BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024531
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/235 (80%), Positives = 217/235 (92%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +I
Sbjct: 97 LVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
Query: 61 GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
GFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 157 GFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 216
Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
L+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C++VL E+E N KALFRRGKA+AE
Sbjct: 217 LYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE 276
Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 235
LGQ D+AR+DF KA K+AP+DK+I RELR LAE EKA+Y+KQKE+YKGIF + E
Sbjct: 277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 79/84 (94%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +I
Sbjct: 97 LVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
Query: 61 GFDETKEGKARSDMTVEERIGAAD 84
GFDETKEGKARSDMTVEERIGAAD
Sbjct: 157 GFDETKEGKARSDMTVEERIGAAD 180
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 6/219 (2%)
Query: 12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
GL + M+ GEH+++++ +G G F + P A+L YE+ L F++ KE
Sbjct: 80 GLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-QIPPNAELKYELHLKSFEKAKES--- 135
Query: 72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
+M EE++ + K G FKE K ++A+ QY+ ++++ ++ + A A
Sbjct: 136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQA 193
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
++ HLN+A C LKL+ + AI C+ L D NN K LFRRG+A + + AR DF
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADF 253
Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
K + P +K+ +L + + + ++K++Y +F
Sbjct: 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 6/219 (2%)
Query: 12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
GL + + GEH+++++ +G G F + P A+L YE+ L F++ KE
Sbjct: 80 GLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF-QIPPNAELKYELHLKSFEKAKES--- 135
Query: 72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
+ EE++ + K G FKE K ++A+ QY+ ++++ ++ + A A
Sbjct: 136 WEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQA 193
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
++ HLN+A C LKL+ + AI C+ L D NN K L RRG+A + + AR DF
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253
Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
K + P +K+ +L + + + ++K++Y +F
Sbjct: 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 6/219 (2%)
Query: 12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
G+ + M+ E +L++G G+G+ G F + P A+L+YEV L F++ KE
Sbjct: 201 GIDKALEKMQREEQCILYLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKES--- 256
Query: 72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
+M +E++ A K G FK K +A+ QY ++++ + + L K + +
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASES 314
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
LN+A C LKL+ Y +A+ C LG D N K L+RRG+A+ + + ++A+ DF
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374
Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
K + P++K+ ++ + + K ++ + IY +F
Sbjct: 375 EKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
IGV++MK GE L E YG G S P + A L +E+ L+ F
Sbjct: 92 IGVATMKRGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 137
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Query: 12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
G+ + M+ E +LH+G G+G+ G F + P A+L+YEV L F++ KE
Sbjct: 201 GIDKALEKMQREEQCILHLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKES--- 256
Query: 72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
+M +E++ A K G FK K +A+ QY ++++ + + L K + +
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLSEKESKASES 314
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
LN+A C LKL+ Y +A+ C LG D N K L+RRG+A+ + + ++A+ DF
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374
Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
K + P++K+ ++ + + K ++ + Y +F
Sbjct: 375 EKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 413
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
IGV++MK GE L E YG G S P + A L +EV L+ F
Sbjct: 92 IGVATMKKGEICHLLCKPEYAYGATG--SLPKIPSNATLFFEVELLDF 137
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 69 KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLFG 123
K+ D T EE++ +A K +GN FK+ ++ EA+ +Y+ A+ + DD + L
Sbjct: 24 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--LLD 81
Query: 124 KYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 183
K +++ ++ C+LN+A C K K Y +AI S VL D+NNVKAL++ G A G
Sbjct: 82 KKKNIEIS----CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137
Query: 184 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 241
+ A+E+ KA P + I L K KK K + G+F P ++KKN
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 195
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 74 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 133
MT EE+ A +GN L++E ++EA +Y AIA + + M + G + L +
Sbjct: 5 MTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQ 64
Query: 134 -NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
P LN C L ++ Y E + CS +L + ++NVKA F+RGKA A + A+ DF
Sbjct: 65 ITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFA 124
Query: 193 KAGKFAPE-DKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231
K + P ++REL+ L + ++ K ++GIF
Sbjct: 125 KVLELDPALAPVVSRELQALEARIRQKDEEDKARFRGIFS 164
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 90 GNALFKEEKLEEAMQQYEMAIAYM-GDDFMFQLF--GKYRDMALAVKNPCHLNMAACLLK 146
GN FK + E A+++Y + Y+ G + K + +AL+ C LN+ AC LK
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS----CVLNIGACKLK 285
Query: 147 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206
+ ++ A+ C L D +N KAL+RR + L + D A D KA + APEDK+I
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 207 ELRLLAEHEKAVYKKQKEIYKGIF 230
EL + + KA K+K Y +F
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYAKMF 369
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK-NP 135
EE+ A +GN L++E ++EA +Y AIA + + M + G + L + P
Sbjct: 2 EEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITP 61
Query: 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 195
LN C L ++ Y E + CS +L + ++NVKA F+RGKA A + A+ DF K
Sbjct: 62 LLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVL 121
Query: 196 KFAPE-DKSIARELRLL 211
+ P ++REL+ L
Sbjct: 122 ELDPALAPVVSRELQAL 138
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKN-PCHLNMAACLLKLK 148
GN LF ++ +EA+ Y A+ + + + G+ + L KN P + NM+ C L +
Sbjct: 18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG 77
Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS-IARE 207
EA S VL +E N KALFRR KAR + D A ED + P S +ARE
Sbjct: 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE 137
Query: 208 LRLLAEHEKAVYKKQKEIYKGIFGP 232
++++ E + Y +F P
Sbjct: 138 MKIVTERRAEKKADSRVTYSKMFQP 162
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK 146
+ +GN LFK A+ Y A+ L +D A+ H N AAC LK
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALG---------LDATPQDQAV-----LHRNRAACHLK 77
Query: 147 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206
L+ Y++A + S + +D +VKAL+RR +A +LG+ D A D + P++K
Sbjct: 78 LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137
Query: 207 ELRLLA 212
LR ++
Sbjct: 138 ALRNIS 143
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKN-PCHLNMAACLLKLK 148
GNA +K+ ++A++ Y+ A+ L N N+ K
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALE------------------LDPNNASAWYNLGNAYYKQG 57
Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 208
Y++AI L D NN KA +RRG A + G A ED+ KA + P + + L
Sbjct: 58 DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 141
+A K GN LF K EA Y AI R+ +AV + N A
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--------------RNPLVAVY---YTNRA 50
Query: 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
C LK+++ E+A+ C L D +VKA F G+ + E+ D A + +A A E
Sbjct: 51 LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110
Query: 202 K 202
+
Sbjct: 111 R 111
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 141
+A K GN LF K EA Y AI R+ +AV + N A
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--------------RNPLVAVY---YTNRA 45
Query: 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
C LK+++ E+A+ C L D +VKA F G+ + E+ D A + +A A E
Sbjct: 46 LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105
Query: 202 K 202
+
Sbjct: 106 R 106
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV++M GE AL + ++L YG+ G P + P A LV+EV L+
Sbjct: 86 GVATMTLGEKALFTIPYQLAYGERG--YPPVIPPKATLVFEVELL 128
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
A+ K N FK + E A++ Y AI + ++ Y + +LA
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY-----YGNRSLA----------- 49
Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
L+ + Y A+G + + D+ +K +RR + LG+ AA D+ K P DK
Sbjct: 50 -YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 10 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 67
+ GL V +MK GE AL+ + E YG S V P + ++YEV L+ F + KE
Sbjct: 317 IEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKE 374
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 10 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 67
+ G G+ +MK GE+AL + EL YG+ G S P + A L ++V L+ + ++
Sbjct: 83 IKGWDQGIKTMKKGENALFTIPPELAYGESG--SPPTIPANATLQFDVELLSWTSVRD 138
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 13 LAIGVSSMKAGEHALLHVGWELGYGK-------EGSFSFPNVSPMADL 53
LA V +MK GE LL V + G+G+ EG PN S + DL
Sbjct: 198 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDL 245
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 10 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 67
+ G G+ +MK GE+AL + EL YG+ G S P + A L ++V L+ + ++
Sbjct: 67 IKGWDQGIKTMKKGENALFTIPPELAYGESG--SPPTIPANATLQFDVELLSWTSVRD 122
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 10 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
+ GL V +MK GE AL+ + E YG S V P + ++YEV L+ F
Sbjct: 301 IEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF 353
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 13 LAIGVSSMKAGEHALLHVGWELGYGK-------EGSFSFPNVSPMADL 53
LA V +MK GE LL V + G+G+ EG PN S + DL
Sbjct: 182 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDL 229
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 19/120 (15%)
Query: 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP-CHLNMAACLLKLK 148
GNA +K+ +EA++ Y+ A + L N N+ K
Sbjct: 16 GNAYYKQGDYDEAIEYYQKA------------------LELDPNNAEAWYNLGNAYYKQG 57
Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 208
Y+EAI L D NN +A + G A + G D A E + KA + P + + L
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197
N+ K Y+EAI L D NN +A + G A + G D A E + KA +
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 198 APED 201
P +
Sbjct: 73 DPNN 76
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR-------AELGQTDAAR 188
+ N AA L KL + EAI C+ + +D N V+A R+ A+ + L DAAR
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 99
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDM 74
I +++MK GE + E YG G S P + P A LV+EV L F D+
Sbjct: 112 IAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF-------KGEDL 162
Query: 75 TVEERIGAADRRKMDGNALFKEEK---LEEAMQQY 106
T EE G R + G K + +E A++ Y
Sbjct: 163 TEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGY 197
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
I V++MK GE + E YG G S P + P A LV+EV L F
Sbjct: 91 IAVATMKVGELCRITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 136
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 74 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 133
++ +R A + K GN F + EA++ Y+ AI ++ +F
Sbjct: 12 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF-------------- 57
Query: 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDA 186
+ N++AC + E+ I + L ++ KAL RR A LG TDA
Sbjct: 58 ---YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 108
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 74 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 133
++ +R A + K GN F + EA++ Y+ AI ++ +F
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF-------------- 61
Query: 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDA 186
+ N++AC + E+ I + L ++ KAL RR A LG TDA
Sbjct: 62 ---YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR-------AELGQTDAAR 188
+ N AA L KL + EAI C+ + +D N V+A R+ A+ + L DAAR
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
A+ K N FK + E A++ Y AI + ++ +G N +
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--YG---------------NRSL 55
Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
L+ + Y A+G + + D+ +K +RR + LG+ AA D+ K P DK
Sbjct: 56 AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
I +++MK GE + E YG G S P + P A LV+EV L F
Sbjct: 92 IAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 137
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
I +++MK GE + E YG G S P + P A LV+EV L F
Sbjct: 96 IAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEF 141
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 195
CH C K ++ EAI CS VL + +NV AL R +A D A +D+ A
Sbjct: 302 CH-----CFSKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQ 356
Query: 196 KFAPEDKSIAREL----RLLAEHEKAVYKK 221
+ D+ I L RLL + +K Y K
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYK 386
>pdb|2IX0|A Chain A, Rnase Ii
Length = 663
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 34/192 (17%)
Query: 67 EGKARSDMTVEE--RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK 124
EG R D+T + I +A MD +ALF + ++ +Q I + D + G
Sbjct: 204 EGLVREDLTALDFVTIDSASTEDMD-DALFAKALPDDKLQ----LIVAIADPTAWIAEGS 258
Query: 125 YRDMALAVKN-------------PCHLNMAACLLKLKRYEEAIGQCSLVLGED---ENNV 168
D A ++ P L+ C L+ + C + L D E+N+
Sbjct: 259 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLA-CRMTLSADGTIEDNI 317
Query: 169 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE---------HEKAVY 219
+ +++A+L D + G + PE ++IA ++RLLA+ H A+
Sbjct: 318 EFFAATIESKAKL-VYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALV 376
Query: 220 KKQKEIYKGIFG 231
K + Y+ I G
Sbjct: 377 FKDRPDYRFILG 388
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
IGV++MK GE L E YG G S P + A L +E+ L+ F
Sbjct: 96 IGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
IGV++MK GE L E YG G S P + A L +E+ L+ F
Sbjct: 96 IGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 195
CH C K ++ EAI CS VL + +NV AL R +A D A +D+ A
Sbjct: 302 CH-----CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
Query: 196 KFAPEDKSIAREL----RLLAEHEKAVYKK 221
+ D+ I L RLL + +K Y K
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYK 386
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
IGV++MK GE L E YG G S P + A L +E+ L+ F
Sbjct: 96 IGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
IGV++MK GE L E YG G S P + A L +E+ L+ F
Sbjct: 80 IGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 15 IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
IGV++MK GE L E YG G S P + A L +E+ L+ F
Sbjct: 80 IGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197
N+ K Y+EAI L D NN +A + G A + G D A E + KA +
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 198 APEDKSIAREL 208
P + + L
Sbjct: 73 DPNNAEAKQNL 83
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
GNA +K+ +EA++ Y+ A+ Y + A A N+ K
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALE------------LYPNNAEAW-----YNLGNAYYKQGD 58
Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 208
Y+EAI L NN +A + G A + G D A E + KA + P + + L
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL 117
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197
N+ K Y+EAI L NN +A + G A + G D A E + KA +
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 198 APED 201
P +
Sbjct: 73 YPNN 76
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
+D + + A+ K N FK + E A++ Y AI + ++ +G
Sbjct: 10 TDPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--YG-------- 59
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
N + L+ + Y A+ + + D+ +K +RR + LG+ AA D+
Sbjct: 60 -------NRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDY 112
Query: 192 LKAGKFAPEDK 202
K P DK
Sbjct: 113 ETVVKVKPHDK 123
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 17/134 (12%)
Query: 77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 136
EE A+R K +GN K E E A+ Y AI + ++
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY----------------- 48
Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
N AA KL Y A+ C + D KA R G A + L + A + KA +
Sbjct: 49 FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108
Query: 197 FAPEDKSIARELRL 210
P++++ L++
Sbjct: 109 LDPDNETYKSNLKI 122
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + GL GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 49 MLGKQEV-IRGLEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
A K GN FK+ AM+ Y A+ RD A+ + N AA
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK--------------RDPENAI---LYSNRAA 55
Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
CL KL ++ A+ C + D +K R+ + + A+ + A + P ++
Sbjct: 56 CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Query: 203 SIARE 207
ARE
Sbjct: 116 E-ARE 119
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant
Length = 664
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 135 PCHLNMAACLLKLKRYEEAIGQCSLVLGED---ENNVKALFRRGKARAELGQTDAAREDF 191
P L+ C L+ + C + L D E+N++ +++A+L D +
Sbjct: 283 PRELSDDLCSLRANEVRPVLA-CRMTLSADGTIEDNIEFFAATIESKAKL-VYDQVSDWL 340
Query: 192 LKAGKFAPEDKSIARELRLLAE---------HEKAVYKKQKEIYKGIFG 231
G + PE ++IA ++RLLA+ H A+ K + Y+ I G
Sbjct: 341 ENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG 389
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G A GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 48 FMLGKQEV-IRGWAEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 19 SMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63
+M GE A L + E YGK+G + P A L +EV L+ D
Sbjct: 73 TMSKGEKARLEIEPEWAYGKKGQPDA-KIPPNAKLTFEVELVDID 116
>pdb|1OX3|A Chain A, Crystal Structure Of Mini-Fibritin
Length = 109
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 17 VSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTV 76
+S +K GE L G + YG EGS + P VS + ++ IG +T A SD+
Sbjct: 22 ISWIKNGEEIL---GADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKT 78
Query: 77 EERIGAADRRKMDGNALFKEE 97
+ G DG A +++
Sbjct: 79 IQEAGYIPEAPRDGQAYVRKD 99
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV MK G L + +LGYG G+ + P A LV+EV L+
Sbjct: 165 GVQGMKVGGVRRLTIPPQLGYGARGAAGV--IPPNATLVFEVELL 207
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV MK G L + +LGYG G+ + P A LV+EV L+
Sbjct: 165 GVQGMKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV MK G L + +LGYG G+ + P A LV+EV L+
Sbjct: 165 GVQGMKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV MK G L + +LGYG G+ + P A LV+EV L+
Sbjct: 165 GVQGMKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 195
CH C K ++ EAI CS VL + +NV AL R +A D A +D+ A
Sbjct: 279 CH-----CFSKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQ 333
Query: 196 KFAPEDKSIAREL----RLLAEHEK 216
+ D+ I L RLL + +K
Sbjct: 334 EHNENDQQIREGLEKAQRLLKQSQK 358
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV MK G L + +LGYG G+ + P A LV+EV L+
Sbjct: 165 GVQGMKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 207
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 19 SMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63
+M GE A L + E YGK+G + P L++EV L+ D
Sbjct: 76 TMSKGEKARLEIEPEWAYGKKGQPDA-KIPPNTKLIFEVELVDID 119
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVL 59
G +GV++M GE A + + GYG G S P + A L++EV L
Sbjct: 72 GWDLGVATMTKGEVAEFTIRSDYGYGDAG--SPPKIPGGATLIFEVEL 117
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 48 FMLGKQEV-IRGFEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 10 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 64
+ G I VSSM+ E L+ + GYG EG S P S L++E+ L+ F E
Sbjct: 75 IKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFRE 127
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 10 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 64
+ G I VSSM+ E L+ + GYG EG S P S L++E+ L+ F E
Sbjct: 75 IKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSV---LLFEIELLSFRE 127
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
VLGK++ + G GV+ M G+ A L + + YG G + P A L+++V L+
Sbjct: 48 FVLGKQEV-IRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPNATLIFDVELL 104
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii
pdb|2ID0|B Chain B, Escherichia Coli Rnase Ii
pdb|2ID0|C Chain C, Escherichia Coli Rnase Ii
pdb|2ID0|D Chain D, Escherichia Coli Rnase Ii
Length = 644
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 135 PCHLNMAACLLKLKRYEEAIGQCSLVLGED---ENNVKALFRRGKARAELGQTDAAREDF 191
P L+ C L+ + C L D E+N++ +++A+L + D+
Sbjct: 263 PRELSDDLCSLRANEVRPVLA-CRXTLSADGTIEDNIEFFAATIESKAKLVYDQVS--DW 319
Query: 192 LK-AGKFAPEDKSIARELRLLAE---------HEKAVYKKQKEIYKGIFG 231
L+ G + PE ++IA ++RLLA+ H A+ K + Y+ I G
Sbjct: 320 LENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILG 369
>pdb|2IBL|A Chain A, Crystal Structure Of A Helper Molecule (Ht-Mf-Thromb)
Based On Mini- Fibritin (Mf) Crystal Structure
(Pdb:1ox3)
Length = 130
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 17 VSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTV 76
+S +K GE L G + YG EGS + P VS + ++ IG +T A SD+
Sbjct: 33 ISWIKNGEEIL---GADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKT 89
Query: 77 EERIGAADRRKMDGNALFKEE 97
+ G DG A +++
Sbjct: 90 IQEAGYIPEAPRDGQAYVRKD 110
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 135 PCHLNMAACL----LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 190
P ++ +A L +++++Y+ A+ V + N FR G A LG+ D A +
Sbjct: 73 PDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDS 132
Query: 191 FLKAGKFAPED----KSIARELRLLAEHEKAV--YKKQKEI 225
F A P + ++IA + HE+A+ +KK E+
Sbjct: 133 FKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANEL 173
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 48 FMLGKQEV-IRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 48 FMLGKQEV-IRGWQEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV MK G L + +LGYG G+ + P A LV+EV L+
Sbjct: 73 GVQGMKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 115
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 135 PCHLNMAACL----LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 190
P ++ +A L +++++Y+ A+ V + N FR G A LG+ D A +
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDS 132
Query: 191 FLKAGKFAPED----KSIARELRLLAEHEKAV--YKKQKEIYKG 228
F A P + ++IA + HE+A+ +KK E+ +G
Sbjct: 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 135 PCHLNMAACL----LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 190
P ++ +A L +++++Y+ A+ V + N FR G A LG+ D A +
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132
Query: 191 FLKAGKFAPED----KSIARELRLLAEHEKAV--YKKQKEIYKG 228
F A P + ++IA + HE+A+ +KK E+ +G
Sbjct: 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 48 FMLGKQEV-IRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV MK G L + +LGYG G+ + P A LV+EV L+
Sbjct: 69 GVQGMKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 111
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 16 GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
GV MK G L + +LGYG G+ + P A LV+EV L+
Sbjct: 89 GVQGMKVGGVRRLTIPPQLGYGARGAGGV--IPPNATLVFEVELL 131
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 135 PCHLNMAACL----LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 190
P ++ +A L +++++Y+ A+ V + N FR G A LG+ D A +
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132
Query: 191 FLKAGKFAPED----KSIARELRLLAEHEKAV--YKKQKEIYKG 228
F A P + ++IA + HE+A+ +KK E+ +G
Sbjct: 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 49 MLGKQEV-IRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 51 MLGKQEV-IRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 106
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 49 MLGKQEV-IRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 48 FMLGKQEV-IRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI--IPPHATLVFDVELL 104
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 19/111 (17%)
Query: 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP-CHLNMAACLLKLK 148
GNA +K+ +EA++ Y+ A + L ++ N+ K
Sbjct: 8 GNAYYKQGDYDEAIEYYQKA------------------LELDPRSAEAWYNLGNAYYKQG 49
Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 199
Y+EAI L D + +A + G A + G D A E + KA + P
Sbjct: 50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
+LGK++ + G GV+ M G+ A L + + YG G + P A LV++V L+
Sbjct: 48 FMLGKQEV-IRGWEEGVAQMSVGQRAKLTISPDYAYGATGVPGI--IPPHATLVFDVELL 104
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
++ AI VL D NNV+ L + GK ++G + A E KF D + A
Sbjct: 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL---KKFVVLDTTSAEAYY 77
Query: 210 LLAEHEKAVYKKQKEI 225
+L + +KQ I
Sbjct: 78 ILGSANFMIDEKQAAI 93
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
M +G + + LA S M EH +H GW+L EG +F N ++ L+
Sbjct: 130 MYVGSTSVQTSRLA--KSKMLTPEHVFIHPGWKLLAVPEGRTNFDN---------DIALV 178
Query: 61 GF-DETKEGKARSDMTVEERIGAADRRKMDGN 91
D K G S + + ++D MDG+
Sbjct: 179 RLKDPVKMGPTVSPICLPGT--SSDYNLMDGD 208
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 10 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSF-SFPNVSPMADLVYEVVLIGFDE 64
+ G I V+SM E + + + GYG+EG S P S L++E+ LI F E
Sbjct: 74 IKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSV---LIFEIELISFRE 126
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 10 MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN-VSPMADLVYEVVLI 60
+ G +G+ + GE A L + YG G FP + P + LV++V L+
Sbjct: 62 IKGWDVGIPKLSVGEKARLTIPGPYAYGPRG---FPGLIPPNSTLVFDVELL 110
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
D NN + RG+ L D A +DF KA + PE+
Sbjct: 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,725,744
Number of Sequences: 62578
Number of extensions: 326440
Number of successful extensions: 876
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 118
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)