Q ss_pred EEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 78 GIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
-+++|+.+.|.||.|+|||||...++-
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999999988854
No 447
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.18 E-value=0.0024 Score=54.54 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 448
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.0022 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 449
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.16 E-value=0.0028 Score=55.79 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=21.9
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 450
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.15 E-value=0.0027 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.5
Q ss_pred cEEEEECCCCchHHHHHHHHhCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
..++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
No 451
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.12 E-value=0.0013 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998643
No 452
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.12 E-value=0.00059 Score=57.97 Aligned_cols=32 Identities=41% Similarity=0.703 Sum_probs=25.2
Q ss_pred eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+.++.+..+.| +.|.||+|+|||||++.|+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34445555556 789999999999999999874
No 453
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.11 E-value=0.0036 Score=55.58 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=25.6
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 114 (266)
++.+++|+||.|||||||...|+.-+ .|+|.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l---~~eiI 69 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF---PLEVI 69 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS---CEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC---CCcEE
Confidence 45689999999999999999999765 35554
No 454
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.08 E-value=0.0025 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+++|+|+.|+|||||++-++.-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988653
No 455
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.07 E-value=0.0033 Score=52.82 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
...-+.|.||.|+|||||.+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999998743
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.05 E-value=0.002 Score=54.83 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467799999999999999999998765
No 457
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.05 E-value=0.002 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999653
No 458
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.04 E-value=0.0028 Score=51.34 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 459
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0047 Score=51.32 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.2
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHh
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIA 103 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~ 103 (266)
+++|+++.|.|+.|+|||||.--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999976543
No 460
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.03 E-value=0.0013 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=4.4
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 461
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0033 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 462
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.00 E-value=0.0033 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 463
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.99 E-value=0.003 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred cEEEEECCCCchHHHHHHHHhC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~G 104 (266)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999988875
No 464
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.97 E-value=0.004 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.8
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
|.+++|=|+.||||||+.+.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987653
No 465
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.91 E-value=0.0043 Score=54.48 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.7
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 466
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.90 E-value=0.0044 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.4
Q ss_pred EeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 79 IDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 79 i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
+.+..++.|+||.||||||..+.|+-
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999974
No 467
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.88 E-value=0.005 Score=47.43 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
..+.-+.|.||.|+|||+|.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456689999999999999999987643
No 468
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.88 E-value=0.0089 Score=50.23 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=41.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHHhhcCEEEEEe
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD----------EHLISGSVEELWVVS 245 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd----------~~~~~~~~d~i~~l~ 245 (266)
.+.+++++||---..| ..++.+.+.+.+..||+.-+| ...+..+||.|..|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988765 677788888878899999999 233445899998874
No 469
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.87 E-value=0.0049 Score=49.80 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=33.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH----------HHHhhcCEEEEEe
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH----------LISGSVEELWVVS 245 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~----------~~~~~~d~i~~l~ 245 (266)
.+++++++||--. +++...+. +..+.+.+..|+++.++.+ .+..+||.+..|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~~-l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFEV-VKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHHH-HHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHHHHHH-HHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999754 65553333 3434444677888777544 1234699988775
No 470
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.86 E-value=0.0037 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 471
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.76 E-value=0.005 Score=49.66 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=28.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q 024529 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEH 232 (266)
Q Consensus 191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~ 232 (266)
.++.++++||. ..++......+...+.... ..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 36889999995 5577777777877776643 34677776553
No 472
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.71 E-value=0.0059 Score=50.35 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.6
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
++.|+||.||||+|..+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
No 473
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.63 E-value=0.0067 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.5
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+-.++|+|+.|+|||||++.+.+-.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987763
No 474
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.62 E-value=0.0027 Score=58.41 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.4
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
.+++|+|++|+||||+...|++.+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987653
No 475
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.62 E-value=0.0099 Score=47.81 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=26.0
Q ss_pred cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
..++..-+.+ .|.-+.|.|++|+|||||...+..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3445544554 578899999999999999887754
No 476
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.60 E-value=0.0067 Score=52.34 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999887654
No 477
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.57 E-value=0.0079 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.9
Q ss_pred cEEEEECCCCchHHHHHHHHhCCCCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGELQPS 109 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~ 109 (266)
-.++|+|.+|+|||||++.|.|.....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEecCCCchHHHHHHHhcCceee
Confidence 369999999999999999999975433
No 478
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.54 E-value=0.0065 Score=55.23 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.+++|.||+|||||||...|+-.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 47899999999999999999754
No 479
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.53 E-value=0.0064 Score=55.21 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE---eCCCCCCCHHHHHHHHHHHhhcCCEEEEEe
Q 024529 153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL---DEPSNHLDLDAVEALIQGLVLFQGGILMVS 228 (266)
Q Consensus 153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL---DEPt~~LD~~~~~~l~~~l~~~~~tiiivt 228 (266)
.+.++++.++... +...+|..+...+.-...+...|-++++ |.+ +......+.+.+...+..+|.+|
T Consensus 181 ~~~~~l~~l~~~~-----~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~~~~l~~l~~~~~~~~~~vv~iS 250 (397)
T 1wxq_A 181 DVWEAMHKLNLPE-----DPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA----SDEQIKRLVREEEKRGYIVIPTS 250 (397)
T ss_dssp HHHHHHHHTTCCS-----CGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----CHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhccCC-----ccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc----chHHHHHHHHHHhhcCCcEEEEe
Confidence 3445555555432 2347888988887766666678988887 544 12333444444433344566555
No 480
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.50 E-value=0.0042 Score=50.89 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCCEEEEeCCCC-----CCCHHHHHHHHHHHhh
Q 024529 181 SRVAFAKITFKKPHIILLDEPSN-----HLDLDAVEALIQGLVL 219 (266)
Q Consensus 181 qRv~lAral~~~p~lllLDEPt~-----~LD~~~~~~l~~~l~~ 219 (266)
-.-.|++.+..+|.+.+.++|+. .+|+.....+...+..
T Consensus 165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
T 3gj0_A 165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEV 208 (221)
T ss_dssp HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhh
Confidence 34467788888888888877766 5677666666655543
No 481
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.49 E-value=0.0059 Score=55.97 Aligned_cols=22 Identities=55% Similarity=0.809 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 482
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.47 E-value=0.0024 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.0
Q ss_pred cEEEEECCCCchHHHHHHHHhCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
=.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 36899999999999999888753
No 483
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.48 E-value=0.0037 Score=57.66 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=27.4
Q ss_pred eeceEEEeCCcE--EEEECCCCchHHHHHHHHhCCCCC
Q 024529 73 KNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQP 108 (266)
Q Consensus 73 ~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p 108 (266)
+.+.-.+..|.. +.|.||.|+|||||.++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 334444455554 899999999999999999987644
No 484
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.45 E-value=0.0073 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+..-+.|.||.|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456889999999999999999874
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.44 E-value=0.009 Score=52.25 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=22.4
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 486
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.44 E-value=0.0069 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=21.9
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.-+++|+|+.|+|||||++.|++.+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998654
No 487
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.41 E-value=0.0091 Score=52.75 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=24.9
Q ss_pred EEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529 77 FGIDLDSRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 104 (266)
--+.+|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578889999999999999999999875
No 488
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.38 E-value=0.0095 Score=52.33 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678999999999999999999754
No 489
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.37 E-value=0.0015 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 490
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.32 E-value=0.009 Score=51.27 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=21.7
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+.-+.|.||.|+|||||.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998765
No 491
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.31 E-value=0.0048 Score=55.88 Aligned_cols=32 Identities=41% Similarity=0.422 Sum_probs=28.1
Q ss_pred eceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
|.=+.+.+|+..+|+|+.|+|||||+..|+..
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 45567899999999999999999999988764
No 492
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.30 E-value=0.0059 Score=54.34 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEEECCCCchHHHHHHHHhCCC
Q 024529 84 RIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 84 ~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
No 493
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.27 E-value=0.0089 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.9
Q ss_pred cEEEEECCCCchHHHHHHHHhCCC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
..+.|.||.|+|||+|.+.|+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457888999999999999998754
No 494
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.26 E-value=0.0094 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=21.7
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+.-+.|.||+|+||||+.++|+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999765
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.25 E-value=0.0098 Score=52.61 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGELQ 107 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 107 (266)
.+|..+.|.||.|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999997654
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.22 E-value=0.01 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=22.1
Q ss_pred CcEEEEECCCCchHHHHHHHHhCCC
Q 024529 82 DSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 82 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5589999999999999999998654
No 497
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.22 E-value=0.011 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.7
Q ss_pred cEEEEECCCCchHHHHHHHHhC
Q 024529 83 SRIAMVGPNGIGKSTILKLIAG 104 (266)
Q Consensus 83 e~~~l~G~nGsGKSTLl~~l~G 104 (266)
-..||+|+.||||||+.+.|+-
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 498
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.20 E-value=0.012 Score=51.58 Aligned_cols=25 Identities=44% Similarity=0.593 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCchHHHHHHHHhCC
Q 024529 81 LDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
+..-+.|.||.|+|||||.+.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999999999999875
No 499
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.20 E-value=0.011 Score=52.65 Aligned_cols=33 Identities=21% Similarity=0.486 Sum_probs=26.6
Q ss_pred eeceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529 73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105 (266)
Q Consensus 73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 105 (266)
..+.++++---.++|+|..++|||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345566665556999999999999999999874
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=52.53 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529 80 DLDSRIAMVGPNGIGKSTILKLIAGEL 106 (266)
Q Consensus 80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 106 (266)
.+..-+.|.||.|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999998754
Done!