Query 024531
Match_columns 266
No_of_seqs 237 out of 3216
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 3.9E-44 8.4E-49 302.9 24.7 256 3-264 131-390 (397)
2 KOG0545 Aryl-hydrocarbon recep 99.9 1.3E-26 2.9E-31 183.8 13.9 230 1-231 61-328 (329)
3 KOG0553 TPR repeat-containing 99.9 1.1E-21 2.4E-26 160.7 13.6 127 75-218 73-199 (304)
4 KOG4234 TPR repeat-containing 99.8 4.7E-19 1E-23 137.2 15.1 134 78-223 90-223 (271)
5 KOG0550 Molecular chaperone (D 99.8 9.1E-19 2E-23 148.6 11.5 160 76-252 242-404 (486)
6 KOG0548 Molecular co-chaperone 99.7 5.1E-17 1.1E-21 142.0 13.1 119 80-215 355-473 (539)
7 PRK15359 type III secretion sy 99.7 1.2E-15 2.5E-20 116.6 15.3 114 85-215 26-139 (144)
8 KOG0547 Translocase of outer m 99.7 6E-16 1.3E-20 134.0 14.9 129 72-217 104-233 (606)
9 PLN03088 SGT1, suppressor of 99.7 1.1E-15 2.4E-20 133.6 15.1 118 84-218 3-120 (356)
10 KOG0624 dsRNA-activated protei 99.7 4.1E-16 8.8E-21 130.0 10.6 163 78-256 264-429 (504)
11 KOG4648 Uncharacterized conser 99.7 9.2E-16 2E-20 127.9 10.9 125 72-213 86-210 (536)
12 TIGR00990 3a0801s09 mitochondr 99.6 2.8E-14 6.1E-19 133.8 18.7 136 45-202 93-228 (615)
13 TIGR02552 LcrH_SycD type III s 99.6 7.9E-14 1.7E-18 105.1 14.9 117 80-213 14-130 (135)
14 KOG0548 Molecular co-chaperone 99.6 1.3E-14 2.9E-19 127.1 11.6 113 83-212 2-114 (539)
15 PRK15363 pathogenicity island 99.6 1.2E-13 2.6E-18 104.7 15.2 106 80-202 32-137 (157)
16 KOG4626 O-linked N-acetylgluco 99.6 9.5E-15 2.1E-19 129.9 10.6 143 79-239 248-390 (966)
17 COG3063 PilF Tfp pilus assembl 99.5 3.7E-13 8E-18 106.9 14.5 156 79-253 31-222 (250)
18 PRK11189 lipoprotein NlpI; Pro 99.5 4.8E-13 1E-17 114.4 15.9 106 81-203 62-167 (296)
19 KOG4626 O-linked N-acetylgluco 99.5 2.1E-13 4.6E-18 121.5 12.8 159 80-239 317-492 (966)
20 KOG0551 Hsp90 co-chaperone CNS 99.5 8.4E-13 1.8E-17 109.8 13.8 109 81-202 79-187 (390)
21 TIGR00990 3a0801s09 mitochondr 99.5 8.8E-13 1.9E-17 123.7 15.8 156 81-237 329-501 (615)
22 PRK10370 formate-dependent nit 99.5 9E-13 1.9E-17 106.0 12.9 114 80-210 70-186 (198)
23 PRK15359 type III secretion sy 99.5 1.2E-12 2.7E-17 99.9 12.4 114 103-237 13-126 (144)
24 KOG0376 Serine-threonine phosp 99.5 1.5E-13 3.2E-18 119.6 8.0 121 82-219 3-123 (476)
25 TIGR02795 tol_pal_ybgF tol-pal 99.4 2.8E-12 6.1E-17 94.0 12.6 113 83-209 2-117 (119)
26 KOG1126 DNA-binding cell divis 99.4 8.5E-13 1.8E-17 118.4 11.1 136 81-234 419-554 (638)
27 KOG4642 Chaperone-dependent E3 99.4 1E-12 2.2E-17 104.8 8.8 115 81-212 8-127 (284)
28 PF13414 TPR_11: TPR repeat; P 99.4 1.3E-12 2.7E-17 86.8 6.7 64 136-199 5-69 (69)
29 PRK09782 bacteriophage N4 rece 99.4 2.1E-11 4.6E-16 118.4 17.6 103 136-239 611-713 (987)
30 PRK09782 bacteriophage N4 rece 99.4 1.8E-11 3.8E-16 119.0 16.4 131 83-231 609-739 (987)
31 KOG1155 Anaphase-promoting com 99.4 3E-11 6.5E-16 104.6 15.6 132 83-232 364-495 (559)
32 KOG0624 dsRNA-activated protei 99.4 1.2E-11 2.6E-16 103.6 12.3 115 80-211 35-149 (504)
33 PRK10370 formate-dependent nit 99.4 1.8E-11 4E-16 98.4 13.1 122 96-235 52-176 (198)
34 TIGR03302 OM_YfiO outer membra 99.3 7.4E-11 1.6E-15 97.4 15.4 115 81-209 31-156 (235)
35 KOG1126 DNA-binding cell divis 99.3 7.3E-12 1.6E-16 112.5 9.8 150 71-238 477-626 (638)
36 KOG1155 Anaphase-promoting com 99.3 4.6E-11 9.9E-16 103.5 14.2 124 90-231 337-460 (559)
37 PRK15179 Vi polysaccharide bio 99.3 3E-11 6.6E-16 113.3 14.2 135 81-233 84-218 (694)
38 PRK12370 invasion protein regu 99.3 4.7E-11 1E-15 110.7 15.2 92 96-204 317-408 (553)
39 PRK02603 photosystem I assembl 99.3 3.7E-11 8E-16 94.6 12.3 109 79-201 31-153 (172)
40 PRK12370 invasion protein regu 99.3 4.6E-11 9.9E-16 110.7 14.8 116 99-232 354-470 (553)
41 PF13432 TPR_16: Tetratricopep 99.3 1.4E-11 3E-16 80.8 7.9 64 139-202 2-65 (65)
42 TIGR02552 LcrH_SycD type III s 99.3 3.9E-11 8.5E-16 90.3 11.4 117 104-238 4-120 (135)
43 cd00189 TPR Tetratricopeptide 99.3 5.7E-11 1.2E-15 82.0 11.2 99 85-200 2-100 (100)
44 TIGR02521 type_IV_pilW type IV 99.3 1.5E-10 3.2E-15 94.0 15.2 129 86-232 68-198 (234)
45 PRK15331 chaperone protein Sic 99.3 1.3E-10 2.8E-15 88.7 13.2 109 80-206 34-142 (165)
46 KOG0547 Translocase of outer m 99.3 8.4E-11 1.8E-15 102.5 13.7 108 80-204 323-430 (606)
47 PRK11189 lipoprotein NlpI; Pro 99.3 8.1E-11 1.8E-15 100.7 13.5 125 97-235 40-164 (296)
48 TIGR02521 type_IV_pilW type IV 99.3 2.5E-10 5.5E-15 92.6 15.7 136 82-235 30-167 (234)
49 KOG0544 FKBP-type peptidyl-pro 99.3 5.5E-12 1.2E-16 85.2 4.7 58 2-62 50-107 (108)
50 PF12895 Apc3: Anaphase-promot 99.3 3.3E-11 7.1E-16 83.3 8.0 83 96-194 2-84 (84)
51 PRK15174 Vi polysaccharide exp 99.3 1.3E-10 2.8E-15 109.6 14.6 128 89-234 218-349 (656)
52 CHL00033 ycf3 photosystem I as 99.2 2.6E-10 5.7E-15 89.3 13.2 109 80-202 32-154 (168)
53 PRK15174 Vi polysaccharide exp 99.2 1.7E-10 3.7E-15 108.9 14.3 132 83-232 246-381 (656)
54 COG5010 TadD Flp pilus assembl 99.2 2.3E-10 4.9E-15 92.8 12.6 127 80-223 97-223 (257)
55 PF13414 TPR_11: TPR repeat; P 99.2 4.1E-11 8.8E-16 79.5 6.7 66 83-165 3-69 (69)
56 KOG0553 TPR repeat-containing 99.2 9.5E-11 2E-15 96.8 10.2 100 137-237 84-183 (304)
57 PRK10803 tol-pal system protei 99.2 7E-10 1.5E-14 92.7 14.4 114 84-211 143-260 (263)
58 KOG1173 Anaphase-promoting com 99.2 1.8E-10 3.8E-15 102.0 11.2 116 87-212 418-533 (611)
59 KOG0546 HSP90 co-chaperone CPR 99.2 1.4E-10 3E-15 97.7 9.1 157 75-231 214-372 (372)
60 PF13429 TPR_15: Tetratricopep 99.2 1.5E-10 3.3E-15 98.1 9.7 130 83-230 146-275 (280)
61 KOG2076 RNA polymerase III tra 99.2 2.7E-09 5.8E-14 99.1 17.7 135 82-234 138-272 (895)
62 TIGR02917 PEP_TPR_lipo putativ 99.1 1E-09 2.2E-14 106.0 15.0 133 84-235 737-869 (899)
63 PLN02789 farnesyltranstransfer 99.1 2.7E-09 5.8E-14 91.8 15.6 144 80-242 68-220 (320)
64 PRK11447 cellulose synthase su 99.1 8.8E-10 1.9E-14 110.3 14.4 127 88-232 274-414 (1157)
65 TIGR02917 PEP_TPR_lipo putativ 99.1 2E-09 4.4E-14 104.0 16.4 136 80-233 122-257 (899)
66 KOG1125 TPR repeat-containing 99.1 1.3E-10 2.8E-15 103.1 7.3 101 83-200 430-530 (579)
67 TIGR03302 OM_YfiO outer membra 99.1 2.2E-09 4.8E-14 88.6 14.1 131 84-229 71-229 (235)
68 PF13371 TPR_9: Tetratricopept 99.1 4.2E-10 9.1E-15 75.4 8.0 70 141-210 2-71 (73)
69 PRK11447 cellulose synthase su 99.1 1.7E-09 3.6E-14 108.4 15.6 130 87-234 355-526 (1157)
70 COG3063 PilF Tfp pilus assembl 99.1 1.9E-09 4E-14 86.0 12.0 117 133-250 34-150 (250)
71 KOG4555 TPR repeat-containing 99.1 3.7E-09 7.9E-14 77.1 12.3 106 77-199 37-146 (175)
72 PRK11788 tetratricopeptide rep 99.1 3.8E-09 8.3E-14 93.5 15.1 128 88-234 185-313 (389)
73 PRK10049 pgaA outer membrane p 99.1 2.7E-09 5.8E-14 102.6 15.0 114 83-214 49-162 (765)
74 PRK15363 pathogenicity island 99.1 1.3E-09 2.8E-14 82.9 10.1 96 136-232 37-132 (157)
75 PRK10866 outer membrane biogen 99.1 1.1E-08 2.5E-13 84.8 16.4 131 83-227 32-186 (243)
76 PF13512 TPR_18: Tetratricopep 99.1 3.5E-09 7.6E-14 79.1 11.9 110 83-206 10-137 (142)
77 PF13525 YfiO: Outer membrane 99.1 1.1E-08 2.4E-13 82.7 15.2 131 82-226 4-151 (203)
78 PRK11788 tetratricopeptide rep 99.1 7.6E-09 1.6E-13 91.6 15.7 126 76-201 28-174 (389)
79 PF14559 TPR_19: Tetratricopep 99.0 5.3E-10 1.1E-14 73.8 6.2 68 144-211 1-68 (68)
80 KOG0550 Molecular chaperone (D 99.0 4.6E-09 9.9E-14 90.2 13.1 157 81-243 201-361 (486)
81 KOG1125 TPR repeat-containing 99.0 3.6E-09 7.7E-14 94.1 12.9 183 75-260 311-557 (579)
82 KOG2003 TPR repeat-containing 99.0 1.4E-09 3.1E-14 94.3 10.1 143 83-243 490-632 (840)
83 KOG1308 Hsp70-interacting prot 99.0 3.1E-10 6.7E-15 95.2 5.7 109 75-200 106-214 (377)
84 KOG0549 FKBP-type peptidyl-pro 99.0 4E-10 8.7E-15 86.2 5.4 62 2-66 118-179 (188)
85 PLN03088 SGT1, suppressor of 99.0 4E-09 8.7E-14 92.4 12.2 113 137-250 5-117 (356)
86 COG4235 Cytochrome c biogenesi 99.0 5.1E-09 1.1E-13 87.0 11.8 115 80-211 153-270 (287)
87 KOG2002 TPR-containing nuclear 99.0 1.3E-08 2.8E-13 95.3 15.1 152 87-254 274-429 (1018)
88 COG1729 Uncharacterized protei 99.0 8.2E-09 1.8E-13 84.8 12.3 113 84-210 142-257 (262)
89 cd00189 TPR Tetratricopeptide 99.0 1.1E-08 2.5E-13 70.2 11.5 95 136-231 2-96 (100)
90 PLN02789 farnesyltranstransfer 99.0 2.5E-08 5.5E-13 85.8 15.8 134 92-245 46-182 (320)
91 PF13432 TPR_16: Tetratricopep 99.0 1.3E-09 2.9E-14 71.2 6.2 64 88-168 2-65 (65)
92 KOG2002 TPR-containing nuclear 99.0 4.4E-09 9.6E-14 98.3 11.2 143 80-239 161-378 (1018)
93 COG5010 TadD Flp pilus assembl 99.0 1.4E-08 3.1E-13 82.5 12.7 127 87-230 70-196 (257)
94 KOG4162 Predicted calmodulin-b 99.0 5.2E-09 1.1E-13 95.8 10.9 105 81-202 682-788 (799)
95 PRK15179 Vi polysaccharide bio 99.0 1.9E-08 4E-13 94.8 14.9 110 76-202 113-222 (694)
96 COG4785 NlpI Lipoprotein NlpI, 98.9 3.2E-09 6.9E-14 84.0 7.6 134 46-202 34-167 (297)
97 PRK10049 pgaA outer membrane p 98.9 1.8E-08 3.9E-13 96.9 14.1 106 84-206 360-465 (765)
98 CHL00033 ycf3 photosystem I as 98.9 1.3E-08 2.9E-13 79.6 10.7 112 90-216 6-120 (168)
99 PRK14574 hmsH outer membrane p 98.9 2.8E-08 6.1E-13 95.2 14.7 155 82-238 33-204 (822)
100 COG4783 Putative Zn-dependent 98.9 4.5E-08 9.7E-13 85.9 14.3 128 81-225 304-431 (484)
101 PRK14720 transcript cleavage f 98.9 2E-08 4.4E-13 95.7 12.9 142 80-242 28-188 (906)
102 PF09976 TPR_21: Tetratricopep 98.9 4.1E-08 8.9E-13 75.0 12.0 127 81-222 9-138 (145)
103 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.7E-08 5.9E-13 72.6 10.1 100 136-236 4-109 (119)
104 PF14559 TPR_19: Tetratricopep 98.9 1.2E-08 2.5E-13 67.2 7.3 67 93-176 1-67 (68)
105 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.2E-08 2.6E-13 89.6 8.4 63 136-198 77-142 (453)
106 PF06552 TOM20_plant: Plant sp 98.8 5.8E-08 1.3E-12 75.0 10.9 99 99-214 7-126 (186)
107 PF12688 TPR_5: Tetratrico pep 98.8 1.1E-07 2.3E-12 69.9 11.3 99 84-196 2-103 (120)
108 KOG1173 Anaphase-promoting com 98.8 9.7E-08 2.1E-12 85.0 12.3 138 89-244 386-530 (611)
109 PF00254 FKBP_C: FKBP-type pep 98.8 1.9E-08 4.2E-13 70.9 6.3 57 2-60 38-94 (94)
110 PRK02603 photosystem I assembl 98.8 9.5E-08 2.1E-12 75.1 10.8 83 134-216 35-120 (172)
111 PF13371 TPR_9: Tetratricopept 98.8 4.6E-08 1E-12 65.3 7.5 70 90-176 2-71 (73)
112 KOG3060 Uncharacterized conser 98.8 1E-06 2.2E-11 71.6 16.1 142 86-246 89-232 (289)
113 KOG2076 RNA polymerase III tra 98.8 3.1E-07 6.7E-12 85.7 15.0 105 80-200 411-515 (895)
114 PF13429 TPR_15: Tetratricopep 98.7 3.2E-08 7E-13 83.9 8.2 132 84-231 111-242 (280)
115 PF09976 TPR_21: Tetratricopep 98.7 9.1E-07 2E-11 67.5 15.2 98 83-195 48-145 (145)
116 PF13424 TPR_12: Tetratricopep 98.7 1.9E-08 4.1E-13 68.2 5.1 64 134-197 5-75 (78)
117 KOG1840 Kinesin light chain [C 98.7 4E-07 8.7E-12 82.4 13.3 149 80-238 238-402 (508)
118 TIGR03516 ppisom_GldI peptidyl 98.7 3.7E-08 8E-13 77.3 5.9 59 2-63 118-176 (177)
119 COG0545 FkpA FKBP-type peptidy 98.7 4.2E-08 9E-13 76.9 5.9 53 8-62 152-204 (205)
120 KOG1128 Uncharacterized conser 98.7 1.6E-07 3.5E-12 85.9 10.1 129 85-231 487-615 (777)
121 KOG1129 TPR repeat-containing 98.7 7.9E-08 1.7E-12 80.6 7.5 146 83-229 290-455 (478)
122 COG4783 Putative Zn-dependent 98.7 4.8E-07 1E-11 79.5 12.6 109 86-211 343-451 (484)
123 TIGR00540 hemY_coli hemY prote 98.6 2.8E-06 6E-11 76.1 17.6 134 79-230 80-214 (409)
124 PF12895 Apc3: Anaphase-promot 98.6 8.3E-08 1.8E-12 66.1 5.9 78 147-225 2-81 (84)
125 PF13424 TPR_12: Tetratricopep 98.6 2.2E-07 4.8E-12 62.9 7.7 74 80-163 2-75 (78)
126 PRK10153 DNA-binding transcrip 98.6 1.3E-06 2.9E-11 79.9 15.1 121 82-203 338-488 (517)
127 KOG1156 N-terminal acetyltrans 98.6 1.1E-06 2.3E-11 79.6 14.0 119 84-219 8-126 (700)
128 TIGR00540 hemY_coli hemY prote 98.6 4.1E-07 8.8E-12 81.4 11.2 133 82-231 262-398 (409)
129 KOG1310 WD40 repeat protein [G 98.6 2.2E-07 4.8E-12 82.2 9.0 119 76-211 367-488 (758)
130 COG4235 Cytochrome c biogenesi 98.6 1.3E-06 2.9E-11 72.7 13.2 121 99-237 138-261 (287)
131 PRK14574 hmsH outer membrane p 98.6 6.8E-07 1.5E-11 85.9 12.8 114 90-221 109-222 (822)
132 cd05804 StaR_like StaR_like; a 98.6 6.8E-07 1.5E-11 78.2 11.9 100 83-199 114-217 (355)
133 cd05804 StaR_like StaR_like; a 98.6 1.7E-06 3.7E-11 75.7 13.7 148 84-232 44-215 (355)
134 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 9.4E-07 2E-11 77.8 11.8 73 78-164 70-142 (453)
135 PRK11906 transcriptional regul 98.6 2.2E-06 4.9E-11 75.6 14.0 132 86-235 258-404 (458)
136 PRK10747 putative protoheme IX 98.5 6.2E-06 1.3E-10 73.6 17.1 128 78-222 79-207 (398)
137 COG2956 Predicted N-acetylgluc 98.5 7.2E-06 1.6E-10 68.9 16.1 64 137-200 217-281 (389)
138 KOG1129 TPR repeat-containing 98.5 7.6E-07 1.6E-11 74.8 10.0 132 87-218 227-374 (478)
139 PF03704 BTAD: Bacterial trans 98.5 7.5E-06 1.6E-10 62.4 14.7 114 83-196 6-124 (146)
140 COG2956 Predicted N-acetylgluc 98.5 3.1E-06 6.7E-11 71.0 12.8 150 71-223 98-270 (389)
141 KOG1128 Uncharacterized conser 98.5 2.4E-06 5.3E-11 78.3 13.1 147 78-224 419-575 (777)
142 KOG1840 Kinesin light chain [C 98.5 1.9E-06 4E-11 78.1 12.4 123 80-211 196-331 (508)
143 PRK10747 putative protoheme IX 98.5 2E-06 4.3E-11 76.7 12.5 129 82-232 262-390 (398)
144 COG4105 ComL DNA uptake lipopr 98.5 1.1E-05 2.4E-10 66.0 15.5 122 83-218 34-169 (254)
145 PRK10803 tol-pal system protei 98.5 1.3E-06 2.9E-11 73.1 10.0 101 136-237 144-251 (263)
146 KOG0552 FKBP-type peptidyl-pro 98.5 3.2E-07 7E-12 73.7 5.7 53 7-62 173-225 (226)
147 PF00515 TPR_1: Tetratricopept 98.4 4.3E-07 9.4E-12 51.0 4.4 34 168-201 1-34 (34)
148 PF13525 YfiO: Outer membrane 98.4 1.6E-05 3.4E-10 64.3 15.2 117 83-213 42-186 (203)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.5E-06 5.5E-11 75.2 10.6 96 89-201 206-301 (395)
150 KOG4162 Predicted calmodulin-b 98.4 6.5E-06 1.4E-10 76.0 13.3 127 87-231 654-782 (799)
151 PF12688 TPR_5: Tetratrico pep 98.4 6.7E-06 1.5E-10 60.4 10.9 91 136-226 3-99 (120)
152 PF14938 SNAP: Soluble NSF att 98.4 5.9E-06 1.3E-10 70.2 12.3 109 81-200 112-228 (282)
153 PF13428 TPR_14: Tetratricopep 98.4 1E-06 2.3E-11 52.7 5.4 42 169-210 2-43 (44)
154 PF07719 TPR_2: Tetratricopept 98.4 1.1E-06 2.4E-11 49.2 5.0 34 168-201 1-34 (34)
155 KOG4648 Uncharacterized conser 98.4 1.2E-06 2.5E-11 74.1 7.1 98 137-235 100-197 (536)
156 PF13431 TPR_17: Tetratricopep 98.3 4.7E-07 1E-11 50.9 2.9 34 156-189 1-34 (34)
157 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.1E-05 2.4E-10 71.1 12.7 107 96-222 182-288 (395)
158 COG4700 Uncharacterized protei 98.3 3.3E-05 7.1E-10 60.2 13.5 148 83-251 89-239 (251)
159 PRK11570 peptidyl-prolyl cis-t 98.3 1.2E-06 2.6E-11 70.6 5.8 53 8-62 153-205 (206)
160 KOG0543 FKBP-type peptidyl-pro 98.3 6.8E-06 1.5E-10 71.0 10.5 100 83-199 257-357 (397)
161 KOG4234 TPR repeat-containing 98.3 5.5E-06 1.2E-10 65.1 9.0 100 137-237 98-202 (271)
162 KOG1174 Anaphase-promoting com 98.3 2.5E-05 5.4E-10 67.7 13.6 152 82-235 333-503 (564)
163 PRK10153 DNA-binding transcrip 98.3 8.8E-06 1.9E-10 74.6 11.6 36 136-171 455-490 (517)
164 PF04733 Coatomer_E: Coatomer 98.3 4.7E-06 1E-10 70.9 9.2 120 91-229 139-262 (290)
165 PRK15331 chaperone protein Sic 98.3 4.7E-06 1E-10 63.8 7.8 95 136-231 39-133 (165)
166 PF12569 NARP1: NMDA receptor- 98.3 3.6E-05 7.8E-10 70.4 14.7 96 137-234 197-292 (517)
167 PRK11906 transcriptional regul 98.2 7.9E-06 1.7E-10 72.2 10.0 89 97-202 318-406 (458)
168 KOG1174 Anaphase-promoting com 98.2 9.7E-06 2.1E-10 70.2 10.0 137 85-238 302-439 (564)
169 PRK14720 transcript cleavage f 98.2 2.5E-05 5.5E-10 75.0 12.9 112 84-213 117-268 (906)
170 KOG2003 TPR repeat-containing 98.2 3.9E-05 8.5E-10 67.3 12.7 136 80-215 555-707 (840)
171 KOG3060 Uncharacterized conser 98.2 0.00019 4.1E-09 58.6 15.7 126 88-230 57-182 (289)
172 PF14853 Fis1_TPR_C: Fis1 C-te 98.2 1.8E-05 3.9E-10 49.0 7.5 47 169-215 2-48 (53)
173 COG1729 Uncharacterized protei 98.1 2.2E-05 4.8E-10 64.8 10.0 102 137-239 144-251 (262)
174 PF14938 SNAP: Soluble NSF att 98.1 5.3E-05 1.1E-09 64.4 12.2 139 80-231 32-183 (282)
175 PRK10866 outer membrane biogen 98.1 0.00017 3.7E-09 59.9 14.9 118 83-214 69-221 (243)
176 PF00515 TPR_1: Tetratricopept 98.1 3.3E-06 7.1E-11 47.3 3.2 32 136-167 3-34 (34)
177 PF13428 TPR_14: Tetratricopep 98.1 5.3E-06 1.1E-10 49.5 4.1 41 136-176 3-43 (44)
178 PF12569 NARP1: NMDA receptor- 98.1 8E-05 1.7E-09 68.2 13.6 144 80-224 35-250 (517)
179 KOG1156 N-terminal acetyltrans 98.1 5E-05 1.1E-09 69.1 11.4 122 82-220 40-161 (700)
180 KOG1127 TPR repeat-containing 98.0 8.8E-05 1.9E-09 70.6 12.7 140 85-224 494-652 (1238)
181 KOG1130 Predicted G-alpha GTPa 98.0 6.2E-06 1.4E-10 71.4 4.8 110 80-200 192-307 (639)
182 PRK10902 FKBP-type peptidyl-pr 98.0 1.2E-05 2.6E-10 67.3 6.4 57 8-67 197-253 (269)
183 KOG3785 Uncharacterized conser 98.0 3.8E-05 8.2E-10 65.5 9.3 101 91-211 30-130 (557)
184 PF04733 Coatomer_E: Coatomer 98.0 7.9E-05 1.7E-09 63.5 11.4 92 98-206 182-274 (290)
185 KOG0495 HAT repeat protein [RN 98.0 0.00029 6.3E-09 64.5 15.0 151 90-243 591-757 (913)
186 PRK10941 hypothetical protein; 98.0 9.9E-05 2.2E-09 61.9 10.8 77 131-207 178-254 (269)
187 PF13181 TPR_8: Tetratricopept 98.0 1.5E-05 3.2E-10 44.5 4.1 33 169-201 2-34 (34)
188 PF15015 NYD-SP12_N: Spermatog 98.0 8E-05 1.7E-09 64.8 10.1 116 81-196 174-290 (569)
189 KOG1127 TPR repeat-containing 97.9 4E-05 8.7E-10 72.8 8.8 113 84-213 563-675 (1238)
190 PF12968 DUF3856: Domain of Un 97.9 0.0018 3.9E-08 46.8 14.8 106 87-197 13-129 (144)
191 KOG2796 Uncharacterized conser 97.9 0.00033 7.1E-09 57.6 12.3 130 85-214 179-335 (366)
192 KOG4642 Chaperone-dependent E3 97.9 2.5E-05 5.5E-10 63.0 5.7 87 138-224 14-100 (284)
193 PF13512 TPR_18: Tetratricopep 97.9 6.4E-05 1.4E-09 56.4 7.5 70 136-205 12-84 (142)
194 KOG4555 TPR repeat-containing 97.9 0.00021 4.5E-09 52.6 9.3 93 137-230 46-142 (175)
195 PF07719 TPR_2: Tetratricopept 97.8 2.4E-05 5.3E-10 43.6 3.4 32 136-167 3-34 (34)
196 COG3118 Thioredoxin domain-con 97.8 0.00068 1.5E-08 56.7 13.1 112 84-212 135-282 (304)
197 KOG4151 Myosin assembly protei 97.8 0.00011 2.4E-09 68.4 9.2 125 75-212 45-171 (748)
198 COG4785 NlpI Lipoprotein NlpI, 97.8 7.4E-05 1.6E-09 59.7 6.3 73 133-205 64-136 (297)
199 KOG0495 HAT repeat protein [RN 97.8 0.0011 2.3E-08 61.0 14.2 123 90-229 658-780 (913)
200 KOG4507 Uncharacterized conser 97.7 7.2E-05 1.6E-09 67.5 6.6 108 90-213 614-721 (886)
201 KOG3785 Uncharacterized conser 97.7 0.00059 1.3E-08 58.4 11.4 30 84-113 58-87 (557)
202 KOG3081 Vesicle coat complex C 97.6 0.0015 3.2E-08 53.9 11.8 141 88-229 113-268 (299)
203 COG2976 Uncharacterized protei 97.6 0.0032 6.9E-08 49.6 12.8 103 85-202 91-193 (207)
204 KOG0545 Aryl-hydrocarbon recep 97.6 0.00032 6.8E-09 57.1 7.4 107 132-239 176-300 (329)
205 COG3071 HemY Uncharacterized e 97.6 0.005 1.1E-07 53.4 15.0 126 78-220 79-205 (400)
206 PF13174 TPR_6: Tetratricopept 97.6 0.00015 3.2E-09 39.9 4.0 33 169-201 1-33 (33)
207 KOG4814 Uncharacterized conser 97.6 0.0014 3E-08 60.0 11.9 106 82-198 353-458 (872)
208 KOG3364 Membrane protein invol 97.6 0.00087 1.9E-08 49.5 8.8 81 133-213 31-116 (149)
209 PF13431 TPR_17: Tetratricopep 97.5 9.2E-05 2E-09 41.4 2.7 33 105-154 1-33 (34)
210 KOG2053 Mitochondrial inherita 97.5 0.0036 7.8E-08 59.3 14.3 120 92-230 18-140 (932)
211 COG4105 ComL DNA uptake lipopr 97.5 0.0076 1.7E-07 49.6 14.3 150 85-251 73-248 (254)
212 KOG2376 Signal recognition par 97.5 0.0019 4.1E-08 58.6 11.7 123 87-230 83-251 (652)
213 KOG1941 Acetylcholine receptor 97.5 0.00064 1.4E-08 58.3 8.3 139 82-220 5-180 (518)
214 PF06552 TOM20_plant: Plant sp 97.5 0.00065 1.4E-08 52.8 7.7 89 149-237 6-114 (186)
215 KOG1586 Protein required for f 97.5 0.011 2.4E-07 48.0 14.8 108 86-204 116-231 (288)
216 KOG1130 Predicted G-alpha GTPa 97.5 0.00083 1.8E-08 58.6 8.9 104 84-198 236-345 (639)
217 COG4700 Uncharacterized protei 97.5 0.0069 1.5E-07 47.6 13.0 125 94-237 67-194 (251)
218 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0089 1.9E-07 46.9 14.5 113 84-213 96-213 (291)
219 PF13181 TPR_8: Tetratricopept 97.4 0.00014 3E-09 40.5 2.7 32 136-167 3-34 (34)
220 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0058 1.3E-07 48.0 12.9 108 92-213 139-247 (291)
221 PF13176 TPR_7: Tetratricopept 97.4 0.00037 8.1E-09 39.5 4.1 28 170-197 1-28 (36)
222 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00055 1.2E-08 42.4 5.0 41 136-176 3-43 (53)
223 smart00028 TPR Tetratricopepti 97.3 0.00047 1E-08 36.8 3.9 32 169-200 2-33 (34)
224 KOG0376 Serine-threonine phosp 97.2 0.00081 1.8E-08 59.6 6.6 88 137-224 7-94 (476)
225 KOG3824 Huntingtin interacting 97.2 0.0013 2.9E-08 55.3 7.3 75 136-210 118-192 (472)
226 COG2912 Uncharacterized conser 97.2 0.0032 6.9E-08 52.3 9.2 77 130-206 177-253 (269)
227 KOG4340 Uncharacterized conser 97.2 0.0013 2.9E-08 55.1 6.7 94 82-192 143-265 (459)
228 PF03704 BTAD: Bacterial trans 97.1 0.011 2.5E-07 44.7 11.1 98 139-236 11-136 (146)
229 PF10300 DUF3808: Protein of u 97.1 0.005 1.1E-07 56.1 10.3 105 81-199 265-378 (468)
230 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0035 7.5E-08 53.3 8.4 81 137-217 84-168 (390)
231 PF04781 DUF627: Protein of un 97.1 0.0086 1.9E-07 42.9 9.1 95 89-197 2-107 (111)
232 KOG2796 Uncharacterized conser 97.1 0.015 3.3E-07 48.1 11.7 105 133-238 211-321 (366)
233 KOG2376 Signal recognition par 97.0 0.017 3.6E-07 52.7 12.9 118 84-204 13-146 (652)
234 COG4976 Predicted methyltransf 97.0 0.0013 2.7E-08 53.1 4.7 61 142-202 3-63 (287)
235 PF08631 SPO22: Meiosis protei 97.0 0.059 1.3E-06 45.7 15.2 124 73-199 25-152 (278)
236 PLN03081 pentatricopeptide (PP 96.9 0.015 3.3E-07 55.8 12.8 146 83-231 391-556 (697)
237 KOG2610 Uncharacterized conser 96.9 0.021 4.6E-07 48.8 11.8 148 85-232 105-277 (491)
238 KOG1915 Cell cycle control pro 96.9 0.028 6.1E-07 50.2 13.0 89 95-196 378-499 (677)
239 KOG1941 Acetylcholine receptor 96.9 0.0074 1.6E-07 52.0 9.2 100 87-197 126-235 (518)
240 PLN03081 pentatricopeptide (PP 96.9 0.011 2.5E-07 56.6 11.9 62 136-197 496-557 (697)
241 PF09986 DUF2225: Uncharacteri 96.9 0.09 1.9E-06 42.8 15.3 103 90-202 84-199 (214)
242 COG3071 HemY Uncharacterized e 96.9 0.022 4.7E-07 49.5 12.1 119 83-222 263-381 (400)
243 PF13176 TPR_7: Tetratricopept 96.9 0.00086 1.9E-08 37.9 2.4 28 136-163 1-28 (36)
244 PF13174 TPR_6: Tetratricopept 96.9 0.00097 2.1E-08 36.5 2.6 32 136-167 2-33 (33)
245 PRK04841 transcriptional regul 96.9 0.03 6.4E-07 55.3 14.5 102 87-199 495-604 (903)
246 PF10602 RPN7: 26S proteasome 96.8 0.023 5E-07 44.7 11.0 102 83-198 36-143 (177)
247 PF10300 DUF3808: Protein of u 96.8 0.022 4.8E-07 51.9 12.1 98 96-210 246-347 (468)
248 smart00028 TPR Tetratricopepti 96.8 0.0025 5.4E-08 33.8 3.7 32 136-167 3-34 (34)
249 PLN03077 Protein ECB2; Provisi 96.8 0.034 7.4E-07 54.7 13.9 136 83-220 554-709 (857)
250 PF14561 TPR_20: Tetratricopep 96.8 0.011 2.4E-07 41.0 7.6 65 153-217 7-73 (90)
251 PLN03218 maturation of RBCL 1; 96.7 0.053 1.1E-06 54.3 15.0 100 135-237 685-788 (1060)
252 PLN03218 maturation of RBCL 1; 96.7 0.046 9.9E-07 54.7 14.4 60 137-196 582-642 (1060)
253 KOG4340 Uncharacterized conser 96.7 0.019 4.1E-07 48.4 9.7 123 84-223 45-199 (459)
254 PRK15095 FKBP-type peptidyl-pr 96.7 0.0014 2.9E-08 50.6 2.7 38 2-40 38-75 (156)
255 KOG1308 Hsp70-interacting prot 96.6 0.00071 1.5E-08 57.5 1.1 88 142-230 122-209 (377)
256 PF09613 HrpB1_HrpK: Bacterial 96.6 0.22 4.8E-06 38.3 14.7 114 81-214 8-122 (160)
257 KOG1070 rRNA processing protei 96.6 0.05 1.1E-06 54.4 13.0 64 137-200 1533-1596(1710)
258 KOG4507 Uncharacterized conser 96.6 0.018 4E-07 52.5 9.3 101 86-201 215-316 (886)
259 PF10579 Rapsyn_N: Rapsyn N-te 96.5 0.02 4.4E-07 38.2 7.2 68 82-163 5-72 (80)
260 COG3629 DnrI DNA-binding trans 96.5 0.04 8.6E-07 46.4 10.7 107 90-197 110-216 (280)
261 KOG2610 Uncharacterized conser 96.4 0.014 2.9E-07 50.0 7.3 94 94-204 186-285 (491)
262 PF05843 Suf: Suppressor of fo 96.4 0.065 1.4E-06 45.5 11.7 109 88-213 6-118 (280)
263 KOG3081 Vesicle coat complex C 96.4 0.15 3.1E-06 42.4 12.9 116 89-204 143-278 (299)
264 PLN03077 Protein ECB2; Provisi 96.4 0.053 1.2E-06 53.4 12.5 108 88-200 529-656 (857)
265 PRK04841 transcriptional regul 96.3 0.047 1E-06 53.9 11.9 102 85-198 454-561 (903)
266 KOG2396 HAT (Half-A-TPR) repea 96.3 0.14 3E-06 46.2 13.0 97 101-214 89-186 (568)
267 PF07079 DUF1347: Protein of u 96.3 0.074 1.6E-06 47.3 11.2 133 80-216 376-544 (549)
268 KOG3824 Huntingtin interacting 96.3 0.021 4.6E-07 48.3 7.5 79 83-178 116-194 (472)
269 PF04184 ST7: ST7 protein; In 96.3 0.085 1.8E-06 47.5 11.6 27 92-118 177-203 (539)
270 KOG1070 rRNA processing protei 96.2 0.2 4.4E-06 50.3 14.7 115 135-250 1565-1681(1710)
271 PF02259 FAT: FAT domain; Int 96.1 0.11 2.4E-06 45.1 11.6 118 83-200 184-341 (352)
272 KOG1585 Protein required for f 96.0 0.13 2.7E-06 42.3 10.7 97 91-198 118-220 (308)
273 PF04184 ST7: ST7 protein; In 96.0 0.11 2.5E-06 46.7 11.3 107 98-204 215-332 (539)
274 PRK10941 hypothetical protein; 96.0 0.067 1.4E-06 45.0 9.5 79 83-178 181-259 (269)
275 KOG2471 TPR repeat-containing 96.0 0.03 6.6E-07 50.1 7.4 120 85-213 242-380 (696)
276 KOG1586 Protein required for f 95.9 0.18 3.8E-06 41.2 10.8 98 94-202 84-188 (288)
277 KOG1915 Cell cycle control pro 95.8 0.54 1.2E-05 42.4 14.5 131 90-242 80-210 (677)
278 PF14561 TPR_20: Tetratricopep 95.7 0.16 3.5E-06 35.2 8.7 49 102-167 7-55 (90)
279 PF13374 TPR_10: Tetratricopep 95.6 0.032 6.9E-07 32.0 4.5 29 169-197 3-31 (42)
280 KOG2471 TPR repeat-containing 95.4 0.011 2.5E-07 52.8 2.8 94 87-181 287-382 (696)
281 COG3947 Response regulator con 95.3 0.097 2.1E-06 44.0 7.6 67 128-194 273-339 (361)
282 PF09613 HrpB1_HrpK: Bacterial 95.2 0.27 5.8E-06 37.8 9.3 81 136-216 12-92 (160)
283 COG1047 SlpA FKBP-type peptidy 95.2 0.017 3.8E-07 44.8 2.9 38 2-40 36-73 (174)
284 PF10516 SHNi-TPR: SHNi-TPR; 95.2 0.043 9.3E-07 31.3 3.8 30 169-198 2-31 (38)
285 PF02259 FAT: FAT domain; Int 95.2 1.2 2.6E-05 38.5 14.8 120 81-213 144-303 (352)
286 PF05843 Suf: Suppressor of fo 95.2 0.32 7E-06 41.2 10.8 106 136-242 3-110 (280)
287 PF07720 TPR_3: Tetratricopept 95.1 0.085 1.9E-06 29.7 4.9 33 169-201 2-36 (36)
288 PF10373 EST1_DNA_bind: Est1 D 95.0 0.34 7.4E-06 40.6 10.7 62 153-214 1-62 (278)
289 PF13374 TPR_10: Tetratricopep 95.0 0.029 6.3E-07 32.2 2.9 28 136-163 4-31 (42)
290 PRK10737 FKBP-type peptidyl-pr 94.9 0.025 5.4E-07 45.1 3.0 38 2-40 35-72 (196)
291 PRK13184 pknD serine/threonine 94.8 0.6 1.3E-05 46.1 12.7 107 89-210 481-594 (932)
292 KOG1585 Protein required for f 94.8 2 4.3E-05 35.6 14.9 131 83-224 31-172 (308)
293 KOG2300 Uncharacterized conser 94.8 1.3 2.9E-05 40.0 13.6 99 83-198 367-475 (629)
294 KOG3364 Membrane protein invol 94.6 0.19 4.2E-06 37.4 6.8 71 87-173 36-110 (149)
295 PF12862 Apc5: Anaphase-promot 94.4 0.2 4.4E-06 34.9 6.5 58 143-200 7-73 (94)
296 PF12862 Apc5: Anaphase-promot 94.3 0.17 3.7E-06 35.3 5.8 66 92-165 7-72 (94)
297 KOG2053 Mitochondrial inherita 94.3 0.62 1.3E-05 44.9 11.0 89 146-235 21-109 (932)
298 COG4976 Predicted methyltransf 94.2 0.083 1.8E-06 42.9 4.4 59 92-167 4-62 (287)
299 PF08631 SPO22: Meiosis protei 94.0 3.2 6.9E-05 35.1 14.1 103 93-205 3-124 (278)
300 COG3898 Uncharacterized membra 93.9 1.5 3.3E-05 38.7 11.8 106 92-208 197-302 (531)
301 KOG1550 Extracellular protein 93.6 1.3 2.9E-05 41.4 12.1 91 87-198 292-394 (552)
302 PF07721 TPR_4: Tetratricopept 93.4 0.13 2.9E-06 26.4 3.1 24 169-192 2-25 (26)
303 COG3118 Thioredoxin domain-con 93.4 1.9 4.1E-05 36.5 11.3 89 138-226 138-260 (304)
304 KOG4814 Uncharacterized conser 93.3 0.62 1.3E-05 43.4 8.9 85 136-220 356-446 (872)
305 COG3914 Spy Predicted O-linked 93.1 2.2 4.8E-05 39.4 12.0 106 89-211 73-185 (620)
306 KOG0686 COP9 signalosome, subu 92.8 0.78 1.7E-05 40.4 8.4 97 85-195 152-256 (466)
307 COG3898 Uncharacterized membra 92.7 1.8 3.9E-05 38.2 10.4 98 139-237 297-397 (531)
308 TIGR03504 FimV_Cterm FimV C-te 92.7 0.56 1.2E-05 27.7 5.2 25 172-196 3-27 (44)
309 COG5191 Uncharacterized conser 92.7 0.28 6E-06 41.8 5.4 76 136-211 109-185 (435)
310 PF04781 DUF627: Protein of un 92.6 1.9 4E-05 31.0 8.8 72 140-211 2-87 (111)
311 PF12968 DUF3856: Domain of Un 92.4 0.69 1.5E-05 33.7 6.4 75 83-163 55-129 (144)
312 COG2912 Uncharacterized conser 92.4 1.1 2.4E-05 37.5 8.5 73 88-177 186-258 (269)
313 TIGR02561 HrpB1_HrpK type III 92.3 1.5 3.3E-05 33.3 8.5 74 140-213 16-89 (153)
314 PF10345 Cohesin_load: Cohesin 92.3 7.2 0.00016 37.0 15.1 118 85-202 303-446 (608)
315 PF04910 Tcf25: Transcriptiona 92.0 3 6.6E-05 36.8 11.4 104 96-204 7-140 (360)
316 PHA02537 M terminase endonucle 92.0 0.75 1.6E-05 37.7 7.0 117 94-216 94-225 (230)
317 PF13281 DUF4071: Domain of un 91.9 8.6 0.00019 34.0 14.0 97 88-201 184-338 (374)
318 PF10255 Paf67: RNA polymerase 91.9 0.35 7.5E-06 43.0 5.3 60 136-196 124-192 (404)
319 PF10952 DUF2753: Protein of u 91.7 1.5 3.4E-05 32.0 7.5 117 85-210 3-124 (140)
320 PF11817 Foie-gras_1: Foie gra 91.6 1.3 2.9E-05 36.7 8.4 61 88-159 183-243 (247)
321 TIGR00115 tig trigger factor. 91.3 0.79 1.7E-05 41.1 7.2 57 2-66 177-233 (408)
322 PF10516 SHNi-TPR: SHNi-TPR; 91.3 0.41 8.9E-06 27.3 3.4 31 84-114 2-32 (38)
323 KOG0529 Protein geranylgeranyl 91.2 5.2 0.00011 35.5 11.7 135 97-253 89-241 (421)
324 PRK15180 Vi polysaccharide bio 91.0 2.6 5.5E-05 38.3 9.7 129 91-237 297-425 (831)
325 COG2976 Uncharacterized protei 91.0 6.9 0.00015 31.2 13.4 140 90-233 38-189 (207)
326 PF06957 COPI_C: Coatomer (COP 91.0 2.3 5.1E-05 38.1 9.6 126 79-206 200-338 (422)
327 KOG1550 Extracellular protein 91.0 5.9 0.00013 37.1 12.8 132 83-230 244-391 (552)
328 TIGR02561 HrpB1_HrpK type III 90.8 5.9 0.00013 30.1 13.7 86 83-185 10-95 (153)
329 PF09986 DUF2225: Uncharacteri 90.7 2.1 4.5E-05 34.8 8.4 59 96-165 138-196 (214)
330 KOG0549 FKBP-type peptidyl-pro 90.6 0.39 8.5E-06 37.5 3.9 39 2-41 2-40 (188)
331 PF10373 EST1_DNA_bind: Est1 D 90.3 1.5 3.3E-05 36.7 7.7 62 102-180 1-62 (278)
332 COG3914 Spy Predicted O-linked 90.1 5.9 0.00013 36.8 11.5 96 99-209 47-143 (620)
333 KOG3617 WD40 and TPR repeat-co 89.9 2.5 5.4E-05 40.9 9.1 117 81-197 856-996 (1416)
334 PF10345 Cohesin_load: Cohesin 89.2 18 0.00038 34.4 14.7 117 82-210 58-183 (608)
335 PF15015 NYD-SP12_N: Spermatog 89.1 2.7 5.8E-05 37.5 8.2 53 172-224 232-284 (569)
336 KOG0530 Protein farnesyltransf 89.0 13 0.00028 31.3 11.6 96 93-205 53-150 (318)
337 PF07721 TPR_4: Tetratricopept 88.9 0.63 1.4E-05 23.8 2.8 23 136-158 3-25 (26)
338 PRK01490 tig trigger factor; P 88.8 1.7 3.6E-05 39.4 7.3 56 2-65 188-243 (435)
339 PF08424 NRDE-2: NRDE-2, neces 88.3 8.7 0.00019 33.3 11.1 61 150-210 47-107 (321)
340 COG0790 FOG: TPR repeat, SEL1 88.1 15 0.00032 31.0 12.9 105 85-209 111-230 (292)
341 PF04910 Tcf25: Transcriptiona 87.9 6 0.00013 34.9 9.9 103 82-200 102-225 (360)
342 cd02681 MIT_calpain7_1 MIT: do 87.7 4.6 0.0001 26.9 7.0 34 81-114 4-37 (76)
343 PF11817 Foie-gras_1: Foie gra 87.6 4.8 0.0001 33.4 8.7 61 135-195 179-245 (247)
344 PF14863 Alkyl_sulf_dimr: Alky 87.5 4.5 9.8E-05 30.5 7.7 49 168-216 70-118 (141)
345 cd02682 MIT_AAA_Arch MIT: doma 87.3 3.2 7E-05 27.6 6.0 22 184-205 29-50 (75)
346 PF13281 DUF4071: Domain of un 87.2 21 0.00045 31.7 16.3 100 136-235 143-258 (374)
347 PF10255 Paf67: RNA polymerase 87.1 5.2 0.00011 35.8 8.9 111 90-210 129-243 (404)
348 KOG1839 Uncharacterized protei 86.5 16 0.00035 37.2 12.7 110 80-198 970-1087(1236)
349 cd02683 MIT_1 MIT: domain cont 86.2 5.9 0.00013 26.4 6.9 34 82-115 5-38 (77)
350 KOG1310 WD40 repeat protein [G 86.2 3.6 7.7E-05 37.8 7.4 77 147-223 387-466 (758)
351 PRK15180 Vi polysaccharide bio 86.1 2.3 5E-05 38.6 6.1 65 137-201 360-424 (831)
352 PF07079 DUF1347: Protein of u 85.9 6.4 0.00014 35.5 8.8 60 83-160 462-521 (549)
353 PF14863 Alkyl_sulf_dimr: Alky 85.7 1.6 3.5E-05 32.9 4.4 49 136-184 72-120 (141)
354 PF04212 MIT: MIT (microtubule 85.5 2.8 6.1E-05 27.1 5.1 34 81-114 3-36 (69)
355 PF07720 TPR_3: Tetratricopept 85.3 3.4 7.4E-05 23.1 4.6 32 84-115 2-35 (36)
356 COG3629 DnrI DNA-binding trans 85.2 4.2 9.2E-05 34.4 7.1 64 82-162 152-215 (280)
357 PF10602 RPN7: 26S proteasome 85.2 16 0.00035 28.6 12.2 93 136-228 38-139 (177)
358 KOG2422 Uncharacterized conser 85.2 33 0.00071 32.1 14.1 84 82-166 283-374 (665)
359 COG4941 Predicted RNA polymera 85.2 15 0.00033 31.9 10.3 76 136-211 331-408 (415)
360 COG4455 ImpE Protein of avirul 85.2 10 0.00022 31.0 8.8 62 142-203 9-70 (273)
361 KOG2300 Uncharacterized conser 85.0 11 0.00024 34.4 9.8 99 83-191 46-150 (629)
362 KOG2047 mRNA splicing factor [ 84.7 37 0.00081 32.3 17.4 154 86-257 390-561 (835)
363 cd02682 MIT_AAA_Arch MIT: doma 84.7 2.9 6.3E-05 27.8 4.8 33 81-113 4-36 (75)
364 cd02679 MIT_spastin MIT: domai 84.4 7.9 0.00017 26.0 6.8 65 80-144 5-73 (79)
365 cd02684 MIT_2 MIT: domain cont 83.8 5.6 0.00012 26.4 5.9 36 80-115 3-38 (75)
366 KOG3617 WD40 and TPR repeat-co 83.8 11 0.00023 36.9 9.6 83 136-218 860-983 (1416)
367 TIGR03504 FimV_Cterm FimV C-te 83.5 2 4.3E-05 25.3 3.3 27 137-163 2-28 (44)
368 PF11207 DUF2989: Protein of u 83.0 4.4 9.6E-05 32.4 6.0 78 141-220 113-196 (203)
369 PRK13184 pknD serine/threonine 82.4 17 0.00036 36.4 10.8 67 137-205 555-628 (932)
370 KOG2422 Uncharacterized conser 82.3 26 0.00055 32.8 11.2 122 87-213 239-388 (665)
371 PF09670 Cas_Cas02710: CRISPR- 82.3 29 0.00063 30.9 11.6 100 83-197 131-270 (379)
372 cd02680 MIT_calpain7_2 MIT: do 82.3 3.7 8E-05 27.3 4.5 35 81-115 4-38 (75)
373 cd02681 MIT_calpain7_1 MIT: do 81.8 2.4 5.2E-05 28.3 3.5 17 180-196 18-34 (76)
374 cd02677 MIT_SNX15 MIT: domain 81.5 13 0.00028 24.7 7.3 59 151-228 4-69 (75)
375 KOG0292 Vesicle coat complex C 81.4 34 0.00073 33.8 11.9 125 80-206 988-1122(1202)
376 cd02678 MIT_VPS4 MIT: domain c 80.5 5.1 0.00011 26.5 4.8 34 80-113 3-36 (75)
377 KOG0985 Vesicle coat protein c 79.8 20 0.00044 35.9 10.1 103 87-214 1198-1325(1666)
378 PF10579 Rapsyn_N: Rapsyn N-te 79.4 14 0.0003 24.9 6.4 59 139-197 11-72 (80)
379 smart00386 HAT HAT (Half-A-TPR 79.2 7 0.00015 20.2 4.5 29 182-210 1-29 (33)
380 PF09205 DUF1955: Domain of un 79.0 20 0.00044 26.9 7.8 61 137-197 88-149 (161)
381 KOG2041 WD40 repeat protein [G 78.5 13 0.00029 35.5 8.2 29 165-193 849-877 (1189)
382 cd02680 MIT_calpain7_2 MIT: do 78.2 4.2 9.2E-05 27.0 3.8 32 151-197 4-35 (75)
383 PF11207 DUF2989: Protein of u 77.4 6.1 0.00013 31.7 5.1 60 81-154 139-198 (203)
384 cd02683 MIT_1 MIT: domain cont 77.1 18 0.00038 24.1 6.6 17 185-201 30-46 (77)
385 cd02677 MIT_SNX15 MIT: domain 76.8 19 0.00041 23.9 7.1 35 81-115 4-38 (75)
386 cd02656 MIT MIT: domain contai 76.3 8.5 0.00018 25.3 4.9 34 81-114 4-37 (75)
387 smart00745 MIT Microtubule Int 76.1 8 0.00017 25.5 4.8 34 81-114 6-39 (77)
388 COG3014 Uncharacterized protei 75.9 23 0.0005 30.9 8.4 129 87-216 62-241 (449)
389 PF15469 Sec5: Exocyst complex 75.8 26 0.00057 27.4 8.5 24 92-115 95-118 (182)
390 COG2909 MalT ATP-dependent tra 75.3 28 0.00061 34.1 9.7 100 83-194 458-565 (894)
391 COG4649 Uncharacterized protei 75.3 39 0.00084 26.7 12.0 96 88-196 99-195 (221)
392 PF11846 DUF3366: Domain of un 74.5 13 0.00029 29.3 6.6 50 150-200 127-176 (193)
393 COG2909 MalT ATP-dependent tra 74.0 96 0.0021 30.7 15.6 105 87-199 419-528 (894)
394 COG3947 Response regulator con 74.0 19 0.00041 30.8 7.3 50 168-217 279-328 (361)
395 KOG2581 26S proteasome regulat 73.8 68 0.0015 28.8 11.7 67 136-202 211-281 (493)
396 KOG0529 Protein geranylgeranyl 73.6 68 0.0015 28.7 13.3 85 146-230 87-176 (421)
397 KOG2396 HAT (Half-A-TPR) repea 73.3 64 0.0014 29.8 10.8 99 150-248 87-186 (568)
398 PF10952 DUF2753: Protein of u 73.0 12 0.00027 27.4 5.3 79 137-215 4-106 (140)
399 COG0790 FOG: TPR repeat, SEL1 73.0 50 0.0011 27.7 10.1 80 100-201 172-270 (292)
400 PF08424 NRDE-2: NRDE-2, neces 72.4 47 0.001 28.7 9.9 82 99-197 47-131 (321)
401 KOG1464 COP9 signalosome, subu 72.4 6 0.00013 33.4 4.0 51 146-196 39-93 (440)
402 KOG1497 COP9 signalosome, subu 72.3 65 0.0014 28.0 12.2 92 134-226 103-208 (399)
403 COG1747 Uncharacterized N-term 72.2 79 0.0017 29.4 11.2 58 144-201 215-292 (711)
404 KOG2047 mRNA splicing factor [ 72.1 54 0.0012 31.3 10.3 117 81-198 423-541 (835)
405 cd02684 MIT_2 MIT: domain cont 71.8 26 0.00056 23.2 7.4 17 180-196 18-34 (75)
406 COG1747 Uncharacterized N-term 71.4 52 0.0011 30.5 9.9 114 137-255 69-182 (711)
407 COG4455 ImpE Protein of avirul 71.1 57 0.0012 26.8 9.8 63 90-169 8-70 (273)
408 cd02679 MIT_spastin MIT: domai 70.7 10 0.00022 25.5 4.2 32 150-196 5-36 (79)
409 PF02064 MAS20: MAS20 protein 70.7 17 0.00037 26.6 5.7 41 76-116 56-96 (121)
410 KOG1839 Uncharacterized protei 69.9 38 0.00082 34.7 9.5 108 80-197 929-1044(1236)
411 PF12854 PPR_1: PPR repeat 69.8 15 0.00033 19.9 4.2 27 167-193 6-32 (34)
412 smart00671 SEL1 Sel1-like repe 67.7 16 0.00034 19.5 4.1 29 169-197 2-34 (36)
413 PF04212 MIT: MIT (microtubule 67.6 20 0.00044 23.0 5.1 17 180-196 17-33 (69)
414 PF08238 Sel1: Sel1 repeat; I 66.8 16 0.00034 20.0 4.0 29 169-197 2-37 (39)
415 smart00745 MIT Microtubule Int 66.1 32 0.00069 22.6 6.0 14 187-200 34-47 (77)
416 KOG0889 Histone acetyltransfer 64.7 88 0.0019 35.8 11.4 86 131-217 2809-2902(3550)
417 KOG3783 Uncharacterized conser 64.5 56 0.0012 30.3 8.7 65 137-201 452-524 (546)
418 COG0544 Tig FKBP-type peptidyl 64.3 12 0.00026 34.0 4.7 56 1-66 187-244 (441)
419 PF12652 CotJB: CotJB protein; 64.0 23 0.00049 23.8 4.8 51 177-231 4-54 (78)
420 PF04053 Coatomer_WDAD: Coatom 63.0 47 0.001 30.3 8.2 26 136-161 349-374 (443)
421 PF12739 TRAPPC-Trs85: ER-Golg 62.5 1.2E+02 0.0026 27.3 11.2 102 85-197 210-329 (414)
422 PF07219 HemY_N: HemY protein 62.1 48 0.001 23.5 6.7 39 77-115 53-91 (108)
423 KOG0546 HSP90 co-chaperone CPR 62.0 7.5 0.00016 33.9 2.7 47 133-179 308-354 (372)
424 PF01239 PPTA: Protein prenylt 61.2 18 0.0004 19.0 3.4 26 154-179 3-28 (31)
425 KOG1118 Lysophosphatidic acid 60.5 96 0.0021 26.7 8.8 47 153-199 91-137 (366)
426 KOG0276 Vesicle coat complex C 60.0 37 0.0008 32.0 6.9 71 142-217 645-723 (794)
427 cd02656 MIT MIT: domain contai 59.5 31 0.00068 22.5 5.0 15 181-195 19-33 (75)
428 PF07219 HemY_N: HemY protein 59.4 38 0.00082 24.1 5.7 47 137-183 62-108 (108)
429 KOG0530 Protein farnesyltransf 59.0 77 0.0017 26.8 7.9 86 99-201 94-180 (318)
430 cd07642 BAR_ASAP2 The Bin/Amph 58.9 98 0.0021 25.2 10.3 98 134-231 25-125 (215)
431 KOG4459 Membrane-associated pr 57.8 85 0.0018 28.5 8.5 125 83-210 31-175 (471)
432 KOG1463 26S proteasome regulat 57.6 1.3E+02 0.0029 26.4 10.1 116 87-214 213-330 (411)
433 KOG0890 Protein kinase of the 57.5 47 0.001 36.3 7.9 93 83-175 1702-1796(2382)
434 PF09797 NatB_MDM20: N-acetylt 57.2 65 0.0014 28.3 8.0 47 147-193 196-242 (365)
435 TIGR02710 CRISPR-associated pr 56.9 1.5E+02 0.0032 26.5 11.9 61 86-158 133-195 (380)
436 KOG1464 COP9 signalosome, subu 56.6 1.3E+02 0.0027 25.7 8.9 104 89-197 151-260 (440)
437 COG5091 SGT1 Suppressor of G2 56.6 45 0.00097 28.2 6.2 103 92-201 4-112 (368)
438 KOG3616 Selective LIM binding 56.5 41 0.00089 32.7 6.7 96 90-195 713-818 (1636)
439 PF01535 PPR: PPR repeat; Int 56.0 23 0.0005 17.9 3.2 20 175-194 7-26 (31)
440 PRK11619 lytic murein transgly 55.8 1.2E+02 0.0025 29.3 9.8 56 141-196 319-374 (644)
441 COG5191 Uncharacterized conser 55.8 32 0.00068 29.8 5.4 100 158-261 97-197 (435)
442 KOG4563 Cell cycle-regulated h 55.3 77 0.0017 28.0 7.7 68 78-154 36-103 (400)
443 KOG2114 Vacuolar assembly/sort 54.6 80 0.0017 31.0 8.3 33 83-115 368-400 (933)
444 PF04053 Coatomer_WDAD: Coatom 54.0 1.8E+02 0.0038 26.6 11.3 46 145-195 329-374 (443)
445 TIGR00985 3a0801s04tom mitocho 53.7 47 0.001 25.3 5.5 42 75-116 82-124 (148)
446 KOG1914 mRNA cleavage and poly 53.3 1.6E+02 0.0034 27.7 9.6 76 136-212 22-97 (656)
447 KOG0739 AAA+-type ATPase [Post 52.6 65 0.0014 27.9 6.7 36 80-115 7-42 (439)
448 PF13812 PPR_3: Pentatricopept 52.3 25 0.00053 18.3 3.0 24 137-160 4-27 (34)
449 COG5159 RPN6 26S proteasome re 51.3 1.3E+02 0.0028 25.9 8.2 101 87-196 7-153 (421)
450 PF02064 MAS20: MAS20 protein 50.4 49 0.0011 24.2 5.1 28 174-201 69-96 (121)
451 cd00280 TRFH Telomeric Repeat 50.3 36 0.00077 27.0 4.5 61 150-211 85-153 (200)
452 KOG1914 mRNA cleavage and poly 49.8 2.2E+02 0.0048 26.8 10.0 71 158-230 10-80 (656)
453 PF08969 USP8_dimer: USP8 dime 49.2 78 0.0017 22.7 6.0 43 71-113 26-68 (115)
454 KOG4056 Translocase of outer m 48.9 85 0.0018 23.5 6.0 43 74-116 72-114 (143)
455 KOG0985 Vesicle coat protein c 47.5 98 0.0021 31.5 7.8 32 78-109 1099-1130(1666)
456 KOG2034 Vacuolar sorting prote 47.4 81 0.0018 31.1 7.2 52 139-194 363-415 (911)
457 KOG2041 WD40 repeat protein [G 46.9 84 0.0018 30.4 7.1 65 134-210 796-860 (1189)
458 KOG0890 Protein kinase of the 45.7 2.1E+02 0.0046 31.8 10.4 109 82-209 1669-1796(2382)
459 TIGR00756 PPR pentatricopeptid 45.6 43 0.00094 17.2 3.9 24 173-196 5-28 (35)
460 PF03745 DUF309: Domain of unk 44.5 80 0.0017 20.0 6.5 59 87-156 3-61 (62)
461 KOG3783 Uncharacterized conser 42.8 2.1E+02 0.0046 26.7 8.8 77 87-179 271-349 (546)
462 PF08311 Mad3_BUB1_I: Mad3/BUB 41.3 1.4E+02 0.003 21.8 10.6 85 97-195 40-126 (126)
463 PF13041 PPR_2: PPR repeat fam 41.0 74 0.0016 18.5 5.9 27 170-196 5-31 (50)
464 KOG2460 Signal recognition par 39.9 1.1E+02 0.0023 28.5 6.4 25 137-161 425-449 (593)
465 KOG1258 mRNA processing protei 39.6 3.4E+02 0.0073 25.7 13.8 30 86-115 300-329 (577)
466 PF11846 DUF3366: Domain of un 38.9 81 0.0018 24.8 5.2 30 136-165 146-175 (193)
467 COG4259 Uncharacterized protei 36.2 1.2E+02 0.0027 21.5 5.0 42 168-209 72-113 (121)
468 PF07163 Pex26: Pex26 protein; 35.8 2.8E+02 0.0061 23.7 10.7 114 84-201 36-150 (309)
469 KOG1463 26S proteasome regulat 35.1 1.3E+02 0.0027 26.6 5.9 98 89-197 134-238 (411)
470 cd00280 TRFH Telomeric Repeat 35.0 2.3E+02 0.0051 22.6 6.9 45 139-184 116-160 (200)
471 KOG3677 RNA polymerase I-assoc 34.6 56 0.0012 29.4 3.8 57 137-197 238-301 (525)
472 PF14689 SPOB_a: Sensor_kinase 34.1 89 0.0019 19.7 3.8 28 168-195 23-50 (62)
473 COG5600 Transcription-associat 34.0 1.4E+02 0.0029 26.6 6.0 62 139-200 182-252 (413)
474 COG2015 Alkyl sulfatase and re 33.9 79 0.0017 29.1 4.7 44 139-182 457-500 (655)
475 COG5107 RNA14 Pre-mRNA 3'-end 32.8 1.7E+02 0.0037 26.9 6.5 58 136-196 304-361 (660)
476 PF10938 YfdX: YfdX protein; 32.4 2.3E+02 0.005 21.6 6.9 73 80-161 72-144 (155)
477 PF15469 Sec5: Exocyst complex 32.2 1.6E+02 0.0034 22.9 5.9 21 179-199 97-117 (182)
478 PRK15326 type III secretion sy 32.1 1.6E+02 0.0035 19.8 5.7 30 182-211 21-50 (80)
479 PF08626 TRAPPC9-Trs120: Trans 31.3 59 0.0013 33.7 4.0 36 80-115 239-274 (1185)
480 KOG4056 Translocase of outer m 30.7 1.4E+02 0.0031 22.4 4.8 35 173-207 86-120 (143)
481 KOG3616 Selective LIM binding 30.3 4.6E+02 0.0099 26.0 9.1 19 142-160 799-817 (1636)
482 PF02184 HAT: HAT (Half-A-TPR) 29.7 1E+02 0.0022 16.8 3.3 22 183-204 2-23 (32)
483 KOG2758 Translation initiation 29.3 1.8E+02 0.0039 25.4 5.9 65 133-197 128-196 (432)
484 PF04010 DUF357: Protein of un 29.0 1.8E+02 0.0038 19.3 5.4 40 73-112 25-64 (75)
485 KOG0276 Vesicle coat complex C 28.3 4.3E+02 0.0093 25.4 8.4 25 137-161 669-693 (794)
486 PF04348 LppC: LppC putative l 28.2 19 0.00042 33.6 0.0 104 80-199 21-129 (536)
487 KOG2997 F-box protein FBX9 [Ge 27.5 1.4E+02 0.0031 25.9 4.9 35 170-204 21-55 (366)
488 PHA02537 M terminase endonucle 26.6 44 0.00094 27.5 1.8 37 130-166 165-210 (230)
489 PF00244 14-3-3: 14-3-3 protei 26.5 3.6E+02 0.0079 22.1 7.9 75 137-211 4-82 (236)
490 COG5159 RPN6 26S proteasome re 26.1 4.3E+02 0.0094 22.9 7.6 69 130-198 121-195 (421)
491 KOG4563 Cell cycle-regulated h 25.8 95 0.0021 27.4 3.7 57 137-193 44-108 (400)
492 PF00244 14-3-3: 14-3-3 protei 25.8 3.8E+02 0.0082 22.0 7.7 43 171-213 4-47 (236)
493 PF10366 Vps39_1: Vacuolar sor 25.8 95 0.0021 22.1 3.2 35 77-111 33-67 (108)
494 TIGR00985 3a0801s04tom mitocho 25.6 1.9E+02 0.0042 22.0 4.9 33 173-205 95-128 (148)
495 PRK15490 Vi polysaccharide bio 25.4 3.4E+02 0.0073 25.8 7.4 54 137-192 45-98 (578)
496 KOG2581 26S proteasome regulat 25.3 5.2E+02 0.011 23.5 10.0 36 81-116 245-280 (493)
497 PF12753 Nro1: Nuclear pore co 25.2 2E+02 0.0043 25.8 5.6 33 150-184 334-366 (404)
498 PF06051 DUF928: Domain of Unk 23.9 2.8E+02 0.006 22.0 5.8 32 138-169 135-166 (189)
499 PF12309 KBP_C: KIF-1 binding 23.5 1.5E+02 0.0033 26.3 4.7 36 168-203 300-344 (371)
500 KOG1258 mRNA processing protei 23.3 6.5E+02 0.014 23.9 14.0 98 140-237 372-475 (577)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-44 Score=302.85 Aligned_cols=256 Identities=40% Similarity=0.557 Sum_probs=230.8
Q ss_pred cCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc-ccccCCCCCCCCHHHHHH
Q 024531 3 LGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD-ETKEGKARSDMTVEERIG 81 (266)
Q Consensus 3 lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~ 81 (266)
+|++.+||.|||.||+.|++||+|.|+|+|.|+||..|. ++|.|||++++.|+|+|+++. ..++ .|.+..++++.
T Consensus 131 ~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~-~~p~IPPnA~l~yEVeL~~f~~~~~~---s~~~~~~e~l~ 206 (397)
T KOG0543|consen 131 EGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGG-EPPLIPPNATLLYEVELLDFELKEDE---SWKMFAEERLE 206 (397)
T ss_pred cCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCC-CCCCCCCCceEEEEEEEEeeecCccc---ccccchHHHHH
Confidence 677558999999999999999999999999999994333 488999999999999999998 6655 89999999999
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.+...++.||.+|+.|+|..|...|.+|+...+..... ..+...+..++...+++|+|.||+++++|..|+..|+++|
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~--~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF--DEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC--CHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865443 3356667788899999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc--
Q 024531 162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK-- 239 (266)
Q Consensus 162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~-- 239 (266)
+++|+|.+|+||+|.|+..+|+|+.|+.+|+++++++|+|.++...|..|.++.++++.+++++|.+||+........
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~ 364 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTK 364 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986655444
Q ss_pred -chhHHHhHHHHHHHHHHHhhhhccc
Q 024531 240 -KNWLIIFWQLLVSLVLGLFKRKRVK 264 (266)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (266)
.+|....|+|..+.....+...+.+
T Consensus 365 s~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (397)
T KOG0543|consen 365 SEAALEDKPKEQEGLTKDKDGTARLK 390 (397)
T ss_pred cchhcccCccchhcchhhhcchhhhh
Confidence 7777888999888887776665543
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-26 Score=183.84 Aligned_cols=230 Identities=25% Similarity=0.343 Sum_probs=191.1
Q ss_pred CccCCCCccchhHHHHhhcCCCCcEEEEEEecCcc--c-------CC--CCCCCC---------------CC--------
Q 024531 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELG--Y-------GK--EGSFSF---------------PN-------- 46 (266)
Q Consensus 1 ~~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~--~-------~~--~g~~~~---------------~~-------- 46 (266)
|++|.-+ -.+-+|.++.+|..+|++.|.++..+. | .+ .|..+. ..
T Consensus 61 iiiGkkF-kL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDe 139 (329)
T KOG0545|consen 61 IIIGKKF-KLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDE 139 (329)
T ss_pred Eeecccc-ccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHH
Confidence 4678775 578899999999999999999874321 1 00 011100 00
Q ss_pred -CCCCCceEEEEEEeeccccccC-CCCCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchh
Q 024531 47 -VSPMADLVYEVVLIGFDETKEG-KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK 124 (266)
Q Consensus 47 -ip~~~~~~~~i~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~ 124 (266)
....+++.|.++|..+..+..+ ...|.|+.+++...+..+++.||.+|+.|+|.+|...|..||....+-...+.+++
T Consensus 140 L~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e 219 (329)
T KOG0545|consen 140 LQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE 219 (329)
T ss_pred HhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 1223689999999999887776 56899999999999999999999999999999999999999987655333333332
Q ss_pred -HHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH
Q 024531 125 -YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DK 202 (266)
Q Consensus 125 -~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~ 202 (266)
++-++..+..+++.|.++|++..|+|.+++++|..+|..+|.|.+|||++|.++....+-++|.++|.++|+++|. -+
T Consensus 220 ~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 220 PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 4567778888899999999999999999999999999999999999999999999999999999999999999997 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 203 SIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
.+.++|..+..++.+..+..+-.+++||+
T Consensus 300 vVsrElr~le~r~~ek~~edr~~~~kmfs 328 (329)
T KOG0545|consen 300 VVSRELRLLENRMAEKQEEDRLRCRKMFS 328 (329)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 67788999988888888888889999996
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.1e-21 Score=160.69 Aligned_cols=127 Identities=31% Similarity=0.402 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531 75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 154 (266)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~ 154 (266)
+..+....++.++.+|+.+++.++|.+|+..|.+||.++|.++.+ |.|+|.+|.++|.++.|+
T Consensus 73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy-----------------ycNRAAAy~~Lg~~~~AV 135 (304)
T KOG0553|consen 73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY-----------------YCNRAAAYSKLGEYEDAV 135 (304)
T ss_pred ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH-----------------HHHHHHHHHHhcchHHHH
Confidence 333677889999999999999999999999999999999998874 999999999999999999
Q ss_pred HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531 155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 218 (266)
Q Consensus 155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 218 (266)
++|..+|.+||.+.++|.++|.+|..+|+|.+|++.|+++|+++|+|+..+..|......+++.
T Consensus 136 kDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 136 KDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999876665554
No 4
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=4.7e-19 Score=137.21 Aligned_cols=134 Identities=29% Similarity=0.355 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531 78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 157 (266)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~ 157 (266)
.....+..++..||.+|.+|+|.+|...|+.||.++|..+. +....+|.|+|.|+++++.|+.|+..|
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~------------e~rsIly~Nraaa~iKl~k~e~aI~dc 157 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST------------EERSILYSNRAAALIKLRKWESAIEDC 157 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH------------HHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence 34678899999999999999999999999999999998543 335558999999999999999999999
Q ss_pred HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531 158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK 223 (266)
Q Consensus 158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 223 (266)
.++|+++|.+.+|+.++|.+|.++..|++|+.+|.++++++|.+.+++..+.++-....+.+++.+
T Consensus 158 sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 158 SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK 223 (271)
T ss_pred HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999776666555544
No 5
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.1e-19 Score=148.55 Aligned_cols=160 Identities=24% Similarity=0.279 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH
Q 024531 76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 155 (266)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~ 155 (266)
....++.....+..||..|++|.|..|.+.|..+|.++|+... ..+.+|.|+|.+..++|+..+|+.
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-------------~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-------------TNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-------------hhHHHHHHhHhhhcccCCchhhhh
Confidence 3445788889999999999999999999999999999998533 366789999999999999999999
Q ss_pred HHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531 156 QCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 235 (266)
Q Consensus 156 ~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~ 235 (266)
+|+.|+.+||..++++.++|.||..+++|++|+++|++|++++.+ .+.+..+. +.+....+.++++|++++++...
T Consensus 309 dc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~---~A~~aLkkSkRkd~ykilGi~~~ 384 (486)
T KOG0550|consen 309 DCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR---EAQLALKKSKRKDWYKILGISRN 384 (486)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH---HHHHHHHHhhhhhHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999887 77776666 44556666788899999999887
Q ss_pred Cccc---chhHHHhHHHHHH
Q 024531 236 PKQK---KNWLIIFWQLLVS 252 (266)
Q Consensus 236 ~~~~---~~~~~~~~~~~~~ 252 (266)
.+.. ++|++.++.|+..
T Consensus 385 as~~eikkayrk~AL~~Hpd 404 (486)
T KOG0550|consen 385 ASDDEIKKAYRKLALVHHPD 404 (486)
T ss_pred cccchhhhHHHHHHHHhCCC
Confidence 7655 9999999888764
No 6
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.1e-17 Score=142.03 Aligned_cols=119 Identities=29% Similarity=0.380 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
++.+...+..|+.+|+.|+|..|+.+|+++|..+|++.. +|.|+|.||.+++.+..|+.+|+.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~-----------------lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR-----------------LYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH-----------------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445777788899999999999999999999999999776 699999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
+++++|+++++|+|.|.|+..+.+|++|++.|+.+++++|++.++...+.+|...+
T Consensus 418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999997765
No 7
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=1.2e-15 Score=116.62 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=105.6
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
.+...|..++..|+|++|+..|.+++...|.+.. ++.++|.++..+|++++|+..|++++.++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR-----------------AHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999766 69999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
|+++.+++++|.++..+|++++|+..|++++.++|+++......+.+...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987777654433
No 8
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6e-16 Score=134.02 Aligned_cols=129 Identities=31% Similarity=0.414 Sum_probs=111.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHH
Q 024531 72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE 151 (266)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~ 151 (266)
-.++.+++.+.+..++.+||.+|.+|+|++||++|++||+++|+.+.+ |.|++.||..+|+|+
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF-----------------YsNraAcY~~lgd~~ 166 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF-----------------YSNRAACYESLGDWE 166 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh-----------------hhhHHHHHHHHhhHH
Confidence 456778889999999999999999999999999999999999997663 999999999999999
Q ss_pred HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHH
Q 024531 152 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-PEDKSIARELRLLAEHEKA 217 (266)
Q Consensus 152 ~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~ 217 (266)
+.+++|.++|+++|++.++++|++.++..+|++++|+.+..-..-++ -.|..+.-.+.++.+.+..
T Consensus 167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~ 233 (606)
T KOG0547|consen 167 KVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM 233 (606)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876433322 2466666666666544444
No 9
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.68 E-value=1.1e-15 Score=133.65 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=110.7
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
..+...|+.+|..|+|..|+..|.++|.+.|.+.. ++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~-----------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE-----------------LYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999765 6999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531 164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 218 (266)
Q Consensus 164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 218 (266)
+|+++.+++++|.+++.+|+|++|+..|++++.++|+++.+...+..|...++..
T Consensus 66 ~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 66 DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999887776543
No 10
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.67 E-value=4.1e-16 Score=129.99 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531 78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 157 (266)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~ 157 (266)
.++..+....+-+......++|.+++..+++.++..|....+ ....+.-++.|+..-+.+.+|+..|
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-------------r~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-------------RYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-------------eeeeeheeeecccccCCHHHHHHHH
Confidence 445556666667778888899999999999999999885432 3334667899999999999999999
Q ss_pred HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
+++|.++|++..++..++.+|+--..|+.|+.+|++|++.+|+|..++..+... .+-..+..+++|+|++++.+..+
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A---krlkkqs~kRDYYKILGVkRnAs 407 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA---KRLKKQSGKRDYYKILGVKRNAS 407 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH---HHHHHHhccchHHHHhhhccccc
Confidence 999999999999999999999999999999999999999999999999988865 34444577889999999999887
Q ss_pred cc---chhHHHhHHHHHHHHHH
Q 024531 238 QK---KNWLIIFWQLLVSLVLG 256 (266)
Q Consensus 238 ~~---~~~~~~~~~~~~~~~~~ 256 (266)
.. ++||+.+.+|+...|..
T Consensus 408 KqEI~KAYRKlAqkWHPDNFqd 429 (504)
T KOG0624|consen 408 KQEITKAYRKLAQKWHPDNFQD 429 (504)
T ss_pred HHHHHHHHHHHHHhcCCccccC
Confidence 77 99999999999988764
No 11
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.65 E-value=9.2e-16 Score=127.95 Aligned_cols=125 Identities=30% Similarity=0.394 Sum_probs=115.3
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHH
Q 024531 72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE 151 (266)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~ 151 (266)
.+.-.++.+.....++++||.||++|.|++|+..|.+++...|.++. .+.|+|.+|++++.|.
T Consensus 86 vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV-----------------~~~NRA~AYlk~K~FA 148 (536)
T KOG4648|consen 86 VDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV-----------------YHINRALAYLKQKSFA 148 (536)
T ss_pred ccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc-----------------chhhHHHHHHHHHHHH
Confidence 33455677888889999999999999999999999999999998766 5999999999999999
Q ss_pred HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531 152 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 213 (266)
Q Consensus 152 ~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 213 (266)
.|..+|+.|+.+|..+.+||-++|.+...+|+..+|.++++.+|+++|++.+.++.++.+..
T Consensus 149 ~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 149 QAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999888888777754
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=2.8e-14 Score=133.79 Aligned_cols=136 Identities=25% Similarity=0.267 Sum_probs=117.2
Q ss_pred CCCCCCCceEEEEEEeeccccccCCCCCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchh
Q 024531 45 PNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK 124 (266)
Q Consensus 45 ~~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~ 124 (266)
+..|++..+.....+..+... ..+.++.+++...+..+++.|+.+|+.|+|++|+..|.++|.+.|+ ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~------ 161 (615)
T TIGR00990 93 STAPKNAPVEPADELPEIDES----SVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PV------ 161 (615)
T ss_pred CCCCCCCCCCccccccccchh----hcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hH------
Confidence 345666666655555433322 2688899999999999999999999999999999999999999986 22
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 125 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 125 ~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
.+.|+|.||.++|+|++|+.+|+++++++|++.++++++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 162 -----------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 162 -----------YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred -----------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 4899999999999999999999999999999999999999999999999999999999988877543
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.59 E-value=7.9e-14 Score=105.10 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
+.........|..++..|++++|+..|++++...|.+.. ++.++|.++...|++++|+..+++
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR-----------------YWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566789999999999999999999999999998665 689999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 213 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 213 (266)
++..+|.++..++.+|.++..+|++++|+..|+++++++|++.........+..
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887766665543
No 14
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-14 Score=127.06 Aligned_cols=113 Identities=23% Similarity=0.248 Sum_probs=107.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+..+++.||..|..|+|+.|+.+|..+|.++|.+.. +|.|++.||..+|+|.+|+.+..+.++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv-----------------lySnrsaa~a~~~~~~~al~da~k~~~ 64 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV-----------------LYSNRSAAYASLGSYEKALKDATKTRR 64 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc-----------------hhcchHHHHHHHhhHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999655 799999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 212 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 212 (266)
++|+.+++|.++|.+++.+|+|++|+..|.+.|+.+|+|+.....|....
T Consensus 65 l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 65 LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999999999999999999999998876
No 15
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.58 E-value=1.2e-13 Score=104.70 Aligned_cols=106 Identities=11% Similarity=0.091 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
.+..+.++..|..++..|++++|...|+-...++|.+..+ ++|+|.|+..+|+|.+|+..|.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y-----------------~~gLG~~~Q~~g~~~~AI~aY~~ 94 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY-----------------WFRLGECCQAQKHWGEAIYAYGR 94 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-----------------HHHHHHHHHHHhhHHHHHHHHHH
Confidence 4557888999999999999999999999999999998774 99999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
++.++|+++.++++.|.|++.+|+.+.|.+.|+.++...-+++
T Consensus 95 A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 95 AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999999999999999999999999999999875443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.58 E-value=9.5e-15 Score=129.91 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531 79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158 (266)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~ 158 (266)
.+.-++.+.++|+++-..+.|++|+..|.+|+.+.|+... ++-|+|.+|..+|..+-||..|+
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~-----------------a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV-----------------AHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh-----------------hccceEEEEeccccHHHHHHHHH
Confidence 3556778889999999999999999999999999998554 68899999999999999999999
Q ss_pred hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531 159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 238 (266)
Q Consensus 159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~ 238 (266)
++|+++|+.+.||.++|.++-..|+..+|+.+|.+||.+.|+++++..+|+.++..+...+. ...+|.+.|.+.++...
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~-A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE-ATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH-HHHHHHHHHhhChhhhh
Confidence 99999999999999999999999999999999999999999999999999988777766654 44568888888888776
Q ss_pred c
Q 024531 239 K 239 (266)
Q Consensus 239 ~ 239 (266)
.
T Consensus 390 a 390 (966)
T KOG4626|consen 390 A 390 (966)
T ss_pred h
Confidence 6
No 17
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.53 E-value=3.7e-13 Score=106.92 Aligned_cols=156 Identities=21% Similarity=0.122 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531 79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158 (266)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~ 158 (266)
.-..+....++|..+++.|++..|...+.+||+.+|+... ++..+|..|.+.|+.+.|-+.|+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~-----------------a~~~~A~~Yq~~Ge~~~A~e~Yr 93 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL-----------------AHLVRAHYYQKLGENDLADESYR 93 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-----------------HHHHHHHHHHHcCChhhHHHHHH
Confidence 3455777889999999999999999999999999998655 35555555555555555555555
Q ss_pred hHhcCCCCc------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 159 LVLGEDENN------------------------------------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 159 ~al~l~p~~------------------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
+|+.++|++ +..+-++|.|..++|+++.|..+|+++++++|+++
T Consensus 94 kAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 94 KALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred HHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 555555543 56788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchhHHHhHHHHHHH
Q 024531 203 SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSL 253 (266)
Q Consensus 203 ~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (266)
.....+...+....++-.+ +.|...+......+..+.|+.|...-.+|-
T Consensus 174 ~~~l~~a~~~~~~~~y~~A--r~~~~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 174 PALLELARLHYKAGDYAPA--RLYLERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred hHHHHHHHHHHhcccchHH--HHHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence 9888888776555554332 334444555445666688888877666653
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.52 E-value=4.8e-13 Score=114.40 Aligned_cols=106 Identities=20% Similarity=0.093 Sum_probs=100.6
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
..+..+.++|..+...|++..|+..|++++.+.|+... +++++|.++...|++++|+..++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD-----------------AYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34677899999999999999999999999999999765 6999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531 161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 203 (266)
Q Consensus 161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 203 (266)
++++|++..+++++|.++...|++++|+.+|++++.++|+++.
T Consensus 125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999974
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.51 E-value=2.1e-13 Score=121.45 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-chh-HHHH-----H----------HHhhhhhhhhHHH
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGK-YRDM-----A----------LAVKNPCHLNMAA 142 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~~~-~~~~-----~----------~~l~~~~~~n~a~ 142 (266)
+.-...+.++|+.+-..|+..+|...|++||.++|...+... .+. ..++ . ..-...+++|+|.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 344566777777777778888888888888888876543311 011 1110 0 0112457899999
Q ss_pred HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 222 (266)
Q Consensus 143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 222 (266)
+|.++|++++|+.+|+.||.++|....++.++|..|-.+|+.+.|+.+|.+|+.++|.-.++..+|+.+++--+...++-
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777776555
Q ss_pred HHHHhcccCCCCCCccc
Q 024531 223 KEIYKGIFGPRPEPKQK 239 (266)
Q Consensus 223 ~~~~~k~~~~~~~~~~~ 239 (266)
.. |+..+-..|+....
T Consensus 477 ~s-Y~~aLklkPDfpdA 492 (966)
T KOG4626|consen 477 QS-YRTALKLKPDFPDA 492 (966)
T ss_pred HH-HHHHHccCCCCchh
Confidence 54 78888777765554
No 20
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.4e-13 Score=109.81 Aligned_cols=109 Identities=27% Similarity=0.299 Sum_probs=96.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
+.+..+++.||.+|+..+|..|+..|.++|...-.+.+ +.+.+|.|+|.|.+-+|+|..|+.+|.+|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-------------lnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-------------LNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999998665533 47779999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
+.++|.+.++++|-|.|+..+..+++|..+++..+.++-+++
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999999999999999999999998888777777666654433
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.49 E-value=8.8e-13 Score=123.74 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=119.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHHH---------HHhhhhhhhhHHHH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMA---------LAVKNPCHLNMAAC 143 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~---------~~l~~~~~~n~a~~ 143 (266)
..+..+...|..++..|++++|+..|++++..+|.....- ..+...+-. ..-...+++++|.+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455677889999999999999999999999998754220 011111111 01124578889999
Q ss_pred HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531 144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK 223 (266)
Q Consensus 144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 223 (266)
+..+|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++...|+++.+...++.+...+++..++ .
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A-~ 487 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA-I 487 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999988888887777766544 4
Q ss_pred HHHhcccCCCCCCc
Q 024531 224 EIYKGIFGPRPEPK 237 (266)
Q Consensus 224 ~~~~k~~~~~~~~~ 237 (266)
..|.+.+...+...
T Consensus 488 ~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 488 EKFDTAIELEKETK 501 (615)
T ss_pred HHHHHHHhcCCccc
Confidence 45788777665533
No 22
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.47 E-value=9e-13 Score=105.97 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHH-HHhhC--HHHHHHH
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL-LKLKR--YEEAIGQ 156 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~-~~~~~--~~~A~~~ 156 (266)
+...+.+...|..+...|+++.|+..|.+++.+.|++.. ++.++|.++ ...|+ +++|...
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~-----------------~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE-----------------LYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhcCCCCcHHHHHH
Confidence 455667888899999999999999999999999998766 588999875 67777 5999999
Q ss_pred HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
++++++.+|+++.+++.+|.+++.+|+|++|+..|+++++++|.+.+-...+..
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999976655544433
No 23
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.46 E-value=1.2e-12 Score=99.89 Aligned_cols=114 Identities=6% Similarity=-0.077 Sum_probs=100.6
Q ss_pred HHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC
Q 024531 103 MQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG 182 (266)
Q Consensus 103 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 182 (266)
...|.++++++|+. +.++|.++...|++++|+..|++++.++|.+..+++.+|.++..+|
T Consensus 13 ~~~~~~al~~~p~~--------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 13 EDILKQLLSVDPET--------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHcCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 46788899998873 5578999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 183 QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 183 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
++++|+..|++++.++|+++.++..++.+....++..++... |.+.+...+...
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~-~~~Al~~~p~~~ 126 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA-FQTAIKMSYADA 126 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCh
Confidence 999999999999999999999999999998888777665555 777776655433
No 24
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=119.62 Aligned_cols=121 Identities=25% Similarity=0.307 Sum_probs=113.9
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.++.+..+++.+|..++|+.|+..|.+||+++|+...+ +.|++.++++.+++..|+.++.+|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~-----------------~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY-----------------FANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee-----------------echhhhhheeechhhhHHHHHHhhh
Confidence 46778899999999999999999999999999997763 8899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024531 162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY 219 (266)
Q Consensus 162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 219 (266)
+++|...++|+++|.+++.++++.+|..+|+....+.|+++.+.+.+..|.....++.
T Consensus 66 e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 66 ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999987766643
No 25
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.44 E-value=2.8e-12 Score=94.02 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=99.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
.+.++..|..++..|++++|+..|.+++...|++.. ...+++.+|.++.+.|+++.|+..+..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY--------------APNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 356789999999999999999999999999887432 122688999999999999999999999999
Q ss_pred CCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531 163 EDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209 (266)
Q Consensus 163 l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 209 (266)
.+|++ +.+++.+|.++..+|++++|...+++++...|+++.+...+.
T Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 68 KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 99885 678999999999999999999999999999999987765544
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=8.5e-13 Score=118.37 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=96.6
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
...+.+...||.+--+++++.|++.|++|+.++|...- +|..+|.=+....+++.|..+|+.|
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-----------------ayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-----------------AYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-----------------hhhhcCChhhhhHHHHhHHHHHHhh
Confidence 44667788899999999999999999999999997433 4666666666666777777777777
Q ss_pred hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531 161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 234 (266)
Q Consensus 161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~ 234 (266)
|..+|.+..|||-+|.+|.++++++.|.-.|++|++++|.|..+...++....+.++.+++-. +|.+++-..+
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~-~~~~A~~ld~ 554 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ-LYEKAIHLDP 554 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH-HHHHHHhcCC
Confidence 777777777777777777777777777777777777777776666666666555555544433 3455554433
No 27
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1e-12 Score=104.78 Aligned_cols=115 Identities=28% Similarity=0.308 Sum_probs=102.9
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
..+..+++.|+.+|....|..|+..|.++|...|....+ +.|+|.||+++++|+.+..+|.+|
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y-----------------~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY-----------------YTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh-----------------hhhHHHHHHHhhhhhhhhhhHHHH
Confidence 457889999999999999999999999999999997764 899999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHH
Q 024531 161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-----DKSIARELRLLA 212 (266)
Q Consensus 161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~l~ 212 (266)
+.++|+..+++|.+|.+......|++|+..++++..+.-. -.++...|..++
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999999776322 245666666553
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.38 E-value=1.3e-12 Score=86.81 Aligned_cols=64 Identities=34% Similarity=0.440 Sum_probs=62.6
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAP 199 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p 199 (266)
++.++|.+++..|+|++|+.+|++++.++|+++.+++++|.++..+| ++++|+++|+++++++|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 68899999999999999999999999999999999999999999999 79999999999999998
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.38 E-value=2.1e-11 Score=118.41 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=91.8
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
++.++|.++.++|++++|+..+.+++.++|+++.+++++|.++..+|++++|+..|+++++++|+++.++..++.+....
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhcccCCCCCCccc
Q 024531 216 KAVYKKQKEIYKGIFGPRPEPKQK 239 (266)
Q Consensus 216 ~~~~~~~~~~~~k~~~~~~~~~~~ 239 (266)
++..++.. .|++.+...++....
T Consensus 691 Gd~~eA~~-~l~~Al~l~P~~a~i 713 (987)
T PRK09782 691 DDMAATQH-YARLVIDDIDNQALI 713 (987)
T ss_pred CCHHHHHH-HHHHHHhcCCCCchh
Confidence 88766655 478888877755443
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.37 E-value=1.8e-11 Score=118.97 Aligned_cols=131 Identities=6% Similarity=-0.055 Sum_probs=111.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...+...|..+.+.|++++|+..|.+++.+.|++.. ++.++|.++...|++++|+..++++++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~-----------------a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN-----------------YQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455667788888888888888888888888888655 699999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
++|+++.+++++|.++..+|++++|+..|++++.++|++..+......+..+....+...+. |...+.
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~-~~r~~~ 739 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE-VGRRWT 739 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH-HHHHhh
Confidence 99999999999999999999999999999999999999999998888876665555544443 344433
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3e-11 Score=104.64 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=105.5
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...+--.|-.+....+-..|+..|.+|++++|.+.. +++.+|++|--++...=|+-+|++|+.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR-----------------AWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR-----------------AWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH-----------------HHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 334444566666666666666666666666666554 688999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP 232 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~ 232 (266)
+.|+++..|-.+|.||.++++.++|+++|.+++.....+..+...|+.+++.++..+++..- |.+.+.+
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~-yek~v~~ 495 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY-YEKYVEV 495 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999888888898999998888887766554 6666653
No 32
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.36 E-value=1.2e-11 Score=103.57 Aligned_cols=115 Identities=18% Similarity=0.260 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
...++.+.+.|+.++.+|++..|+.+|..|++.+|++.. +++.+|.+|+.+|+-.-|+.++.+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~-----------------aifrRaT~yLAmGksk~al~Dl~r 97 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ-----------------AIFRRATVYLAMGKSKAALQDLSR 97 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH-----------------HHHHHHHHHhhhcCCccchhhHHH
Confidence 345778899999999999999999999999999999655 689999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
+|++.|+..-|...+|.+++++|++++|..+|..+|.-+|++.........+
T Consensus 98 VlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl 149 (504)
T KOG0624|consen 98 VLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL 149 (504)
T ss_pred HHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999765555444443
No 33
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.36 E-value=1.8e-11 Score=98.37 Aligned_cols=122 Identities=14% Similarity=0.042 Sum_probs=108.7
Q ss_pred hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531 96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG 175 (266)
Q Consensus 96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 175 (266)
.++.++++..+.+++...|++.. .+.++|.+|...|++++|+..|++++.++|+++.+++.+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~-----------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE-----------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALA 114 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56788999999999999999766 6999999999999999999999999999999999999999
Q ss_pred HHH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531 176 KAR-AELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 235 (266)
Q Consensus 176 ~~~-~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~ 235 (266)
.++ ...|+ +++|...++++++++|++..++..++......++..++... |++++...+.
T Consensus 115 ~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~-~~~aL~l~~~ 176 (198)
T PRK10370 115 TVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL-WQKVLDLNSP 176 (198)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCC
Confidence 985 67787 59999999999999999999999999998777777665555 7888876554
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.32 E-value=7.4e-11 Score=97.38 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=101.2
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
..+..+...|..++..|+|+.|+..|.+++...|.++. ...+++.+|.++...|++++|+..++++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY--------------AEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34678899999999999999999999999999998643 2236889999999999999999999999
Q ss_pred hcCCCCchH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531 161 LGEDENNVK---ALFRRGKARAEL--------GQTDAAREDFLKAGKFAPEDKSIARELR 209 (266)
Q Consensus 161 l~l~p~~~~---a~~~~g~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~~~l~ 209 (266)
++.+|+++. +++.+|.++... |++++|+..|++++..+|++..+...+.
T Consensus 97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 999998876 799999999987 8999999999999999999876654443
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=7.3e-12 Score=112.46 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=132.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH
Q 024531 71 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY 150 (266)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~ 150 (266)
.+..+....+..-++++-.|.+|.++++++.|.-+|++|+.++|.+.. +....|..+.++|+.
T Consensus 477 ~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv-----------------i~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 477 SFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV-----------------ILCHIGRIQHQLKRK 539 (638)
T ss_pred HHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh-----------------HHhhhhHHHHHhhhh
Confidence 444444555677889999999999999999999999999999999655 578899999999999
Q ss_pred HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531 151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~ 230 (266)
++|+..+++|+.+||.++-..|.+|.+++.+++|++|+..++..-++-|++..+...+++++++.++...+... |--+.
T Consensus 540 d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~-f~~A~ 618 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH-FSWAL 618 (638)
T ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh-hHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999888887766655 56666
Q ss_pred CCCCCCcc
Q 024531 231 GPRPEPKQ 238 (266)
Q Consensus 231 ~~~~~~~~ 238 (266)
+.+|...+
T Consensus 619 ~ldpkg~~ 626 (638)
T KOG1126|consen 619 DLDPKGAQ 626 (638)
T ss_pred cCCCccch
Confidence 66655443
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.6e-11 Score=103.50 Aligned_cols=124 Identities=18% Similarity=0.107 Sum_probs=116.1
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
||-+.-+++.+.|+..|++|+.++|.... ++..+|.-|+.+++...|+..|++|++++|.+..
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~-----------------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLS-----------------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhH-----------------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 88888899999999999999999999544 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
|||-+|++|.-++...=|+-+|++|+.+-|+|+.++..|+.|+..+.+..++.+. |++...
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC-ykrai~ 460 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC-YKRAIL 460 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH-HHHHHh
Confidence 9999999999999999999999999999999999999999999999999888887 455543
No 37
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.32 E-value=3e-11 Score=113.28 Aligned_cols=135 Identities=12% Similarity=0.112 Sum_probs=121.7
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
..++.++.+|....+.|.+++|...+..++++.|+... +..+++.++.+++++++|+..++++
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-----------------a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE-----------------AFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44677788999999999999999999999999999655 7999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531 161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR 233 (266)
Q Consensus 161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~ 233 (266)
+..+|++..+++.+|.++.++|+|++|+..|++++..+|+++.++-.++.+.+..++.+++... |++.+...
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~-~~~a~~~~ 218 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDV-LQAGLDAI 218 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999887777776655444 77776543
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=4.7e-11 Score=110.65 Aligned_cols=92 Identities=10% Similarity=-0.076 Sum_probs=47.5
Q ss_pred hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531 96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG 175 (266)
Q Consensus 96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 175 (266)
.+++++|+..+.++++++|++.. ++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 379 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQ-----------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG 379 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34455555555555555555433 3444555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531 176 KARAELGQTDAAREDFLKAGKFAPEDKSI 204 (266)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 204 (266)
.++..+|++++|+..|+++++++|.++.+
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence 55555555555555555555555554433
No 39
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.31 E-value=3.7e-11 Score=94.57 Aligned_cols=109 Identities=20% Similarity=0.160 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531 79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158 (266)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~ 158 (266)
....+..+...|..+...|++++|+..|.+++...|+... ...++.++|.++..+|++++|+..+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND--------------RSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch--------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566778899999999999999999999999998765321 12368999999999999999999999
Q ss_pred hHhcCCCCchHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q 024531 159 LVLGEDENNVKALFRRGKARAELGQ--------------TDAAREDFLKAGKFAPED 201 (266)
Q Consensus 159 ~al~l~p~~~~a~~~~g~~~~~~g~--------------~~~A~~~~~~al~l~p~~ 201 (266)
+++..+|.+..++..+|.++..+|+ +++|++.+++++.++|++
T Consensus 97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999999999998 678888888888888876
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=4.6e-11 Score=110.72 Aligned_cols=116 Identities=11% Similarity=-0.116 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 024531 99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR 178 (266)
Q Consensus 99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 178 (266)
+++|+..|+++++++|++.. +++++|.++...|++++|+..++++++++|.++.+++.++.++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISAD-----------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 67899999999999999765 6899999999999999999999999999999998888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531 179 AELGQTDAAREDFLKAGKFA-PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP 232 (266)
Q Consensus 179 ~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~ 232 (266)
+..|++++|+..+++++..+ |+++.++..++.+...+++..++... +.++...
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~-~~~~~~~ 470 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL-TKEISTQ 470 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH-HHHhhhc
Confidence 89999999999999999875 78898888899888777777665555 5666533
No 41
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.30 E-value=1.4e-11 Score=80.79 Aligned_cols=64 Identities=25% Similarity=0.381 Sum_probs=60.4
Q ss_pred hHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++.++|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999986
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=3.9e-11 Score=90.31 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=102.4
Q ss_pred HHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCC
Q 024531 104 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 183 (266)
Q Consensus 104 ~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 183 (266)
..|.+++...|+... ++..+|.++...|++.+|+..+++++..+|.++.+++++|.++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 66 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE-----------------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE 66 (135)
T ss_pred hhHHHHHcCChhhHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 468889999888544 588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531 184 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 238 (266)
Q Consensus 184 ~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~ 238 (266)
+++|...|++++.++|++......++.+....++..++.+ .|...+...+....
T Consensus 67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~ 120 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK-ALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccccch
Confidence 9999999999999999999999999999877776655544 47888776665443
No 43
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.29 E-value=5.7e-11 Score=82.00 Aligned_cols=99 Identities=32% Similarity=0.401 Sum_probs=90.4
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
.+...|..++..|++.+|+..+.+++...|.... ++.++|.++...+++++|+..+++++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD-----------------AYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3567899999999999999999999999887543 58899999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
|.+..+++.+|.++..+|++++|...+.+++..+|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999998874
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1.5e-10 Score=93.98 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=88.2
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC-
Q 024531 86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED- 164 (266)
Q Consensus 86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~- 164 (266)
+...|..++..|++++|+..|.+++...|... .++.++|.++...|++++|+..+.+++...
T Consensus 68 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 130 (234)
T TIGR02521 68 YLALALYYQQLGELEKAEDSFRRALTLNPNNG-----------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL 130 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 33444444444444444444444444444322 257788888888888888888888888753
Q ss_pred -CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531 165 -ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP 232 (266)
Q Consensus 165 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~ 232 (266)
|.....++.+|.++...|++++|...|.+++..+|++..+...+..+....++..++.. .+.+....
T Consensus 131 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~ 198 (234)
T TIGR02521 131 YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA-YLERYQQT 198 (234)
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 44566788888888888888888888888888888888888778877666666554443 35665554
No 45
>PRK15331 chaperone protein SicA; Provisional
Probab=99.28 E-value=1.3e-10 Score=88.70 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
.+..+..+..|-.+|+.|++++|...|+-...++|.+..+ ...+|.|+..+++|++|+..|..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y-----------------~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY-----------------TMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999988774 78999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 206 (266)
+..++++++...|..|.|+..+|+.+.|+.+|..++. .|.+..++.
T Consensus 97 A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 97 AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 9999999999999999999999999999999999998 566655544
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=8.4e-11 Score=102.51 Aligned_cols=108 Identities=21% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
...+..+.-.|..+|-.|++-.|...++++|.++|.... +|..+|.+|+..++..+-..+|++
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-----------------lyI~~a~~y~d~~~~~~~~~~F~~ 385 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-----------------LYIKRAAAYADENQSEKMWKDFNK 385 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-----------------HHHHHHHHHhhhhccHHHHHHHHH
Confidence 455888889999999999999999999999999998554 355555555555555555555555
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI 204 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 204 (266)
|..+||.|+..||.+|+.++-+++|++|+.+|+++++++|+|.-.
T Consensus 386 A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 386 AEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred HHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 555555555555555555555555555555555555555555433
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=8.1e-11 Score=100.67 Aligned_cols=125 Identities=14% Similarity=-0.008 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531 97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 176 (266)
Q Consensus 97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 176 (266)
++.+.++..+.++|...|-+... ....++++|.+|...|++++|+..|+++++++|+++.+++.+|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~-------------~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 106 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEE-------------RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGI 106 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35677888888888754432211 23369999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531 177 ARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 235 (266)
Q Consensus 177 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~ 235 (266)
++..+|++++|+..|+++++++|++..+...++.+....++..++.+ .+++.+...|.
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~~P~ 164 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQDDPN 164 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC
Confidence 99999999999999999999999999999999988766666655544 46676665444
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=2.5e-10 Score=92.60 Aligned_cols=136 Identities=21% Similarity=0.185 Sum_probs=110.8
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.+..+...|..++..|++++|+..|.+++...|.... ++..+|.++...|++++|+..+++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL-----------------AYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667788899999999999999999999998887544 58889999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531 162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA--PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 235 (266)
Q Consensus 162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~ 235 (266)
..+|.+..+++++|.++..+|++++|+..|++++... |........++.+....++..++. ..+.+.+...+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~ 167 (234)
T TIGR02521 93 TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE-KYLTRALQIDPQ 167 (234)
T ss_pred hhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcC
Confidence 9999999999999999999999999999999999854 445666777777766666655444 446666655443
No 49
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.5e-12 Score=85.20 Aligned_cols=58 Identities=33% Similarity=0.556 Sum_probs=54.2
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~ 62 (266)
.+|.+ +||.|+|.++.+|..||++..+|+|.|+||..|. +..||||+.+.|+++|..+
T Consensus 50 ~IGkg-eVIkGwdegv~qmsvGekakLti~pd~aYG~~G~--p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 50 KIGKG-EVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGH--PGGIPPNATLVFDVELLKV 107 (108)
T ss_pred EecCc-ceeechhhcchhccccccceeeeccccccCCCCC--CCccCCCcEEEEEEEEEec
Confidence 37888 8999999999999999999999999999999996 7789999999999999865
No 50
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.25 E-value=3.3e-11 Score=83.26 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=72.3
Q ss_pred hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531 96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG 175 (266)
Q Consensus 96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 175 (266)
+|+|+.|+..|.+++...|.+.. ...++++|.||++.|+|++|+..+++ +..+|.+...++.+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~---------------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN---------------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH---------------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChh---------------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHH
Confidence 68999999999999999995311 11467799999999999999999999 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 024531 176 KARAELGQTDAAREDFLKA 194 (266)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~a 194 (266)
.|+..+|+|++|+..|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 51
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.25 E-value=1.3e-10 Score=109.62 Aligned_cols=128 Identities=16% Similarity=0.076 Sum_probs=94.0
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHH----HHHHHHhHhcCC
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE----AIGQCSLVLGED 164 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~----A~~~~~~al~l~ 164 (266)
.|..++..|++++|+..|.+++...|++.. ++.++|.++...|++++ |+..|++++.++
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~-----------------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAA-----------------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 456667777788888888888777776544 57778888888887775 677888888888
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 234 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~ 234 (266)
|+++.++..+|.++..+|++++|+..+++++.++|+++.+...+..+....++..++... |.++....+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~-l~~al~~~P 349 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE-FVQLAREKG 349 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHhCc
Confidence 888888888888888888888888888888888888887777777776666666544443 566655433
No 52
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.23 E-value=2.6e-10 Score=89.35 Aligned_cols=109 Identities=20% Similarity=0.105 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
...+..+...|..++..|+|++|+..|.+++.+.|+... ...++.|+|.++...|++++|+..|.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~--------------~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD--------------RSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh--------------hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 346788899999999999999999999999998765322 222689999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q 024531 160 VLGEDENNVKALFRRGKARA-------ELGQTD-------AAREDFLKAGKFAPEDK 202 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~-------~~g~~~-------~A~~~~~~al~l~p~~~ 202 (266)
++.++|.+..++..+|.++. .+|+++ +|...|++++..+|++.
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999 777766 66666677888888653
No 53
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.23 E-value=1.7e-10 Score=108.87 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=98.3
Q ss_pred HHHHHHHhHHHHhhccHHH----HHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531 83 ADRRKMDGNALFKEEKLEE----AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~ 158 (266)
...+...|..++..|++++ |+..|.+++...|++.. ++.++|.++...|++++|+..++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR-----------------IVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 4455678888899999885 78999999999988654 57888888888888888888888
Q ss_pred hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531 159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP 232 (266)
Q Consensus 159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~ 232 (266)
+++.++|+++.+++.+|.++..+|++++|+..|++++..+|++..+...+..+....++..++. ..|.+.+..
T Consensus 309 ~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~-~~l~~al~~ 381 (656)
T PRK15174 309 QSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE-SVFEHYIQA 381 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH-HHHHHHHHh
Confidence 8888888888888888888888888888888888888888887665544444443333333322 234444433
No 54
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.22 E-value=2.3e-10 Score=92.80 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
......+...|...+..|+|..|+..+.++....|++.. +++.+|.+|.+.|+++.|...|.+
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~-----------------~~~~lgaaldq~Gr~~~Ar~ay~q 159 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE-----------------AWNLLGAALDQLGRFDEARRAYRQ 159 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh-----------------hhhHHHHHHHHccChhHHHHHHHH
Confidence 334455666999999999999999999999999999877 699999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK 223 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 223 (266)
++++.|+++.+..++|..+.-.|+++.|...+..+....+.+..+..+|..+-..+.....++.
T Consensus 160 Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 160 ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999999999999999999999999999999988899999999999777777655544
No 55
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=4.1e-11 Score=79.46 Aligned_cols=66 Identities=29% Similarity=0.349 Sum_probs=62.3
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHh
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVL 161 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al 161 (266)
+..+...|..++..|+|++|+..|.++++++|++.. +++++|.||..+| ++.+|+.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-----------------~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE-----------------AYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH-----------------HHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 678899999999999999999999999999999655 7999999999999 7999999999999
Q ss_pred cCCC
Q 024531 162 GEDE 165 (266)
Q Consensus 162 ~l~p 165 (266)
+++|
T Consensus 66 ~l~P 69 (69)
T PF13414_consen 66 KLDP 69 (69)
T ss_dssp HHST
T ss_pred HcCc
Confidence 9998
No 56
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=9.5e-11 Score=96.76 Aligned_cols=100 Identities=22% Similarity=0.206 Sum_probs=94.5
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
+-+-|.-+++.++|.+|+..|++||.++|.|+-.|+++|.+|.++|+|+.|+++++.|+.+||....++.-|...+-.+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHhcccCCCCCCc
Q 024531 217 AVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 217 ~~~~~~~~~~~k~~~~~~~~~ 237 (266)
+.+++.+. |+|.+.+.|.+.
T Consensus 164 k~~~A~~a-ykKaLeldP~Ne 183 (304)
T KOG0553|consen 164 KYEEAIEA-YKKALELDPDNE 183 (304)
T ss_pred cHHHHHHH-HHhhhccCCCcH
Confidence 99888877 999999988877
No 57
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.19 E-value=7e-10 Score=92.73 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=98.1
Q ss_pred HHHHHHhHHH-HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 84 DRRKMDGNAL-FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 84 ~~~~~~g~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...+..|..+ +..|+|++|+..|...+...|++.. ...+++.+|.+|+..|++++|+..|.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--------------QPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556777766 6679999999999999999998642 223789999999999999999999999998
Q ss_pred CCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 163 EDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 163 l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
..|++ +.+++.+|.++..+|++++|...|+++++..|++..+.....++
T Consensus 209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 88874 67899999999999999999999999999999988776555443
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.8e-10 Score=102.01 Aligned_cols=116 Identities=23% Similarity=0.241 Sum_probs=89.7
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
++.|.+.|..+.|.+|+..|+.++...+..... .....+...|+|.++.+++.+.+|+.+++++|.+.|.
T Consensus 418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e----------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNE----------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhheeehHhhhHHHHHHHHHHHHHhhhcccc----------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 444555555555555555555555332221000 0023456899999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531 167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 212 (266)
Q Consensus 167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 212 (266)
++..|..+|.+|..+|+++.|++.|.++|.++|+|.-+...|+...
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887777543
No 59
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.4e-10 Score=97.66 Aligned_cols=157 Identities=27% Similarity=0.344 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh-hchhH-HHHHHHhhhhhhhhHHHHHHHhhCHHH
Q 024531 75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-LFGKY-RDMALAVKNPCHLNMAACLLKLKRYEE 152 (266)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~n~a~~~~~~~~~~~ 152 (266)
.........+..++.|+..|+.++|..|...|.++++.....+... ..... ...........+.|++.|-++.+.+..
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~ 293 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG 293 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence 4445567788889999999999999999999999998765311110 01111 122445566678999999999999999
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
|+..+..+++.++...+++|+++.++..+.++++|++++..+....|++..+...+....+..+.++..++..+.+||.
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999898888888873
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.17 E-value=1.5e-10 Score=98.14 Aligned_cols=130 Identities=18% Similarity=0.100 Sum_probs=94.3
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...+...|..+.+.|++++|+..|+++++..|++.. +...++.++...|+++++...+.....
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~-----------------~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD-----------------ARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH-----------------HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 345567788888899999999999999999998665 577788888888998888888877777
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~ 230 (266)
..|.++..+..+|.++..+|++++|+..|++++..+|+|+.++..++.+....++..++.+- +++++
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~-~~~~~ 275 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL-RRQAL 275 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 77888888889999999999999999999999999999999999999887776666544433 44444
No 61
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.16 E-value=2.7e-09 Score=99.07 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=122.6
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.+..+..+||.+|..|++++|...+.++|..+|.... +|+-+|.+|-.+|+..+|+...-.|-
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~-----------------ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI-----------------AYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh-----------------hHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3778889999999999999999999999999999665 69999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531 162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 234 (266)
Q Consensus 162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~ 234 (266)
.++|.+..-|.+++....++|++.+|.-+|.+|++.+|.|-.....-..+.+..+....+..- |.++|...|
T Consensus 201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~-f~~l~~~~p 272 (895)
T KOG2076|consen 201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMET-FLQLLQLDP 272 (895)
T ss_pred hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH-HHHHHhhCC
Confidence 999999999999999999999999999999999999999988888888888877777666555 778887666
No 62
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.14 E-value=1e-09 Score=106.04 Aligned_cols=133 Identities=22% Similarity=0.167 Sum_probs=104.7
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
......|..+...|++++|+..+.+++...|++.. +++++|.++...|++++|+..|++++..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV-----------------LRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 34556788888888889999888888888887554 5778888888888888888888888888
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531 164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 235 (266)
Q Consensus 164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~ 235 (266)
+|+++.++..+|.++...|+ .+|+..+++++.+.|+++.+...++.+....++..++.. .|++++...+.
T Consensus 800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~a~~~~~~ 869 (899)
T TIGR02917 800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP-LLRKAVNIAPE 869 (899)
T ss_pred CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC
Confidence 88888888888888888888 778888888888888888888777777666655554444 57777776554
No 63
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=2.7e-09 Score=91.84 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhHHHHhhc-cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH--HHHHHH
Q 024531 80 IGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY--EEAIGQ 156 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~--~~A~~~ 156 (266)
+.....+..+|..+...| ++.+|+..+.+++..+|.+.. ++.+++.++.+++.. .+++.+
T Consensus 68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-----------------aW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-----------------IWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH-----------------HhHHHHHHHHHcCchhhHHHHHH
Confidence 334455566677777766 567777777777777777544 688999999888874 788999
Q ss_pred HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HH---HHHHHHHHHhccc
Q 024531 157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE---KA---VYKKQKEIYKGIF 230 (266)
Q Consensus 157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~---~~---~~~~~~~~~~k~~ 230 (266)
++++++++|.|..+|..+|.++..+|+|++|++++.++++++|.|..+......+.... .. ..+++-.+..++.
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888765432 11 1234445554555
Q ss_pred CCCCCCcccchh
Q 024531 231 GPRPEPKQKKNW 242 (266)
Q Consensus 231 ~~~~~~~~~~~~ 242 (266)
...|.+ .++|
T Consensus 211 ~~~P~N--~SaW 220 (320)
T PLN02789 211 LANPRN--ESPW 220 (320)
T ss_pred HhCCCC--cCHH
Confidence 444332 3555
No 64
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.13 E-value=8.8e-10 Score=110.35 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=75.0
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
..|..++..|++++|+..|++++...|++.. ++..+|.++.+.|++++|+.+++++++++|++
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~-----------------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE-----------------ALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4588889999999999999999999998654 35555555555555555555555555555543
Q ss_pred hH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531 168 VK--------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP 232 (266)
Q Consensus 168 ~~--------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~ 232 (266)
.. ....+|.++...|++++|+..|++++.++|++..+...++.+...+++..++.+. |++++..
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~-y~~aL~~ 414 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERY-YQQALRM 414 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHh
Confidence 32 1123344555555555555555555555555555555555554444443333322 4444443
No 65
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.12 E-value=2e-09 Score=104.00 Aligned_cols=136 Identities=24% Similarity=0.286 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
...+..+...|..++..|++++|+..|.+++...|.... ++..+|.++...|++++|+..+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~ 184 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY-----------------AKLGLAQLALAENRFDEARALIDE 184 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----------------hHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345667788999999999999999999999999987654 577888888888888888888888
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR 233 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~ 233 (266)
++..+|.+..+++.+|.++...|++++|...|++++.++|++..+...+..+....++..++. ..+..+....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~-~~~~~~~~~~ 257 (899)
T TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAE-KHADALLKKA 257 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhC
Confidence 888888888888888888888888888888888888888888877777777665555544433 3345554433
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.3e-10 Score=103.08 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=93.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
.+.+..+|..|+-.|+|++|++.|+.||...|++.. +++.+|.++..-.+..+|+..|++||.
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-----------------lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-----------------LWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH-----------------HHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 445567899999999999999999999999999766 588899999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
+.|.++.+.|++|.+++.+|.|.+|.++|-.||.+.+.
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999876
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=2.2e-09 Score=88.56 Aligned_cols=131 Identities=12% Similarity=-0.049 Sum_probs=107.8
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh--------hCHHHHHH
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL--------KRYEEAIG 155 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~--------~~~~~A~~ 155 (266)
..+...|..++..|++++|+..|.++++..|++.. ...+++.+|.++... |++++|+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~ 136 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD--------------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFE 136 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc--------------hHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 45678899999999999999999999999997654 122578889999876 88999999
Q ss_pred HHHhHhcCCCCchHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHH
Q 024531 156 QCSLVLGEDENNVKA-----------------LFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELRLLAEHE 215 (266)
Q Consensus 156 ~~~~al~l~p~~~~a-----------------~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~ 215 (266)
.+++++..+|++..+ .+.+|.+|+..|++.+|+..|++++...|++ +.++..+..+...+
T Consensus 137 ~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 137 AFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence 999999999998643 2467899999999999999999999997765 57888888887777
Q ss_pred HHHHHHHHHHHhcc
Q 024531 216 KAVYKKQKEIYKGI 229 (266)
Q Consensus 216 ~~~~~~~~~~~~k~ 229 (266)
++..+... .+..+
T Consensus 217 g~~~~A~~-~~~~l 229 (235)
T TIGR03302 217 GLKDLAQD-AAAVL 229 (235)
T ss_pred CCHHHHHH-HHHHH
Confidence 77665554 34443
No 68
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.12 E-value=4.2e-10 Score=75.36 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=65.2
Q ss_pred HHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 141 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 141 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
..+|+..++|+.|+.++++++.++|+++..++.+|.++..+|+|.+|+.+|+++++.+|+++.+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999999888765543
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.11 E-value=1.7e-09 Score=108.38 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=100.0
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
...|..++..|++++|+..|++++...|.+.. ++.++|.++...|++++|+..|+++++++|+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~-----------------a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSY-----------------AVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 45688888999999999999999999988654 5778888888888888888888888888888
Q ss_pred chHHHHHHH------------------------------------------HHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531 167 NVKALFRRG------------------------------------------KARAELGQTDAAREDFLKAGKFAPEDKSI 204 (266)
Q Consensus 167 ~~~a~~~~g------------------------------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 204 (266)
+..++..++ .++...|++++|+..|+++++++|+++.+
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 776655443 33446788888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531 205 ARELRLLAEHEKAVYKKQKEIYKGIFGPRP 234 (266)
Q Consensus 205 ~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~ 234 (266)
...+..+....++..++... +++++...+
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~-l~~al~~~P 526 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADAL-MRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHH-HHHHHHcCC
Confidence 88888877666666555444 566665444
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=1.9e-09 Score=86.04 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=103.5
Q ss_pred hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 212 (266)
Q Consensus 133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 212 (266)
...+...+|..|+..|++..|...+++||+.||++..+|.-++.+|..+|+.+.|.+.|++|++++|+|.+++++.+--.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCcccchhHHHhHHHH
Q 024531 213 EHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL 250 (266)
Q Consensus 213 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 250 (266)
-.+++.+++... |.+.+..+....+...|-.+.|=.+
T Consensus 114 C~qg~~~eA~q~-F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 114 CAQGRPEEAMQQ-FERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HhCCChHHHHHH-HHHHHhCCCCCCcchhhhhhHHHHh
Confidence 777766655554 8888888888888877766666444
No 71
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.09 E-value=3.7e-09 Score=77.09 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHH
Q 024531 77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 156 (266)
Q Consensus 77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~ 156 (266)
...++....+.-.|..+...|+.+.|++.|.++|.+.|.... +|+|+|+++.-.|+.++|+++
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS-----------------ayNNRAQa~RLq~~~e~ALdD 99 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERAS-----------------AYNNRAQALRLQGDDEEALDD 99 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH-----------------hhccHHHHHHHcCChHHHHHH
Confidence 445667778888999999999999999999999999999655 799999999999999999999
Q ss_pred HHhHhcCCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531 157 CSLVLGEDENNV----KALFRRGKARAELGQTDAAREDFLKAGKFAP 199 (266)
Q Consensus 157 ~~~al~l~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 199 (266)
+++|+++..... .++..+|.+|..+|+-+.|..+|..+-++..
T Consensus 100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 999999976654 4788999999999999999999999988765
No 72
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.08 E-value=3.8e-09 Score=93.50 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=85.9
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
..|..++..|++++|+..|.++++..|... .++..+|.++.+.|++++|+..+++++..+|.+
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCV-----------------RASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 444455555555555555555555544422 257778888888888888888888888887766
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531 168 -VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP 234 (266)
Q Consensus 168 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~ 234 (266)
..++..++.+|...|++++|+..+++++..+|++..+ ..+..+....++..++ ...+.+++...|
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A-~~~l~~~l~~~P 313 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAA-QALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHH-HHHHHHHHHhCc
Confidence 3566778888888888888888888888888876554 5566665555555443 344666665543
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.08 E-value=2.7e-09 Score=102.61 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=105.4
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+..+...|..+...|++.+|+..|++++...|.+.. ++.++|.++...|++++|+..+++++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-----------------YQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445788899999999999999999999999998765 578999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 214 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 214 (266)
.+|++.. ++.+|.++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 112 ~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 112 GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999998888776543
No 74
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.08 E-value=1.3e-09 Score=82.88 Aligned_cols=96 Identities=15% Similarity=0.050 Sum_probs=87.3
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
..+.+|..+...|++++|...|+.+..+||.+...|+++|.|+..+|+|.+|+..|.+++.++|+|+....+++.|.-..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhcccCC
Q 024531 216 KAVYKKQKEIYKGIFGP 232 (266)
Q Consensus 216 ~~~~~~~~~~~~k~~~~ 232 (266)
++...+.+. |+.....
T Consensus 117 G~~~~A~~a-F~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKA-LKAVVRI 132 (157)
T ss_pred CCHHHHHHH-HHHHHHH
Confidence 887766665 5665543
No 75
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=1.1e-08 Score=84.76 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=104.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...++..|..++..|+|++|+..|.+++...|.... ...+.+++|.+|++.+++..|+..+++.++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~--------------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY--------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 556789999999999999999999999999998643 333678999999999999999999999999
Q ss_pred CCCCch---HHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHH
Q 024531 163 EDENNV---KALFRRGKARAELGQ------------------TDAAREDFLKAGKFAPED---KSIARELRLLAEHEKAV 218 (266)
Q Consensus 163 l~p~~~---~a~~~~g~~~~~~g~------------------~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~~~~ 218 (266)
.+|+++ .++|.+|.++..++. ..+|+..|+..++..|+. +++...|..|..++.+.
T Consensus 98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 999875 579999999866651 257889999999999986 45666666665555554
Q ss_pred HHHHHHHHh
Q 024531 219 YKKQKEIYK 227 (266)
Q Consensus 219 ~~~~~~~~~ 227 (266)
+-.-.+.|.
T Consensus 178 e~~ia~~Y~ 186 (243)
T PRK10866 178 ELSVAEYYT 186 (243)
T ss_pred HHHHHHHHH
Confidence 444334333
No 76
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.07 E-value=3.5e-09 Score=79.13 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=97.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...++..|...++.|+|..|++.|+......|...- ...+.+.++.+|++.++|..|+..+++-++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--------------a~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567889999999999999999999999999987543 233788999999999999999999999999
Q ss_pred CCCCch---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHH
Q 024531 163 EDENNV---KALFRRGKARAELGQ---------------TDAAREDFLKAGKFAPEDKSIAR 206 (266)
Q Consensus 163 l~p~~~---~a~~~~g~~~~~~g~---------------~~~A~~~~~~al~l~p~~~~~~~ 206 (266)
++|.++ -++|.+|.+++.+.. ...|..+|++++..-|+++-+..
T Consensus 76 LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 76 LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 999986 479999999999988 89999999999999999875543
No 77
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.05 E-value=1.1e-08 Score=82.70 Aligned_cols=131 Identities=21% Similarity=0.160 Sum_probs=100.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
..+.++..|..++..|+|.+|+..|.+.+...|.... ...+.+.+|.++.+.|++..|+..+++.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~--------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY--------------APQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT--------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678899999999999999999999999999998654 33478899999999999999999999999
Q ss_pred cCCCCch---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHHHHH
Q 024531 162 GEDENNV---KALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDK---SIARELRLLAEHEKAVYKKQKE 224 (266)
Q Consensus 162 ~l~p~~~---~a~~~~g~~~~~~g~-----------~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~ 224 (266)
...|+++ .++|.+|.+++.+.. ..+|+..|+..+...|+++ ++...+..|...+.+.+-.-.+
T Consensus 70 ~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 70 KLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999875 589999999877643 3589999999999999974 5555566665555544433333
Q ss_pred HH
Q 024531 225 IY 226 (266)
Q Consensus 225 ~~ 226 (266)
.|
T Consensus 150 ~Y 151 (203)
T PF13525_consen 150 FY 151 (203)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 78
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.05 E-value=7.6e-09 Score=91.59 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHH---HH----------Hhhh
Q 024531 76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDM---AL----------AVKN 134 (266)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~---~~----------~l~~ 134 (266)
.+.....+...+..|..+...|++++|+..|.++++.+|++.... ..+...+- .. ....
T Consensus 28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 344455566667778888888888888888888888877654310 00000000 00 0011
Q ss_pred hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
.++.++|.+|...|++++|+..+.+++..+|.+..++..++.++...|++++|++.+++++..+|.+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 2345556666666666666666666666555555566666666666666666666666665555543
No 79
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.05 E-value=5.3e-10 Score=73.76 Aligned_cols=68 Identities=26% Similarity=0.276 Sum_probs=62.1
Q ss_pred HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
+++.|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++.+...++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999999999999999998888776643
No 80
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.6e-09 Score=90.15 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=124.4
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
..+..++-+|..++-..+.+.|+.+|+++|.++|+.......-. +.+ ......+.|.-.++.|.+..|.+.|..+
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~---~~k--~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM---MPK--KLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh---hHH--HHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 45677888999999999999999999999999998543211000 001 1224567899999999999999999999
Q ss_pred hcCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531 161 LGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 236 (266)
Q Consensus 161 l~l~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~ 236 (266)
|.+||++ .+.|+++|.+...+|+..+|+.++..++.|+|..-.+...-+.|+..+.+.+.+.+ +|.+.......+
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~-d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE-DYEKAMQLEKDC 354 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccc
Confidence 9999986 56799999999999999999999999999999988888888888888887765554 477777665554
Q ss_pred cccchhH
Q 024531 237 KQKKNWL 243 (266)
Q Consensus 237 ~~~~~~~ 243 (266)
.....|+
T Consensus 355 e~r~~l~ 361 (486)
T KOG0550|consen 355 EIRRTLR 361 (486)
T ss_pred chHHHHH
Confidence 4444443
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=3.6e-09 Score=94.13 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------h-------------------------
Q 024531 75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------L------------------------- 121 (266)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~------------------------- 121 (266)
+..+.+..++.+..+|.....+++=..|+..+++|++++|.+...- .
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 4455678899999999999999999999999999999998753220 0
Q ss_pred -------ch------------hHHHHH--------HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHH
Q 024531 122 -------FG------------KYRDMA--------LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR 174 (266)
Q Consensus 122 -------~~------------~~~~~~--------~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~ 174 (266)
++ +..+.. ..+...++..+|..|.-.|+|++|+++|+.||..+|++...|.++
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 00 000000 012345778899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---Cccc-chhHHHhHHHH
Q 024531 175 GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE---PKQK-KNWLIIFWQLL 250 (266)
Q Consensus 175 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~---~~~~-~~~~~~~~~~~ 250 (266)
|-++..-.+..+|+..|++|++|.|+-..++.+|+.....++-++++.+.+...+ ..-+. .... .+ -.-.|+.|
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL-~mq~ks~~~~~~~~~-se~iw~tL 548 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL-SMQRKSRNHNKAPMA-SENIWQTL 548 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH-HhhhcccccccCCcc-hHHHHHHH
Confidence 9999999999999999999999999999999999999888999988888765444 33222 1111 11 23468888
Q ss_pred HHHHHHHhhh
Q 024531 251 VSLVLGLFKR 260 (266)
Q Consensus 251 ~~~~~~~~~~ 260 (266)
. .++.++.|
T Consensus 549 R-~als~~~~ 557 (579)
T KOG1125|consen 549 R-LALSAMNR 557 (579)
T ss_pred H-HHHHHcCC
Confidence 8 55555544
No 82
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=94.31 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=117.3
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+..+.+.|+..|.+|++++|.+.|.++|.-+..... +++|+|..+-.+|+.++|+++|-+.-.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-----------------alfniglt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-----------------ALFNIGLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-----------------HHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence 344557799999999999999999999987766433 699999999999999999999988777
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchh
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNW 242 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 242 (266)
+--++...++.++.+|.-+.+..+|++.|.++..+-|+++.++..|+.++...+..-++-+..| .-+.-.|-+-....|
T Consensus 553 il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y-dsyryfp~nie~iew 631 (840)
T KOG2003|consen 553 ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY-DSYRYFPCNIETIEW 631 (840)
T ss_pred HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh-hcccccCcchHHHHH
Confidence 7668999999999999999999999999999999999999999999999877776665555533 333322443334455
Q ss_pred H
Q 024531 243 L 243 (266)
Q Consensus 243 ~ 243 (266)
+
T Consensus 632 l 632 (840)
T KOG2003|consen 632 L 632 (840)
T ss_pred H
Confidence 3
No 83
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.04 E-value=3.1e-10 Score=95.17 Aligned_cols=109 Identities=23% Similarity=0.318 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531 75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 154 (266)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~ 154 (266)
..++..+++...+..+...+..|.++.|+..|..+|.+.|.... +|.+++.++++++.+..|+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~-----------------l~~kr~sv~lkl~kp~~ai 168 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI-----------------LYAKRASVFLKLKKPNAAI 168 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh-----------------hcccccceeeeccCCchhh
Confidence 56778899999999999999999999999999999999998655 6999999999999999999
Q ss_pred HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
.+|..|+.++|+..+.|-.+|.++..+|+|.+|..++..+++++-+
T Consensus 169 rD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 169 RDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999998754
No 84
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4e-10 Score=86.22 Aligned_cols=62 Identities=27% Similarity=0.499 Sum_probs=58.0
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccc
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK 66 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~ 66 (266)
+||.+ +||+|+|.+|.-|+.||+..++|.|.++||+.|. ++.||+++.+.|+++|+.+.+..
T Consensus 118 ~LG~g-qVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~--~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 118 TLGTG-QVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA--PPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred EeCCC-ceeccHhHHhhhhCcccceEEecCccccCccCCC--CCCCCCCeeEEEEEEEEEeecCC
Confidence 58999 8999999999999999999999999999999998 66699999999999999987754
No 85
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.02 E-value=4e-09 Score=92.43 Aligned_cols=113 Identities=13% Similarity=0.022 Sum_probs=96.6
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
+...|...+..|+|.+|+..|+++|.++|++..+++.+|.+|..+|++++|+.++++++.++|++..++..++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHhcccCCCCCCcccchhHHHhHHHH
Q 024531 217 AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL 250 (266)
Q Consensus 217 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 250 (266)
+..++... |++.+...+.......|...+-.-+
T Consensus 85 ~~~eA~~~-~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAA-LEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77666555 7888877776655555544443333
No 86
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.1e-09 Score=87.00 Aligned_cols=115 Identities=21% Similarity=0.177 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh---CHHHHHHH
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQ 156 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~---~~~~A~~~ 156 (266)
+..++.+.-+|..++..|++..|...|.+|+++.|+++. .+..+|.+++... .-.++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~-----------------~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE-----------------ILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhcCCcccHHHHHH
Confidence 455666778899999999999999999999999999776 4677777776655 47889999
Q ss_pred HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
+++++.+||.++.+.+.+|..+++.|+|.+|...++..+...|.+...+..+...
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999887776666544
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.3e-08 Score=95.32 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=113.3
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
..+++.+|-.|+|..+...+..++..... ..+....++++|.+|-.+|+|++|..+|-+++..+|+
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~--------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTEN--------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 33444444455555555544444443322 2345667999999999999999999999999999999
Q ss_pred c-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHhcccCCCCCCcccchh
Q 024531 167 N-VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK---AVYKKQKEIYKGIFGPRPEPKQKKNW 242 (266)
Q Consensus 167 ~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~---~~~~~~~~~~~k~~~~~~~~~~~~~~ 242 (266)
+ .-+++.+|+.|+..|+++.|..+|++++...|++.+....|+.++.... +..+....+..+.+. ..+....+|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccHHHH
Confidence 8 7899999999999999999999999999999999999999999876652 233444445555543 335555888
Q ss_pred HHHhHHHHHHHH
Q 024531 243 LIIFWQLLVSLV 254 (266)
Q Consensus 243 ~~~~~~~~~~~~ 254 (266)
..++..|..+-.
T Consensus 418 l~laql~e~~d~ 429 (1018)
T KOG2002|consen 418 LELAQLLEQTDP 429 (1018)
T ss_pred HHHHHHHHhcCh
Confidence 888777765543
No 88
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.00 E-value=8.2e-09 Score=84.79 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=101.4
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
...++.+..+++.|+|..|...|..-|...|++.- ...+++.+|.+++.+|+|.+|...|..+++-
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--------------cchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 33899999999999999999999999999998543 4458999999999999999999999999999
Q ss_pred CCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 164 DENNV---KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 164 ~p~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
.|.++ ++++.+|.|...+|+.++|...|+.+++.-|+.+.+...-..
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 88765 679999999999999999999999999999999887654443
No 89
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.99 E-value=1.1e-08 Score=70.20 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=83.0
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
+++++|.++...|++.+|+..+.+++...|.+..+++.+|.++...+++++|+..|++++.+.|.+..+...+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999998888888887777
Q ss_pred HHHHHHHHHHHhcccC
Q 024531 216 KAVYKKQKEIYKGIFG 231 (266)
Q Consensus 216 ~~~~~~~~~~~~k~~~ 231 (266)
++..... ..+...+.
T Consensus 82 ~~~~~a~-~~~~~~~~ 96 (100)
T cd00189 82 GKYEEAL-EAYEKALE 96 (100)
T ss_pred HhHHHHH-HHHHHHHc
Confidence 6655444 34555544
No 90
>PLN02789 farnesyltranstransferase
Probab=98.99 E-value=2.5e-08 Score=85.84 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=114.0
Q ss_pred HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcCCCCchHH
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGEDENNVKA 170 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a 170 (266)
.+...+++.+|+..+.++|.++|.... ++.+++.++..++ .+.+++..+++++..+|.+..+
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~yt-----------------aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYT-----------------VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHH-----------------HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence 456678999999999999999999655 6999999999999 6899999999999999999999
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchhHHH
Q 024531 171 LFRRGKARAELGQT--DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLII 245 (266)
Q Consensus 171 ~~~~g~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 245 (266)
|+.++.++..+|.. ++++..+.++++++|.|-.+....+-+...++..+++ -..+.+++...+.+ .++|...
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee-L~~~~~~I~~d~~N--~sAW~~R 182 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE-LEYCHQLLEEDVRN--NSAWNQR 182 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHCCCc--hhHHHHH
Confidence 99999999999974 7899999999999999999999999998888776654 45577877654443 3566433
No 91
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=1.3e-09 Score=71.20 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=58.5
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
.+|..++..|+|++|+..|++++...|.+.. +++.+|.++..+|++++|+..++++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE-----------------AWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 6799999999999999999999999999665 69999999999999999999999999999987
Q ss_pred h
Q 024531 168 V 168 (266)
Q Consensus 168 ~ 168 (266)
+
T Consensus 65 p 65 (65)
T PF13432_consen 65 P 65 (65)
T ss_dssp H
T ss_pred C
Confidence 5
No 92
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.98 E-value=4.4e-09 Score=98.35 Aligned_cols=143 Identities=11% Similarity=0.115 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
+..+..+.-+|.+.|+.++|..|+.+|++++..+|..... ....+|.|+.++++.+.|+..+.+
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD----------------~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD----------------VRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC----------------ccchhhhHHHhccchhhHHHHHHH
Confidence 4556677788999999999999999999999999985432 466788999999999999999999
Q ss_pred HhcCCCCc------------------------------------------------------------------------
Q 024531 160 VLGEDENN------------------------------------------------------------------------ 167 (266)
Q Consensus 160 al~l~p~~------------------------------------------------------------------------ 167 (266)
|+.+||.+
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 99998832
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531 168 --VKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239 (266)
Q Consensus 168 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 239 (266)
...+|.+|.+|+.+|+|++|..+|..++..+|++ .-....|+..+......+.+..- |.+++...|.+...
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~-fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC-FEKVLKQLPNNYET 378 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH-HHHHHHhCcchHHH
Confidence 3469999999999999999999999999999998 55556677666566666555444 67777666665544
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.97 E-value=1.4e-08 Score=82.50 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=107.7
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
...++.++..|+-+.++....++....|.+.. ++.-.|...+..|+|..|+..++++..++|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~-----------------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE-----------------LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHH-----------------HHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 45666777777777777777777666666543 3555899999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531 167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~ 230 (266)
+.++|.-+|.+|.+.|++++|...|.+++++.|+++.+..+|....-..++.+.+++.+.....
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998777777777776554444
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=5.2e-09 Score=95.81 Aligned_cols=105 Identities=26% Similarity=0.190 Sum_probs=86.5
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH--HHH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG--QCS 158 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~--~~~ 158 (266)
..+..++..|..+..+|++.+|...|..|+.++|+... +...+|.++.+.|+..-|.. ...
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~-----------------s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP-----------------SMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH-----------------HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 34556677788888888888888888888888888554 57788888888888777777 888
Q ss_pred hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
.++++||.++++||.+|.++..+|+.++|.++|+-|+++++.+|
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 88888888888888888888888888888888888888888775
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.96 E-value=1.9e-08 Score=94.75 Aligned_cols=110 Identities=8% Similarity=-0.048 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH
Q 024531 76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 155 (266)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~ 155 (266)
.+..+..+......+..+.+.+++++|+..+.+++...|++.. .++++|.++.++|++++|+.
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~-----------------~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR-----------------EILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHhcchHHHHH
Confidence 3344666777888999999999999999999999999999776 59999999999999999999
Q ss_pred HHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 156 QCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 156 ~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
.|++++..+|++.+++..+|.++..+|+.++|...|++++.....-.
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 99999999999999999999999999999999999999999876543
No 96
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=3.2e-09 Score=84.04 Aligned_cols=134 Identities=22% Similarity=0.120 Sum_probs=113.8
Q ss_pred CCCCCCceEEEEEEeeccccccCCCCCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhH
Q 024531 46 NVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKY 125 (266)
Q Consensus 46 ~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~ 125 (266)
.+|.+..+..++.+..++.... .-.++.++ .+..+.++|+.+-..|-+..|.-.|.+++.+.|..+.
T Consensus 34 ~~~~qp~lqqEV~iarlsqlL~---~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~------- 100 (297)
T COG4785 34 AVPLQPTLQQEVILARMSQILA---SRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE------- 100 (297)
T ss_pred eccCCccHHHHHHHHHHHHHHH---hccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH-------
Confidence 3455555555555554444332 34445444 4888999999999999999999999999999999665
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 126 RDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 126 ~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
+++.+|..+...|+|+.|.+.|+.++++||.+.-++.++|.+++.-|+|.-|.+++.+--+-||++|
T Consensus 101 ----------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 101 ----------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ----------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 6999999999999999999999999999999999999999999999999999999999999999987
No 97
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.93 E-value=1.8e-08 Score=96.95 Aligned_cols=106 Identities=9% Similarity=-0.036 Sum_probs=99.3
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
..+...|..+...|++++|+..+++++...|.+.. ++.++|.++...|++++|+..+++++.+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~-----------------l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG-----------------LRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 44567888999999999999999999999999755 6999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531 164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206 (266)
Q Consensus 164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 206 (266)
+|++..+++.+|.++..+|+|++|...++++++.+|+++.+..
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999999999997764
No 98
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=1.3e-08 Score=79.60 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=90.2
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc--
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN-- 167 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 167 (266)
.+.+|-...|..+...+...+...+.+. ...+++++|.++...|++++|+..+++++.+.|+.
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEK---------------EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD 70 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence 4455666667777777766555443321 23368999999999999999999999999887763
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 168 -VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 168 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
+.+++++|.++..+|++++|+..|++++.++|.+......+..+...+.
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999998888888876333
No 99
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.92 E-value=2.8e-08 Score=95.19 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=105.7
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--------hhchhHHHH---HHH------hhhhhhhhHHHHH
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFGKYRDM---ALA------VKNPCHLNMAACL 144 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------~~~~~~~~~---~~~------l~~~~~~n~a~~~ 144 (266)
.+...+..+...++.|+++.|+..|.++++.+|..... ...+...+- ... .....+..+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45578899999999999999999999999999986311 011111111 111 1122333446688
Q ss_pred HHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 145 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 224 (266)
Q Consensus 145 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 224 (266)
...|+|++|+..|+++++.+|+++.+++.++.++...+++++|+..++++...+|.+... ..+..+.....+..+ +-.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHH
Confidence 888888888888888888888888888888888888888888888888888888876665 344444433333333 444
Q ss_pred HHhcccCCCCCCcc
Q 024531 225 IYKGIFGPRPEPKQ 238 (266)
Q Consensus 225 ~~~k~~~~~~~~~~ 238 (266)
.|++++...|....
T Consensus 191 ~~ekll~~~P~n~e 204 (822)
T PRK14574 191 ASSEAVRLAPTSEE 204 (822)
T ss_pred HHHHHHHhCCCCHH
Confidence 57777776655443
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=4.5e-08 Score=85.85 Aligned_cols=128 Identities=16% Similarity=0.024 Sum_probs=115.4
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
......+..+...+..|+++.|...++..+...|++.. .....+.+++..++..+|++.++++
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~-----------------~~~~~~~i~~~~nk~~~A~e~~~ka 366 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY-----------------YLELAGDILLEANKAKEAIERLKKA 366 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34556678889999999999999999999999998776 3667899999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI 225 (266)
Q Consensus 161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 225 (266)
+.++|+......++|.++++.|++.+|+..++..+.-+|+|+..+..|+..+..++...++....
T Consensus 367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988887766555543
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.90 E-value=2e-08 Score=95.71 Aligned_cols=142 Identities=15% Similarity=0.004 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
+.....+..+...+...+++++|+.....+++..|+... +|+.+|..+...+++.++... .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-----------------~yy~~G~l~~q~~~~~~~~lv--~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-----------------ALYISGILSLSRRPLNDSNLL--N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-----------------hHHHHHHHHHhhcchhhhhhh--h
Confidence 345667778888888999999999999999999999665 467777777776666555544 4
Q ss_pred HhcCCC-------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531 160 VLGEDE-------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 220 (266)
Q Consensus 160 al~l~p-------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 220 (266)
++..-+ .+-.|++.+|.||-++|++++|...|+++++++|+|+.+.+.++...... ..+
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHH
Confidence 444444 44489999999999999999999999999999999999999999987766 566
Q ss_pred HHHHHHhcccCCCCCCcccchh
Q 024531 221 KQKEIYKGIFGPRPEPKQKKNW 242 (266)
Q Consensus 221 ~~~~~~~k~~~~~~~~~~~~~~ 242 (266)
+...|+++++...-...+....
T Consensus 167 KA~~m~~KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 167 KAITYLKKAIYRFIKKKQYVGI 188 (906)
T ss_pred HHHHHHHHHHHHHHhhhcchHH
Confidence 7777888887654444444344
No 102
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=4.1e-08 Score=74.96 Aligned_cols=127 Identities=13% Similarity=0.008 Sum_probs=74.5
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
..+...+......+..+++..+...+...+.-.|+..- ...+.+.+|.+++..|++++|+..++.+
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y--------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY--------------AALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555556666666666666666666666666665421 2224556666677777777777777776
Q ss_pred hcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531 161 LGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 222 (266)
Q Consensus 161 l~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 222 (266)
+...|+. ..+.+++|.++..+|+|++|+..++.+ .-.+-.+.+...++.+....++..++.
T Consensus 75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEAR 138 (145)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHH
Confidence 6655443 346666677777777777777666542 222334555555666655555544433
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.87 E-value=2.7e-08 Score=72.61 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=83.6
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELR 209 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~ 209 (266)
.++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.+...++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 58899999999999999999999999999876 5799999999999999999999999999999986 56777778
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531 210 LLAEHEKAVYKKQKEIYKGIFGPRPEP 236 (266)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~k~~~~~~~~ 236 (266)
.+....++..+.. ..+..++...|..
T Consensus 84 ~~~~~~~~~~~A~-~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAK-ATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHH-HHHHHHHHHCcCC
Confidence 7776666655444 4467776655543
No 104
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.86 E-value=1.2e-08 Score=67.23 Aligned_cols=67 Identities=27% Similarity=0.321 Sum_probs=59.9
Q ss_pred HHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHH
Q 024531 93 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF 172 (266)
Q Consensus 93 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~ 172 (266)
++..|+|++|+..|++++...|++.. ++..+|.||++.|++++|...+.+++..+|+++..+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE-----------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH-----------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 46789999999999999999999766 5889999999999999999999999999999988777
Q ss_pred HHHH
Q 024531 173 RRGK 176 (266)
Q Consensus 173 ~~g~ 176 (266)
-++.
T Consensus 64 l~a~ 67 (68)
T PF14559_consen 64 LLAQ 67 (68)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6664
No 105
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.84 E-value=1.2e-08 Score=89.61 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=60.5
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA---LFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
+++|+|.+|+++|+|++|+..|+++|+++|++..+ ||++|.||..+|++++|+.+|++|+++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999865 9999999999999999999999999983
No 106
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.83 E-value=5.8e-08 Score=74.96 Aligned_cols=99 Identities=29% Similarity=0.262 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh----------hCHHHHHHHHHhHhcCCCCch
Q 024531 99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----------KRYEEAIGQCSLVLGEDENNV 168 (266)
Q Consensus 99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~----------~~~~~A~~~~~~al~l~p~~~ 168 (266)
|+.|.+.|......+|.+.+ .+++=|.+++.+ ..+.+|+.-++.||.++|+..
T Consensus 7 FE~ark~aea~y~~nP~Dad-----------------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h 69 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD-----------------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-----------------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHhCcHhHH-----------------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH
Confidence 67888999999999998765 355555555544 347889999999999999999
Q ss_pred HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531 169 KALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDKSIARELRLLAEH 214 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 214 (266)
.+++.+|.+|..++. |++|..+|++|...+|+|...++.|....+.
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 999999999998776 7999999999999999999999988877543
No 107
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.81 E-value=1.1e-07 Score=69.90 Aligned_cols=99 Identities=24% Similarity=0.118 Sum_probs=86.7
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
..+++.|..+-..|+.++|+..|.+++........ ...++.++|.++..+|++++|+..+++++..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~--------------~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD--------------RRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678899999999999999999999997554332 3447899999999999999999999999998
Q ss_pred CCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 164 DEN---NVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 164 ~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
.|+ +......++.++..+|++++|+..+-.++.
T Consensus 68 ~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 68 FPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888 778888899999999999999999988775
No 108
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=9.7e-08 Score=84.99 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=110.4
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC----C
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE----D 164 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l----~ 164 (266)
.|..+...+.+..|...|.+|+.+.|+++. ++..+|.+.+..+.|.+|+.+++.++.. .
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl-----------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPL-----------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcch-----------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 467777777778888888888888887766 5788999999999999999999999832 2
Q ss_pred CC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccch
Q 024531 165 EN---NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 241 (266)
Q Consensus 165 p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 241 (266)
+. ....+.++|.++.+++.|++|+.+|+++|.+.|.+..+...++.++..++....+ ...|-|.+...+.+.-...
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A-id~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA-IDHFHKALALKPDNIFISE 527 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH-HHHHHHHHhcCCccHHHHH
Confidence 22 2345789999999999999999999999999999999999999998888877544 4557788877777644433
Q ss_pred hHH
Q 024531 242 WLI 244 (266)
Q Consensus 242 ~~~ 244 (266)
.++
T Consensus 528 lL~ 530 (611)
T KOG1173|consen 528 LLK 530 (611)
T ss_pred HHH
Confidence 333
No 109
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=98.77 E-value=1.9e-08 Score=70.87 Aligned_cols=57 Identities=35% Similarity=0.579 Sum_probs=51.3
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEe
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~ 60 (266)
++|++ .+++||+.+|..|+.||++.|.+++..+||..+... +.+|+++++.|.|+|+
T Consensus 38 ~~g~~-~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~-~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 38 RLGSG-QVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP-PKIPPNSTLVFEIELL 94 (94)
T ss_dssp ETTSS-SSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT-TTBTTTSEEEEEEEEE
T ss_pred eeccC-ccccchhhhcccccCCCEeeeEeCChhhcCccccCC-CCcCCCCeEEEEEEEC
Confidence 57888 799999999999999999999999999999988733 3499999999999985
No 110
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.77 E-value=9.5e-08 Score=75.09 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=73.9
Q ss_pred hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
..+++++|.++...|++++|+.+|++++.+.|+. ..+++.+|.++..+|++++|+..|++++.++|++......++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3468999999999999999999999999887653 4689999999999999999999999999999999988888887
Q ss_pred HHHHHH
Q 024531 211 LAEHEK 216 (266)
Q Consensus 211 l~~~~~ 216 (266)
+...+.
T Consensus 115 ~~~~~g 120 (172)
T PRK02603 115 IYHKRG 120 (172)
T ss_pred HHHHcC
Confidence 765543
No 111
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.76 E-value=4.6e-08 Score=65.31 Aligned_cols=70 Identities=30% Similarity=0.362 Sum_probs=63.3
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
...+++.++|+.|+..+++++.+.|.+.. ++..+|.|+..+|++.+|+.+++++++.+|+++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE-----------------LWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch-----------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 46789999999999999999999999766 6999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 024531 170 ALFRRGK 176 (266)
Q Consensus 170 a~~~~g~ 176 (266)
+...++.
T Consensus 65 ~~~~~a~ 71 (73)
T PF13371_consen 65 ARALRAM 71 (73)
T ss_pred HHHHHHh
Confidence 7765543
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=1e-06 Score=71.55 Aligned_cols=142 Identities=16% Similarity=0.101 Sum_probs=104.7
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531 86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 165 (266)
Q Consensus 86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p 165 (266)
.+-.|..+-..|.|++|++.|...++-+|.+... +--.-.+...+|+.-+||...+.-++.-+
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~-----------------~KRKlAilka~GK~l~aIk~ln~YL~~F~ 151 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI-----------------RKRKLAILKAQGKNLEAIKELNEYLDKFM 151 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH-----------------HHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 3455777788899999999999999998876542 33333444557777788888888888888
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcccCCCCCCcccchhH
Q 024531 166 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK--AVYKKQKEIYKGIFGPRPEPKQKKNWL 243 (266)
Q Consensus 166 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~ 243 (266)
++.+||..++.+|...|+|++|.-||+.++-+.|.|+.....++.+.--++ +..+..+++|.+.+...+ ....+|+
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~--~~~ral~ 229 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP--KNLRALF 229 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh--HhHHHHH
Confidence 888888888888888888888888888888888888888877777754443 334455667777765544 2234555
Q ss_pred HHh
Q 024531 244 IIF 246 (266)
Q Consensus 244 ~~~ 246 (266)
+|.
T Consensus 230 GI~ 232 (289)
T KOG3060|consen 230 GIY 232 (289)
T ss_pred HHH
Confidence 443
No 113
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.75 E-value=3.1e-07 Score=85.71 Aligned_cols=105 Identities=22% Similarity=0.157 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
......+.+.+..+...|.|.+|+..|..++...+.... .+++++|.||+.+|.++.|+.+|.+
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~----------------~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA----------------FVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch----------------hhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 345777889999999999999999999999887766432 2799999999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
+|.++|++..+...++.++.++|+.++|.+.+.....-||.
T Consensus 475 vl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 475 VLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 99999999999999999999999999999999987744433
No 114
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.75 E-value=3.2e-08 Score=83.89 Aligned_cols=132 Identities=15% Similarity=0.055 Sum_probs=89.1
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
..+......+...++++++...+.++....+... ...++..+|.++.+.|++++|+.++++++++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD---------------SARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T----------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3344445556666777777777777654331100 1225778889999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
+|+++.+...++.++...|+++++...+.......|.|+..+..++.+...+++..++... |.+.+.
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~-~~~~~~ 242 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY-LEKALK 242 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc-cccccc
Confidence 9999999989999999999999888888888888888888888888888777776655544 566654
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=9.1e-07 Score=67.50 Aligned_cols=98 Identities=24% Similarity=0.233 Sum_probs=83.4
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
.......|..++..|+|++|+..|+.++...|+.. +...+.+.+|.+++..|++++|+..++. +.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~--------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~ 112 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE--------------LKPLARLRLARILLQQGQYDEALATLQQ-IP 112 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-cc
Confidence 45556789999999999999999999999776532 2444788999999999999999999966 44
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 195 (266)
-.+..+.++..+|.++...|++++|+..|++|+
T Consensus 113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 455667788899999999999999999999885
No 116
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.74 E-value=1.9e-08 Score=68.21 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=55.6
Q ss_pred hhhhhhHHHHHHHhhCHHHHHHHHHhHhcC----CC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGE----DE---NNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l----~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
..++.++|.+|..+|+|++|+.+|++++.+ .+ ....+++++|.++..+|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 347999999999999999999999999965 22 23578999999999999999999999999976
No 117
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.68 E-value=4e-07 Score=82.36 Aligned_cols=149 Identities=19% Similarity=0.136 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
+..+..+...|..|...++|.+|+..|++|+.+..... ++. ..-.+.++.|+|..|.+.|++++|..+|++
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~-----G~~----h~~va~~l~nLa~ly~~~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF-----GED----HPAVAATLNNLAVLYYKQGKFAEAEEYCER 308 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc-----CCC----CHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 34445556789999999999999999999998764210 000 111344799999999999999999999999
Q ss_pred HhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHHHHHHHHHH
Q 024531 160 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-----PED---KSIARELRLLAEHEKAVYKKQK 223 (266)
Q Consensus 160 al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----p~~---~~~~~~l~~l~~~~~~~~~~~~ 223 (266)
|+++ .|.-...+..++.++..++++++|...+++++++- +.| +.+...|+.++...+++.++.
T Consensus 309 Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~- 387 (508)
T KOG1840|consen 309 ALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE- 387 (508)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-
Confidence 9866 33345678899999999999999999999999973 233 677888888888888876554
Q ss_pred HHHhcccCCCCCCcc
Q 024531 224 EIYKGIFGPRPEPKQ 238 (266)
Q Consensus 224 ~~~~k~~~~~~~~~~ 238 (266)
.+|++++........
T Consensus 388 ~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 388 ELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHhccc
Confidence 457888765544433
No 118
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=98.68 E-value=3.7e-08 Score=77.31 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=54.1
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~ 63 (266)
++|.+ ++++||+.+|..|+.||.+.|.++|..+||..|. .+.|||++++.|+|+|.++.
T Consensus 118 ~vg~~-~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~--~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 118 KVDQQ-DLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGD--QNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EeCCc-chhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCC--CCCcCcCCcEEEEEEEEEec
Confidence 46876 7999999999999999999999999999999987 56799999999999999763
No 119
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.2e-08 Score=76.92 Aligned_cols=53 Identities=32% Similarity=0.502 Sum_probs=49.3
Q ss_pred ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531 8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62 (266)
Q Consensus 8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~ 62 (266)
.||+||+.+|..|+.|++..++|+|.++||..|. +..||||++++|+++|+++
T Consensus 152 ~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~--~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 152 GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV--PGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC--CCCCCCCCeEEEEEEEEec
Confidence 7999999999999999999999999999999996 3449999999999999875
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=85.85 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=103.8
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
+.+..|...+.+++|.+|.++++.++++.|-... .++++|.|..+++++..|.++|.+.+.++
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~-----------------~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLG-----------------TWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchh-----------------HHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 3455566667789999999999999999887544 59999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
|++..+|.+++.+|+.+++-.+|...+..|++-+-+|..++.+...+.....+.+++-+. |..+..
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A-~~rll~ 615 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA-YHRLLD 615 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999877766666666655544444443333 334433
No 121
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=7.9e-08 Score=80.56 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=112.0
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh-------hhchhHHHHH----------HHhhhhhhhhHHHHHH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLFGKYRDMA----------LAVKNPCHLNMAACLL 145 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------~~~~~~~~~~----------~~l~~~~~~n~a~~~~ 145 (266)
+-.+...+.++-..+++++|++.|..+++..|.+.+. ..-+...++. ..-...++.|+|.|.+
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 3444566888888899999999999999998864322 0111222221 1122457999999999
Q ss_pred HhhCHHHHHHHHHhHhcCCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531 146 KLKRYEEAIGQCSLVLGEDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 222 (266)
Q Consensus 146 ~~~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 222 (266)
-.+.++-++..+.+|+.... .-.+.||++|.+....|++.-|..+|+-+|.-||++.++..+|+.+..+.+...++
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A- 448 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA- 448 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH-
Confidence 99999999999999997643 34678999999999999999999999999999999999999999997766665543
Q ss_pred HHHHhcc
Q 024531 223 KEIYKGI 229 (266)
Q Consensus 223 ~~~~~k~ 229 (266)
+.++...
T Consensus 449 rsll~~A 455 (478)
T KOG1129|consen 449 RSLLNAA 455 (478)
T ss_pred HHHHHHh
Confidence 3334443
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=4.8e-07 Score=79.50 Aligned_cols=109 Identities=24% Similarity=0.180 Sum_probs=95.8
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531 86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 165 (266)
Q Consensus 86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p 165 (266)
.-..|..++..++..+|++.+++++.++|+... +..|+|.++++.|++.+|+..++..+.-+|
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-----------------l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSPL-----------------LQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH-----------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 345688999999999999999999999999655 688999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 166 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 166 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
+++..|..+|.+|..+|+-.+|...+-..+.+.-+-..+...+...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999888888888888877666555555544
No 123
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.64 E-value=2.8e-06 Score=76.10 Aligned_cols=134 Identities=12% Similarity=0.019 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531 79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158 (266)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~ 158 (266)
+...+......|...+..|+|..|.+...++.+..|.... .+...|.+....|+++.|..++.
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~-----------------~~llaA~aa~~~g~~~~A~~~l~ 142 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL-----------------NLIKAAEAAQQRGDEARANQHLE 142 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556777788999999999999999999999998877443 35667888888899999999999
Q ss_pred hHhcCCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531 159 LVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 159 ~al~l~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~ 230 (266)
++.+..|++. .+....+.++...|+++.|...++..++.+|+|+.+...+..+....+...+..+ .+....
T Consensus 143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~-~l~~l~ 214 (409)
T TIGR00540 143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD-IIDNMA 214 (409)
T ss_pred HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH-HHHHHH
Confidence 9888888775 4555568888899999999999999999999999888888888777766654443 344444
No 124
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.63 E-value=8.3e-08 Score=66.07 Aligned_cols=78 Identities=22% Similarity=0.165 Sum_probs=68.1
Q ss_pred hhCHHHHHHHHHhHhcCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 147 LKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 224 (266)
Q Consensus 147 ~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 224 (266)
.|+|+.|+..++++++.+|. +...++.+|.||+.+|+|++|+..+++ ...+|.+..+...++.+.-.+++.+++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999999995 567788899999999999999999999 889999999999999998888888777665
Q ss_pred H
Q 024531 225 I 225 (266)
Q Consensus 225 ~ 225 (266)
+
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 3
No 125
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.62 E-value=2.2e-07 Score=62.87 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
+..+..+...|..++..|+|++|+..|++++++....... ......++.|+|.|+..+|++++|+.++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD----------HPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH----------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3457788999999999999999999999999884221110 122456799999999999999999999999
Q ss_pred HhcC
Q 024531 160 VLGE 163 (266)
Q Consensus 160 al~l 163 (266)
++++
T Consensus 72 al~i 75 (78)
T PF13424_consen 72 ALDI 75 (78)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9875
No 126
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.62 E-value=1.3e-06 Score=79.92 Aligned_cols=121 Identities=16% Similarity=0.022 Sum_probs=72.3
Q ss_pred HHHHHHHHhHHHHhhcc---HHHHHHHHHHHHhhhccchhhh------------hc---hhH-HH---HHHH--------
Q 024531 82 AADRRKMDGNALFKEEK---LEEAMQQYEMAIAYMGDDFMFQ------------LF---GKY-RD---MALA-------- 131 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~------------~~---~~~-~~---~~~~-------- 131 (266)
.+-.++-+|..++..++ +..|+..|++|++++|+....- .. +.. .. ....
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 34455667777766544 8899999999999999864310 00 000 00 0000
Q ss_pred hhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 203 (266)
Q Consensus 132 l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 203 (266)
....+|.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 0112344555555566666666666666666666 3556666666666666666666666666666666553
No 127
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.62 E-value=1.1e-06 Score=79.61 Aligned_cols=119 Identities=15% Similarity=0.075 Sum_probs=106.8
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
..+.......|..++|...++..+..|.-.|...+ .+.-.|..+..+|+-++|...+..++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge-----------------slAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE-----------------SLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch-----------------hHHhccchhhcccchHHHHHHHHHHhcc
Confidence 45677788889999999999999999998887554 4677899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024531 164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY 219 (266)
Q Consensus 164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 219 (266)
|+.+.-+|.-+|.++....+|++|+++|+.|+.++|+|..++..++.+...++...
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998865555543
No 128
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.61 E-value=4.1e-07 Score=81.44 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=105.2
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
........|..+...|+++.|...+.++++..|++... . ...-+....+..++...++..+++++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-------------~--~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-------------S--LPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-------------h--hHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 45666778899999999999999999999999986431 0 01223333444678899999999999
Q ss_pred cCCCCch--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 162 GEDENNV--KALFRRGKARAELGQTDAAREDFL--KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 162 ~l~p~~~--~a~~~~g~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
+.+|+++ ..+..+|.+++.+|+|++|.++|+ .+++.+|++.... .++.+....++..+ ...+|++.++
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~-A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAE-AAAMRQDSLG 398 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 9999999 888899999999999999999999 6888999877755 88888777776544 4556776543
No 129
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=2.2e-07 Score=82.24 Aligned_cols=119 Identities=26% Similarity=0.216 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh---CHHH
Q 024531 76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEE 152 (266)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~---~~~~ 152 (266)
..+.++.++..+..|+..|..+....|+..|.+++...|.... +|.|+|.++++.+ +...
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~-----------------~l~nraa~lmkRkW~~d~~~ 429 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIY-----------------LLENRAAALMKRKWRGDSYL 429 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhH-----------------HHHhHHHHHHhhhccccHHH
Confidence 4677889999999999999999999999999999999888443 7999999999965 7888
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
|+.+|..|++++|...+|+|+++.++..++.+.+|+.+...+....|.+........-+
T Consensus 430 AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l 488 (758)
T KOG1310|consen 430 ALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCL 488 (758)
T ss_pred HHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999998888888766555444333
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.3e-06 Score=72.72 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 024531 99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR 178 (266)
Q Consensus 99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 178 (266)
.+..+...+.-|..+|++.. -+..+|.+|+.+|++..|...|.+|+++.|+|+..+.-+|.++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~e-----------------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL 200 (287)
T COG4235 138 MEALIARLETHLQQNPGDAE-----------------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL 200 (287)
T ss_pred HHHHHHHHHHHHHhCCCCch-----------------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55566667777777887655 3888999999999999999999999999999999999999998
Q ss_pred HHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 179 AELGQ---TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 179 ~~~g~---~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
+.+.+ ..++...|++++.+||+|..++..|+.-.-.++++.+ .-..+..|++..+..+
T Consensus 201 ~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~-A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 201 YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAE-AAAAWQMLLDLLPADD 261 (287)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH-HHHHHHHHHhcCCCCC
Confidence 87654 5789999999999999999999999987666666654 4455899998766655
No 131
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.59 E-value=6.8e-07 Score=85.86 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=94.1
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
|..+...|+|++|+..|+++++.+|++.. ++..++..+...++.++|+..+.+++..+|.+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~-----------------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPD-----------------LISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 44666779999999999999999999765 4678899999999999999999999999998555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK 221 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 221 (266)
. ..++.++..++++.+|+..|++++.++|++.++...+..+....+-...+
T Consensus 172 ~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a 222 (822)
T PRK14574 172 Y-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPA 222 (822)
T ss_pred H-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 4 45566666688887899999999999999999988777665554444333
No 132
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=6.8e-07 Score=78.16 Aligned_cols=100 Identities=15% Similarity=-0.013 Sum_probs=86.8
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...+...|..+...|++++|+..+.+++...|++.. ++..+|.++...|++++|+..+.+++.
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW-----------------AVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH-----------------HHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 344556788999999999999999999999998755 588999999999999999999999999
Q ss_pred CCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531 163 EDENNV----KALFRRGKARAELGQTDAAREDFLKAGKFAP 199 (266)
Q Consensus 163 l~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 199 (266)
..|.++ ..++.+|.++..+|++++|+..|++++...|
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 887433 3466899999999999999999999987777
No 133
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=1.7e-06 Score=75.66 Aligned_cols=148 Identities=13% Similarity=0.036 Sum_probs=111.2
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-----------chhHHHHHHHh---------hhhhhhhHHHH
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----------FGKYRDMALAV---------KNPCHLNMAAC 143 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------~~~~~~~~~~l---------~~~~~~n~a~~ 143 (266)
+.....|..++..|++++|+..+.++++..|.+...-. .+........+ ...++.++|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 34556788999999999999999999999998653210 11111111111 12245678899
Q ss_pred HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHHHHHHH
Q 024531 144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI----ARELRLLAEHEKAVY 219 (266)
Q Consensus 144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~----~~~l~~l~~~~~~~~ 219 (266)
+...|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|.++.. ...+..+...+++..
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998864432 335677766666665
Q ss_pred HHHHHHHhcccCC
Q 024531 220 KKQKEIYKGIFGP 232 (266)
Q Consensus 220 ~~~~~~~~k~~~~ 232 (266)
+.. ..|......
T Consensus 204 ~A~-~~~~~~~~~ 215 (355)
T cd05804 204 AAL-AIYDTHIAP 215 (355)
T ss_pred HHH-HHHHHHhcc
Confidence 554 446776543
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.56 E-value=9.4e-07 Score=77.84 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531 78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 157 (266)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~ 157 (266)
..+..+..+.++|..++..|+|++|+..|+++|+++|++... ..+++|+|.||..+|++++|+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA--------------~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA--------------QAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH--------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445668899999999999999999999999999999996531 125999999999999999999999
Q ss_pred HhHhcCC
Q 024531 158 SLVLGED 164 (266)
Q Consensus 158 ~~al~l~ 164 (266)
++|+++.
T Consensus 136 rrALels 142 (453)
T PLN03098 136 RTALRDY 142 (453)
T ss_pred HHHHHhc
Confidence 9999983
No 135
>PRK11906 transcriptional regulator; Provisional
Probab=98.55 E-value=2.2e-06 Score=75.61 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=98.6
Q ss_pred HHHHhHHHHhhc---cHHHHHHHHHHHH---hhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh---------hCH
Q 024531 86 RKMDGNALFKEE---KLEEAMQQYEMAI---AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL---------KRY 150 (266)
Q Consensus 86 ~~~~g~~~~~~g---~~~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~---------~~~ 150 (266)
++.+|...+..+ ....|+..|.+|+ .++|.... +|..+|.||+.. ..-
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~-----------------a~~~lA~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE-----------------CYCLLAECHMSLALHGKSELELAA 320 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH-----------------HHHHHHHHHHHHHHhcCCCchHHH
Confidence 345555554443 4667888999999 77777444 688888888775 135
Q ss_pred HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531 151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~ 230 (266)
.+|.....+|+++||.|+.+++.+|.++...++++.|...|++|+.++|+.+.+....+.+.-.-++.+++. ....+.+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~-~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR-ICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH-HHHHHHh
Confidence 678888899999999999999999999999999999999999999999999998888887654444444433 3356655
Q ss_pred CCCCC
Q 024531 231 GPRPE 235 (266)
Q Consensus 231 ~~~~~ 235 (266)
...|.
T Consensus 400 rLsP~ 404 (458)
T PRK11906 400 QLEPR 404 (458)
T ss_pred ccCch
Confidence 55443
No 136
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.55 E-value=6.2e-06 Score=73.57 Aligned_cols=128 Identities=12% Similarity=-0.010 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531 78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 157 (266)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~ 157 (266)
.+...+......|...+..|+|+.|.+...++-+..+.... .+...+.+..+.|+++.|..++
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l-----------------~~llaA~aA~~~g~~~~A~~~l 141 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVV-----------------NYLLAAEAAQQRGDEARANQHL 141 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHH-----------------HHHHHHHHHHHCCCHHHHHHHH
Confidence 35567777888999999999999999777765554322111 2444466668999999999999
Q ss_pred HhHhcCCCCchHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531 158 SLVLGEDENNVKA-LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 222 (266)
Q Consensus 158 ~~al~l~p~~~~a-~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 222 (266)
.++.+.+|++..+ ....+..+...|++++|...++++.+.+|+|+.+...+..++...++-.+..
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999987544 3456999999999999999999999999999999999998887776665444
No 137
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=7.2e-06 Score=68.89 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=35.1
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
-.-+|.+++..|+|..|++.+..+++.||... .+.-.+..||.++|+.++....+.++.+..++
T Consensus 217 si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 217 SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 34455555555555555555555555555542 44445555555555555555555555555544
No 138
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=7.6e-07 Score=74.81 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=88.6
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchh-------HHHHHH---------HhhhhhhhhHHHHHHHhhCH
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK-------YRDMAL---------AVKNPCHLNMAACLLKLKRY 150 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~-------~~~~~~---------~l~~~~~~n~a~~~~~~~~~ 150 (266)
.+.|.+++..|-+.+|.+.++.+|...|....+-...+ ....+. ...+..+...|.++..++++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 46799999999999999999999998876432211000 000000 11233455667777777777
Q ss_pred HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531 151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV 218 (266)
Q Consensus 151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 218 (266)
++|++.|+.+++++|.|.++.-..|.-|+.-++.+-|+.+|+++|++.-.+++...+++.|--.-++.
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 77777777777777777777777777777777777777777777777777777777777764444443
No 139
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.52 E-value=7.5e-06 Score=62.37 Aligned_cols=114 Identities=22% Similarity=0.178 Sum_probs=89.5
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-----chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 157 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~ 157 (266)
...+...|......++...++..+.+++.+...+..... ..............+...++..+...|+++.|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 445556677778889999999999999998765443322 223444566677778889999999999999999999
Q ss_pred HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
.+++..+|.+..++..+-.+|..+|++.+|+..|+++..
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998754
No 140
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=3.1e-06 Score=71.04 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=109.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccc--hhh---hh--chhHHHH-------H-------
Q 024531 71 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD--FMF---QL--FGKYRDM-------A------- 129 (266)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~--~~~---~~--~~~~~~~-------~------- 129 (266)
+.+.+.+++ .-.+.++|..|+..|-++.|...|....+...-. ... .. ....++. +
T Consensus 98 spdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 98 SPDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred CCCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 344455444 5567788999999999999999888876622110 000 00 0011111 0
Q ss_pred -HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHH
Q 024531 130 -LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KSIARE 207 (266)
Q Consensus 130 -~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~ 207 (266)
.-.....|..+|..+....+.+.|...+.+|+..||+...|-..+|.++...|+|+.|++.++.+++-||+. +++...
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 111233577888888889999999999999999999999999999999999999999999999999999984 778888
Q ss_pred HHHHHHHHHHHHHHHH
Q 024531 208 LRLLAEHEKAVYKKQK 223 (266)
Q Consensus 208 l~~l~~~~~~~~~~~~ 223 (266)
|..++..+++..+-..
T Consensus 255 L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 255 LYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHhCCHHHHHH
Confidence 8888877776654443
No 141
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=2.4e-06 Score=78.34 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh----------hhchhHHHHHHHhhhhhhhhHHHHHHHh
Q 024531 78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF----------QLFGKYRDMALAVKNPCHLNMAACLLKL 147 (266)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~n~a~~~~~~ 147 (266)
...+....+-....+|...|+-.+|...-.+-++.+|+...+ ...++..+-.+..+..+...+|......
T Consensus 419 ~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~ 498 (777)
T KOG1128|consen 419 VIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSN 498 (777)
T ss_pred HHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccc
Confidence 334556666667778888888888888877777744443222 1233344445566666667777777778
Q ss_pred hCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 148 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 224 (266)
Q Consensus 148 ~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 224 (266)
++|.++.++++..++++|-....||.+|.|..++++++.|..+|..++.++|+|.++++++...+.+.++..++-+.
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988777665554444
No 142
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.50 E-value=1.9e-06 Score=78.11 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
+.........|..++.+|+|+.|+..+..|++..-...- .. .........++|..|..++++.+|+..|++
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-----~~----hl~va~~l~~~a~~y~~~~k~~eAv~ly~~ 266 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-----LK----HLVVASMLNILALVYRSLGKYDEAVNLYEE 266 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-----cc----CHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344555566999999999999999999999998321100 00 001122345799999999999999999999
Q ss_pred HhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHH
Q 024531 160 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-----PEDKSIARELRLL 211 (266)
Q Consensus 160 al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----p~~~~~~~~l~~l 211 (266)
|+.+ +|....++.++|.+|...|+|++|..++++|+++- ...+++...+..+
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 9955 55567789999999999999999999999999974 3345555555444
No 143
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.50 E-value=2e-06 Score=76.75 Aligned_cols=129 Identities=12% Similarity=-0.044 Sum_probs=102.8
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
........+..+...|+.+.|.....+++...++ .. +. +.......+++++++..+++.+
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~-----------------l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ER-----------------LV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HH-----------------HH--HHHhhccCCChHHHHHHHHHHH
Confidence 4445566788999999999999999999995443 22 11 1222234589999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531 162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP 232 (266)
Q Consensus 162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~ 232 (266)
+.+|+++..++.+|.++...++|++|.+.|+++++.+|++.... .+..+...+++.+++ ...|++-+..
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~~~g~~~~A-~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALDRLHKPEEA-AAMRRDGLML 390 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHHHHhh
Confidence 99999999999999999999999999999999999999977644 688887777776555 5557776554
No 144
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.49 E-value=1.1e-05 Score=66.02 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=100.4
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+..+++.|...++.|+|.+|++.|.......|..+. ...+...++.++++.++++.|+...++-+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~--------------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY--------------SEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc--------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 778999999999999999999999999999988654 233788999999999999999999999999
Q ss_pred CCCCchH---HHHHHHHHHHHcCCH--------HHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHH
Q 024531 163 EDENNVK---ALFRRGKARAELGQT--------DAAREDFLKAGKFAPED---KSIARELRLLAEHEKAV 218 (266)
Q Consensus 163 l~p~~~~---a~~~~g~~~~~~g~~--------~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~~~~ 218 (266)
+.|.++. ++|.+|.+++..=+. .+|...|+..+.--|+. +++...+..+...+.+.
T Consensus 100 lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 100 LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9998764 688899998755433 78999999999999986 45555555554444443
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.47 E-value=1.3e-06 Score=73.11 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=80.9
Q ss_pred hhhhHHHHH-HHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 024531 136 CHLNMAACL-LKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIAREL 208 (266)
Q Consensus 136 ~~~n~a~~~-~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l 208 (266)
..++.|..+ ++.|+|++|+..|+..+...|++ +.++|++|.+|+..|+|++|+..|++++...|++ ++++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 567788876 56799999999999999999998 5899999999999999999999999999999985 5666666
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 209 RLLAEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 209 ~~l~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
+.+...++.. ++.+..|.++....|...
T Consensus 224 g~~~~~~g~~-~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDT-AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHHCcCCH
Confidence 6666555444 455555777776555543
No 146
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.2e-07 Score=73.66 Aligned_cols=53 Identities=36% Similarity=0.683 Sum_probs=50.0
Q ss_pred CccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531 7 KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62 (266)
Q Consensus 7 ~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~ 62 (266)
++||+|||.++..|+.|-+..++|.|.++||..|. +.||||+++.|.|+|+.+
T Consensus 173 g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~---~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 173 GEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGV---PEIPPNSTLVFDVELLSV 225 (226)
T ss_pred CCCCchHHHhhhhhccCCeeEEEeCccccccccCc---CcCCCCCcEEEEEEEEec
Confidence 47999999999999999999999999999999997 689999999999999865
No 147
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.43 E-value=4.3e-07 Score=51.01 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
+++|+++|.+|..+|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3678888888888888888888888888888864
No 148
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.43 E-value=1.6e-05 Score=64.25 Aligned_cols=117 Identities=19% Similarity=0.125 Sum_probs=90.8
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-----------HH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-----------YE 151 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-----------~~ 151 (266)
.+.....|..+++.|+|..|+..|++.+...|.... ...+++.+|.+++.+.. ..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~--------------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~ 107 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK--------------ADYALYMLGLSYYKQIPGILRSDRDQTSTR 107 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT--------------HHHHHHHHHHHHHHHHHHHH-TT---HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--------------hhhHHHHHHHHHHHhCccchhcccChHHHH
Confidence 345678899999999999999999999999998654 23368888888776543 45
Q ss_pred HHHHHHHhHhcCCCCchH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531 152 EAIGQCSLVLGEDENNVK-----------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 213 (266)
Q Consensus 152 ~A~~~~~~al~l~p~~~~-----------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 213 (266)
+|+..++..+...|++.. --+..|.-|.+.|.|..|+.-++.+++--|+.+.+...|..+.+
T Consensus 108 ~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 108 KAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 899999999999998632 24457999999999999999999999999998766666655543
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=2.5e-06 Score=75.16 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=72.2
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV 168 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 168 (266)
.+..+...++-.+|++...+++...|.+.. ++...|..++..++++.|+..+++++.+.|++.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~-----------------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSE-----------------LLNLQAEFLLSKKKYELALEIAKKAVELSPSEF 268 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH
Confidence 355555556666666666666666655433 567788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 169 KALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
+.|+.++.||..+|+|+.|+..++.+--..+.+
T Consensus 269 ~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 269 ETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 999999999999999999998877655443333
No 150
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.40 E-value=6.5e-06 Score=75.97 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=110.6
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
...|..+...+.-++|.....++-.++|.... .|+.+|.++...|.+.+|...|..|+.+||+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~-----------------~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSAS-----------------VYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHH-----------------HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 34566666777788888899999888887555 5899999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 167 NVKALFRRGKARAELGQTDAARE--DFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 167 ~~~a~~~~g~~~~~~g~~~~A~~--~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
++.+...+|.++...|+-.-|.. .+..+++++|.|.+++..++.+.+.++...++..- |.....
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec-f~aa~q 782 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC-FQAALQ 782 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH-HHHHHh
Confidence 99999999999999999988888 99999999999999999999999888888766655 444443
No 151
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.39 E-value=6.7e-06 Score=60.36 Aligned_cols=91 Identities=20% Similarity=0.097 Sum_probs=75.9
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDEN---NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELR 209 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~ 209 (266)
+.+++|.++..+|+.++|+..|++++..... ...++..+|.++..+|++++|+..++.++.-.|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 6889999999999999999999999987544 3578999999999999999999999999999898 777777767
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024531 210 LLAEHEKAVYKKQKEIY 226 (266)
Q Consensus 210 ~l~~~~~~~~~~~~~~~ 226 (266)
.+....++..+.-....
T Consensus 83 l~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 66555566555555443
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.39 E-value=5.9e-06 Score=70.24 Aligned_cols=109 Identities=21% Similarity=0.188 Sum_probs=84.5
Q ss_pred HHHHHHHHHhHHHHhh-ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 81 GAADRRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
..+..+...|..+... |+++.|+..|++|+++...... ......++.++|.++.++|+|++|+..|.+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-----------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-----------PHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4467777889999888 9999999999999998754322 112344788999999999999999999999
Q ss_pred HhcCCCC------ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 160 VLGEDEN------NV-KALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 160 al~l~p~------~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
+....-+ +. ..++..+.|+...||+..|...+++....+|.
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8764322 23 34578899999999999999999999999985
No 153
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.39 E-value=1e-06 Score=52.66 Aligned_cols=42 Identities=29% Similarity=0.318 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 169 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567788888888888888888888888888888888776654
No 154
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.36 E-value=1.1e-06 Score=49.15 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
+++++.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999986
No 155
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.36 E-value=1.2e-06 Score=74.13 Aligned_cols=98 Identities=17% Similarity=0.049 Sum_probs=82.1
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
+-..|.-|+++|.|++|+++|.+++.++|.|+-.+.++|.+|+.+..|..|..++..|+.++.....+....+.....++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999999999999999877666655555555555
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 024531 217 AVYKKQKEIYKGIFGPRPE 235 (266)
Q Consensus 217 ~~~~~~~~~~~k~~~~~~~ 235 (266)
... +.++++..++...++
T Consensus 180 ~~~-EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNM-EAKKDCETVLALEPK 197 (536)
T ss_pred hHH-HHHHhHHHHHhhCcc
Confidence 544 445567888877666
No 156
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.34 E-value=4.7e-07 Score=50.88 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=31.6
Q ss_pred HHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 024531 156 QCSLVLGEDENNVKALFRRGKARAELGQTDAARE 189 (266)
Q Consensus 156 ~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~ 189 (266)
.|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.32 E-value=1.1e-05 Score=71.11 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=97.9
Q ss_pred hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531 96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG 175 (266)
Q Consensus 96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g 175 (266)
.++++.|+..+.+....+|+ +...+|.+++..++..+|+...++++...|.+...+...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe--------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa 241 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE--------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQA 241 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc--------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46789999999998888776 3556899999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531 176 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 222 (266)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 222 (266)
..+...++++.|+...+++..+.|++...+..|+.++...++.+.+.
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999888887763
No 158
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.32 E-value=3.3e-05 Score=60.23 Aligned_cols=148 Identities=13% Similarity=0.157 Sum_probs=109.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhh-ccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYM-GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
......+|+.+...|++.+|..+|++++.-. ..+.. .+..+|.+.+..+++..|...+++..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-----------------~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-----------------MLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-----------------HHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 4455678999999999999999999999753 23332 58899999999999999999999999
Q ss_pred cCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531 162 GEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239 (266)
Q Consensus 162 ~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 239 (266)
+.+|. .+..+...|.++..+|.+.+|...|+.++...|+ +.++.........+.+..+...+ |..+++... ...
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq-~~~v~d~~~--r~~ 227 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ-YVAVVDTAK--RSR 227 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHH--hcc
Confidence 99885 5678888999999999999999999999999998 55555566655555544333333 344442111 111
Q ss_pred chhHHHhHHHHH
Q 024531 240 KNWLIIFWQLLV 251 (266)
Q Consensus 240 ~~~~~~~~~~~~ 251 (266)
.-|++..-.|+.
T Consensus 228 ~H~rkh~reW~~ 239 (251)
T COG4700 228 PHYRKHHREWIK 239 (251)
T ss_pred hhHHHHHHHHHH
Confidence 345555555544
No 159
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.31 E-value=1.2e-06 Score=70.57 Aligned_cols=53 Identities=28% Similarity=0.498 Sum_probs=49.9
Q ss_pred ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531 8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62 (266)
Q Consensus 8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~ 62 (266)
.+|+||+.+|..|+.|+...|.|+|..+||..|. .+.|||+++++|+|+|.++
T Consensus 153 ~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~--~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 153 GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA--GASIPPFSTLVFEVELLEI 205 (206)
T ss_pred chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC--CCCcCCCCeEEEEEEEEEE
Confidence 5899999999999999999999999999999997 5789999999999999875
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=6.8e-06 Score=71.02 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=87.5
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...+.+.+.++.+.++|..|+...+++|.+.|++.. +++-+|.++..+|+|+.|+.+|++|++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K-----------------ALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK-----------------ALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh-----------------HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445678899999999999999999999999999544 799999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCC
Q 024531 163 EDENNVKALFRRGKARAELGQTDAA-REDFLKAGKFAP 199 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A-~~~~~~al~l~p 199 (266)
++|+|-.+...+..|.....++.+. .+.|.+.+..-+
T Consensus 320 ~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 320 LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999998888899888888877666 666777776544
No 161
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=5.5e-06 Score=65.14 Aligned_cols=100 Identities=22% Similarity=0.144 Sum_probs=82.6
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN-----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
+-.-|.-+++.|+|.+|..-|..||.+.|.- ...|.++|.|+++++.++.|+.++.++++++|.+..++.-.+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3345777889999999999999999999864 34677999999999999999999999999999988887766777
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 212 AEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 212 ~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
+.....++.+ -.+|++++...|...
T Consensus 178 yek~ek~eea-leDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEA-LEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHH-HHHHHHHHHhCcchH
Confidence 7777555544 456899998766554
No 162
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.5e-05 Score=67.74 Aligned_cols=152 Identities=13% Similarity=0.044 Sum_probs=73.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHHHHH--hhhhhhhhHHHHHHHhh---
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMALA--VKNPCHLNMAACLLKLK--- 148 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~~~--l~~~~~~n~a~~~~~~~--- 148 (266)
....+.-.|+.+.+.++..+|+-.|..|+.+.|...... -.+...+.+.. -...++-+-|.++.-.|
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV 412 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee
Confidence 345566678888888888888888888888877643320 01111110000 00111111122222222
Q ss_pred ------CHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531 149 ------RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 222 (266)
Q Consensus 149 ------~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 222 (266)
.-++|...++++|+++|.+..|...+|..+..-|.+.+++..++++|...|+. ..+..|+.+-....+..++-
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHH
Confidence 13456666666666666665555555555555555555555555555544442 22333444433343333333
Q ss_pred HHHHhcccCCCCC
Q 024531 223 KEIYKGIFGPRPE 235 (266)
Q Consensus 223 ~~~~~k~~~~~~~ 235 (266)
.. |++.+...|.
T Consensus 492 ~~-y~~ALr~dP~ 503 (564)
T KOG1174|consen 492 EY-YYKALRQDPK 503 (564)
T ss_pred HH-HHHHHhcCcc
Confidence 22 3444444333
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.29 E-value=8.8e-06 Score=74.63 Aligned_cols=36 Identities=6% Similarity=-0.142 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL 171 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 171 (266)
+|..+|.++...|++++|+..|.+|+.++|.++..+
T Consensus 455 a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 455 NYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 688889999999999999999999999999888533
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.29 E-value=4.7e-06 Score=70.93 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=81.9
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHH--Hhh--CHHHHHHHHHhHhcCCCC
Q 024531 91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLL--KLK--RYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~--~~~--~~~~A~~~~~~al~l~p~ 166 (266)
.++...++++.|.+.+...-+.+.+. ...+++.++. ..| .+.+|...|+......|.
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~-------------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDS-------------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCH-------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcH-------------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 34455566666666665555444332 3445554443 344 588999999998888788
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531 167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 229 (266)
Q Consensus 167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~ 229 (266)
++..+..++.|++.+|+|++|.+.++.++..+|+++++..++..+...+++..+...+....+
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 889999999999999999999999999999999999999998888777666644444444443
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=98.26 E-value=4.7e-06 Score=63.83 Aligned_cols=95 Identities=12% Similarity=-0.114 Sum_probs=84.9
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
..+..|.-++..|++++|...|+-...+||.+++.++.+|.|+..+++|++|+..|..+..++++|+......+.|.-.+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 36678889999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHhcccC
Q 024531 216 KAVYKKQKEIYKGIFG 231 (266)
Q Consensus 216 ~~~~~~~~~~~~k~~~ 231 (266)
++...+... |.-+..
T Consensus 119 ~~~~~A~~~-f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQC-FELVNE 133 (165)
T ss_pred CCHHHHHHH-HHHHHh
Confidence 887766665 444444
No 166
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.25 E-value=3.6e-05 Score=70.39 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=70.0
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
++.+|+.|...|++++|+.+.++||...|..++.|+..|.++-..|++.+|.+.++.|..+|+.|.-+......-.-+-+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 35668888888888888888888888888888888888888888888888888888888888887666555554433344
Q ss_pred HHHHHHHHHHhcccCCCC
Q 024531 217 AVYKKQKEIYKGIFGPRP 234 (266)
Q Consensus 217 ~~~~~~~~~~~k~~~~~~ 234 (266)
+.+++.+- . .+|....
T Consensus 277 ~~e~A~~~-~-~~Ftr~~ 292 (517)
T PF12569_consen 277 RIEEAEKT-A-SLFTRED 292 (517)
T ss_pred CHHHHHHH-H-HhhcCCC
Confidence 44434333 2 4554433
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.25 E-value=7.9e-06 Score=72.22 Aligned_cols=89 Identities=9% Similarity=-0.070 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531 97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 176 (266)
Q Consensus 97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 176 (266)
.+-.+|.+.-.+|++++|.++. ++..+|.+....++++.|+..+++|+.++|+.+.++|..|.
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~-----------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGK-----------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 4567788889999999999876 68899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 177 ARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 177 ~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
++...|+.++|.+.++++++++|.-.
T Consensus 381 ~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 381 VHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999999743
No 168
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=9.7e-06 Score=70.21 Aligned_cols=137 Identities=12% Similarity=0.006 Sum_probs=115.3
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
.+.--|..+|...+|..|+..-.++|+.+|.... ++...|..+..+++..+|+-.|+.|..+.
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~-----------------alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE-----------------ALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch-----------------HHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 3344577788889999999999999999998544 68889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR-LLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 238 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~-~l~~~~~~~~~~~~~~~~k~~~~~~~~~~ 238 (266)
|.+...|--+-.+|...|.+.+|...-+.++..-|.+...+..++ .+.----..+++.++.+.+-+...|.-.+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 999999999999999999999999999999999999999988885 44444445566777888888776665443
No 169
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.20 E-value=2.5e-05 Score=75.00 Aligned_cols=112 Identities=13% Similarity=0.017 Sum_probs=92.6
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh--
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL-- 161 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al-- 161 (266)
..++.+|.+|-+.|++++|...|.++|+++|+++. +++|+|..|... +.++|+.++.+|+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~-----------------aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE-----------------IVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-----------------HHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999998766 577788777777 7777777777766
Q ss_pred ------------------cCCCCchHHHH--------HHH------------HHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531 162 ------------------GEDENNVKALF--------RRG------------KARAELGQTDAAREDFLKAGKFAPEDKS 203 (266)
Q Consensus 162 ------------------~l~p~~~~a~~--------~~g------------~~~~~~g~~~~A~~~~~~al~l~p~~~~ 203 (266)
..+|++...++ .++ .+|...++|++++..++.+|+++|.|.-
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 44555544322 224 8889999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 024531 204 IARELRLLAE 213 (266)
Q Consensus 204 ~~~~l~~l~~ 213 (266)
++..+..++.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 9999999875
No 170
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=3.9e-05 Score=67.29 Aligned_cols=136 Identities=17% Similarity=0.042 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh-----hchhHHHHHHHh------------hhhhhhhHHH
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-----LFGKYRDMALAV------------KNPCHLNMAA 142 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----~~~~~~~~~~~l------------~~~~~~n~a~ 142 (266)
...++.+.+.+++|-...+..+|++.|.++..+.|+++..- ....+-+..+.+ .+...-.+|.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 45677788889999999999999999999999999876541 000000111111 1234557888
Q ss_pred HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
.|+...-|++|+.++++|--+.|+-.+.....+.|+...|+|.+|...|+..-+--|.|.++++.|.++..-+
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999988875443
No 171
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00019 Score=58.62 Aligned_cols=126 Identities=14% Similarity=-0.035 Sum_probs=108.6
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
+........|+.+.|...+++.....|.+.. +...-|.-+-..|.|++|+++|+..|.-||.|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~R-----------------V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~ 119 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKR-----------------VGKLKAMLLEATGNYKEAIEYYESLLEDDPTD 119 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChh-----------------HHHHHHHHHHHhhchhhHHHHHHHHhccCcch
Confidence 3445566778889999999998888888654 35566888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~ 230 (266)
.-.+-+.--+.-.+|.--+|++.+...+..-++|.+++..+..++-..+..+++.-.+-.-++
T Consensus 120 ~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 120 TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999888899999999999999999999999999999999999999999888777544444
No 172
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.16 E-value=1.8e-05 Score=49.00 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 169 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
+.+|.+|.+++++|+|++|..+.+.+|+++|+|..+......+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999988777665443
No 173
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.15 E-value=2.2e-05 Score=64.76 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=83.5
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELRL 210 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~ 210 (266)
.++.|.-+++.|+|..|..-|..-+...|++ +.|+|++|.+++.+|+|++|...|..+.+-.|.+ ++++..|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999986 5799999999999999999999999999999876 466666666
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531 211 LAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239 (266)
Q Consensus 211 l~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 239 (266)
+..++++. ++.+..|..+....|...+.
T Consensus 224 ~~~~l~~~-d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNT-DEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCH-HHHHHHHHHHHHHCCCCHHH
Confidence 65555554 44555677776665655443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.12 E-value=5.3e-05 Score=64.39 Aligned_cols=139 Identities=18% Similarity=0.051 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
...++.+..-|+.+-..++|.+|...|.++..+.-.... ..-...+|.+.+.+|.+. ++.+|+.++++
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~ 99 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD-----------KFEAAKAYEEAANCYKKG-DPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence 455777777888888899999999999999887643211 111334678888888666 99999999999
Q ss_pred HhcCC-----CC-chHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 160 VLGED-----EN-NVKALFRRGKARAEL-GQTDAAREDFLKAGKFAPE--D----KSIARELRLLAEHEKAVYKKQKEIY 226 (266)
Q Consensus 160 al~l~-----p~-~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~--~----~~~~~~l~~l~~~~~~~~~~~~~~~ 226 (266)
|+.+. |. -.+++.++|.+|... |++++|++.|++|+.+-.. . ..+...++.+....+++.++-.. |
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~-~ 178 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI-Y 178 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH-H
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH-H
Confidence 99762 11 146788999999999 9999999999999997332 2 34555666666667777655444 6
Q ss_pred hcccC
Q 024531 227 KGIFG 231 (266)
Q Consensus 227 ~k~~~ 231 (266)
.++..
T Consensus 179 e~~~~ 183 (282)
T PF14938_consen 179 EEVAK 183 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.11 E-value=0.00017 Score=59.86 Aligned_cols=118 Identities=12% Similarity=-0.014 Sum_probs=93.5
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-------------
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR------------- 149 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~------------- 149 (266)
.......|..+++.++|..|+..|++.+...|+.+.. ..+++.+|.++..++.
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~--------------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~ 134 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--------------DYVLYMRGLTNMALDDSALQGFFGVDRSD 134 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch--------------HHHHHHHHHhhhhcchhhhhhccCCCccc
Confidence 3446788999999999999999999999999987652 2368888888755541
Q ss_pred -----HHHHHHHHHhHhcCCCCchH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024531 150 -----YEEAIGQCSLVLGEDENNVK-----------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE 207 (266)
Q Consensus 150 -----~~~A~~~~~~al~l~p~~~~-----------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 207 (266)
..+|+..+++.+...|++.- --+..|.-|.+.|.|..|+.-++.+++--|+.+.....
T Consensus 135 rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ea 214 (243)
T PRK10866 135 RDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDA 214 (243)
T ss_pred cCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHH
Confidence 35788999999999998631 23456888999999999999999999999987766666
Q ss_pred HHHHHHH
Q 024531 208 LRLLAEH 214 (266)
Q Consensus 208 l~~l~~~ 214 (266)
|..+...
T Consensus 215 l~~l~~a 221 (243)
T PRK10866 215 LPLMENA 221 (243)
T ss_pred HHHHHHH
Confidence 6655433
No 176
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.11 E-value=3.3e-06 Score=47.33 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
+++++|.+|..+|++++|+.+|+++|+++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 68999999999999999999999999999975
No 177
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.10 E-value=5.3e-06 Score=49.54 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 176 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 176 (266)
++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57899999999999999999999999999999999999885
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.10 E-value=8e-05 Score=68.16 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh------------chh-HH--------------------
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL------------FGK-YR-------------------- 126 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~------------~~~-~~-------------------- 126 (266)
+.....+..+|..+++.|++++|...|...|+.+|++..+-. ..+ ..
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~ 114 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR 114 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh
Confidence 455667778899999999999999999999999987643300 000 00
Q ss_pred ---------H-----------------------HHHHh-----hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc--
Q 024531 127 ---------D-----------------------MALAV-----KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN-- 167 (266)
Q Consensus 127 ---------~-----------------------~~~~l-----~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~-- 167 (266)
+ .++.+ ...+...+..-|...-.......... .-...|..
T Consensus 115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~-~~~~~~p~~~ 193 (517)
T PF12569_consen 115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD-DEEKEPPSTL 193 (517)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc-ccccCCchHH
Confidence 0 00111 12355566666655443333332222 22233333
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 224 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 224 (266)
.+++|.+|+.|-.+|++++|+.++++|++..|..++....-+++.+..+...++...
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999999999999999999999999999999999998888877776664
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.07 E-value=5e-05 Score=69.11 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=84.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
..+.+--.|..+...|+-++|...-..++..++.+.. |+.-+|..+..-++|++|+++|+.|+
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v-----------------CwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV-----------------CWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCcccch-----------------hHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3444555677777777777777777777776666443 56677777777777777777777777
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531 162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 220 (266)
Q Consensus 162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 220 (266)
.++|+|...+..++....++++|+.....-.+.+++.|++-..+-.++......+++..
T Consensus 103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766666555555444444433
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.04 E-value=8.8e-05 Score=70.56 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=106.7
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh-----h--chhHHHHHHH------------hhhhhhhhHHHHHH
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-----L--FGKYRDMALA------------VKNPCHLNMAACLL 145 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----~--~~~~~~~~~~------------l~~~~~~n~a~~~~ 145 (266)
.+--+|..|...-+...|...|.+|.++++.+.... . ..+..++... ........+|..|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 334456666666677888889999998888654320 0 1112222111 11123345899999
Q ss_pred HhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 146 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 224 (266)
Q Consensus 146 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 224 (266)
..+++.+|+..++.|++.+|.+..+|.-+|.+|...|.|.-|++.|.+|..++|.+.-.+...+.+....+++++.-..
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988887777777777777665544
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.03 E-value=6.2e-06 Score=71.39 Aligned_cols=110 Identities=16% Similarity=0.191 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
..+...+-.+||.||-.|+|+.|+..-+.-|.+.....+ ..-...++.|+|.||.-+|+++.|+++|+.
T Consensus 192 ~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-----------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 192 LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-----------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-----------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 334444556689999999999999998888877654322 222455899999999999999999999998
Q ss_pred HhcCC----CC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 160 VLGED----EN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 160 al~l~----p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
++.+. .. ....-|.+|.+|.-+.++++|+.++++-|.+..+
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76442 22 3456789999999999999999999998887644
No 182
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.03 E-value=1.2e-05 Score=67.32 Aligned_cols=57 Identities=28% Similarity=0.510 Sum_probs=51.8
Q ss_pred ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccccc
Q 024531 8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 67 (266)
Q Consensus 8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~ 67 (266)
++|+||+.+|..|+.|+...|.|++.++||..|. +.+||++.++|+|+|.++.....
T Consensus 197 ~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~---~gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 197 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC---CCCCCCCcEEEEEEEEEeccCcc
Confidence 5899999999999999999999999999999886 47999999999999999866543
No 183
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=3.8e-05 Score=65.49 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=79.9
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHH
Q 024531 91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA 170 (266)
Q Consensus 91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 170 (266)
..+..+.||..|+..+.-.+.......+ .+-..+|.|++.+|+|++|+..|..+...+..+.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~----------------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el 93 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEED----------------SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL 93 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhH----------------HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence 3456778999999998877755443221 146689999999999999999999999888778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 171 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 171 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
..++|.|++.+|.|.+|.....+| |.++-....|-.+
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHL 130 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHH
Confidence 999999999999999998876655 6666555555444
No 184
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.02 E-value=7.9e-05 Score=63.47 Aligned_cols=92 Identities=23% Similarity=0.255 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHH
Q 024531 98 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA 177 (266)
Q Consensus 98 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 177 (266)
.+.+|.-.|++..+..+..+. +++.+|.|++.+|+|++|...+.+++..+|+++.++.++..+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~-----------------~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPK-----------------LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHH-----------------HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHH-----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 588999999997666555433 578899999999999999999999999999999999999999
Q ss_pred HHHcCCH-HHHHHHHHHHHhhCCCCHHHHH
Q 024531 178 RAELGQT-DAAREDFLKAGKFAPEDKSIAR 206 (266)
Q Consensus 178 ~~~~g~~-~~A~~~~~~al~l~p~~~~~~~ 206 (266)
...+|+. +.+.+.+.+....+|+++-+..
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 9999999 6677888888889999886543
No 185
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.01 E-value=0.00029 Score=64.53 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=111.3
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhh-------hhchhHHHHHHHhhhh---------hhhhHHHHHHHhhCHHHH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLFGKYRDMALAVKNP---------CHLNMAACLLKLKRYEEA 153 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------~~~~~~~~~~~~l~~~---------~~~n~a~~~~~~~~~~~A 153 (266)
+...+..|+...|......+++..|++... +....+-+....+... ++..-+....-++..++|
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHH
Confidence 566778899999999999999999986433 1111122223333322 445555556668899999
Q ss_pred HHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531 154 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR 233 (266)
Q Consensus 154 ~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~ 233 (266)
+..|+.+|+..|+..+.|..+|+++.++++.+.|.+.|...+..-|+....+-.|..+.++..... +.+..+.+.. .
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~-rAR~ildrar--l 747 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV-RARSILDRAR--L 747 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh-hHHHHHHHHH--h
Confidence 999999999999999999999999999999999999999999999999999999998877765443 3333344422 2
Q ss_pred CCCcccchhH
Q 024531 234 PEPKQKKNWL 243 (266)
Q Consensus 234 ~~~~~~~~~~ 243 (266)
+.|+....|+
T Consensus 748 kNPk~~~lwl 757 (913)
T KOG0495|consen 748 KNPKNALLWL 757 (913)
T ss_pred cCCCcchhHH
Confidence 3444344554
No 186
>PRK10941 hypothetical protein; Provisional
Probab=97.97 E-value=9.9e-05 Score=61.90 Aligned_cols=77 Identities=22% Similarity=0.145 Sum_probs=70.8
Q ss_pred HhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024531 131 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE 207 (266)
Q Consensus 131 ~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 207 (266)
.+....+.|+=.+|++.++++.|+.+.+..+.++|+++.-+..+|.+|.++|.+..|..+++..++..|+++.+...
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555688999999999999999999999999999999999999999999999999999999999999999877643
No 187
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.97 E-value=1.5e-05 Score=44.53 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 169 KALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
++++.+|.+|..+|++++|..+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578889999999999999999999999988854
No 188
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.95 E-value=8e-05 Score=64.75 Aligned_cols=116 Identities=11% Similarity=0.169 Sum_probs=92.9
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
+........|...|++++|..|+..|..+|+++........ .....+....+..-+-..+..||+++++.+.|+.+..+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 34555567788999999999999999999999976443322 22222333344444567899999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
.|-++|.+...|.+.|.|+..+.+|.+|.+.+.-+.-
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988766544
No 189
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.95 E-value=4e-05 Score=72.80 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=100.1
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
..+..+|..+...+++..|+..|+.+++.+|.+.. +...+|.+|...|++.-|++.+++|..+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n-----------------~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN-----------------LWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHH-----------------HHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 34455899999999999999999999999999766 6899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531 164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 213 (266)
Q Consensus 164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 213 (266)
+|.+.-+.|..+.....+|+|.+|+..+..++.-......++..+..+.-
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~i 675 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVI 675 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999876665656655655543
No 190
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.92 E-value=0.0018 Score=46.77 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=76.9
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc----
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG---- 162 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~---- 162 (266)
...|...+..|-|.+|...|.+|.+.....+.-+.++. ..+-.-||..++-++..+|+|++++.....+|.
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh-----~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDH-----DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---H-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccc-----ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 45667778889999999999999987544322111110 223344888999999999999999888888874
Q ss_pred ---CCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 163 ---EDEN----NVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 163 ---l~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
++.+ .+.+.|++|.++..+|..++|+..|+.+-+.
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4443 3568899999999999999999999988653
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00033 Score=57.64 Aligned_cols=130 Identities=18% Similarity=0.097 Sum_probs=99.0
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh-------------------hhchhHHH---HHH--HhhhhhhhhH
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------------------QLFGKYRD---MAL--AVKNPCHLNM 140 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------------~~~~~~~~---~~~--~l~~~~~~n~ 140 (266)
..+...+.+...++|.-++..|.+.++.+|..... ...+..+. .+. .....++.|.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44567788888899999999999999987542111 00111111 111 1224467888
Q ss_pred HHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHH
Q 024531 141 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELRLLAEH 214 (266)
Q Consensus 141 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~l~~~ 214 (266)
+.+|...+++..|...+.+.+..||.++.+..+.|.|++.+|+..+|++.++.++...|. +..+..+|..+++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 44555556655443
No 192
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=2.5e-05 Score=63.02 Aligned_cols=87 Identities=17% Similarity=0.085 Sum_probs=74.7
Q ss_pred hhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024531 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA 217 (266)
Q Consensus 138 ~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 217 (266)
..-|.+++.-..|..|+..|.+||.++|..+..+.+++.||+++.+|+.+..+..++++++|+.......++......+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34567777888999999999999999999999999999999999999999999999999999999888888887555555
Q ss_pred HHHHHHH
Q 024531 218 VYKKQKE 224 (266)
Q Consensus 218 ~~~~~~~ 224 (266)
+...-+.
T Consensus 94 ~~eaI~~ 100 (284)
T KOG4642|consen 94 YDEAIKV 100 (284)
T ss_pred ccHHHHH
Confidence 5444433
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.89 E-value=6.4e-05 Score=56.38 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=64.3
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA 205 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 205 (266)
.+++.|...++.|+|.+|+..++.+..-.|.. ..+.+.+|.+|+..++|++|+..+++-++++|.++.+-
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 48899999999999999999999999888865 57899999999999999999999999999999987554
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.86 E-value=0.00021 Score=52.59 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=70.8
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHH--HHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK--SIAR--ELRLLA 212 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~--~l~~l~ 212 (266)
+-..|.+....|+.+.|++-|.++|.+.|.++.+|.++++++.-+|+.++|+.++++++++..+.. .... .-+.++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 445678888899999999999999999999999999999999999999999999999999976532 2222 222333
Q ss_pred HHHHHHHHHHHHHHhccc
Q 024531 213 EHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 213 ~~~~~~~~~~~~~~~k~~ 230 (266)
. +....++.+.+|...-
T Consensus 126 R-l~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 126 R-LLGNDDAARADFEAAA 142 (175)
T ss_pred H-HhCchHHHHHhHHHHH
Confidence 3 3333445555565543
No 195
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=2.4e-05 Score=43.55 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
++..+|.+++.+|++++|+.+|++++.++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 58899999999999999999999999999975
No 196
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00068 Score=56.70 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=82.5
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh----
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL---- 159 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~---- 159 (266)
+.....+..+...|++.+|...|..++...|.... +...++.||...|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~-----------------~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSE-----------------AKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccch-----------------HHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 33456788899999999999999999999998654 577788888888888766665532
Q ss_pred ------------------------------HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 024531 160 ------------------------------VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARE 207 (266)
Q Consensus 160 ------------------------------al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~ 207 (266)
.+..||++..+-+.+|..+...|++++|.+.+-..+..+-+ +..+++.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 22446777778888888888888888888777777766543 4555555
Q ss_pred HHHHH
Q 024531 208 LRLLA 212 (266)
Q Consensus 208 l~~l~ 212 (266)
|-.+-
T Consensus 278 lle~f 282 (304)
T COG3118 278 LLELF 282 (304)
T ss_pred HHHHH
Confidence 55443
No 197
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.81 E-value=0.00011 Score=68.38 Aligned_cols=125 Identities=29% Similarity=0.419 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh--CHHH
Q 024531 75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RYEE 152 (266)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~--~~~~ 152 (266)
..+.-+..+......|+.+|+.++|..|.-.|..++.+.|.+... ...+..|.+.|++.+| +|..
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-------------~a~~~~~~~s~~m~~~l~~~~~ 111 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-------------VATLRSNQASCYMQLGLGEYPK 111 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-------------hhhHHHHHHHHHhhcCccchhh
Confidence 445556778888999999999999999999999999999965332 3446788888888765 8999
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531 153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 212 (266)
Q Consensus 153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 212 (266)
++..|.-++...|...++++.++.+|..++..+-|++++.-....+|.+.++..-+.+++
T Consensus 112 ~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 112 AIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred hcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987765555443
No 198
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=7.4e-05 Score=59.66 Aligned_cols=73 Identities=16% Similarity=0.043 Sum_probs=67.8
Q ss_pred hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA 205 (266)
Q Consensus 133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 205 (266)
+..+++.+|..|-.+|-+.-|..++.++|.+.|.-+.++..+|.-+..-|+|+.|.+.|..++++||.+.=+.
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence 4557899999999999999999999999999999999999999999999999999999999999999875443
No 199
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.76 E-value=0.0011 Score=61.02 Aligned_cols=123 Identities=16% Similarity=0.034 Sum_probs=104.5
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
++.....++.++|++.+.+||...|.... ++..+|+++-.+++.+.|...|...++..|+.+-
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~fp~f~K-----------------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSFPDFHK-----------------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhCCchHH-----------------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 34444567788999999999999888544 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 229 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~ 229 (266)
.|..++..-...|+.-.|...+.++..-+|.|...+-..-+...+.+..++++..|-+.+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887666666666666666666665443
No 200
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.74 E-value=7.2e-05 Score=67.51 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=95.6
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
|.-+-..|+-..|+..+..|+...|..... .+.|+|...++.+..-+|-..+.++|.+....+-
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v----------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl 677 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDV----------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPL 677 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcc----------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch
Confidence 444556789999999999999998875432 4789999999999999999999999999988888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 213 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 213 (266)
.+|-+|.++..+.+.+.|++.|+.|+.++|+++.+...|..+.-
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999988887643
No 201
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00059 Score=58.41 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=24.8
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYM 113 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~ 113 (266)
......|-++|+.|+|++|+..|.-+..-+
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD 87 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccC
Confidence 334467899999999999999999988744
No 202
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0015 Score=53.85 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=98.0
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhh---------hh-chhHHHHHHHhhhh-hhhhHHHHHHHh----hCHHH
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF---------QL-FGKYRDMALAVKNP-CHLNMAACLLKL----KRYEE 152 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~-~~~~~~~~~~l~~~-~~~n~a~~~~~~----~~~~~ 152 (266)
--|..+.+.++|++|++.......+.-..... .. .+....+ ..+.-. .+..+|.++.+. +...+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~m-q~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKM-QQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHhccchhhhh
Confidence 34678889999999999877743332110000 00 1111111 111111 244477777663 35889
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531 153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 229 (266)
Q Consensus 153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~ 229 (266)
|.-+|+..-+..|..+..+...+.|++.+|+|++|...++.+|.-++++++.+.++..+...++...+...+.....
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999887788899999999999999999999999999999999999999999988777766544444433333
No 203
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0032 Score=49.63 Aligned_cols=103 Identities=20% Similarity=0.168 Sum_probs=80.3
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
...+.+..++..|++++|+..++.++....+. .+..-+-..+|.+...+|.++.|+..++..-.-+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De--------------~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~ 156 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDE--------------NLKALAALRLARVQLQQKKADAALKTLDTIKEES 156 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhH--------------HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 44567888999999999999999999765442 2233366789999999999999999887654321
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
-.+..--.+|.++...|+-++|...|.++++.++++.
T Consensus 157 -w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 157 -WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 1223355789999999999999999999999985543
No 204
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00032 Score=57.10 Aligned_cols=107 Identities=13% Similarity=0.029 Sum_probs=84.0
Q ss_pred hhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc--------CCCCc----------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024531 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLG--------EDENN----------VKALFRRGKARAELGQTDAAREDFLK 193 (266)
Q Consensus 132 l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~--------l~p~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~ 193 (266)
..++++...|.-+++.|+|.+|...|..|+. -.|.. ...+.+.++|+...|+|-++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 3456788899999999999999999998872 23433 34688999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531 194 AGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239 (266)
Q Consensus 194 al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 239 (266)
+|..+|.|..+..--++.....- ..++.+.++.+.+...+...+.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~W-n~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVW-NEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcChhhHHH
Confidence 99999999988766665543333 3455667789999877765544
No 205
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.57 E-value=0.005 Score=53.40 Aligned_cols=126 Identities=12% Similarity=-0.020 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531 78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 157 (266)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~ 157 (266)
.+...+......|..-+..|+|.+|.+...++-+..+... .+|.--|.+-..+|+++.|-.+.
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~-----------------l~~l~aA~AA~qrgd~~~an~yL 141 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV-----------------LAYLLAAEAAQQRGDEDRANRYL 141 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH-----------------HHHHHHHHHHHhcccHHHHHHHH
Confidence 4566677778889999999999999999998666554422 25667788888999999999999
Q ss_pred HhHhcCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531 158 SLVLGEDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 220 (266)
Q Consensus 158 ~~al~l~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 220 (266)
.++-++.++ ..-....++..+...|+++.|.....++++..|.++.+......++...+...+
T Consensus 142 ~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 142 AEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 999998544 456677899999999999999999999999999999999888888766665443
No 206
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.56 E-value=0.00015 Score=39.90 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 169 KALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
.++|++|.++..+|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367888888888888888888888888888864
No 207
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0014 Score=60.05 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=92.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.-..+++.|..+|+..+|..|++.|...+...|.+.. .....+...+++.||+++.+.+.|.+++..|-
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~-----------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY-----------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh-----------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999987643 22246678999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
+.||.++-..+....+...-+.-++|+.+........
T Consensus 422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999999888888889999999999999998877654
No 208
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.56 E-value=0.00087 Score=49.49 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=65.9
Q ss_pred hhhhhhhHHHHHHHhh---CHHHHHHHHHhHhc-CCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024531 133 KNPCHLNMAACLLKLK---RYEEAIGQCSLVLG-EDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE 207 (266)
Q Consensus 133 ~~~~~~n~a~~~~~~~---~~~~A~~~~~~al~-l~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 207 (266)
.....+|+|.++.+.. +..+.+..+...++ -.|. .-...|.++..++++++|+.++.+.+..++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3346789999998866 46778889999986 4443 35788999999999999999999999999999999999865
Q ss_pred HHHHHH
Q 024531 208 LRLLAE 213 (266)
Q Consensus 208 l~~l~~ 213 (266)
-..++.
T Consensus 111 k~~ied 116 (149)
T KOG3364|consen 111 KETIED 116 (149)
T ss_pred HHHHHH
Confidence 554443
No 209
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.52 E-value=9.2e-05 Score=41.43 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=30.0
Q ss_pred HHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531 105 QYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 154 (266)
Q Consensus 105 ~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~ 154 (266)
.|++||+++|++.. +++|+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~-----------------a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAE-----------------AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHH-----------------HHHHHHHHHHHCcCHHhhc
Confidence 38899999999776 6999999999999999986
No 210
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.50 E-value=0.0036 Score=59.34 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=94.8
Q ss_pred HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL 171 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 171 (266)
.....++|..|+....+.++..|+... +...-|..+.++|+.++|...++..-...+++...+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~-----------------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALY-----------------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL 80 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH
Confidence 345678999999999999999999544 456678999999999999977766666777788888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHhccc
Q 024531 172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK---QKEIYKGIF 230 (266)
Q Consensus 172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~---~~~~~~k~~ 230 (266)
-.+-.||..++.+++|..+|++++.-+|+ .+....+=.++-+.+.+.+. .-++| |.|
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~Ly-K~~ 140 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLY-KNF 140 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC
Confidence 89999999999999999999999999999 66665665555555544333 33555 444
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.48 E-value=0.0076 Score=49.60 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=107.2
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh--------CHHHHHHH
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--------RYEEAIGQ 156 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~--------~~~~A~~~ 156 (266)
.+...+-.+++.++|+.|+....+-+.+.|..+.... +++-.|.+++..= --..|+..
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY--------------~~YlkgLs~~~~i~~~~rDq~~~~~A~~~ 138 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY--------------AYYLKGLSYFFQIDDVTRDQSAARAAFAA 138 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH--------------HHHHHHHHHhccCCccccCHHHHHHHHHH
Confidence 4457788999999999999999999999998654211 6777777776633 25678899
Q ss_pred HHhHhcCCCCchH---------------HH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-H
Q 024531 157 CSLVLGEDENNVK---------------AL--FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA-V 218 (266)
Q Consensus 157 ~~~al~l~p~~~~---------------a~--~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~-~ 218 (266)
++..+.-.|++.- +. ...|.-|.+.|.|..|+.-++.+++.-|+...+...|..+.+.... .
T Consensus 139 f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 139 FKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG 218 (254)
T ss_pred HHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence 9999999998521 12 2358889999999999999999999998887777777766554221 2
Q ss_pred HHHHHHHHhcccCCCCCCcccchhHHHhHHHHH
Q 024531 219 YKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLV 251 (266)
Q Consensus 219 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 251 (266)
...+.+...++++. +.+...|....|..+.
T Consensus 219 l~~~a~~~~~vl~~---N~p~s~~~~~~~~~~~ 248 (254)
T COG4105 219 LTDEAKKTAKVLGA---NYPDSQWYKDAYRLLQ 248 (254)
T ss_pred ChHHHHHHHHHHHh---cCCCCcchhhhhhccc
Confidence 22333345566643 3334447777766543
No 212
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0019 Score=58.60 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=87.0
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
.+.+-++|+.+..++|+..++ . +++.+.. +....|+.++++++|++|++.|+..++-+.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~--~~~~~~~-----------------ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-G--LDRLDDK-----------------LLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-c--ccccchH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 588899999999999999998 2 2222211 4667899999999999999999887644332
Q ss_pred -------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHH---
Q 024531 167 -------------------------------NVKALFRRGKARAELGQTDAAREDFLKAGKF--------APEDKSI--- 204 (266)
Q Consensus 167 -------------------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~--- 204 (266)
+..-+|+.|.++...|+|.+|++.+++++.+ +.+..++
T Consensus 143 d~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~e 222 (652)
T KOG2376|consen 143 DQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEE 222 (652)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence 3457999999999999999999999999443 2222333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531 205 ----ARELRLLAEHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 205 ----~~~l~~l~~~~~~~~~~~~~~~~k~~ 230 (266)
+-.|..+.+.+++..++ ...|..+.
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea-~~iy~~~i 251 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEA-SSIYVDII 251 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHH-HHHHHHHH
Confidence 34444555555554443 44455554
No 213
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.48 E-value=0.00064 Score=58.33 Aligned_cols=139 Identities=22% Similarity=0.283 Sum_probs=101.4
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh-----------hhchhHHHHH---------------HHhhhh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLFGKYRDMA---------------LAVKNP 135 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~~~~~~~~~~---------------~~l~~~ 135 (266)
+...+.+.|..++...++.+|+..+.+.+....+...- ...+...+++ ..+...
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999988765432110 1122222221 234566
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-----KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI------ 204 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~-----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~------ 204 (266)
++.|++..+-++.++.+++.+++.-+.+....+ .++..+|.++..++.++++++.|++|+.+..++.+.
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 899999999999999999999999988754433 577889999999999999999999999987765443
Q ss_pred HHHHHHHHHHHHHHHH
Q 024531 205 ARELRLLAEHEKAVYK 220 (266)
Q Consensus 205 ~~~l~~l~~~~~~~~~ 220 (266)
-..|..+...++..++
T Consensus 165 cv~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEK 180 (518)
T ss_pred hhhHHHHHHHHHhhhH
Confidence 3344545545554443
No 214
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.47 E-value=0.00065 Score=52.82 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=63.7
Q ss_pred CHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-
Q 024531 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT----------DAAREDFLKAGKFAPEDKSIARELRLLAEHEKA- 217 (266)
Q Consensus 149 ~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~- 217 (266)
-|+.|.+.+......+|.+..++++.|.++..+.++ ++|+.-|+.|+.++|+..++...++.....+..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 378899999999999999999999999999988555 778999999999999999888888877554433
Q ss_pred ---------HHHHHHHHHhcccCCCCCCc
Q 024531 218 ---------VYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 218 ---------~~~~~~~~~~k~~~~~~~~~ 237 (266)
.-++....|.+.....|.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 22333445566555555543
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.011 Score=47.96 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=78.2
Q ss_pred HHHHhHHHHhh-ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 86 RKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 86 ~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
+.+.|..|-.. .++..|+.+|.++-+....+.. ......++...|..-..+++|.+|+..|.++....
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-----------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-----------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445554443 5777788888887776654322 23344577788888888999999999999987654
Q ss_pred CCc------hH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531 165 ENN------VK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI 204 (266)
Q Consensus 165 p~~------~~-a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 204 (266)
-+| .+ .++..|.||+-..+.-.+...+++..+++|.-.+.
T Consensus 185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 443 23 35577999999899999999999999999974433
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=0.00083 Score=58.60 Aligned_cols=104 Identities=16% Similarity=0.093 Sum_probs=82.5
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
..+-+.||.+.-.|+|..|+++|..++.+.-.-.. .+.-....+.+|.+|.-+.++.+||.+.++-|.+
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~-----------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN-----------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc-----------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456799999999999999999999877533211 1222334678999999999999999999987765
Q ss_pred CC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 164 DE------NNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 164 ~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
.. ....+++.+|.+|..+|+.++|+.+.++.+++.
T Consensus 305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 32 245789999999999999999999988888763
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.45 E-value=0.0069 Score=47.57 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=94.4
Q ss_pred HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc-CCCCchHHHH
Q 024531 94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG-EDENNVKALF 172 (266)
Q Consensus 94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~-l~p~~~~a~~ 172 (266)
-+.=|.+.+.+...+.++..|.... .+.+|.+...+|++.+|..+|.+++. +..+++..+.
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTvqn------------------r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lL 128 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTVQN------------------RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLL 128 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhHHH------------------HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHH
Confidence 3334555555555666666555332 67789999999999999999999984 5667888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 173 RRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 173 ~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
.++++.+..+++..|...+++..+.+|. .++..-.+.+....++++.+++.. |+...+-.+.+.
T Consensus 129 glA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa-fe~a~~~ypg~~ 194 (251)
T COG4700 129 GLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA-FEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH-HHHHHHhCCCHH
Confidence 9999999999999999999999999986 566666778777777777666555 555555445444
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.44 E-value=0.0089 Score=46.89 Aligned_cols=113 Identities=30% Similarity=0.254 Sum_probs=65.4
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHH-HHHHhhCHHHHHHHHHhHhc
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA-CLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~-~~~~~~~~~~A~~~~~~al~ 162 (266)
..+...|......+++..|+..+..++...+.... .....+. ++...|+++.|+..+.+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDL-----------------AEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445566666666666677766666665554311 1222233 66666666666666666666
Q ss_pred CCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 024531 163 EDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIARELRLLAE 213 (266)
Q Consensus 163 l~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l~~l~~ 213 (266)
.+| .....++..+..+...++++.|+..+.+++...|. .......+..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 555 34455555555566666666666666666666666 4555544554433
No 219
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.43 E-value=0.00014 Score=40.49 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
++..+|.+|..+|++++|+.+++++++++|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68899999999999999999999999999854
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.39 E-value=0.0058 Score=47.99 Aligned_cols=108 Identities=29% Similarity=0.327 Sum_probs=87.2
Q ss_pred HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC-chHH
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-NVKA 170 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a 170 (266)
.++..|+++.|+..|.+++...|.... ....+...+..+...+++..|+..+.+++...|. ...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 204 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE--------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc--------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHH
Confidence 788999999999999999886552000 1113555666688899999999999999999999 7999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531 171 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 213 (266)
Q Consensus 171 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 213 (266)
+..++.++...+++..|...+..++...|........+.....
T Consensus 205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 9999999999999999999999999999985555555554444
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.38 E-value=0.00037 Score=39.46 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
++.++|.+|..+|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667888888888888888888885544
No 222
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.36 E-value=0.00055 Score=42.38 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK 176 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 176 (266)
+++.+|..+.++|+|..|..+++.+|+++|+|..+.--...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 57889999999999999999999999999999887654443
No 223
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.30 E-value=0.00047 Score=36.80 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 169 KALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
.+++++|.++..++++++|..+|+.++.++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45667777777777777777777777777664
No 224
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.25 E-value=0.00081 Score=59.63 Aligned_cols=88 Identities=20% Similarity=0.052 Sum_probs=71.5
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
+-+-|.-.++-+.|+.|+..|.+||+++|+.+..+-+++.++...++|..|+.++.+|++++|....+...-+....+..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 55677888899999999999999999999999999999999999999999999999999999986554433333334455
Q ss_pred HHHHHHHH
Q 024531 217 AVYKKQKE 224 (266)
Q Consensus 217 ~~~~~~~~ 224 (266)
+..++...
T Consensus 87 ~~~~A~~~ 94 (476)
T KOG0376|consen 87 EFKKALLD 94 (476)
T ss_pred HHHHHHHH
Confidence 55444443
No 225
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.23 E-value=0.0013 Score=55.30 Aligned_cols=75 Identities=19% Similarity=0.130 Sum_probs=68.1
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
+-.+.|.-..+.|+.++|...+..|+.++|.++.++...|.......+.-+|-.+|-+||.++|.|.+++.+-.+
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 345677777889999999999999999999999999999999999999999999999999999999988766554
No 226
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0032 Score=52.28 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=70.2
Q ss_pred HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531 130 LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206 (266)
Q Consensus 130 ~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 206 (266)
.++......|+=..++..++|+.|..+..+.+.++|+++.-+.-+|.+|.++|.+.-|+.+++..++.-|+++.+..
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 44556678888899999999999999999999999999999999999999999999999999999999999887654
No 227
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.0013 Score=55.09 Aligned_cols=94 Identities=23% Similarity=0.308 Sum_probs=77.5
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.+....+.|-..|+.|+|+.|++.|+.|++.....+. +-+|+|.|+++.++++.|+++....+
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-----------------lAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-----------------LAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-----------------hHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4667788899999999999999999999998776544 57899999999999999999887665
Q ss_pred ----cCCCCc-------------------------hHHHHHHHHHHHHcCCHHHHHHHHH
Q 024531 162 ----GEDENN-------------------------VKALFRRGKARAELGQTDAAREDFL 192 (266)
Q Consensus 162 ----~l~p~~-------------------------~~a~~~~g~~~~~~g~~~~A~~~~~ 192 (266)
+..|.. ..|+...+-++++.++++.|.+.+-
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 344421 4567778889999999999988764
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.011 Score=44.68 Aligned_cols=98 Identities=21% Similarity=0.145 Sum_probs=67.0
Q ss_pred hHHHHHHHhhCHHHHHHHHHhHhcCCCC----------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 139 NMAACLLKLKRYEEAIGQCSLVLGEDEN----------------------NVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 139 n~a~~~~~~~~~~~A~~~~~~al~l~p~----------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
..|......++...++..+.+++.+... ...+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 3455556677888899999998877432 134677788899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHhcccCCCCCC
Q 024531 197 FAPEDKSIARELRLLAEHEKAVYKKQK------EIYKGIFGPRPEP 236 (266)
Q Consensus 197 l~p~~~~~~~~l~~l~~~~~~~~~~~~------~~~~k~~~~~~~~ 236 (266)
++|-+..+...+..+....++...+.+ ..++.-++..|.+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999988777666555444 2333445555543
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.08 E-value=0.005 Score=56.12 Aligned_cols=105 Identities=25% Similarity=0.255 Sum_probs=81.0
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
+.+--+...|..+...|+.++|++.|++++...... ..+..-++..+|.|++-+.+|++|..++.+.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-------------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-------------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-------------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 334455677899999999999999999998533221 2334457899999999999999999999999
Q ss_pred hcCCCCchHH--HHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 024531 161 LGEDENNVKA--LFRRGKARAELGQT-------DAAREDFLKAGKFAP 199 (266)
Q Consensus 161 l~l~p~~~~a--~~~~g~~~~~~g~~-------~~A~~~~~~al~l~p 199 (266)
++.+. ..++ .|..|.|+..+++. ++|.+.|.++-.+-.
T Consensus 332 ~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 332 LKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred Hhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 98653 3444 45679999999999 888888887766543
No 230
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0035 Score=53.29 Aligned_cols=81 Identities=19% Similarity=0.081 Sum_probs=65.7
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 212 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 212 (266)
|-.-|.-|++-++|..|+..|.++|+....+ .-.|.++|-|...+|+|..|+.++.+++.++|.+..+..--+.|.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 5567889999999999999999999875443 446789999999999999999999999999999866554444443
Q ss_pred HHHHH
Q 024531 213 EHEKA 217 (266)
Q Consensus 213 ~~~~~ 217 (266)
-.++.
T Consensus 164 ~eLe~ 168 (390)
T KOG0551|consen 164 LELER 168 (390)
T ss_pred HHHHH
Confidence 33433
No 231
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.07 E-value=0.0086 Score=42.86 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=66.5
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-----------HHHHHHHH
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-----------YEEAIGQC 157 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-----------~~~A~~~~ 157 (266)
.+..+|.+|++-+|++..+..+...+++... ..++...|.++.++.. .-.+++.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~--------------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~ 67 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS--------------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECF 67 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch--------------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHH
Confidence 4678999999999999999999988775421 1135555666655442 44567777
Q ss_pred HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
.++..+.|+.+..+|.+|.=+-....|++++.-.+++|.+
T Consensus 68 s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 68 SRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777777777777777776666666677777777766654
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.015 Score=48.11 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=81.5
Q ss_pred hhhhhhhHHHHHHHhhCHHHHHHHHHhHh----cCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVL----GEDE--NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206 (266)
Q Consensus 133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al----~l~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 206 (266)
...+...++.+.++.|+.+.|..+++++- .++. .+.-.+-+.+.+|.-.++|..|...|.+++..||.++.+.+
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N 290 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN 290 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence 34467889999999999999999998543 3332 34556778889999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531 207 ELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 238 (266)
Q Consensus 207 ~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~ 238 (266)
.-+.|.--+++..++-+.+ ..|....|.+.-
T Consensus 291 nKALcllYlg~l~DAiK~~-e~~~~~~P~~~l 321 (366)
T KOG2796|consen 291 NKALCLLYLGKLKDALKQL-EAMVQQDPRHYL 321 (366)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhccCCccch
Confidence 8887776677777776664 456655554443
No 233
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.017 Score=52.69 Aligned_cols=118 Identities=23% Similarity=0.220 Sum_probs=86.6
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHHHHHhh-------hhh-hhhHHHHHHHh
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMALAVK-------NPC-HLNMAACLLKL 147 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~~~l~-------~~~-~~n~a~~~~~~ 147 (266)
..+...-+.+-+.++|++|+..-.+.+...|++...- ..+...+.+.-+. ... .+..|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 3445555677788999999999999999987754330 0112222221111 111 25789999999
Q ss_pred hCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531 148 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI 204 (266)
Q Consensus 148 ~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 204 (266)
++.++|+..++ .+++.+.+.+.-.|++++.+|+|++|...|+...+-+.++.+.
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 99999999998 6677778889999999999999999999999998877665443
No 234
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.97 E-value=0.0013 Score=53.12 Aligned_cols=61 Identities=23% Similarity=0.229 Sum_probs=56.3
Q ss_pred HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
....+.++.+.|.+.|++++++.|.+...||++|....+.|+++.|.+.|++.++++|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3445678899999999999999999999999999999999999999999999999999864
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.96 E-value=0.059 Score=45.69 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHhhc-cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHH
Q 024531 73 DMTVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE 151 (266)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~ 151 (266)
.+.+......+..+++.|...+..+ ++..|...+++|.++.+.... .+.......++...++..++.+|+..+.++
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~---~~~~~~~~~elr~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK---MDKLSPDGSELRLSILRLLANAYLEWDTYE 101 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh---ccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence 4566777788999999999999999 999999999999999644110 011122235667778999999999988754
Q ss_pred ---HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531 152 ---EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 199 (266)
Q Consensus 152 ---~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 199 (266)
+|....+.+-.-.|+.+..++..=.++...++.+++.+.+.+.+..-+
T Consensus 102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 344444455555677777775555556668999999999999888654
No 236
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.94 E-value=0.015 Score=55.79 Aligned_cols=146 Identities=13% Similarity=-0.044 Sum_probs=101.0
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhh--hccchhhhh-------chhHH---HHHHHh--------hhhhhhhHHH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAY--MGDDFMFQL-------FGKYR---DMALAV--------KNPCHLNMAA 142 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~--~~~~~~~~~-------~~~~~---~~~~~l--------~~~~~~n~a~ 142 (266)
...+......+.+.|+.++|++.|.+.+.. .|+...+.. .+... +....+ ....|..+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 456777888888999999999999987653 344332210 11111 111111 1225777889
Q ss_pred HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 222 (266)
Q Consensus 143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 222 (266)
+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.++|++......|..++...++.+++.
T Consensus 471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999999999988765 3444 45668888889999999999999999999999998877777777766666554443
Q ss_pred HHHHhcccC
Q 024531 223 KEIYKGIFG 231 (266)
Q Consensus 223 ~~~~~k~~~ 231 (266)
+ .++.|-+
T Consensus 549 ~-v~~~m~~ 556 (697)
T PLN03081 549 K-VVETLKR 556 (697)
T ss_pred H-HHHHHHH
Confidence 3 3455543
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.021 Score=48.84 Aligned_cols=148 Identities=14% Similarity=0.061 Sum_probs=95.0
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--------hhchhHHHHH---HHhh----------hhhhhhHHHH
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFGKYRDMA---LAVK----------NPCHLNMAAC 143 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------~~~~~~~~~~---~~l~----------~~~~~n~a~~ 143 (266)
.....+..++.+|++.+|...+.+.|+-.|.+... -..+....+. ..+. .-++--.|.+
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34456778899999999999999999988876432 0122211111 1111 1122346788
Q ss_pred HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHH--HHHHHHHHHHHHHHH
Q 024531 144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSI--ARELRLLAEHEKAVY 219 (266)
Q Consensus 144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~--~~~l~~l~~~~~~~~ 219 (266)
+...|-|++|.+..+++++++|.+.++....+.++...|++.++.+...+--..-... -.. .-+-+.+...-.+++
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 8888999999999999999999999999999999999999999998877543222111 000 112233333345566
Q ss_pred HHHHHHHhcccCC
Q 024531 220 KKQKEIYKGIFGP 232 (266)
Q Consensus 220 ~~~~~~~~k~~~~ 232 (266)
.+..-+-+.|+..
T Consensus 265 ~aleIyD~ei~k~ 277 (491)
T KOG2610|consen 265 KALEIYDREIWKR 277 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555566543
No 238
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.028 Score=50.18 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=50.8
Q ss_pred hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH----------------------------
Q 024531 95 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK---------------------------- 146 (266)
Q Consensus 95 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~---------------------------- 146 (266)
...+.+.+.+.|+.+|++.|...-. ..++....|.--++
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFt-------------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI 444 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFT-------------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI 444 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccch-------------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH
Confidence 3578899999999999999974221 22233333444444
Q ss_pred -----hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 147 -----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 147 -----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
+++++.+...|.+-|+..|.+..+|...|..-..+|+.+.|...|.-|++
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 44455555555555555555555555555555555555555555554444
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.93 E-value=0.0074 Score=52.03 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=63.8
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
...|+.+...+.|+++++.|+.|+++..+..+. -+...++..+|..|..+.++++|+-+..+|.++-..
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~-----------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDA-----------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-----------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 347888888899999999999999876553321 111224556666666666666666666666554221
Q ss_pred ----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 167 ----------NVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 167 ----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
..-++|+++.++..+|..-.|.++.+.+.++
T Consensus 195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 1234566666666666666666666666554
No 240
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.93 E-value=0.011 Score=56.62 Aligned_cols=62 Identities=8% Similarity=-0.063 Sum_probs=56.9
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
.+..+..++...|+++.|...++++++++|++...|..++.+|...|++++|.+.++...+.
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 46777788889999999999999999999999999999999999999999999999987754
No 241
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.93 E-value=0.09 Score=42.75 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=73.3
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-------HHHHHHHHHhHhc
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-------YEEAIGQCSLVLG 162 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-------~~~A~~~~~~al~ 162 (266)
+..+-....+++|+..|.-|+-...-.... ....+.++..+|.+|..+|+ +..|+..|.+++.
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~----------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~ 153 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEK----------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE 153 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 345556678999999999998754211000 11244468889999999888 4556666666665
Q ss_pred CCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 163 EDEN------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 163 l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
.... .....|.+|..+..+|++++|..+|.+++..-..+.
T Consensus 154 ~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 154 NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 4322 357899999999999999999999999998654433
No 242
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.92 E-value=0.022 Score=49.54 Aligned_cols=119 Identities=16% Similarity=0.019 Sum_probs=83.7
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
.+.....+..+...|++++|.+....++...-+... +. =.-..+-+++..=++..++.++
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L------------------~~--~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL------------------CR--LIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH------------------HH--HHhhcCCCCchHHHHHHHHHHH
Confidence 344445566777788899999988888876544211 11 1223356677778888888888
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ 222 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 222 (266)
..|+++..++.+|..++..+.|.+|..+|+.++...|+..+ ...++.+...+.+...++
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAE 381 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHH
Confidence 88888888888888888888888888888888888887433 345666666655544443
No 243
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.90 E-value=0.00086 Score=37.93 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
++.++|.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999996654
No 244
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.89 E-value=0.00097 Score=36.52 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
+++++|.|+.+.|++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 58899999999999999999999999999874
No 245
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.87 E-value=0.03 Score=55.33 Aligned_cols=102 Identities=13% Similarity=-0.035 Sum_probs=67.7
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC-
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE- 165 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p- 165 (266)
...|..+...|+++.|...+.+++........ ......++.++|.++...|+++.|...+.+++.+..
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDV-----------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666654332111 001122567888899999999999999988876521
Q ss_pred -------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531 166 -------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 199 (266)
Q Consensus 166 -------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 199 (266)
.....+..+|.++...|++++|...+.+++.+..
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 1223455778888899999999999998887643
No 246
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.85 E-value=0.023 Score=44.75 Aligned_cols=102 Identities=18% Similarity=0.046 Sum_probs=76.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
-..+..+|+.+.+.|+++.|++.|.++.+.+..... .+..+.++-.+.+..++|..+..+..++-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~--------------~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH--------------KIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH--------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456678999999999999999999998887655322 444677888888889999999999888865
Q ss_pred CCC--Cch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 163 EDE--NNV----KALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 163 l~p--~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
+-. .+. +.....|..++..++|.+|...|-.+..-.
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 422 222 223345888888999999999987776544
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.022 Score=51.94 Aligned_cols=98 Identities=17% Similarity=0.050 Sum_probs=78.5
Q ss_pred hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC----chHHH
Q 024531 96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN----NVKAL 171 (266)
Q Consensus 96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~ 171 (266)
..+...|.+.........|+... .+...|..+...|+.++|+..+++++...+. ..-++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~l-----------------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSAL-----------------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 44677788888888888888655 3788999999999999999999999854333 23478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
|.+|.++..+.+|++|..+|.+..+.+.-.+.....+.-
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999999999999999999977665555444443
No 248
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.78 E-value=0.0025 Score=33.77 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
++.++|.++..+++++.|+..+.++++++|.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 58899999999999999999999999998853
No 249
>PLN03077 Protein ECB2; Provisional
Probab=96.76 E-value=0.034 Score=54.70 Aligned_cols=136 Identities=9% Similarity=-0.082 Sum_probs=91.8
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHh--hhccchhhhh-------chhHHH---HHHHh--------hhhhhhhHHH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIA--YMGDDFMFQL-------FGKYRD---MALAV--------KNPCHLNMAA 142 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~--~~~~~~~~~~-------~~~~~~---~~~~l--------~~~~~~n~a~ 142 (266)
...+......+.+.|+.++|+..|++..+ ..|+...+.. .+...+ ....+ ....|..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 44577888889999999999999998876 3455433311 111111 11111 1235677788
Q ss_pred HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK 220 (266)
Q Consensus 143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 220 (266)
++.+.|++++|...+++. .+.|+ ...|..+-.++...++.+.|....+++++++|++......|..++...++-.+
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 888888888888888775 35554 45555555567778888888888888888888888888777777665554443
No 250
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.75 E-value=0.011 Score=40.97 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=51.7
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHH
Q 024531 153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKA 217 (266)
Q Consensus 153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~~~ 217 (266)
.+..+.+.+..+|++..+.|.+|.++...|++++|++.+-.++..+|+. ..+++.|-.+-..++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567888999999999999999999999999999999999999999864 6777766666555544
No 251
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.75 E-value=0.053 Score=54.29 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=62.3
Q ss_pred hhhhhHHHHHHHhhCHHHHHHHHHhHhc--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Q 024531 135 PCHLNMAACLLKLKRYEEAIGQCSLVLG--EDENNVKALFRRGKARAELGQTDAAREDFLKAGK--FAPEDKSIARELRL 210 (266)
Q Consensus 135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l~~ 210 (266)
..|..+..+|.+.|++++|+..|+.... ..| +...|..+..+|.+.|++++|.+.|++... +.|+.......+.
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~- 762 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV- 762 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Confidence 3567777888888888888888877653 344 456677788888888888888888887654 3455444433333
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 211 LAEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 211 l~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
.....+.. +...+.+..|....-.++
T Consensus 763 a~~k~G~l-e~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 763 ASERKDDA-DVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHCCCH-HHHHHHHHHHHHcCCCCC
Confidence 32333333 344555667665443333
No 252
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.72 E-value=0.046 Score=54.73 Aligned_cols=60 Identities=8% Similarity=-0.027 Sum_probs=31.0
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGED-ENNVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
|..+-.+|.+.|++++|...++...+.+ +.+...|..+..+|.+.|++++|...|.+...
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555443 22344444555555555555555555555444
No 253
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.019 Score=48.38 Aligned_cols=123 Identities=19% Similarity=0.143 Sum_probs=80.1
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH---
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV--- 160 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a--- 160 (266)
..+.-.|-+++...+|..|...|.+.-.+.|....+ ...-|+.+.+.+.+.+|+......
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY-----------------rlY~AQSLY~A~i~ADALrV~~~~~D~ 107 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY-----------------RLYQAQSLYKACIYADALRVAFLLLDN 107 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH-----------------HHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 345567899999999999999999988888875433 222333344444444443333221
Q ss_pred ---------------------------hcCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 161 ---------------------------LGEDE--NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 161 ---------------------------l~l~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
++.-| +......+.|.+.++-|+|++|++-|+.|++...-++-+...++.+
T Consensus 108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa 187 (459)
T KOG4340|consen 108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA 187 (459)
T ss_pred HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH
Confidence 12222 3456677788888888888888888888888877777777777766
Q ss_pred HHHHHHHHHHHH
Q 024531 212 AEHEKAVYKKQK 223 (266)
Q Consensus 212 ~~~~~~~~~~~~ 223 (266)
+-..+++..+.+
T Consensus 188 Hy~~~qyasALk 199 (459)
T KOG4340|consen 188 HYSSRQYASALK 199 (459)
T ss_pred HHhhhhHHHHHH
Confidence 555555544444
No 254
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=96.66 E-value=0.0014 Score=50.56 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=35.0
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCC
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 40 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g 40 (266)
++|.+ ++++||+.+|..|+.|++..|.|+|..+||...
T Consensus 38 ~~G~g-~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 38 RLGDG-SLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred EeCCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 57877 899999999999999999999999999999754
No 255
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.64 E-value=0.00071 Score=57.54 Aligned_cols=88 Identities=11% Similarity=-0.045 Sum_probs=67.3
Q ss_pred HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 024531 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK 221 (266)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 221 (266)
.-.+..|+++.|+.+|..++.++|.....|-.++.++..++....|+.+|..+++++|+...-...-...+..++.-.++
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 33445678999999999999999999999999999999999999999999999999998765444444443334443333
Q ss_pred HHHHHhccc
Q 024531 222 QKEIYKGIF 230 (266)
Q Consensus 222 ~~~~~~k~~ 230 (266)
..++....
T Consensus 202 -a~dl~~a~ 209 (377)
T KOG1308|consen 202 -AHDLALAC 209 (377)
T ss_pred -HHHHHHHH
Confidence 33344443
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.61 E-value=0.22 Score=38.28 Aligned_cols=114 Identities=8% Similarity=-0.104 Sum_probs=89.2
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
..+..+.+........++.+++...+...--+.|.... +-..-|..++..|+|.+|+..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e-----------------~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE-----------------LDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH-----------------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566777788888889999999999988888898655 4677899999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHHHHHH
Q 024531 161 LGEDENNVKALFRRGKARAELGQTDAAREDF-LKAGKFAPEDKSIARELRLLAEH 214 (266)
Q Consensus 161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~-~~al~l~p~~~~~~~~l~~l~~~ 214 (266)
..-.|..+-+--.++.|++.+++.+ -..+ +.+++. +.++.+...++.+..+
T Consensus 71 ~~~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~-~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 71 EERAPGFPYAKALLALCLYALGDPS--WRRYADEVLES-GADPDARALVRALLAR 122 (160)
T ss_pred hccCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhc-CCChHHHHHHHHHHHh
Confidence 9999998888888999999999873 2222 234443 4467777777766443
No 257
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.57 E-value=0.05 Score=54.36 Aligned_cols=64 Identities=23% Similarity=0.181 Sum_probs=30.9
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
|..++-+|.+-+.+++|.+.++..++--.+..+.|...|..++.+++-++|...+.+||.--|.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 4444444444445555555544444444344444444444444444444444445555444444
No 258
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.55 E-value=0.018 Score=52.55 Aligned_cols=101 Identities=13% Similarity=0.021 Sum_probs=86.0
Q ss_pred HHHHhHHHH-hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 86 RKMDGNALF-KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 86 ~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
+...+..|+ .+|+..+|+..|..++-+.|..... .++..+|.++.+.|...+|--.+..|+.-.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd---------------i~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD---------------IALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc---------------chhhhHHHHHHHcccccchhheeehhccCC
Confidence 344455554 4799999999999999988763321 157889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
|.....+|.+|.++.++++|.....+|..+.+.+|.-
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 9888889999999999999999999999999999974
No 259
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.55 E-value=0.02 Score=38.20 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=56.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.+....+.|..+|..++.++|+..+.++++..++... .-.++-.+..+|...|+|.+++.+...=+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~--------------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED--------------RFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999998877443 33467778899999999999998876655
Q ss_pred cC
Q 024531 162 GE 163 (266)
Q Consensus 162 ~l 163 (266)
.+
T Consensus 71 ~~ 72 (80)
T PF10579_consen 71 EI 72 (80)
T ss_pred HH
Confidence 43
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.53 E-value=0.04 Score=46.42 Aligned_cols=107 Identities=18% Similarity=0.100 Sum_probs=81.6
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
|......+++.++...+...... +++....-........++....++..++..+...++++.++...++.+..+|-+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~g~~~-~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~ 188 (280)
T COG3629 110 GLKARAGLRFEQAGELLSEGPVL-GDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP 188 (280)
T ss_pred ccchhhhHHHHHHHHHhhcCCcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH
Confidence 33334444555555555541111 12222223445556667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
+|.++-.+|+..|+...|+..|++.-.+
T Consensus 189 ~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 189 AYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 9999999999999999999999988774
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.014 Score=49.98 Aligned_cols=94 Identities=13% Similarity=-0.028 Sum_probs=71.3
Q ss_pred HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc----hH
Q 024531 94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN----VK 169 (266)
Q Consensus 94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~ 169 (266)
...|-|++|.+.-.+++++++.+.. +....|.++...+++.++.++..+--...... ..
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~W-----------------a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCW-----------------ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchH-----------------HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 3457788888888888888888766 46678899999999999999887764433221 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHH
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGK--FAPEDKSI 204 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~ 204 (266)
.|..-|.+|..-++|+.|++.|.+-+- ++.+|..+
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDAVA 285 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHHHHHhhccchhh
Confidence 466789999999999999999987654 45555533
No 262
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.42 E-value=0.065 Score=45.48 Aligned_cols=109 Identities=15% Similarity=0.018 Sum_probs=79.3
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH-hhCHHHHHHHHHhHhcCCCC
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~-~~~~~~A~~~~~~al~l~p~ 166 (266)
...+..-+.+..+.|-..|.+|+...+-... +|...|..-.. .++...|...|+.+++..|.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~-----------------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~ 68 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYH-----------------VYVAYALMEYYCNKDPKRARKIFERGLKKFPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH-----------------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHH-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 3344445556688999999999854333222 57777888666 45666699999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHH
Q 024531 167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIARELRLLAE 213 (266)
Q Consensus 167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~ 213 (266)
+...+..-..-+..+++.+.|...|++++..-|.+. .++........
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 999999989999999999999999999999877755 34444444433
No 263
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.15 Score=42.45 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=79.9
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhh----------hhchhHHHH---HHHh------hhhhhhhHHHHHHHhhC
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMF----------QLFGKYRDM---ALAV------KNPCHLNMAACLLKLKR 149 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~---~~~l------~~~~~~n~a~~~~~~~~ 149 (266)
.-.++.+..+++.|.....+..+++.+.... ...++.++- .+++ ...+++..|.|++.+++
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 3455666677777777777776665442111 001111110 0111 12357789999999999
Q ss_pred HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHH
Q 024531 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED-FLKAGKFAPEDKSI 204 (266)
Q Consensus 150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~-~~~al~l~p~~~~~ 204 (266)
|++|......+|.-+++++..+-++-.+-..+|.-.++... +.+....+|+++-+
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999999999999999999988776655 55566667876644
No 264
>PLN03077 Protein ECB2; Provisional
Probab=96.39 E-value=0.053 Score=53.36 Aligned_cols=108 Identities=10% Similarity=0.039 Sum_probs=58.0
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhh-------hchhHHH---HHHHh-------hhhhhhhHHHHHHHhhCH
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-------LFGKYRD---MALAV-------KNPCHLNMAACLLKLKRY 150 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------~~~~~~~---~~~~l-------~~~~~~n~a~~~~~~~~~ 150 (266)
..-+.|.+.|++++|...|... .++...++ ..+...+ ...++ ....+..+-.++.+.|.+
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 4556788899999999999886 33321110 0011000 00110 011233344455566666
Q ss_pred HHHHHHHHhHhcC---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 151 EEAIGQCSLVLGE---DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 151 ~~A~~~~~~al~l---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
++|..+++...+. .| +...|..+..++.+.|++++|.+.+++. .+.|+
T Consensus 606 ~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 6666666665522 22 3455666677777777777777766653 34555
No 265
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.34 E-value=0.047 Score=53.93 Aligned_cols=102 Identities=14% Similarity=0.040 Sum_probs=80.3
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
.....|..++..|+++.|...+.+++...+.... .....+..++|.++...|+++.|...+.+++...
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~ 521 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWY------------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMA 521 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3345678889999999999999999986554211 0122256789999999999999999999998653
Q ss_pred CC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 165 EN------NVKALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 165 p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
.. ...++..+|.++...|++++|...+++++.+.
T Consensus 522 ~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 522 RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 32 13567789999999999999999999999863
No 266
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.14 Score=46.17 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH
Q 024531 101 EAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180 (266)
Q Consensus 101 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 180 (266)
.-...|+.|....+.+.. ++.+...-..+.+.+.+--..|.++|...|+++..|...|.=.+.
T Consensus 89 rIv~lyr~at~rf~~D~~-----------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe 151 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVK-----------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE 151 (568)
T ss_pred HHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh
Confidence 344567777777766543 355544444455568999999999999999999999888877777
Q ss_pred cCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531 181 LGQ-TDAAREDFLKAGKFAPEDKSIARELRLLAEH 214 (266)
Q Consensus 181 ~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 214 (266)
.+. .+.|...|.++|+.+|+++..+...-+..-.
T Consensus 152 ~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 152 INLNIESARALFLRGLRFNPDSPKLWKEYFRMELM 186 (568)
T ss_pred hccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 766 9999999999999999999988877766433
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.28 E-value=0.074 Score=47.31 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhHHHHhhcc-HHHHHHHHHHHHhhhccchhhhh------chhHHHH---------------HHHhh----
Q 024531 80 IGAADRRKMDGNALFKEEK-LEEAMQQYEMAIAYMGDDFMFQL------FGKYRDM---------------ALAVK---- 133 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~------~~~~~~~---------------~~~l~---- 133 (266)
...+..+..-|..+.+.|. -+.|++....++...|.+...+. ...+.+. ..+.-
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 3445555666778888887 78899999999988887653311 0001110 00000
Q ss_pred ------hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHH
Q 024531 134 ------NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE----DKS 203 (266)
Q Consensus 134 ------~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~----~~~ 203 (266)
..-...=|.-++..|+|.++..++.-..+++| ++.++.-+|.|++...+|++|..++... -|+ |..
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dsk 531 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSK 531 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHH
Confidence 00112235566779999999999999999999 8999999999999999999999998754 343 456
Q ss_pred HHHHHHHHHHHHH
Q 024531 204 IARELRLLAEHEK 216 (266)
Q Consensus 204 ~~~~l~~l~~~~~ 216 (266)
+.+++..|.+.+.
T Consensus 532 vqKAl~lCqKh~~ 544 (549)
T PF07079_consen 532 VQKALALCQKHLP 544 (549)
T ss_pred HHHHHHHHHHhhh
Confidence 6677777755443
No 268
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.26 E-value=0.021 Score=48.26 Aligned_cols=79 Identities=23% Similarity=0.125 Sum_probs=66.8
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+......+....+.|+.++|...|..|+.+.|..+. ++..+|...-.-++.-+|-.+|-+||.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~-----------------~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ-----------------ILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH-----------------HHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 333445566778899999999999999999999766 588888888888889999999999999
Q ss_pred CCCCchHHHHHHHHHH
Q 024531 163 EDENNVKALFRRGKAR 178 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~ 178 (266)
++|.|.+|+.+++...
T Consensus 179 isP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 179 ISPGNSEALVNRARTT 194 (472)
T ss_pred eCCCchHHHhhhhccc
Confidence 9999999999887543
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.26 E-value=0.085 Score=47.53 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=19.5
Q ss_pred HHHhhccHHHHHHHHHHHHhhhccchh
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGDDFM 118 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~~~~ 118 (266)
...+..+.+.-++.-.+||+++|+...
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAd 203 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCAD 203 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhH
Confidence 345567778888888888888887644
No 270
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.19 E-value=0.2 Score=50.29 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=92.2
Q ss_pred hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531 135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 212 (266)
Q Consensus 135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 212 (266)
.++...|..+++.++-+.|-..+.+||.--|. +.+..-.-|+.-++.|+-+.+...|+-.+.-+|.-.+.+.-+..-.
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 36778889999999999999999999999887 7788888899999999999999999999999999888887666543
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCcccchhHHHhHHHH
Q 024531 213 EHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL 250 (266)
Q Consensus 213 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 250 (266)
.... ..+..+.+|+++....-.....+.+++.|+.|=
T Consensus 1645 ik~~-~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1645 IKHG-DIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HccC-CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 2222 235667788998887777777777777766653
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.05 E-value=0.11 Score=45.11 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=82.1
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHh-hhccchhh----hh------------chhHHHHHHHhhhhhhhhHHHHHH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIA-YMGDDFMF----QL------------FGKYRDMALAVKNPCHLNMAACLL 145 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~~~~~~~----~~------------~~~~~~~~~~l~~~~~~n~a~~~~ 145 (266)
.....+.+..+...|+..+|+......+. ........ .. ..............++.-+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 34455667777778888888888888777 22221000 00 001122334555677888888887
Q ss_pred Hh------hCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 024531 146 KL------KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT-----------------DAAREDFLKAGKFAPE 200 (266)
Q Consensus 146 ~~------~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~-----------------~~A~~~~~~al~l~p~ 200 (266)
.. +..+.++..|..++.++|.+.++++..|..+..+-+. ..|+..|-+++.+.|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 77 7899999999999999999999999999888765333 3478888888888877
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.13 Score=42.34 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=63.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh----cCC--
Q 024531 91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL----GED-- 164 (266)
Q Consensus 91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al----~l~-- 164 (266)
.....+-+.++|+..|++++.....+.. ......++...+..+.+++.|.+|-..+.+-. ..+
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr-----------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDR-----------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 3334445566677777777666544322 12234467788899999999998877765532 222
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
|.--+++...-.+|....+|..|..+|+..-++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 3334556566667777789999999999987764
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.03 E-value=0.11 Score=46.73 Aligned_cols=107 Identities=22% Similarity=0.149 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHHhhhccchhh----hhchhHHHHH----HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC--c
Q 024531 98 KLEEAMQQYEMAIAYMGDDFMF----QLFGKYRDMA----LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--N 167 (266)
Q Consensus 98 ~~~~A~~~y~~al~~~~~~~~~----~~~~~~~~~~----~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~--~ 167 (266)
-..+|.+.|+++++........ +..+...+.. .....-+-..+|.|..++|+.++|++.++..++..|. +
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 3788999999999876543221 1111111111 1122334567999999999999999999999988775 5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHH
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAGKF-APEDKSI 204 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~p~~~~~ 204 (266)
...++++-.++..++.|.++...+.+.=.+ -|....+
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 678999999999999999999999886443 2444433
No 274
>PRK10941 hypothetical protein; Provisional
Probab=96.03 E-value=0.067 Score=45.04 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=67.5
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
...+.+.=..+.+.+++..|+..-+..+.+.|+++. -+.-+|.+|.++|.+..|..+++.-++
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~-----------------e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY-----------------EIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344556677889999999999999999999999865 377899999999999999999999999
Q ss_pred CCCCchHHHHHHHHHH
Q 024531 163 EDENNVKALFRRGKAR 178 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~ 178 (266)
..|+++.+-.-+.++.
T Consensus 244 ~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 244 QCPEDPISEMIRAQIH 259 (269)
T ss_pred hCCCchhHHHHHHHHH
Confidence 9999988776554443
No 275
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.97 E-value=0.03 Score=50.14 Aligned_cols=120 Identities=12% Similarity=0.028 Sum_probs=86.9
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHH-hhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc-
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAI-AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG- 162 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~- 162 (266)
.+.-..+..|..|+|..|.+.+...- ...|.... +++ . ...-..+|+|.++++++.|.-+..+|.+||.
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~---T~q---~---~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N 312 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTI---TPQ---L---SSCIFNNNLGCIHYQLGCYQASSVLFLKALRN 312 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccc---cch---h---hhheeecCcceEeeehhhHHHHHHHHHHHHHH
Confidence 34455677788888888888765431 11111000 000 0 0111357999999999999999999999995
Q ss_pred --------CCC---------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531 163 --------EDE---------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 213 (266)
Q Consensus 163 --------l~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 213 (266)
+.| .....+|+.|..|...|+.-.|.+||.++...-..||..+--|+.|-.
T Consensus 313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 122 245789999999999999999999999999999999999988888743
No 276
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.18 Score=41.22 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=66.3
Q ss_pred HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-hCHHHHHHHHHhHhcCCCC------
Q 024531 94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLVLGEDEN------ 166 (266)
Q Consensus 94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-~~~~~A~~~~~~al~l~p~------ 166 (266)
|+..+..+|+..++++|++..+...+. +-..-+..+|..|-.- .++++|+.+|+++-+....
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~-----------~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFT-----------MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHH-----------HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 444566666666666666654432211 1122345667776554 7899999999988654322
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
--+++...+.--..+++|.+|+..|+++....-+|.
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 246777788888899999999999999988776664
No 277
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.54 Score=42.37 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=102.0
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
|.---.+++++.|-..|.+||..+... +++....+.+-++.+....|...+++|+.+=|.-.+
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~r~-----------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq 142 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDYRN-----------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ 142 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhccccc-----------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence 333345678899999999999987653 347888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchh
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNW 242 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 242 (266)
.||.....-..+|+...|...|++=++..|+.......+. ...+.++. +..+..|.+.+-..|+. ++|
T Consensus 143 lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~-fElRykei-eraR~IYerfV~~HP~v---~~w 210 (677)
T KOG1915|consen 143 LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK-FELRYKEI-ERARSIYERFVLVHPKV---SNW 210 (677)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHhhHH-HHHHHHHHHHheecccH---HHH
Confidence 9999999999999999999999999999999665544333 33334443 34556677776555443 466
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.66 E-value=0.16 Score=35.18 Aligned_cols=49 Identities=29% Similarity=0.351 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 102 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 102 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
.+..+.+.+..+|++.. +.+.+|..++..|++++|++.+-.++..++++
T Consensus 7 ~~~al~~~~a~~P~D~~-----------------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD-----------------ARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 45668888999999776 68999999999999999999999999999876
No 279
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.64 E-value=0.032 Score=32.00 Aligned_cols=29 Identities=24% Similarity=0.123 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 169 KALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
.++.++|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888887765
No 280
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.43 E-value=0.011 Score=52.75 Aligned_cols=94 Identities=11% Similarity=-0.087 Sum_probs=70.1
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHh-hhccchhhhhch-hHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIA-YMGDDFMFQLFG-KYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~~~~-~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
.++|-++|+.|.|.-++..|.+|++ .+..- .....+ .-.-..+.-...+++|.|..|+..|+.-.|..++.++....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL-~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQL-RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHH-hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 5678889999999999999999996 22110 000000 00011122234578999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHc
Q 024531 165 ENNVKALFRRGKARAEL 181 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~ 181 (266)
-.++..|.|++.|.+.-
T Consensus 366 h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcCcHHHHHHHHHHHHH
Confidence 99999999999998753
No 281
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.29 E-value=0.097 Score=44.02 Aligned_cols=67 Identities=16% Similarity=-0.008 Sum_probs=48.9
Q ss_pred HHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024531 128 MALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194 (266)
Q Consensus 128 ~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 194 (266)
-+..+...++...|..|...|.+.+|+..+++++.+||-+...+.-+-.++..+|+--.|.+.|++.
T Consensus 273 rle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 273 RLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445555566666777888888888888888888888888777777777788888776666666543
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.22 E-value=0.27 Score=37.83 Aligned_cols=81 Identities=14% Similarity=-0.056 Sum_probs=71.2
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
.+..+..+-...++.+++...+.-.--+.|..+..-..-|..+...|+|.+|+..|+.+..-.|..+-+...+..|...+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 45566677777889999999999888999999999999999999999999999999999999999998888888886444
Q ss_pred H
Q 024531 216 K 216 (266)
Q Consensus 216 ~ 216 (266)
+
T Consensus 92 ~ 92 (160)
T PF09613_consen 92 G 92 (160)
T ss_pred C
Confidence 3
No 283
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.017 Score=44.77 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=35.3
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCC
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 40 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g 40 (266)
++|.+ .+++|||.||.-|..|+...|.|.|..+||..-
T Consensus 36 i~G~g-~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 36 IVGAG-QLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred EecCC-CcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 58988 899999999999999999999999999999754
No 284
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.20 E-value=0.043 Score=31.34 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 169 KALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
.+|..+|.+-...++|++|+.+|++++++-
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998763
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.16 E-value=1.2 Score=38.54 Aligned_cols=120 Identities=18% Similarity=0.088 Sum_probs=89.5
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
..+..+...+....+.|.++.|...+.++....+..... ...+....|..+...|+..+|+..++..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-------------~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-------------LPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-------------CcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445667788889999999999999999988866332110 1124666788888888888888888777
Q ss_pred hcC--C-C-------------------------------CchHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCC
Q 024531 161 LGE--D-E-------------------------------NNVKALFRRGKARAEL------GQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 161 l~l--~-p-------------------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~al~l~p~ 200 (266)
+.- . + ...++++.+|.-...+ +.++++...|..+..++|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 661 0 0 1245777788877777 8999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 024531 201 DKSIARELRLLAE 213 (266)
Q Consensus 201 ~~~~~~~l~~l~~ 213 (266)
...+...++....
T Consensus 291 ~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 291 WEKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776543
No 286
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.15 E-value=0.32 Score=41.23 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE-LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 214 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 214 (266)
+|..+.....+.+..+.|...|.+|++..+.....|...|..-+. .++.+.|...|+.+++.-|.+...+.........
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666677777779999999999997777788889999999667 5666669999999999999998887766665555
Q ss_pred HHHHHHHHHHHHhcccCCCCCCc-ccchh
Q 024531 215 EKAVYKKQKEIYKGIFGPRPEPK-QKKNW 242 (266)
Q Consensus 215 ~~~~~~~~~~~~~k~~~~~~~~~-~~~~~ 242 (266)
.+. ....+.+|.+.+...+... ....|
T Consensus 83 ~~d-~~~aR~lfer~i~~l~~~~~~~~iw 110 (280)
T PF05843_consen 83 LND-INNARALFERAISSLPKEKQSKKIW 110 (280)
T ss_dssp TT--HHHHHHHHHHHCCTSSCHHHCHHHH
T ss_pred hCc-HHHHHHHHHHHHHhcCchhHHHHHH
Confidence 544 4566788999887755444 33444
No 287
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.13 E-value=0.085 Score=29.71 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 024531 169 KALFRRGKARAELGQTDAARED--FLKAGKFAPED 201 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~--~~~al~l~p~~ 201 (266)
+.++.+|-.+...|+|++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5677889999999999999999 44888888765
No 288
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.04 E-value=0.34 Score=40.62 Aligned_cols=62 Identities=13% Similarity=-0.056 Sum_probs=52.2
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531 153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 214 (266)
Q Consensus 153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 214 (266)
|..+|.+|+.+.|.+...|..+|.++...|+.-.|+=+|-+++....-.+.+..+|..+-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998765568888888877544
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.00 E-value=0.029 Score=32.17 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
++.|+|.+|...|++++|+..+.+++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 6889999999999999999999999865
No 290
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=94.87 E-value=0.025 Score=45.10 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=34.9
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCC
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 40 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g 40 (266)
++|.+ ++++|||.+|.-|..|+...|+|.|.-+||..-
T Consensus 35 ~~G~g-~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 35 LHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred EeCCC-cchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 57887 899999999999999999999999999998754
No 291
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.79 E-value=0.6 Score=46.07 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=79.5
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-------hCHHHHHHHHHhHh
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-------KRYEEAIGQCSLVL 161 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-------~~~~~A~~~~~~al 161 (266)
..+.+.....|+.|+..|.+.-...|.-.. -..+.+-.|.+.+.. ..+++|+.-|.+.-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKE--------------GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH 546 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCccc--------------chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc
Confidence 356778888999999999999998887432 122455555555442 25788888887653
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
-.|.-+--|.-.|.+|..+|+|++-+++|..|++.-|++|++-..-..
T Consensus 547 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (932)
T PRK13184 547 -GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH 594 (932)
T ss_pred -CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 345566678889999999999999999999999999998765544333
No 292
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=2 Score=35.56 Aligned_cols=131 Identities=11% Similarity=0.002 Sum_probs=80.5
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+..+..-++.+-...+|++|...+.+|++...++... --..++|-..+.....+..|.++...+++|..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl-----------fhAAKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL-----------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444555556688999999999988665432110 00233566677777788899999999999986
Q ss_pred C-----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HH---HHHHHHHHHHHHHHHHHHHH
Q 024531 163 E-----DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SI---ARELRLLAEHEKAVYKKQKE 224 (266)
Q Consensus 163 l-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~---~~~l~~l~~~~~~~~~~~~~ 224 (266)
+ .|+-.-.-...+-=....-+.++|+..|++++.+-.++. .+ .....++.-+.++..++...
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 6 333333333333334467789999999999998754432 22 22333344455555554443
No 293
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=1.3 Score=39.99 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+..+.-+|......|.|+.|..+|..|.+.... .++...+-.|+|..|++.++-+.-.+..+ .
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--------------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~ 429 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--------------IDLQAFCNLNLAISYLRIGDAEDLYKALD---L 429 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--------------HHHHHHHHHhHHHHHHHhccHHHHHHHHH---h
Confidence 444555677777788899999999999987654 34466678899999999887554333332 2
Q ss_pred CCCCc----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 163 EDENN----------VKALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 163 l~p~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
+.|.| ..++|-.|.-.+.++++.+|...+.+.+...
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 33432 3578888999999999999999999999987
No 294
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.62 E-value=0.19 Score=37.36 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=51.2
Q ss_pred HHHhHHHHhh---ccHHHHHHHHHHHHh-hhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 87 KMDGNALFKE---EKLEEAMQQYEMAIA-YMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 87 ~~~g~~~~~~---g~~~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
.+.+-.+... .+.++-+..+...+. -.|.. ...+.+.+|..+.++++|+.++.+++..|+
T Consensus 36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~----------------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER----------------RRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc----------------chhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444443 346667777777775 22322 223678899999999999999999999999
Q ss_pred CCCCchHHHHH
Q 024531 163 EDENNVKALFR 173 (266)
Q Consensus 163 l~p~~~~a~~~ 173 (266)
.+|+|..+.-.
T Consensus 100 ~e~~n~Qa~~L 110 (149)
T KOG3364|consen 100 TEPNNRQALEL 110 (149)
T ss_pred hCCCcHHHHHH
Confidence 99999877643
No 295
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.45 E-value=0.2 Score=34.88 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=46.5
Q ss_pred HHHHhhCHHHHHHHHHhHhcCCCC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 143 CLLKLKRYEEAIGQCSLVLGEDEN---------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 143 ~~~~~~~~~~A~~~~~~al~l~p~---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
...+.++|..|++.+.+.+..... ...+..++|.++...|++++|+..++.++.+...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345788999998888777644221 2467889999999999999999999999998654
No 296
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.28 E-value=0.17 Score=35.29 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=49.4
Q ss_pred HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 165 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p 165 (266)
...+.|+|..|++.+.+..+.......... ......+..++|..+...|++++|+..+++++.+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~--------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS--------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 346789999999999999987654322100 111233678899999999999999999999997743
No 297
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.27 E-value=0.62 Score=44.88 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=76.3
Q ss_pred HhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 146 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI 225 (266)
Q Consensus 146 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 225 (266)
..+++.+|+..+.+.++..|+..-|.--.|.++.++|.+++|..+++-.-.+-+++...+..+..|+..+++..+.-. .
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~-~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH-L 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH-H
Confidence 356799999999999999999999999999999999999999988887777888899999999999988888765554 4
Q ss_pred HhcccCCCCC
Q 024531 226 YKGIFGPRPE 235 (266)
Q Consensus 226 ~~k~~~~~~~ 235 (266)
|.++....|.
T Consensus 100 Ye~~~~~~P~ 109 (932)
T KOG2053|consen 100 YERANQKYPS 109 (932)
T ss_pred HHHHHhhCCc
Confidence 7777665554
No 298
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.18 E-value=0.083 Score=42.95 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=53.0
Q ss_pred HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
...+.++...|.+.|.+++.+.|.... -+..+|....+.|+++.|...|.+.+++||.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~-----------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAA-----------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhh-----------------hhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456789999999999999999998654 47788999999999999999999999999976
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.99 E-value=3.2 Score=35.11 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=73.2
Q ss_pred HHhhccHHHHHHHHHHHHhhhc-cchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcC----CC-
Q 024531 93 LFKEEKLEEAMQQYEMAIAYMG-DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGE----DE- 165 (266)
Q Consensus 93 ~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l----~p- 165 (266)
....|+++.|...|.++-...+ .++.. .......++|.|......+ +++.|+..+++++++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~----------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM----------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHH----------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 3568999999999999987663 22211 1224456899999999999 999999999988876 22
Q ss_pred --C-------chHHHHHHHHHHHHcCCHHHH---HHHHHHHHhhCCCCHHHH
Q 024531 166 --N-------NVKALFRRGKARAELGQTDAA---REDFLKAGKFAPEDKSIA 205 (266)
Q Consensus 166 --~-------~~~a~~~~g~~~~~~g~~~~A---~~~~~~al~l~p~~~~~~ 205 (266)
. ....+..++.+|...+.++.. ...++.+-.-.|+.+.+.
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 1 134677789999998887544 444445555567766666
No 300
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.93 E-value=1.5 Score=38.67 Aligned_cols=106 Identities=17% Similarity=-0.005 Sum_probs=72.1
Q ss_pred HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL 171 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~ 171 (266)
.....|+|+.|++..+......--.. +..+.....++...+..... -+...|..+...++++.|+...+-
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~---------~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaa 266 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEK---------DVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAA 266 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhch---------hhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHH
Confidence 34556777777776665544321100 00111222334444444332 358889999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024531 172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 208 (266)
Q Consensus 172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 208 (266)
..-+.+++..|+..++-..++.+.+.+|+ +++...+
T Consensus 267 v~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY 302 (531)
T COG3898 267 VVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLY 302 (531)
T ss_pred HHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence 99999999999999999999999999997 4443333
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.63 E-value=1.3 Score=41.38 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=72.7
Q ss_pred HHHhHHHHhhc-----cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh---CHHHHHHHHH
Q 024531 87 KMDGNALFKEE-----KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQCS 158 (266)
Q Consensus 87 ~~~g~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~---~~~~A~~~~~ 158 (266)
...|..+.+.. ++..|+..|.++-.....+ +.+++|.+|..-. +...|..+|.
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-------------------a~~~lg~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-------------------AQYLLGVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-------------------HHHHHHHHHHcCCccccHHHHHHHHH
Confidence 35677777643 7888999999998876554 5778888888766 5789999999
Q ss_pred hHhcCCCCchHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 024531 159 LVLGEDENNVKALFRRGKARAEL----GQTDAAREDFLKAGKFA 198 (266)
Q Consensus 159 ~al~l~p~~~~a~~~~g~~~~~~----g~~~~A~~~~~~al~l~ 198 (266)
.|... .++.|.+++|.||..- -+...|..+|.++-+.+
T Consensus 353 ~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 353 LAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 98765 6789999999998643 47799999999999887
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.44 E-value=0.13 Score=26.43 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 024531 169 KALFRRGKARAELGQTDAAREDFL 192 (266)
Q Consensus 169 ~a~~~~g~~~~~~g~~~~A~~~~~ 192 (266)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356667777777777777776654
No 303
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=1.9 Score=36.54 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=67.5
Q ss_pred hhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH------------------------
Q 024531 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK------------------------ 193 (266)
Q Consensus 138 ~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~------------------------ 193 (266)
...+.-....|++.+|...+..++..+|.+..+...++.||...|+.+.|...+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 34566777889999999999999999999999999999999999999777655543
Q ss_pred ----------HHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 194 ----------AGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY 226 (266)
Q Consensus 194 ----------al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~ 226 (266)
.+..+|+|.++...++......++.+++...++
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222357777777777766655566655555543
No 304
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=0.62 Score=43.41 Aligned_cols=85 Identities=19% Similarity=0.070 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 209 (266)
++-|-|.-+++..+|..++..|..-+..-|.+ .+....++.||..+.+.|.|.+.++.|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 56688999999999999999999998776654 678888999999999999999999999999999987766665
Q ss_pred HHHHHHHHHHH
Q 024531 210 LLAEHEKAVYK 220 (266)
Q Consensus 210 ~l~~~~~~~~~ 220 (266)
..-......++
T Consensus 436 ~~~~~E~~Se~ 446 (872)
T KOG4814|consen 436 QSFLAEDKSEE 446 (872)
T ss_pred HHHHHhcchHH
Confidence 54333333333
No 305
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=2.2 Score=39.42 Aligned_cols=106 Identities=16% Similarity=0.021 Sum_probs=78.7
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH-HHHhHhcCCCCc
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG-QCSLVLGEDENN 167 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~-~~~~al~l~p~~ 167 (266)
+.......++...|.-....++..+|.... ++.|++.+....|....++. .+..+....|++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~ 135 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCP-----------------AVQNLAAALELDGLQFLALADISEIAEWLSPDN 135 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccch-----------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcch
Confidence 344445556666777777777777777444 68899888888776555444 455588999998
Q ss_pred hHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 168 VKALFRR------GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 168 ~~a~~~~------g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
......+ +.....+++..++...+.++..+.|.++.+...+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 136 AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8776666 8888888888999999999999999998777666654
No 306
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.81 E-value=0.78 Score=40.45 Aligned_cols=97 Identities=18% Similarity=0.124 Sum_probs=74.8
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED 164 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~ 164 (266)
.+.+.|..|...|+++.|++.|.++-+.+..... .+..+.|.-.+-+-+|+|.....+-.+|...-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh--------------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH--------------VINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH--------------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 4567899999999999999999998887765322 23346677777777899988888888876541
Q ss_pred ----C----CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531 165 ----E----NNVKALFRRGKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 165 ----p----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 195 (266)
. -.++..+..|.++..++.|..|.++|-.+-
T Consensus 218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 124677788999999999999999987654
No 307
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.69 E-value=1.8 Score=38.19 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=70.4
Q ss_pred hHHHHHHHhhCHHHHHHHHHh---HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531 139 NMAACLLKLKRYEEAIGQCSL---VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE 215 (266)
Q Consensus 139 n~a~~~~~~~~~~~A~~~~~~---al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 215 (266)
.++..|....--+-+++-+++ .-.+.|+|....+..+.+-..-|+|..|...-+.+...+|.. .+.-.|..+.+..
T Consensus 297 ~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAe 375 (531)
T COG3898 297 DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAE 375 (531)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhc
Confidence 455555555444444444444 456789999999999999999999999999999999999984 4445688887666
Q ss_pred HHHHHHHHHHHhcccCCCCCCc
Q 024531 216 KAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 216 ~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
.....+.++...+.+..+.++.
T Consensus 376 tGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 376 TGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred cCchHHHHHHHHHHhcCCCCCc
Confidence 4555566666666666555543
No 308
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.66 E-value=0.56 Score=27.69 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 172 FRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 172 ~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
+.+|.+|..+|+++.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788888888888888888888884
No 309
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.65 E-value=0.28 Score=41.79 Aligned_cols=76 Identities=21% Similarity=0.159 Sum_probs=62.3
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFR-RGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
.+...+....+.|.|.+--..|.+++...|.|...|.. -+.-+...++++.+...|+++++++|+++.++.+.-+.
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 35555555667778999999999999999999887754 55667888999999999999999999999887665544
No 310
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.64 E-value=1.9 Score=31.01 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=55.8
Q ss_pred HHHHHHHhhCHHHHHHHHHhHhcCCCCchH---HHHHHHHHHHHcCCH-----------HHHHHHHHHHHhhCCCCHHHH
Q 024531 140 MAACLLKLKRYEEAIGQCSLVLGEDENNVK---ALFRRGKARAELGQT-----------DAAREDFLKAGKFAPEDKSIA 205 (266)
Q Consensus 140 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~~g~~~~~~g~~-----------~~A~~~~~~al~l~p~~~~~~ 205 (266)
+|..++..|++-+|++..+..+...+++.. .+...|.++..+..- -.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 577889999999999999999988877663 455567777655432 578999999999999886666
Q ss_pred HHHHHH
Q 024531 206 RELRLL 211 (266)
Q Consensus 206 ~~l~~l 211 (266)
..|+.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 555543
No 311
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.41 E-value=0.69 Score=33.72 Aligned_cols=75 Identities=19% Similarity=0.068 Sum_probs=55.4
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+-.+-.++..+...|+|++++..-.++|.+.+.-.. ..+.-..+.+.+-+++|.++-.+|+.++|+..|+.+-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE------L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE------LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc------cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344556777888999999999999999988754221 11122456777899999999999999999999998865
Q ss_pred C
Q 024531 163 E 163 (266)
Q Consensus 163 l 163 (266)
+
T Consensus 129 M 129 (144)
T PF12968_consen 129 M 129 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 312
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.35 E-value=1.1 Score=37.46 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=62.3
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN 167 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~ 167 (266)
..=..+...+++..|...-.+.+.++|.++. -..-+|.+|.++|.+.-|+.++...++..|+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~-----------------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPY-----------------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChh-----------------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 3445677789999999999999999999865 27789999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 024531 168 VKALFRRGKA 177 (266)
Q Consensus 168 ~~a~~~~g~~ 177 (266)
+.+-.-++..
T Consensus 249 ~~a~~ir~~l 258 (269)
T COG2912 249 PIAEMIRAQL 258 (269)
T ss_pred hHHHHHHHHH
Confidence 8877655543
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.34 E-value=1.5 Score=33.25 Aligned_cols=74 Identities=14% Similarity=-0.108 Sum_probs=49.4
Q ss_pred HHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531 140 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE 213 (266)
Q Consensus 140 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 213 (266)
....-...++.+++.......--+.|+.......-|..++..|+|.+|+..|+.+.+-.+..+-.+..+..|..
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 33344446677777776666666777777777777777777777777777777777666665655555555543
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.33 E-value=7.2 Score=37.00 Aligned_cols=118 Identities=8% Similarity=-0.055 Sum_probs=83.7
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccch---hhhh------chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF---MFQL------FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG 155 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~------~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~ 155 (266)
.+.--|......+..+.|.+.+.++++...... .... ......-...+...++...+.+.+-.++|..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 334457777888888899999999998765433 0000 0111222345566678889999999999999998
Q ss_pred HHHhHhcCC---C------CchHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhCCCCH
Q 024531 156 QCSLVLGED---E------NNVKALFRRGKARAELGQTDAAREDFL--------KAGKFAPEDK 202 (266)
Q Consensus 156 ~~~~al~l~---p------~~~~a~~~~g~~~~~~g~~~~A~~~~~--------~al~l~p~~~ 202 (266)
....+.... | ..+..+|-.|..+...|+.+.|...|. .+....+.+.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 888776542 2 247789999999999999999999998 4545555543
No 315
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.98 E-value=3 Score=36.77 Aligned_cols=104 Identities=17% Similarity=0.086 Sum_probs=72.1
Q ss_pred hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh---------cC---
Q 024531 96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL---------GE--- 163 (266)
Q Consensus 96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al---------~l--- 163 (266)
...|.++...|..++.....+...... ......+..+..++.++...|+...|-+.+++|| ..
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll-----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~ 81 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLL-----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF 81 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHH-----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345677777777776643111100000 0012245578899999999999999999888886 11
Q ss_pred --CCC------------c---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHH
Q 024531 164 --DEN------------N---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSI 204 (266)
Q Consensus 164 --~p~------------~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~ 204 (266)
++. | ..++++....+.+.|.+..|.+..+-.+.+||. |+-.
T Consensus 82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 221 1 357888999999999999999999999999998 6533
No 316
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=91.96 E-value=0.75 Score=37.70 Aligned_cols=117 Identities=12% Similarity=-0.031 Sum_probs=63.7
Q ss_pred HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH-HHH-HHHHHhHhc-C-CCCc--
Q 024531 94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY-EEA-IGQCSLVLG-E-DENN-- 167 (266)
Q Consensus 94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~-~~A-~~~~~~al~-l-~p~~-- 167 (266)
|..|+|+.|++....||+..-..++. .......+...-..+-|......|.. +-. ...+..+.. . =|+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~-----f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQ-----FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCcc-----ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHH
Confidence 56799999999999999875332210 00000111111223333334444431 111 111111111 1 1233
Q ss_pred hHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 168 VKALFRRGKARA---------ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 168 ~~a~~~~g~~~~---------~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
.+-|-..|..+. ..++...|+..+++|+.++|+ ..+...+.++..+++
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr 225 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence 344555677663 556888999999999999986 566666776655554
No 317
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.86 E-value=8.6 Score=34.01 Aligned_cols=97 Identities=15% Similarity=-0.017 Sum_probs=56.7
Q ss_pred HHhHHHHh---hccHHHHHHHHHHHHhhhcc-chhhhhchhHHHHHHHhhhhhhhhHHHHHHH---------hhCHHHHH
Q 024531 88 MDGNALFK---EEKLEEAMQQYEMAIAYMGD-DFMFQLFGKYRDMALAVKNPCHLNMAACLLK---------LKRYEEAI 154 (266)
Q Consensus 88 ~~g~~~~~---~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~---------~~~~~~A~ 154 (266)
..|-.+-+ .|+.++|+..+..++..... +++ .+.-.|.+|-. ....++|+
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d-----------------~~gL~GRIyKD~~~~s~~~d~~~ldkAi 246 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPD-----------------TLGLLGRIYKDLFLESNFTDRESLDKAI 246 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH-----------------HHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence 44555555 78999999999886654432 222 12222322221 22366677
Q ss_pred HHHHhHhcCCCCc---------------------------------------------hHHHHHHHHHHHHcCCHHHHHH
Q 024531 155 GQCSLVLGEDENN---------------------------------------------VKALFRRGKARAELGQTDAARE 189 (266)
Q Consensus 155 ~~~~~al~l~p~~---------------------------------------------~~a~~~~g~~~~~~g~~~~A~~ 189 (266)
..|.++.+++|+. .+.+-.++.+..-.|++++|..
T Consensus 247 ~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~ 326 (374)
T PF13281_consen 247 EWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQ 326 (374)
T ss_pred HHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777666532 2334445556666677777777
Q ss_pred HHHHHHhhCCCC
Q 024531 190 DFLKAGKFAPED 201 (266)
Q Consensus 190 ~~~~al~l~p~~ 201 (266)
.+++++.+.|..
T Consensus 327 a~e~~~~l~~~~ 338 (374)
T PF13281_consen 327 AAEKAFKLKPPA 338 (374)
T ss_pred HHHHHhhcCCcc
Confidence 777777766553
No 318
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.85 E-value=0.35 Score=43.04 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcC---------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGE---------DENNVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l---------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
++..+..++.-+|+|..|++..+.. ++ -+.+...+|..|.||+.+++|.+|++.|..++.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888899999999987543 22 234567899999999999999999999998875
No 319
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.66 E-value=1.5 Score=32.03 Aligned_cols=117 Identities=19% Similarity=0.099 Sum_probs=76.5
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh----H
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL----V 160 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~----a 160 (266)
.+-..|+..++.+++-.|+-+|++|+....+... ..+..-+..-.+.+...-|+|.-+...|+.+=.+++++- +
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~--~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDE--SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998655311 111222333455566778999999999999989998864 4
Q ss_pred hcCCCCchHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 161 LGEDENNVKALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 161 l~l~p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
+.+-|.=+... ..+ --.+|--..|+-+| ++..|+ |.+.+.+..
T Consensus 81 ltLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~vq~ 124 (140)
T PF10952_consen 81 LTLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN-PEIARLVQH 124 (140)
T ss_pred HHhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHHHh
Confidence 56666422211 011 22455566677666 456776 555555543
No 320
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.60 E-value=1.3 Score=36.72 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=28.4
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
+.|..++..|+|+.|+..|+.+......+.. ..+...++..+..|+..+|+.+..+..+-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-----------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGW-----------WSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455555555555555555555443332222 112223444555555555555555444433
No 321
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=91.30 E-value=0.79 Score=41.11 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=44.6
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccc
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK 66 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~ 66 (266)
+||.+ .+++||+.+|..|+.|+...|.++....|+..+. .+.++.|.+.+..+....
T Consensus 177 ~lg~~-~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-------~gk~~~f~v~i~~I~~~~ 233 (408)
T TIGR00115 177 ELGSG-QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-------AGKEATFKVTVKEVKEKE 233 (408)
T ss_pred EECCC-CcchhHHHHhCCCCCCCeeEEEecCccccCcccC-------CCCeEEEEEEEEEeccCC
Confidence 57887 7999999999999999999999975544543222 467789999988886643
No 322
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.26 E-value=0.41 Score=27.29 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=27.0
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 114 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 114 (266)
+.+-.+|.+.+..++|.+|+..|.+||++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999753
No 323
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=5.2 Score=35.49 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=92.1
Q ss_pred ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh--CHHHHHHHHHhHhcCCCCchHHHHHH
Q 024531 97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RYEEAIGQCSLVLGEDENNVKALFRR 174 (266)
Q Consensus 97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~~ 174 (266)
.-.+.-+.....++..+|+... +.+.+..++.+.+ +|..-+..|+++|+.||.|..+|..+
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~-----------------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR 151 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYG-----------------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYR 151 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHH-----------------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence 3567778888888888888655 5788999988777 48899999999999999987765544
Q ss_pred HHHHH-HcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-----------HHH-HHHHHHHHhcccCCCCCCcc
Q 024531 175 GKARA-ELG---QTDAAREDFLKAGKFAPEDKSIARELRLLAEHE-----------KAV-YKKQKEIYKGIFGPRPEPKQ 238 (266)
Q Consensus 175 g~~~~-~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~-----------~~~-~~~~~~~~~k~~~~~~~~~~ 238 (266)
-.+.. ... ...+-+++..+++.-++.|-.++..-..+...+ +.. ..+-......|| .++.+
T Consensus 152 RfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiF---Tdp~D 228 (421)
T KOG0529|consen 152 RFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIF---TDPED 228 (421)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHh---cCccc
Confidence 33332 222 367788889999999999988877666553311 111 112223344555 56666
Q ss_pred cchhHHHhHHHHHHH
Q 024531 239 KKNWLIIFWQLLVSL 253 (266)
Q Consensus 239 ~~~~~~~~~~~~~~~ 253 (266)
+++|+= .+||.+.
T Consensus 229 qS~WfY--~rWLl~~ 241 (421)
T KOG0529|consen 229 QSCWFY--HRWLLGR 241 (421)
T ss_pred cceeee--hHHhhcc
Confidence 778865 5556554
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.02 E-value=2.6 Score=38.31 Aligned_cols=129 Identities=16% Similarity=0.045 Sum_probs=84.9
Q ss_pred HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHH
Q 024531 91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA 170 (266)
Q Consensus 91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a 170 (266)
...+..|+...|-+....+++..|.++. ....++.++..+|.|+.|.....-+-..-....++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~-----------------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~ 359 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPV-----------------LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST 359 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCch-----------------hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH
Confidence 3445678888888888888888888766 35567888888888888888776655544445566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 171 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 171 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
.--+-...+.+|++++|...-.-.+.-+-+++++..--+ ....+-++-++.=-.++..|...+..+
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa-~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA-GSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec-ccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 666666778888888888887777766556666543222 222222333344445677776555443
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.01 E-value=6.9 Score=31.25 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=82.6
Q ss_pred hHHHHhhc---cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHH-----hhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 90 GNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA-----VKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 90 g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
|-.+++.. +...|-..|.+++........ ............ .-.-+-..+|..+...+++++|+..++.++
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44444443 445788888888876643211 111111111111 112234568899999999999999999999
Q ss_pred cCCCC-ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531 162 GEDEN-NV--KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS-IARELRLLAEHEKAVYKKQKEIYKGIFGPR 233 (266)
Q Consensus 162 ~l~p~-~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~ 233 (266)
....+ +. -+-.|+|.+..++|.+++|+..+..... ++-.. .....+.+.-.++.. ++.+.-|.+.+...
T Consensus 117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k-~~Ar~ay~kAl~~~ 189 (207)
T COG2976 117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDK-QEARAAYEKALESD 189 (207)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCch-HHHHHHHHHHHHcc
Confidence 65433 22 3567899999999999999998864432 22122 222333343334444 44455577777654
No 326
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=91.00 E-value=2.3 Score=38.09 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhh-hhHHHHHH-HhhC-----HH
Q 024531 79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCH-LNMAACLL-KLKR-----YE 151 (266)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~-~n~a~~~~-~~~~-----~~ 151 (266)
.+.......+.|-.++..|+|.+|+..|..+|...|-.... ..++.++.+++...+. |-+|...- ..+. .+
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~--~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~ 277 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVE--SREEEDEAKELIEICREYILGLSIELERRELPKDPVE 277 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 34445556678999999999999999999999988753221 1222233333332232 22332221 1111 11
Q ss_pred HHHHHHH-----hHhcCCCCchHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531 152 EAIGQCS-----LVLGEDENNVKALFRR-GKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206 (266)
Q Consensus 152 ~A~~~~~-----~al~l~p~~~~a~~~~-g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 206 (266)
.....++ .-..+.|.+..--.+. -...++.++|..|...-++.|++.|..+.+..
T Consensus 278 ~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 278 DQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 1111111 1224455444333333 34556899999999999999999998765443
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.98 E-value=5.9 Score=37.12 Aligned_cols=132 Identities=17% Similarity=0.086 Sum_probs=88.9
Q ss_pred HHHHHHHhHHHHhh-----ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-----CHHH
Q 024531 83 ADRRKMDGNALFKE-----EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-----RYEE 152 (266)
Q Consensus 83 ~~~~~~~g~~~~~~-----g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-----~~~~ 152 (266)
+......|.+++.- .|.+.|+..|..+....-... ......+.+.+|.+|.+.. ++..
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a------------~~~~~~a~~~lg~~Y~~g~~~~~~d~~~ 311 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA------------TKGLPPAQYGLGRLYLQGLGVEKIDYEK 311 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH------------hhcCCccccHHHHHHhcCCCCccccHHH
Confidence 34445556666553 589999999999877200000 0012235788999999854 6788
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 024531 153 AIGQCSLVLGEDENNVKALFRRGKARAELG---QTDAAREDFLKAGKFAPEDKSIARELRLLAEH---EKAVYKKQKEIY 226 (266)
Q Consensus 153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~---~~~~~~~~~~~~ 226 (266)
|+..+.++-.+ .++.+.+.+|.++..-. ++..|..+|..|.. -.+..+...+..|... ...........|
T Consensus 312 A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~ 387 (552)
T KOG1550|consen 312 ALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYY 387 (552)
T ss_pred HHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 99999999887 47899999999998877 67899999998875 3456666677777543 222333344444
Q ss_pred hccc
Q 024531 227 KGIF 230 (266)
Q Consensus 227 ~k~~ 230 (266)
++.-
T Consensus 388 k~aA 391 (552)
T KOG1550|consen 388 KKAA 391 (552)
T ss_pred HHHH
Confidence 4443
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.80 E-value=5.9 Score=30.14 Aligned_cols=86 Identities=8% Similarity=-0.114 Sum_probs=69.8
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
+..+.+........++.+++.......--+.|+... +...-|..++..|+|.+|+..++.+.+
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e-----------------~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE-----------------LDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc-----------------cchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 344455555555688889988888887778888655 467789999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHH
Q 024531 163 EDENNVKALFRRGKARAELGQTD 185 (266)
Q Consensus 163 l~p~~~~a~~~~g~~~~~~g~~~ 185 (266)
-.+..+-+--.++.|+..+||.+
T Consensus 73 ~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 73 SAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCCchHHHHHHHHHHHhcCChH
Confidence 88888877778899999999873
No 329
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.70 E-value=2.1 Score=34.82 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=39.6
Q ss_pred hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531 96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 165 (266)
Q Consensus 96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p 165 (266)
..=+..|+..|.+++........ +. . ...+++.+|..+.++|++++|+..+.+++....
T Consensus 138 ~~fl~~Al~~y~~a~~~e~~~~~----~~-----~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 138 KRFLRKALEFYEEAYENEDFPIE----GM-----D--EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCC----Cc-----h--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 33356666667666665433110 00 0 122678899999999999999999999997643
No 330
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.39 Score=37.46 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=35.4
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS 41 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~ 41 (266)
.+|++ .||+|.+.++.-|+.||...+.++|..+|+..+.
T Consensus 2 ~~g~~-~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 2 TLGQG-FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred cccce-EEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 57888 6999999999999999999999999999995554
No 331
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.30 E-value=1.5 Score=36.68 Aligned_cols=62 Identities=15% Similarity=-0.127 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH
Q 024531 102 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180 (266)
Q Consensus 102 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 180 (266)
|...|.+|+.+.|.... .|+.+|..+...|+.-.|+-+|-+++......+.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~-----------------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN-----------------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC-----------------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999665 599999999999999999999999997766678888888888877
No 332
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.14 E-value=5.9 Score=36.76 Aligned_cols=96 Identities=17% Similarity=0.053 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 024531 99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR 178 (266)
Q Consensus 99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 178 (266)
-..++..+...+.+.+..+.. . .... ++..+...+....+.-....++..+|++..++.++|.+.
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~l-------------l-la~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~al 111 (620)
T COG3914 47 QALAIYALLLGIAINDVNPEL-------------L-LAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAAL 111 (620)
T ss_pred hhHHHHHHHccCccCCCCHHH-------------H-HHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHH
Confidence 333667777777776665431 1 1122 678888888998899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHH
Q 024531 179 AELGQTDAAREDFLK-AGKFAPEDKSIARELR 209 (266)
Q Consensus 179 ~~~g~~~~A~~~~~~-al~l~p~~~~~~~~l~ 209 (266)
...|....+...+.. +....|+|..+...+-
T Consensus 112 e~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (620)
T COG3914 112 ELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143 (620)
T ss_pred HHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence 999888888777766 8999999998888873
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.91 E-value=2.5 Score=40.92 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccch--hhhhchhHHHHHHHh-hhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF--MFQLFGKYRDMALAV-KNPCHLNMAACLLKLKRYEEAIGQC 157 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~--~~~~~~~~~~~~~~l-~~~~~~n~a~~~~~~~~~~~A~~~~ 157 (266)
..-..+++.+..+-.++|...|+++|.++=...-+-. ..+.+...+...+.. -..+|..-|+..-..|+.+.|+.+|
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 3334455556666666777777777766422110000 001111111111111 1346777888888899999999988
Q ss_pred HhHhcC---------------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 158 SLVLGE---------------------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 158 ~~al~l---------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
..|-.. ...+--|-|.+|.-|...|++.+|+..|-+|...
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 776432 2245678899999999999999999998887654
No 334
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.24 E-value=18 Score=34.41 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=82.9
Q ss_pred HHHHHHHHhHHHH-hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 82 AADRRKMDGNALF-KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 82 ~~~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
.+......|..++ ...+++.|..+..+++.+.... .. .++...+.+-++.++.+.+... |...++++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~----------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~ 125 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERH-RL----------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKA 125 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-ch----------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence 3667778898888 5689999999999999988652 11 3334455667799998888777 99999999
Q ss_pred hcCCCC----chHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Q 024531 161 LGEDEN----NVKALFRRG--KARAELGQTDAAREDFLKAGKFA--PEDKSIARELRL 210 (266)
Q Consensus 161 l~l~p~----~~~a~~~~g--~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l~~ 210 (266)
++.... .....|++- ..+...+++..|.+.++....+. ++++.+.-.+..
T Consensus 126 I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 126 IEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 876544 233334443 22323379999999999999887 466665544433
No 335
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.14 E-value=2.7 Score=37.48 Aligned_cols=53 Identities=6% Similarity=-0.060 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531 172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 224 (266)
Q Consensus 172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 224 (266)
-.+..||..+++.+-|+....+.+.++|.+..-+-.-+.|...+.++.++.+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999876665566677888888877774
No 336
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.95 E-value=13 Score=31.28 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=57.0
Q ss_pred HHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcCCCCchHHH
Q 024531 93 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGEDENNVKAL 171 (266)
Q Consensus 93 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~ 171 (266)
+++...=..|+..-..+|.++|.... +...+-.|+..++ +..+-+++...+++-+|.|-..|
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYT-----------------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW 115 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYT-----------------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW 115 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccch-----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence 34455668899999999999998543 2333333433333 34555556666666666666666
Q ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHH
Q 024531 172 FRRGKARAELGQTD-AAREDFLKAGKFAPEDKSIA 205 (266)
Q Consensus 172 ~~~g~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~ 205 (266)
..+-.+...+|+.. .-++....++..+..|=.+.
T Consensus 116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaW 150 (318)
T KOG0530|consen 116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAW 150 (318)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHhccccchhhh
Confidence 55555555666555 55555666666555553333
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.91 E-value=0.63 Score=23.83 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCS 158 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~ 158 (266)
++.++|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 57899999999999999998775
No 338
>PRK01490 tig trigger factor; Provisional
Probab=88.84 E-value=1.7 Score=39.40 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=42.7
Q ss_pred ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccc
Q 024531 2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET 65 (266)
Q Consensus 2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~ 65 (266)
.||.+ .+++||+.+|..|+.|+...|.+...-.|+.... .+..+.|.+.+..+...
T Consensus 188 ~lg~~-~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-------agk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 188 ELGSG-RFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-------AGKEATFKVTVKEVKEK 243 (435)
T ss_pred EEcCC-CcchhHHHHhCCCCCCCeeEEEecCccccccccC-------CCCeEEEEEEEEEeccC
Confidence 58888 7999999999999999999998864444432211 34678899988887654
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.34 E-value=8.7 Score=33.25 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=52.8
Q ss_pred HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
.+..+..+++||+.+|++...+..+=.+..+..+-++..+-+++++..+|++..++..+-.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 5677889999999999999998888888889999999999999999999998877654443
No 340
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.07 E-value=15 Score=30.97 Aligned_cols=105 Identities=14% Similarity=0.001 Sum_probs=75.5
Q ss_pred HHHHHhHHHHh----hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh----h---CHHHH
Q 024531 85 RRKMDGNALFK----EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----K---RYEEA 153 (266)
Q Consensus 85 ~~~~~g~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~----~---~~~~A 153 (266)
.....|..+.. ..++.+|...|.++........ ..+..+++.+|..- + +...|
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----------------~~~~~~l~~~~~~g~~~~~~~~~~~~A 174 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----------------ALAMYRLGLAYLSGLQALAVAYDDKKA 174 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH----------------HHHHHHHHHHHHcChhhhcccHHHHhH
Confidence 44556666665 4488999999999988754421 11256677777653 1 23478
Q ss_pred HHHHHhHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531 154 IGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELR 209 (266)
Q Consensus 154 ~~~~~~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 209 (266)
+..+.++-... ++.+.+++|.+|.. -.++.+|..+|.++-+... ......+.
T Consensus 175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 88888887765 78999999988865 4588999999999998776 55555565
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.90 E-value=6 Score=34.91 Aligned_cols=103 Identities=17% Similarity=-0.004 Sum_probs=81.0
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc-chhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD-DFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
--..+......+.++|-+..|++..+-.+.++|. |+.- +++.+-...++.++|+--++.++..
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g----------------~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG----------------VLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch----------------hHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3445566677788899999999999999999998 5542 4556667777888888888888876
Q ss_pred hcCCCC-----chHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 024531 161 LGEDEN-----NVKALFRRGKARAELGQT---------------DAAREDFLKAGKFAPE 200 (266)
Q Consensus 161 l~l~p~-----~~~a~~~~g~~~~~~g~~---------------~~A~~~~~~al~l~p~ 200 (266)
...... -+..-|..+.|+..+++- +.|...+++|+...|.
T Consensus 166 ~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 166 LAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 652111 346778899999999998 9999999999998885
No 342
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.72 E-value=4.6 Score=26.91 Aligned_cols=34 Identities=18% Similarity=-0.007 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 114 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 114 (266)
..+..+...|...-+.|+|.+|+..|..+|+..-
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3466777889999999999999999999999763
No 343
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.65 E-value=4.8 Score=33.44 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=47.3
Q ss_pred hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531 135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN------NVKALFRRGKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al 195 (266)
.+...+|.-|+..|+|++|+..++.+...... ....+..+..|+..+|+.+..+...-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 35678999999999999999999999654322 24567788899999999988887755443
No 344
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.51 E-value=4.5 Score=30.52 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
.......+...+..|+|.-|......++..+|+|.+++.....+...+.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3455556666667777777777777777777777777666665544433
No 345
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.27 E-value=3.2 Score=27.57 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHH
Q 024531 184 TDAAREDFLKAGKFAPEDKSIA 205 (266)
Q Consensus 184 ~~~A~~~~~~al~l~p~~~~~~ 205 (266)
|.+|++.+.+++...|+++.-.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHH
Confidence 3444555566666778766543
No 346
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.21 E-value=21 Score=31.68 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=78.7
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcC----CCCchHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCCHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGE----DENNVKALFRRGKARAE---LGQTDAAREDFLKA-GKFAPEDKSIARE 207 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~a-l~l~p~~~~~~~~ 207 (266)
...|+=.+|....+|+.-+...+..-.+ -++.+...+..|.++.+ .|+.++|+..+..+ ....+.+++....
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 4668888899999999988888777666 44567778888999999 99999999999994 4455678999999
Q ss_pred HHHHHHHHHH--------HHHHHHHHHhcccCCCCC
Q 024531 208 LRLLAEHEKA--------VYKKQKEIYKGIFGPRPE 235 (266)
Q Consensus 208 l~~l~~~~~~--------~~~~~~~~~~k~~~~~~~ 235 (266)
++++++..-. ...+.-..|++.|...++
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 9999776432 344556789999987754
No 347
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.09 E-value=5.2 Score=35.78 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=65.3
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
-..+.-.|||..|++.... |++.... .+ .....-.+.+++..|-||+.+++|.+|+..+..+|-.--. .+
T Consensus 129 lRvh~LLGDY~~Alk~l~~-idl~~~~-l~-------~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r-~k 198 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLEN-IDLNKKG-LY-------TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR-TK 198 (404)
T ss_pred HHHHHhccCHHHHHHHhhc-cCcccch-hh-------ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 3556667899998886544 2222111 00 0001124567999999999999999999999998743111 11
Q ss_pred -HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q 024531 170 -ALFRRGKARA-ELGQTDAAREDFLKAGKFAPE--DKSIARELRL 210 (266)
Q Consensus 170 -a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~ 210 (266)
.+.....-+- -.+..++....+--++.+.|. +..+...+..
T Consensus 199 ~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke 243 (404)
T PF10255_consen 199 NQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE 243 (404)
T ss_pred hhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 1111111111 124456777777778888886 5666555554
No 348
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.53 E-value=16 Score=37.19 Aligned_cols=110 Identities=12% Similarity=-0.052 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
++.+..+..++..+...+++++|+..-.++.-+.....-... .-....|.|++...+..+....|+..+.+
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds---------~~t~~~y~nlal~~f~~~~~~~al~~~~r 1040 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS---------PNTKLAYGNLALYEFAVKNLSGALKSLNR 1040 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC---------HHHHHHhhHHHHHHHhccCccchhhhHHH
Confidence 456777788899999999999999987777654432111000 00223588999999999999999999988
Q ss_pred HhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 160 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 160 al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
++.+ .|.-.-..-+++..+..+++++.|+++++.|+.++
T Consensus 1041 a~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1041 ALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 8754 44445566788999999999999999999999865
No 349
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.23 E-value=5.9 Score=26.44 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
.+..+...|...-+.|+|.+|+..|.++|+..-.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999987643
No 350
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.20 E-value=3.6 Score=37.83 Aligned_cols=77 Identities=16% Similarity=0.030 Sum_probs=64.8
Q ss_pred hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531 147 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL---GQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK 223 (266)
Q Consensus 147 ~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 223 (266)
...+..|+.+|.+++...|.....+.+++.+++.. |+.-.|+.+.-.|++++|....++..|.++...+.+..++..
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 45678999999999999999999999999999986 456788899999999999988888888887766666655443
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.07 E-value=2.3 Score=38.60 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=54.0
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
..-+-....++++|+.|.....-.|.-.-.+++...-.+....++|-+++|.-++++++.++|..
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 33455667789999999999998888777778877777777888999999999999999999853
No 352
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.92 E-value=6.4 Score=35.52 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=50.4
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
.....+.|.-+|..|+|.++...-.-..+..|. +. +|..+|.|.+..++|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-~~-----------------~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-PQ-----------------AYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-HH-----------------HHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 455567888999999999999988888888884 33 5889999999999999999998654
No 353
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.70 E-value=1.6 Score=32.93 Aligned_cols=49 Identities=22% Similarity=0.140 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 184 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 184 (266)
.....|...+..|++..|...++.++..+|+|..+...++.++.++|.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4667888899999999999999999999999999999999998877654
No 354
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=85.53 E-value=2.8 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=28.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 114 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 114 (266)
..+-.+...|...-+.|+|.+|+..|.++++..-
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4566677888889999999999999999998753
No 355
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.34 E-value=3.4 Score=23.12 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHH--HHHhhhcc
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYE--MAIAYMGD 115 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~--~al~~~~~ 115 (266)
+.+...|-.++..|+|++|+..|+ -+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 456678999999999999999954 66666553
No 356
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.24 E-value=4.2 Score=34.40 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=55.3
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
....+.+.+..+...|+++.++..+++.+..+|.+.. ++..+-..|.+.|+...|+..|++.-
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~-----------------~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP-----------------AYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH-----------------HHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3556677888999999999999999999999998655 58888899999999999999998765
Q ss_pred c
Q 024531 162 G 162 (266)
Q Consensus 162 ~ 162 (266)
.
T Consensus 215 ~ 215 (280)
T COG3629 215 K 215 (280)
T ss_pred H
Confidence 4
No 357
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.23 E-value=16 Score=28.60 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=67.1
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDEN---NVKALFRRGKARAELGQTDAAREDFLKAGKFAP--EDKSIARELRL 210 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~ 210 (266)
++..+|.-|.+.|+.+.|++.|.++...... ....++++-.+....++|......+.++-.+-. ++.+.+..|..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 6889999999999999999999998876433 246788889999999999999999999988643 34444433332
Q ss_pred H----HHHHHHHHHHHHHHHhc
Q 024531 211 L----AEHEKAVYKKQKEIYKG 228 (266)
Q Consensus 211 l----~~~~~~~~~~~~~~~~k 228 (266)
. .-.++.+..+.+....-
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 2 22244555555554433
No 358
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.21 E-value=33 Score=32.10 Aligned_cols=84 Identities=13% Similarity=0.049 Sum_probs=48.6
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--hh-chh-----HHHHHHHhhhhhhhhHHHHHHHhhCHHHH
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--QL-FGK-----YRDMALAVKNPCHLNMAACLLKLKRYEEA 153 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--~~-~~~-----~~~~~~~l~~~~~~n~a~~~~~~~~~~~A 153 (266)
.++.+.+.+...-.+|+.+-|.....++|=........ .. .++ .......+ ..+++---..+.+.|.|.-|
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~F-yL~l~r~m~~l~~RGC~rTA 361 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQF-YLALFRYMQSLAQRGCWRTA 361 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHH-HHHHHHHHHHHHhcCChHHH
Confidence 45666777777777777777777777776432110000 00 000 00011122 12233334556678999999
Q ss_pred HHHHHhHhcCCCC
Q 024531 154 IGQCSLVLGEDEN 166 (266)
Q Consensus 154 ~~~~~~al~l~p~ 166 (266)
.++|+-.+.+||.
T Consensus 362 ~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 362 LEWCKLLLSLDPS 374 (665)
T ss_pred HHHHHHHhhcCCc
Confidence 9999999999997
No 359
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.18 E-value=15 Score=31.94 Aligned_cols=76 Identities=20% Similarity=0.121 Sum_probs=58.1
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
+-.|+|.+..+..-...++........- =..+.-.+--+|..+.++|..++|...|++++.+.++..+......++
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4679999888888888888776555432 113445566789999999999999999999999999877766555443
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.15 E-value=10 Score=31.03 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=54.4
Q ss_pred HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 203 (266)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 203 (266)
..+++.+...+|+.....-++-.|.+......+=+.+.-.|+|++|..-++-+-+++|+...
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34567788999999999999999999888777888899999999999999999999998643
No 361
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.98 E-value=11 Score=34.42 Aligned_cols=99 Identities=18% Similarity=0.048 Sum_probs=76.8
Q ss_pred HHHHHHHhHHHH-hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhH
Q 024531 83 ADRRKMDGNALF-KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLV 160 (266)
Q Consensus 83 ~~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~a 160 (266)
+..+.+.|..++ ...+++.|..++++|..+....+.+ .+.+-.++.-++.+|.... .+..|.....++
T Consensus 46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f----------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrka 115 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF----------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKA 115 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH----------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 556667776665 4678999999999998876554332 2234456888999999988 788999999999
Q ss_pred hcCCCCch----HHHHHHHHHHHHcCCHHHHHHHH
Q 024531 161 LGEDENNV----KALFRRGKARAELGQTDAAREDF 191 (266)
Q Consensus 161 l~l~p~~~----~a~~~~g~~~~~~g~~~~A~~~~ 191 (266)
+++....+ +..+.+++.+.-..++..|.+.+
T Consensus 116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 99876654 56778899999999999888774
No 362
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=84.67 E-value=37 Score=32.29 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=105.8
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531 86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE 165 (266)
Q Consensus 86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p 165 (266)
+...|..|-..|+.+.|-..|.+|....=.... -...++.+-|..-++..+++.|+...++|..+--
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~-------------dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVE-------------DLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH-------------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 345677777888888888888888775322111 0233577778778888889999999988876522
Q ss_pred C------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024531 166 N------------------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK 227 (266)
Q Consensus 166 ~------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 227 (266)
. +.+.|-..+......|-++.....|.+++.+-=-.|.+.-+.+-..+..+-.+++-+. |.
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~-YE 535 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA-YE 535 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH-HH
Confidence 1 2455666677777888888888899999998888888888888776666666555555 55
Q ss_pred cccCCCCCCcccchhHHHhHHHHHHHHHHH
Q 024531 228 GIFGPRPEPKQKKNWLIIFWQLLVSLVLGL 257 (266)
Q Consensus 228 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (266)
+-...-+-+... .++-.||.-.|-++
T Consensus 536 rgI~LFk~p~v~----diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 536 RGISLFKWPNVY----DIWNTYLTKFIKRY 561 (835)
T ss_pred cCCccCCCccHH----HHHHHHHHHHHHHh
Confidence 554554544433 44467777666544
No 363
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.67 E-value=2.9 Score=27.78 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM 113 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~ 113 (266)
..+..+-.++..+-+.|++.+|+..|+++++..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999865
No 364
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=84.43 E-value=7.9 Score=26.04 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh----hhchhHHHHHHHhhhhhhhhHHHHH
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF----QLFGKYRDMALAVKNPCHLNMAACL 144 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~----~~~~~~~~~~~~l~~~~~~n~a~~~ 144 (266)
.+.+-...+.|..+-..|+.+.|+..|.+++...-..... ...++.++....+..+.-.+++.+-
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~ 73 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVK 73 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888899999999999999876442221 2244445555554444444444443
No 365
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=83.79 E-value=5.6 Score=26.41 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
+..+-.+..+|...-..|+|++|+..|..+|+..-.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345667778888899999999999999999987643
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=83.76 E-value=11 Score=36.87 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=59.7
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhH----------hcCCCC----------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLV----------LGEDEN----------NVKALFRRGKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~a----------l~l~p~----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al 195 (266)
.|+|.|.-+-..++-+.|+++|+++ |.-+|. +...|-+.|+-+...|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 5888999888899999999999864 333553 34556678999999999999999998775
Q ss_pred hh---------------------CCCCHHHHHHHHHHHHHHHHH
Q 024531 196 KF---------------------APEDKSIARELRLLAEHEKAV 218 (266)
Q Consensus 196 ~l---------------------~p~~~~~~~~l~~l~~~~~~~ 218 (266)
.. +..|..+-.+|++-++..++.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence 42 234556666666655544443
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.53 E-value=2 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=24.3
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
-+++|.+|+.+|+.+.|...++.++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 358999999999999999999999953
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.99 E-value=4.4 Score=32.45 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=51.7
Q ss_pred HHHHHHhhCHHHHHHHHHhHhcCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHH
Q 024531 141 AACLLKLKRYEEAIGQCSLVLGEDE--NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE----DKSIARELRLLAEH 214 (266)
Q Consensus 141 a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~l~~l~~~ 214 (266)
..-+...-.-..|...|-++-. .| +++...+.+|.-|. .-+-++|+..+.++|++.+. |+++...|+.+...
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3333344344667776654432 22 45777777776554 77888899999999988664 58888888888776
Q ss_pred HHHHHH
Q 024531 215 EKAVYK 220 (266)
Q Consensus 215 ~~~~~~ 220 (266)
+++.+.
T Consensus 191 ~~~~e~ 196 (203)
T PF11207_consen 191 LKNYEQ 196 (203)
T ss_pred hcchhh
Confidence 666543
No 369
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.35 E-value=17 Score=36.38 Aligned_cols=67 Identities=24% Similarity=0.165 Sum_probs=51.9
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA-------LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA 205 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a-------~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 205 (266)
|...|.+|..+|+|.+-++.+.-|++-.|+++.. .|++-.+.+.. -..|....--++...|......
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccch
Confidence 7888999999999999999999999999988753 44555444433 3457788888888999765443
No 370
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.34 E-value=26 Score=32.78 Aligned_cols=122 Identities=20% Similarity=0.078 Sum_probs=79.9
Q ss_pred HHHhHHHHh---hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh--
Q 024531 87 KMDGNALFK---EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL-- 161 (266)
Q Consensus 87 ~~~g~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al-- 161 (266)
.+.|..+|. .+-|.+|...|.-+....+.......... ....+..+..+|.++...|+.+-|-....++|
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~s-----sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~ 313 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLIS-----SPYHVDSLLQVADIFRFQGDREMAADLIERGLYV 313 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeecc-----CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 456666665 45688999988888776543211100000 12234457788999999998776666555554
Q ss_pred -----cC--------------CCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 024531 162 -----GE--------------DENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIARELRLLAE 213 (266)
Q Consensus 162 -----~l--------------~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l~~l~~ 213 (266)
.- .|.| ..++|+--+.+.+.|.+..|.++++-.++++|. ||-+...+-.+..
T Consensus 314 ~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 314 FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred HHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 11 1222 346777778888999999999999999999998 7755544444433
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.28 E-value=29 Score=30.88 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=62.1
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH--hhCHHHHHHHHHhH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--LKRYEEAIGQCSLV 160 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~--~~~~~~A~~~~~~a 160 (266)
......++..+|+.++|..|...+...+...|....+ ..+..++.+|.. .-++.+|.+.++..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~---------------~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEY---------------QRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhH---------------HHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4566778899999999999999999998864432211 134444444433 44566776666654
Q ss_pred hcCCC------------------------------C---c-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 161 LGEDE------------------------------N---N-----VKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 161 l~l~p------------------------------~---~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
+..+- . . ..-++.-|.=-...|+|+.|+.-+-+++++
T Consensus 196 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 196 LKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 43210 0 0 011222233334688899999999999886
No 372
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.27 E-value=3.7 Score=27.32 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=28.8
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
+.+-.+...|...-..|+|++|+..|..+++.+-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34566677788888899999999999999998643
No 373
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.75 E-value=2.4 Score=28.29 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=9.2
Q ss_pred HcCCHHHHHHHHHHHHh
Q 024531 180 ELGQTDAAREDFLKAGK 196 (266)
Q Consensus 180 ~~g~~~~A~~~~~~al~ 196 (266)
..|+|++|+.+|+.+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45555555555555544
No 374
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=81.53 E-value=13 Score=24.68 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=31.4
Q ss_pred HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531 151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK-------FAPEDKSIARELRLLAEHEKAVYKKQK 223 (266)
Q Consensus 151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~~l~~l~~~~~~~~~~~~ 223 (266)
.+|+..+.+|++.| ..|+|++|..+|..++. .+ .|+..+..+. .+..++.....
T Consensus 4 ~~A~~l~~~Ave~d---------------~~~~y~eA~~~Y~~~i~~~~~~~k~e-~~~~~k~~ir---~K~~eYl~RAE 64 (75)
T cd02677 4 EQAAELIRLALEKE---------------EEGDYEAAFEFYRAGVDLLLKGVQGD-SSPERREAVK---RKIAEYLKRAE 64 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHH---HHHHHHHHHHH
Confidence 45555555665544 33666666666666555 34 3444443333 55566666555
Q ss_pred HHHhc
Q 024531 224 EIYKG 228 (266)
Q Consensus 224 ~~~~k 228 (266)
+++..
T Consensus 65 ~i~~~ 69 (75)
T cd02677 65 EILRL 69 (75)
T ss_pred HHHHH
Confidence 55543
No 375
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.43 E-value=34 Score=33.77 Aligned_cols=125 Identities=15% Similarity=0.074 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhh-hhhHHHHH----HHh--hCHHH
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC-HLNMAACL----LKL--KRYEE 152 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~-~~n~a~~~----~~~--~~~~~ 152 (266)
........+.|-.+...|+|.+|++.|..+|-..|--... ..+...+.+++...+ -+-.|... .++ .....
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd--~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~ 1065 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVD--SKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQ 1065 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEec--chhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHH
Confidence 5667777789999999999999999999999887742211 011111222222112 11112111 111 12333
Q ss_pred H--HHHHHhHhcCCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531 153 A--IGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206 (266)
Q Consensus 153 A--~~~~~~al~l~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 206 (266)
+ +..|=.-..+.|.+. -++...-.++++++++..|-..-.+.+++.|..+.+..
T Consensus 1066 ~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1066 QLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3 222323346666543 45555567889999999999999999999998776654
No 376
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=80.47 E-value=5.1 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM 113 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~ 113 (266)
+..+..+...|...-..|+|++|+..|..+++..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456777888888999999999999999999875
No 377
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.79 E-value=20 Score=35.89 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=76.4
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC-
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE- 165 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p- 165 (266)
...|+..|..+.|+.|.-.|...-. +..+|..+..+|+|..|.+..++|-...-
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~vSN-------------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNVSN-------------------------FAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHhhh-------------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 4568888888888888777765332 55688888999999999998888753321
Q ss_pred ------------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531 166 ------------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 214 (266)
Q Consensus 166 ------------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 214 (266)
-+..-+-.+..-|...|-|++-+..++.+|-++-.+-....+|+.++.+
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 0123344556677888999999999999999888777777777777654
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.35 E-value=14 Score=24.87 Aligned_cols=59 Identities=12% Similarity=-0.000 Sum_probs=43.7
Q ss_pred hHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH---HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL---FRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~---~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
..|.=++..++..+|+...+++|+..++....+ =.+..+|...|.|.+++++--+=+.+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345445577888999999999998887765543 34677889999999988876554443
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.22 E-value=7 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 182 GQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 182 g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
|+++.|...|++++...|.++.+......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777777777766655443
No 380
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=79.03 E-value=20 Score=26.90 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=37.2
Q ss_pred hhhHHHHHHH-hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 137 HLNMAACLLK-LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 137 ~~n~a~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
|.++|.-++- .|+-+.-.+.++...+-...++..++.+|.+|.++|+..+|-+.+.+|.+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4455543333 333333334444555455567899999999999999999999999998763
No 381
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=78.53 E-value=13 Score=35.51 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=17.9
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024531 165 ENNVKALFRRGKARAELGQTDAAREDFLK 193 (266)
Q Consensus 165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 193 (266)
|++.+.+-.+|..+...|.-++|+++|-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 45555555666666666666666666543
No 382
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.21 E-value=4.2 Score=27.03 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=21.8
Q ss_pred HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
.+|+...++|+..| ..|+|++|+..|..+++.
T Consensus 4 ~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 45555566665544 568888888888888774
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.35 E-value=6.1 Score=31.69 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 154 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~ 154 (266)
+.++.....|..| ...+.++|+..|.+++++.+.+.. +...++..+|.+|.++|+++.|.
T Consensus 139 ~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~-------------~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDN-------------FNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCC-------------CCHHHHHHHHHHHHHhcchhhhh
Confidence 3455556666554 478999999999999999876522 24457889999999999998874
No 384
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=77.10 E-value=18 Score=24.14 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhCCCC
Q 024531 185 DAAREDFLKAGKFAPED 201 (266)
Q Consensus 185 ~~A~~~~~~al~l~p~~ 201 (266)
.+|++.|..++...|+.
T Consensus 30 ~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 30 QEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHHhhCCCH
Confidence 34444555556667753
No 385
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=76.76 E-value=19 Score=23.87 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=28.5
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
..+-.+..+|...-..|+|.+|...|..+|+..-.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44566677788888889999999999999987643
No 386
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=76.26 E-value=8.5 Score=25.30 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 114 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 114 (266)
..+..+...|...-..|+|++|+..|..+++..-
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~ 37 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLL 37 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455667788888888999999999999998653
No 387
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.14 E-value=8 Score=25.50 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG 114 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~ 114 (266)
..+..+...|...-..|++++|+..|..+++..-
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLL 39 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4556677788888889999999999999998753
No 388
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.91 E-value=23 Score=30.94 Aligned_cols=129 Identities=9% Similarity=-0.029 Sum_probs=80.9
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--------h------hchhHHHHHHHh--hhhhhhhHHHHHHHhhCH
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------Q------LFGKYRDMALAV--KNPCHLNMAACLLKLKRY 150 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------~------~~~~~~~~~~~l--~~~~~~n~a~~~~~~~~~ 150 (266)
.+.|..++..++|.+....+..+-.....+.+. . ..++..+.-..+ .+-+++.+|..|+..+++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 467999999999998887776654332111000 0 011111111111 122456678999999999
Q ss_pred HHHHHHHHhHhc------------------------CCCCch-----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531 151 EEAIGQCSLVLG------------------------EDENNV-----------KALFRRGKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 151 ~~A~~~~~~al~------------------------l~p~~~-----------~a~~~~g~~~~~~g~~~~A~~~~~~al 195 (266)
+.|.--++++.. .+|+.. ..|.+...-|..-.++-.+-.+|..++
T Consensus 142 ~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~l 221 (449)
T COG3014 142 AKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGL 221 (449)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 888888877762 233321 134556777777788888888888888
Q ss_pred hhCCCCHHHHHHHHHHHHHHH
Q 024531 196 KFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 196 ~l~p~~~~~~~~l~~l~~~~~ 216 (266)
...|++ ++.+.+..+.+...
T Consensus 222 f~a~n~-dv~kg~~~~~e~~g 241 (449)
T COG3014 222 FYALNG-DVNKGLGYLNEAYG 241 (449)
T ss_pred hcccCc-cHhHHHHHHHHHhc
Confidence 888887 77777777766544
No 389
>PF15469 Sec5: Exocyst complex component Sec5
Probab=75.83 E-value=26 Score=27.42 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=19.7
Q ss_pred HHHhhccHHHHHHHHHHHHhhhcc
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
.+...|+|+.++..|.+|-.+...
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~ 118 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEK 118 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHH
Confidence 345689999999999999887654
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.27 E-value=28 Score=34.14 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=74.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG 162 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~ 162 (266)
++..--.|.+...+|+++.|++.-..++...|..... ..+.++.+.|.+..-.|++++|..+...+.+
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~------------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR------------SRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch------------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 3444456778888999999999999999998875432 1345789999999999999999999998886
Q ss_pred C----CCC--chHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 024531 163 E----DEN--NVKALFRRGKARAELGQ--TDAAREDFLKA 194 (266)
Q Consensus 163 l----~p~--~~~a~~~~g~~~~~~g~--~~~A~~~~~~a 194 (266)
+ +.. ...+.+..+.++..+|+ +.+....|...
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLI 565 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6 222 34566778999999993 44444444443
No 391
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.26 E-value=39 Score=26.72 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=48.7
Q ss_pred HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH-hcCCCC
Q 024531 88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV-LGEDEN 166 (266)
Q Consensus 88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a-l~l~p~ 166 (266)
..|....+.|+-..|+..|..+-.-.|..... .-.+...-|..++..|.|++...-.+.. -.-+|-
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~dt~~P~~~-------------rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~m 165 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAADTSIPQIG-------------RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPM 165 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhccCCCcchh-------------hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChh
Confidence 44555566666666666666554433221100 0112333445555555665544433321 122333
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 167 NVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
...+.--+|.+-.+-|++..|...|..+..
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444555566677777777777777766655
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.53 E-value=13 Score=29.31 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=43.3
Q ss_pred HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
....++...+.++..| ++..+.+++.++..+|+.++|....+++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4555666777788887 6889999999999999999999999999999994
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.00 E-value=96 Score=30.67 Aligned_cols=105 Identities=18% Similarity=0.064 Sum_probs=78.3
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
...+-.+....+|++|.....++....+...... ...+.....--.|.+....|+++.|++.++.++..=|.
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~--------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR--------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc--------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 3445566677888888888888777665521110 02223334455788888899999999999999988776
Q ss_pred c-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531 167 N-----VKALFRRGKARAELGQTDAAREDFLKAGKFAP 199 (266)
Q Consensus 167 ~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 199 (266)
+ .-++...|.+.+-.|++++|....+.+.++.-
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 4 45778899999999999999999999998843
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.97 E-value=19 Score=30.76 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA 217 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 217 (266)
.+.+...+..|...|.+.+|+...++++.++|-+....+.|..+....+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 45566678899999999999999999999999988888888877655544
No 395
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=73.78 E-value=68 Score=28.83 Aligned_cols=67 Identities=25% Similarity=0.199 Sum_probs=53.0
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHh--cCCCCch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVL--GEDENNV--KALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al--~l~p~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 202 (266)
+.+.+=.+|+..+.|+.|.....+.. +.+.++. ..+|.+|.+..-+++|..|.++|-.|+...|.+.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34456688888899999988877765 2333344 4567899999999999999999999999999843
No 396
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.61 E-value=68 Score=28.75 Aligned_cols=85 Identities=15% Similarity=0.057 Sum_probs=65.8
Q ss_pred HhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH---HH
Q 024531 146 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV---YK 220 (266)
Q Consensus 146 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~---~~ 220 (266)
+..-+++-+.+...+|..+|++..+|+.+..++.+.+. +..-++.++++++.||.|-.+...-.-+....+.. ..
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 33457788888999999999999999999999997754 68889999999999999988887777776655554 44
Q ss_pred HHHHHHhccc
Q 024531 221 KQKEIYKGIF 230 (266)
Q Consensus 221 ~~~~~~~k~~ 230 (266)
.+-..-.++.
T Consensus 167 ~El~ftt~~I 176 (421)
T KOG0529|consen 167 EELEFTTKLI 176 (421)
T ss_pred hHHHHHHHHH
Confidence 4444334444
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.27 E-value=64 Score=29.77 Aligned_cols=99 Identities=6% Similarity=-0.055 Sum_probs=69.7
Q ss_pred HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI 229 (266)
Q Consensus 150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~ 229 (266)
...-...|+.|+.-.+.+++.|.+...-..+.+.+.+-...|.+++..+|+|++++-..+.-.=.....-+..+.++-+-
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34556678888888888899888877666677779999999999999999999988655543222333345667777777
Q ss_pred cCCCCCCccc-chhHHHhHH
Q 024531 230 FGPRPEPKQK-KNWLIIFWQ 248 (266)
Q Consensus 230 ~~~~~~~~~~-~~~~~~~~~ 248 (266)
+...+++..- ..|+++-+.
T Consensus 167 LR~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRMELM 186 (568)
T ss_pred hhcCCCChHHHHHHHHHHHH
Confidence 7666665433 444444433
No 398
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.05 E-value=12 Score=27.44 Aligned_cols=79 Identities=15% Similarity=0.052 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCC---------------chHHHHHHHHHHHHcCCHHHHHHHHHHH----Hhh
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDEN---------------NVKALFRRGKARAELGQTDAAREDFLKA----GKF 197 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~---------------~~~a~~~~g~~~~~~g~~~~A~~~~~~a----l~l 197 (266)
+.++|...++.+++-.++-+|++|+.+..+ ..-.-.++|.-+..+|+.+=.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999865321 1234568999999999999999998754 556
Q ss_pred CCCC-----HHHHHHHHHHHHHH
Q 024531 198 APED-----KSIARELRLLAEHE 215 (266)
Q Consensus 198 ~p~~-----~~~~~~l~~l~~~~ 215 (266)
-|.- ......|+-++..+
T Consensus 84 iPQCp~~~C~afi~sLGCCk~AL 106 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKAL 106 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHH
Confidence 6642 23344455454443
No 399
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.01 E-value=50 Score=27.74 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh----hCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531 100 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----KRYEEAIGQCSLVLGEDENNVKALFRRG 175 (266)
Q Consensus 100 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~~g 175 (266)
..|...|.++-.... ..+..++|.+|..- .++.+|...|.++-+... ..+.++++
T Consensus 172 ~~A~~~~~~aa~~~~-------------------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 172 KKALYLYRKAAELGN-------------------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HhHHHHHHHHHHhcC-------------------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 366777777666542 22678899888663 379999999999998875 89999999
Q ss_pred HHHHHcC---------------CHHHHHHHHHHHHhhCCCC
Q 024531 176 KARAELG---------------QTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 176 ~~~~~~g---------------~~~~A~~~~~~al~l~p~~ 201 (266)
++...| +...|...+..+....+..
T Consensus 231 -~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 231 -LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred -HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 777666 7888888888887766643
No 400
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.37 E-value=47 Score=28.72 Aligned_cols=82 Identities=12% Similarity=-0.042 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHH---H
Q 024531 99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR---G 175 (266)
Q Consensus 99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~---g 175 (266)
.+.-+..|.+||+.+|++.. ++..+-.+..+.-+.+....-.++++..+|+++..|-.. -
T Consensus 47 ~E~klsilerAL~~np~~~~-----------------L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSER-----------------LLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 46678889999999887543 344444555566788888889999999999887655332 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 024531 176 KARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~al~l 197 (266)
+..+..-.+......|.+++..
T Consensus 110 q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 110 QSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHhccCcHHHHHHHHHHHHHH
Confidence 2223344577888888888774
No 401
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.35 E-value=6 Score=33.37 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=42.5
Q ss_pred HhhCHHHHHHHHHhHhcCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 146 KLKRYEEAIGQCSLVLGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 146 ~~~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
+..+.++|+.-|.+++++.|.. .+|+-..-.+++.+++|++-+..|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3457999999999999999875 46777888899999999988888877665
No 402
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.25 E-value=65 Score=27.97 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=65.9
Q ss_pred hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC------c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHH
Q 024531 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN------N--VKALFRRGKARAELGQTDAAREDFLKAGK--FAPEDKS 203 (266)
Q Consensus 134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~------~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~ 203 (266)
..+...+|..|-+.++|..|...+ .++.++.. + ..-+.++|.+|...++-.+|..+..++-- .+..|+.
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 446778999999999999987765 34444431 1 22456889999999999999999988643 3557888
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHH
Q 024531 204 IARELRLLAEH----EKAVYKKQKEIY 226 (266)
Q Consensus 204 ~~~~l~~l~~~----~~~~~~~~~~~~ 226 (266)
..-.++.|+.+ .++.-++.+.+|
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777654 445555666654
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.16 E-value=79 Score=29.41 Aligned_cols=58 Identities=22% Similarity=0.116 Sum_probs=46.7
Q ss_pred HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCCC
Q 024531 144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE--------------------LGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~--------------------~g~~~~A~~~~~~al~l~p~~ 201 (266)
|....+|.+|+......|+.|..+.+|.-++-.-+.. -.++.+|+.+|++.+..+.+|
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 3345689999999999999999888876665554444 678899999999999988776
No 404
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=72.14 E-value=54 Score=31.29 Aligned_cols=117 Identities=8% Similarity=-0.047 Sum_probs=60.4
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccch--hhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF--MFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~--~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~ 158 (266)
+.+..+.+=|..-....+++.|++..+.|...-.... .+...+..+.-+ --...+....+..--..|-++.....|+
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl-hrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL-HRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH-HHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3455566667777788899999999888876532211 111111111100 0011223333444444455555555555
Q ss_pred hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
+++.+.--.+....+.|..+....-+++|.+.|++.+.+-
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 5555555555555555555555555555555555555543
No 405
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=71.81 E-value=26 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=8.9
Q ss_pred HcCCHHHHHHHHHHHHh
Q 024531 180 ELGQTDAAREDFLKAGK 196 (266)
Q Consensus 180 ~~g~~~~A~~~~~~al~ 196 (266)
..|+|++|+..|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44555555555555444
No 406
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.40 E-value=52 Score=30.51 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=77.5
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK 216 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 216 (266)
+..+-..+-..-.+.-....|+++|... .+-.+++.+++||... ..++-...+++..+.+-++...-..|...++..+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik 146 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 3334444444556777888999999876 5678999999999988 6677788899999999999888888888776644
Q ss_pred HHHHHHHHHHhcccCCCCCCcccchhHHHhHHHHHHHHH
Q 024531 217 AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVL 255 (266)
Q Consensus 217 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (266)
.. +....|+|+....-.-.+..+- +-.|..|.++|.
T Consensus 147 ~s--k~a~~f~Ka~yrfI~~~q~~~i-~evWeKL~~~i~ 182 (711)
T COG1747 147 KS--KAAEFFGKALYRFIPRRQNAAI-KEVWEKLPELIG 182 (711)
T ss_pred hh--hHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHhcc
Confidence 33 4445677765322111222222 335777777554
No 407
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.09 E-value=57 Score=26.81 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=51.8
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
...+.+.+..++|+.....-++..|.+.. +...+=..+.-.|+|++|...++-+-.++|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~-----------------~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAG-----------------GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcccc-----------------chhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 44677888999999999999999998654 3445556777899999999999999999998754
No 408
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=70.69 E-value=10 Score=25.51 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
|+.|..+.++||..| ..|+.++|+.+|++++.
T Consensus 5 ~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 455555555555554 33555555555555554
No 409
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=70.66 E-value=17 Score=26.63 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccc
Q 024531 76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD 116 (266)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~ 116 (266)
.+++........+.|..+...|++.+|+.+|-+||..+|..
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 34444555666788999999999999999999999999874
No 410
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=69.93 E-value=38 Score=34.70 Aligned_cols=108 Identities=15% Similarity=0.056 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
...+....+.|......|.+.+|.+ ..+++.+..+-.. ....-...+|..++..+.+++++++|+..+.+
T Consensus 929 ~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~---------~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 929 VSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMG---------VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred cchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhh---------hcchhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 3556777788888888888888888 6666666543111 01111345788999999999999999999988
Q ss_pred HhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 160 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 160 al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
+.-+ .|+...++-+++...+..++...|+..+.+++.+
T Consensus 999 a~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 999 ACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred ceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 7644 2445678889999999999999999999999886
No 411
>PF12854 PPR_1: PPR repeat
Probab=69.82 E-value=15 Score=19.91 Aligned_cols=27 Identities=22% Similarity=0.126 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024531 167 NVKALFRRGKARAELGQTDAAREDFLK 193 (266)
Q Consensus 167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~ 193 (266)
|.-.|..+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455666677777788888888777754
No 412
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=67.74 E-value=16 Score=19.50 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Q 024531 169 KALFRRGKARAEL----GQTDAAREDFLKAGKF 197 (266)
Q Consensus 169 ~a~~~~g~~~~~~----g~~~~A~~~~~~al~l 197 (266)
.+.+.+|.+|..- .+..+|...|+++-+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4556666666532 2667777777766543
No 413
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=67.55 E-value=20 Score=23.00 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=8.2
Q ss_pred HcCCHHHHHHHHHHHHh
Q 024531 180 ELGQTDAAREDFLKAGK 196 (266)
Q Consensus 180 ~~g~~~~A~~~~~~al~ 196 (266)
..|+|++|+..|..++.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44555555555444443
No 414
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=66.77 E-value=16 Score=20.02 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=18.1
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhh
Q 024531 169 KALFRRG--KARAELG-----QTDAAREDFLKAGKF 197 (266)
Q Consensus 169 ~a~~~~g--~~~~~~g-----~~~~A~~~~~~al~l 197 (266)
.+.+++| .+|..-. ++++|..+|+++-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 5667777 4444433 467777777777654
No 415
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=66.07 E-value=32 Score=22.55 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhCCC
Q 024531 187 AREDFLKAGKFAPE 200 (266)
Q Consensus 187 A~~~~~~al~l~p~ 200 (266)
|++.|.+++..+|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 33444444545554
No 416
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.68 E-value=88 Score=35.83 Aligned_cols=86 Identities=19% Similarity=0.055 Sum_probs=64.1
Q ss_pred HhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhhCCCCH
Q 024531 131 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL----GQ----TDAAREDFLKAGKFAPEDK 202 (266)
Q Consensus 131 ~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~----g~----~~~A~~~~~~al~l~p~~~ 202 (266)
+.....+...|.-+.++|+.++|-..|..|+.++-.-+++|...|.-+..+ .. -..|+.||-+|....- +.
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~-~s 2887 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN-SS 2887 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc-ch
Confidence 334556788899999999999999999999999988899999888755432 22 2567887877776653 35
Q ss_pred HHHHHHHHHHHHHHH
Q 024531 203 SIARELRLLAEHEKA 217 (266)
Q Consensus 203 ~~~~~l~~l~~~~~~ 217 (266)
.+++.++++.-...-
T Consensus 2888 kaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLSF 2902 (3550)
T ss_pred hhHHHHHHHHHHHHh
Confidence 667777777554443
No 417
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.48 E-value=56 Score=30.31 Aligned_cols=65 Identities=23% Similarity=0.155 Sum_probs=54.2
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcC---CCC----chHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGE---DEN----NVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPED 201 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l---~p~----~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~ 201 (266)
+.-+|.++..+|+...|..++..+++. .-. .|-|+|.+|..+..++. ..+|.+++.+|-+...++
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 456799999999999999999888733 111 36799999999999999 999999999999887654
No 418
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=64.33 E-value=12 Score=33.98 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=39.9
Q ss_pred CccCCCCccchhHHHHhhcCCCCcEEEEEEe-c-CcccCCCCCCCCCCCCCCCceEEEEEEeeccccc
Q 024531 1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVG-W-ELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK 66 (266)
Q Consensus 1 ~~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~-~-~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~ 66 (266)
++||++ .-|+||+..|--|+.|+...|.++ | .|.-+.. .+.+..|.+.+..+....
T Consensus 187 l~lGs~-~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L---------aGK~a~F~V~vkeVk~~e 244 (441)
T COG0544 187 LELGSG-RFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL---------AGKEATFKVKVKEVKKRE 244 (441)
T ss_pred EEEcCC-CchhhHHhhhccCcCCCeeEEEEEcccccchhHh---------CCCceEEEEEEEEEeecC
Confidence 468999 899999999999999999887654 3 3322211 234567888888775543
No 419
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=63.99 E-value=23 Score=23.75 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=37.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531 177 ARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 177 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~ 231 (266)
.+.+....+-|+.++.--|..+|+|..++..........++..++ |.+.||
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l~~~----Ye~~yG 54 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQLKKE----YEKRYG 54 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHH----HHHHhC
Confidence 445666778899999999999999999988888765554444433 555555
No 420
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.96 E-value=47 Score=30.26 Aligned_cols=26 Identities=12% Similarity=-0.121 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.+..+|...+..|+++-|..+|.++=
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 37778888888888888888887753
No 421
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=62.51 E-value=1.2e+02 Score=27.33 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=65.6
Q ss_pred HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC--------------H
Q 024531 85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR--------------Y 150 (266)
Q Consensus 85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~--------------~ 150 (266)
..+..|+..|-.+||+.|...|..+..-..++..... ...++--.|.|.+..+. +
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~-----------~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~l 278 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKY-----------LAGAQEMAALSLLMQGQSISAKIRKDEIEPYL 278 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHH-----------HHhHHHHHHHHHHhcCCCCccccccccHHHHH
Confidence 4567899999999999999999999875544322111 12233334444444442 4
Q ss_pred HHHHHHHHhH----hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 151 EEAIGQCSLV----LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 151 ~~A~~~~~~a----l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
+.|...|.++ ......-..+.+..+.++...+.|.+|...+-+....
T Consensus 279 e~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 279 ENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 5555556552 2222234566777788888999998888877777655
No 422
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=62.13 E-value=48 Score=23.51 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
..+...+......|...+..|||..|.+...++-+..+.
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 345667788888999999999999999999999776444
No 423
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=62.02 E-value=7.5 Score=33.88 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=38.2
Q ss_pred hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHH
Q 024531 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARA 179 (266)
Q Consensus 133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 179 (266)
..++++-++..++.+.+++.|+.....+....|++....-.+..+-.
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34579999999999999999999999999999998765544444333
No 424
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=61.17 E-value=18 Score=19.00 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=14.8
Q ss_pred HHHHHhHhcCCCCchHHHHHHHHHHH
Q 024531 154 IGQCSLVLGEDENNVKALFRRGKARA 179 (266)
Q Consensus 154 ~~~~~~al~l~p~~~~a~~~~g~~~~ 179 (266)
+.....++..+|.|..++..+-.+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 45556666666666666555544443
No 425
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=60.47 E-value=96 Score=26.66 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=35.8
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531 153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 199 (266)
Q Consensus 153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 199 (266)
+.--+.+.|.-+.++..++...|.++..+|+....+.+.-+.--++|
T Consensus 91 ~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~Fldp 137 (366)
T KOG1118|consen 91 VMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDP 137 (366)
T ss_pred HHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33345566777888888888888888888888888887777666666
No 426
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.00 E-value=37 Score=32.03 Aligned_cols=71 Identities=24% Similarity=0.201 Sum_probs=50.0
Q ss_pred HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHH
Q 024531 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA--------PEDKSIARELRLLAE 213 (266)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~l~~ 213 (266)
.+.+++|+++.|.+...++ ++..=|-.+|.+....+++..|.+||.++..+. .+|.+.+..++...+
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 4456788888887754433 456668889999999999999999999987653 345665555555544
Q ss_pred HHHH
Q 024531 214 HEKA 217 (266)
Q Consensus 214 ~~~~ 217 (266)
+++.
T Consensus 720 ~~g~ 723 (794)
T KOG0276|consen 720 KQGK 723 (794)
T ss_pred hhcc
Confidence 4443
No 427
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=59.52 E-value=31 Score=22.51 Aligned_cols=15 Identities=27% Similarity=0.138 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHHHH
Q 024531 181 LGQTDAAREDFLKAG 195 (266)
Q Consensus 181 ~g~~~~A~~~~~~al 195 (266)
.|+|++|+..|..++
T Consensus 19 ~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 19 DGNYEEALELYKEAL 33 (75)
T ss_pred cCCHHHHHHHHHHHH
Confidence 344444444444443
No 428
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=59.41 E-value=38 Score=24.05 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=31.4
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCC
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 183 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 183 (266)
....|..-+-.|+|..|.+...++-+..+...-.+.--+.+-..+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 44556666677778888877777766655555566666666666654
No 429
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.96 E-value=77 Score=26.83 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHH-HHHHHHHhHhcCCCCchHHHHHHHHH
Q 024531 99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE-EAIGQCSLVLGEDENNVKALFRRGKA 177 (266)
Q Consensus 99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~-~A~~~~~~al~l~p~~~~a~~~~g~~ 177 (266)
..+-++...+.+.-.|.+.. +...+-.+.-.+|++. .-+.++..+|..|..|-.||-.+--|
T Consensus 94 L~~El~~l~eI~e~npKNYQ-----------------vWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~ 156 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQ-----------------VWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWV 156 (318)
T ss_pred HHHHHHHHHHHHHhCccchh-----------------HHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHH
Confidence 44455556666665555322 3444444444555555 56666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 178 RAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 178 ~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
....+.|+.-+.+....++.|--|
T Consensus 157 ~r~F~~~~~EL~y~~~Lle~Di~N 180 (318)
T KOG0530|consen 157 LRFFKDYEDELAYADELLEEDIRN 180 (318)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhc
Confidence 666666666666666666655433
No 430
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=58.87 E-value=98 Score=25.16 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=62.0
Q ss_pred hhhhhhHHHHHHHhh-CHHHHHHHHHh-Hh-cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 134 NPCHLNMAACLLKLK-RYEEAIGQCSL-VL-GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 134 ~~~~~n~a~~~~~~~-~~~~A~~~~~~-al-~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
+++..+-|..|.... .|.+++..+.. +| .-||....++..+|.+...+.++-+-+-.=-.-.-..|-+.-+...+..
T Consensus 25 ~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~ 104 (215)
T cd07642 25 VKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKG 104 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445667777776655 47888888877 34 4466667788888888888877765443322222235665666667777
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 024531 211 LAEHEKAVYKKQKEIYKGIFG 231 (266)
Q Consensus 211 l~~~~~~~~~~~~~~~~k~~~ 231 (266)
++...++.-++..++|..++.
T Consensus 105 vK~d~KK~fdK~~~dyE~~~~ 125 (215)
T cd07642 105 VKGDLKKPFDKAWKDYETKVT 125 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 765555555566666665553
No 431
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=57.78 E-value=85 Score=28.53 Aligned_cols=125 Identities=16% Similarity=0.089 Sum_probs=71.9
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh------hhch--hHH--HHHHHhhhhhhhhHHHHHHHhhCHHH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF------QLFG--KYR--DMALAVKNPCHLNMAACLLKLKRYEE 152 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------~~~~--~~~--~~~~~l~~~~~~n~a~~~~~~~~~~~ 152 (266)
....+..|...+..++|..++..+..||+..-...+. +..+ ... +....-...++ ++. +-..=+...
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~--~a~-fg~~le~a~ 107 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLY--LAI-FGHLLERAA 107 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhH--HHH-HHHHHHHHH
Confidence 3455678888889999999999999998765321110 0010 000 00000000000 000 000001222
Q ss_pred HHHHHHhHhcCCCCc----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 153 AIGQCSLVLGEDENN----------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 153 A~~~~~~al~l~p~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
.+.-|...+.-.|.+ -..|..+-.+|++.|++.+|++.-.-.+.-+|++..+...+..
T Consensus 108 Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldy 175 (471)
T KOG4459|consen 108 CLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDY 175 (471)
T ss_pred HHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHH
Confidence 333344444333332 2567788899999999999999999999999999988877763
No 432
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=57.60 E-value=1.3e+02 Score=26.38 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=76.9
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
.+-|..+....+|..|-.+|-+|.+-...-... .+.+..-=|.-++.+....-+--.++-....+++.+..
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~---------v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~ 283 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD---------VKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGR 283 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCc---------HHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCc
Confidence 345666777789999999999988865432110 01111111444455554444455566667788888888
Q ss_pred chHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531 167 NVKALFRRGKARAE--LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH 214 (266)
Q Consensus 167 ~~~a~~~~g~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 214 (266)
+..|.-..+.++.+ +.+|+.|+..|..-+.- ++-++.++..++..
T Consensus 284 ~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~---D~ivr~Hl~~Lyd~ 330 (411)
T KOG1463|consen 284 DIDAMKAVAEAFGNRSLKDFEKALADYKKELAE---DPIVRSHLQSLYDN 330 (411)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhc---ChHHHHHHHHHHHH
Confidence 99999999988875 47889999999887764 45667777766544
No 433
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.55 E-value=47 Score=36.33 Aligned_cols=93 Identities=8% Similarity=-0.005 Sum_probs=57.6
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC--HHHHHHHHHhH
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR--YEEAIGQCSLV 160 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~--~~~A~~~~~~a 160 (266)
.+...++|..+.+.|+-..|+...++.++.+-.+.....++........+..++.+..+.-.-..++ ...-+.+|..|
T Consensus 1702 ~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1702 PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3445677888888999999999999998665333221112222222222233333334333333333 45677899999
Q ss_pred hcCCCCchHHHHHHH
Q 024531 161 LGEDENNVKALFRRG 175 (266)
Q Consensus 161 l~l~p~~~~a~~~~g 175 (266)
.+..|...+.||.+|
T Consensus 1782 ~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHcccccCceeeHH
Confidence 999998888888887
No 434
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=57.23 E-value=65 Score=28.33 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=42.1
Q ss_pred hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024531 147 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 193 (266)
Q Consensus 147 ~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 193 (266)
....-+|+..++.++..+|.|......+..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33477899999999999999999999999999999999999888853
No 435
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=56.89 E-value=1.5e+02 Score=26.54 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=41.3
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH--hhCHHHHHHHHH
Q 024531 86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--LKRYEEAIGQCS 158 (266)
Q Consensus 86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~--~~~~~~A~~~~~ 158 (266)
-...+..+|+.++|..|...|..++...++.... -....+.+++.+|.. .-++.+|.+.++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~------------~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNH------------TFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhh------------hHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3456778999999999999999999875432110 022245566666654 446777887777
No 436
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.65 E-value=1.3e+02 Score=25.75 Aligned_cols=104 Identities=13% Similarity=-0.013 Sum_probs=63.7
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV 168 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~ 168 (266)
+|+.+|..++|..-.+...+.-..+..+. ++.......-...+|..--+.|...++..+-...|.++|.+...-+
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~ed-----GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTED-----GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhcccc-----CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 48888888888877666666555443211 1111111111222344445677777777777777888887754322
Q ss_pred HH------HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 169 KA------LFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 169 ~a------~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
.. .-.=|..+..-|+|++|..+|-.|+.-
T Consensus 226 HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 226 HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 21 112367788899999999999988875
No 437
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=56.55 E-value=45 Score=28.15 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=62.2
Q ss_pred HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc----
Q 024531 92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---- 167 (266)
Q Consensus 92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---- 167 (266)
.++..++.-.|+..|...+...|.+...-.+. .-.+ ...|.....|+. --....|.+.++.||-+....
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~--a~~l----Ek~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~ 76 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFK--AACL----EKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRS 76 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeeh--hhhH----HHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCcc
Confidence 34445556667777777776666532210000 0000 112333444442 223566888888888554322
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 168 --VKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 168 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
.-+.++.+..|+.+.+|+-|..+|.+|+.+--++
T Consensus 77 ~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 77 KIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred eeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 2357788999999999999999999999985543
No 438
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=56.49 E-value=41 Score=32.67 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=49.9
Q ss_pred hHHHHhhccHHHHHHHHHHHHhhhccchhh----------hhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMF----------QLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
|..+-+.|+++.|+.+|-++-.+....... ...++.++ +......|-..|.-|...|+|+.|...|.+
T Consensus 713 g~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqd--qk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQD--QKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhh--hccccccchHHHHHhccchhHHHHHHHHHh
Confidence 566666777777777766553332110000 00011111 111222355567777777777777777766
Q ss_pred HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531 160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 195 (266)
+=..+ . .-..|-+.|.|.+|.+.-+++.
T Consensus 791 ~~~~~----d----ai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 791 ADLFK----D----AIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred cchhH----H----HHHHHhccccHHHHHHHHHHhc
Confidence 53221 1 1234556778877777666554
No 439
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.02 E-value=23 Score=17.91 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=9.6
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 024531 175 GKARAELGQTDAAREDFLKA 194 (266)
Q Consensus 175 g~~~~~~g~~~~A~~~~~~a 194 (266)
-.+|.+.|++++|.+.|++.
T Consensus 7 i~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHccchHHHHHHHHHHH
Confidence 34444555555555554443
No 440
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.85 E-value=1.2e+02 Score=29.30 Aligned_cols=56 Identities=11% Similarity=-0.047 Sum_probs=42.8
Q ss_pred HHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 141 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 141 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
....+..++|+.+...+...-..........|.+|.++..+|+-++|...|+++..
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33445788888877777664333335678999999999999999999999998754
No 441
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=55.82 E-value=32 Score=29.79 Aligned_cols=100 Identities=8% Similarity=-0.022 Sum_probs=64.1
Q ss_pred HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531 158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
.++-..-|++++.|...+.-....+.|.+-...|..++..+|.|.+.+-....-+-..-..-+..+.+|.+-+...++++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 34444567888888877777778889999999999999999999887644222222222333466777888777766654
Q ss_pred cc-chhHHHhHHHHHHHHHHHhhhh
Q 024531 238 QK-KNWLIIFWQLLVSLVLGLFKRK 261 (266)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
.- .+|++. =+..+--+|.|.
T Consensus 177 ~iw~eyfr~----El~yiTKL~~R~ 197 (435)
T COG5191 177 RIWIEYFRM----ELMYITKLINRR 197 (435)
T ss_pred hHHHHHHHH----HHHHHHHHHhhH
Confidence 33 334333 334444444443
No 442
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.31 E-value=77 Score=27.98 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531 78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI 154 (266)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~ 154 (266)
.....+..+...|+.++..++|+.|...|..|..+.....- +... -...+++..|.+++.++++...+
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~G-----e~~~----e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYG-----EKHL----ETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhh-----hhHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888999999999999999999999999998754221 0000 01224566677777766655433
No 443
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.60 E-value=80 Score=31.04 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
.+.++.-|+.+|.+|+|++|...|-++|.....
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 445566799999999999999999999986543
No 444
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=53.97 E-value=1.8e+02 Score=26.62 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=35.1
Q ss_pred HHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531 145 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 145 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 195 (266)
+++|+.+.|.+.++ ..+++.-|-++|.....+|+++-|..+|+++-
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 45666666666442 22467789999999999999999999999874
No 445
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=53.70 E-value=47 Score=25.27 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHhHHHHhhc-cHHHHHHHHHHHHhhhccc
Q 024531 75 TVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDD 116 (266)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~ 116 (266)
..+++......-.++|..+...| ++.+|..+|-+||..+|..
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 45566666677778999999999 9999999999999999874
No 446
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=53.27 E-value=1.6e+02 Score=27.71 Aligned_cols=76 Identities=4% Similarity=-0.148 Sum_probs=57.6
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA 212 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 212 (266)
+++.+-.-+... -++++...|++.+...|..+.+|-.-....+...+|+.-...|.+||.--=+-.-....|..+.
T Consensus 22 sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 22 SWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVR 97 (656)
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 455555544434 8999999999999999999999988888889999999999999999975444333333444443
No 447
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.59 E-value=65 Score=27.90 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
...+-.+...+...-+.++|.+|...|+.++++.-.
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 344555666777777889999999999999987643
No 448
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.32 E-value=25 Score=18.33 Aligned_cols=24 Identities=8% Similarity=-0.072 Sum_probs=14.2
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~a 160 (266)
|..+-.++.+.|+++.|...++.-
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445556666666666666665544
No 449
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.29 E-value=1.3e+02 Score=25.89 Aligned_cols=101 Identities=10% Similarity=-0.024 Sum_probs=59.6
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHH----------HHHH
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE----------AIGQ 156 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~----------A~~~ 156 (266)
.+.++...+.+++.+|+..|.+.+.---...+ ...++ ......+++..|...|++.. +...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~de--k~~nE-------qE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ 77 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDE--KTLNE-------QEATVLELFKLYVSKGDYCSLGDTITSSREAMED 77 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhh--hhhhH-------HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHH
Confidence 46788899999999999999999876221100 00111 11135566666766665322 2222
Q ss_pred H---------HhHhcCCC---Cch------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 157 C---------SLVLGEDE---NNV------------------------KALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 157 ~---------~~al~l~p---~~~------------------------~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
+ +..++.-| ++. ..-..+..++++.|.|.+|+....-.+.
T Consensus 78 ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 78 FTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred hcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2 22222222 210 1123467788999999999988876665
No 450
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=50.43 E-value=49 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=16.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 174 RGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 174 ~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
+|..+...|++++|..+|-+|+...|+-
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 5566666666666666666666666653
No 451
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.31 E-value=36 Score=27.02 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=40.3
Q ss_pred HHHHHHHHHhHhcCCCCc------hH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 150 YEEAIGQCSLVLGEDENN------VK--ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 150 ~~~A~~~~~~al~l~p~~------~~--a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
.+-|+..++..-+-.|.. .+ .--..-.+++..|.|++|.+.+++... +|++...+..|..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 455666666554433321 01 111235678899999999999999999 88877667666655
No 452
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=49.83 E-value=2.2e+02 Score=26.77 Aligned_cols=71 Identities=8% Similarity=0.052 Sum_probs=55.8
Q ss_pred HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531 158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230 (266)
Q Consensus 158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~ 230 (266)
++-++.+|.+..+|+.+-.-+..+ -+++..+.|++.+...|..+.++.....-.-+.+..+ .-.++|.+.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe-~VEkLF~RCL 80 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFE-SVEKLFSRCL 80 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHH-HHHHHHHHHH
Confidence 677899999999999998877666 9999999999999999999988877665544444443 4444466655
No 453
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=49.18 E-value=78 Score=22.67 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531 71 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM 113 (266)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~ 113 (266)
....++..-...+..+...|..++..|+.+.|--.|.+.+.+.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999999999999998876
No 454
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.95 E-value=85 Score=23.54 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccc
Q 024531 74 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD 116 (266)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~ 116 (266)
++.++.....-.-.++|..++.+|+++++..++-.||..+|..
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 4566666667777899999999999999999999999999874
No 455
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.52 E-value=98 Score=31.47 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHH
Q 024531 78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMA 109 (266)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~a 109 (266)
++......+-+.|....+.|...+|++.|-+|
T Consensus 1099 e~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1099 ERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 33444555667788889999999999988775
No 456
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.41 E-value=81 Score=31.14 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=42.8
Q ss_pred hHHHHHHHhhCHHHHHHHHHhHhcCCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024531 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKA 194 (266)
Q Consensus 139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~a 194 (266)
+.-.+|+..|+|++|+.+++.. |+-. .++...|..+++.++|..|.+.|-+.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4568899999999999998765 4433 46778899999999999999998766
No 457
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=46.92 E-value=84 Score=30.43 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=38.5
Q ss_pred hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL 210 (266)
Q Consensus 134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~ 210 (266)
..+..|+|..+..+..|+.|.++|...-.. -+...|++.+.+|++-.. +...-|++.+.+..++.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~ 860 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEV----LARTLPEDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHH
Confidence 336777888888888888888877665322 244566666666655333 33334665544444443
No 458
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.66 E-value=2.1e+02 Score=31.76 Aligned_cols=109 Identities=16% Similarity=0.041 Sum_probs=72.9
Q ss_pred HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
.++.+.+.|...-..|+++.|-...-+|.+..+.. ++..+|......|+-..|+..++..+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~-------------------i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRLPE-------------------IVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccch-------------------HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34555556666666788888888777777765332 68889999999999999999999999
Q ss_pred cCC-CC----------c------hHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531 162 GED-EN----------N------VKALFRRGKARAELGQT--DAAREDFLKAGKFAPEDKSIARELR 209 (266)
Q Consensus 162 ~l~-p~----------~------~~a~~~~g~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~l~ 209 (266)
..+ |+ . .++.+..+.=....+++ .+-++.|..+.++.|....-...++
T Consensus 1730 ~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1730 SKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 553 22 1 12333333333333443 5667889999999996554444454
No 459
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=45.58 E-value=43 Score=17.15 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 173 RRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 173 ~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
.+-.+|.+.|++++|.+.|.+..+
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556666666666666665543
No 460
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.50 E-value=80 Score=19.96 Aligned_cols=59 Identities=17% Similarity=0.010 Sum_probs=37.6
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHH
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ 156 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~ 156 (266)
...|..+|..|+|=+|-+.+...-...+.... .-+..-+....|..+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~-----------~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPER-----------DFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHH-----------HHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchH-----------HHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 35688899999999999999988765443211 111122344456666777888887654
No 461
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.78 E-value=2.1e+02 Score=26.68 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=54.4
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531 87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~ 166 (266)
...+..+.-.|+-+.|+..+..++. +. .+.+..-++..+|.++.-+.+|..|-.++....... +
T Consensus 271 l~~ar~l~~~g~~eaa~~~~~~~v~--~~-------------~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-d 334 (546)
T KOG3783|consen 271 LMEARILSIKGNSEAAIDMESLSIP--IR-------------MKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-D 334 (546)
T ss_pred HHHHHHHHHcccHHHHHHHHHhccc--HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-h
Confidence 3456666667777777888887777 21 134455578999999999999999999998887765 4
Q ss_pred chHHHH--HHHHHHH
Q 024531 167 NVKALF--RRGKARA 179 (266)
Q Consensus 167 ~~~a~~--~~g~~~~ 179 (266)
...++| ..|.|++
T Consensus 335 WS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 335 WSHAFYTYFAGCCLL 349 (546)
T ss_pred hhHHHHHHHHHHHHh
Confidence 555555 3445553
No 462
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.28 E-value=1.4e+02 Score=21.83 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=52.5
Q ss_pred ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc--CCCCchHHHHHH
Q 024531 97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG--EDENNVKALFRR 174 (266)
Q Consensus 97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~~ 174 (266)
+.-..-...+.+++....++..+.... =|..+-.-|...-+ .+...|..... +--..+..|-..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~------------RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~w 105 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDE------------RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEW 105 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-H------------HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCH------------HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHH
Confidence 444445667777777776544331100 13334444444433 66666666553 333566777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 024531 175 GKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 175 g~~~~~~g~~~~A~~~~~~al 195 (266)
|..+...|++++|.+.|++++
T Consensus 106 A~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 106 AEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhhC
Confidence 999999999999999998875
No 463
>PF13041 PPR_2: PPR repeat family
Probab=41.01 E-value=74 Score=18.53 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
.|..+-.++.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344445555566666666666655554
No 464
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.95 E-value=1.1e+02 Score=28.52 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=16.8
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
...+|..|...++|.+|+..|.+|.
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~ 449 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAY 449 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777666654
No 465
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=39.56 E-value=3.4e+02 Score=25.71 Aligned_cols=30 Identities=3% Similarity=-0.090 Sum_probs=20.4
Q ss_pred HHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
++.-...-...|++....-.|.+++--+..
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~ 329 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCAL 329 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhh
Confidence 333344445678899999999998876543
No 466
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.89 E-value=81 Score=24.78 Aligned_cols=30 Identities=20% Similarity=-0.109 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDE 165 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p 165 (266)
++.+++.++...|+.++|.....++..+.|
T Consensus 146 ~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 146 VYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 588999999999999999999999999999
No 467
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.24 E-value=1.2e+02 Score=21.46 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~ 209 (266)
+-.+-.+|..|...|+-+.|.+.|+.--.+-|+.......|.
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHH
Confidence 456778999999999999999999998889998776665554
No 468
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=35.84 E-value=2.8e+02 Score=23.74 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=68.0
Q ss_pred HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531 84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE 163 (266)
Q Consensus 84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l 163 (266)
..+-+-++.++-..||..|+...+++++...++...+.+ .....+++..+..-=-+++..+++|.+++...-+-...
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~---~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~ 112 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEP---AGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV 112 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 444456677888899999999999999987543322111 11112333333333347888899999988765554432
Q ss_pred CCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531 164 DENN-VKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201 (266)
Q Consensus 164 ~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 201 (266)
-.+- ++.+-.--..|.+.++.....+. -.+.--+|+|
T Consensus 113 pEklPpkIleLCILLysKv~Ep~amlev-~~~WL~~p~N 150 (309)
T PF07163_consen 113 PEKLPPKILELCILLYSKVQEPAAMLEV-ASAWLQDPSN 150 (309)
T ss_pred cccCCHHHHHHHHHHHHHhcCHHHHHHH-HHHHHhCccc
Confidence 2111 34444444556677887655544 3344457776
No 469
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=35.12 E-value=1.3e+02 Score=26.55 Aligned_cols=98 Identities=12% Similarity=-0.030 Sum_probs=65.6
Q ss_pred HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC-----
Q 024531 89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE----- 163 (266)
Q Consensus 89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l----- 163 (266)
+...|+..++|.+|+..-...+.-...-.+ +.+.+.++..-+.+|..+.+..+|...+..|-..
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDD-----------K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY 202 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDD-----------KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY 202 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccc-----------ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc
Confidence 466788889999999887776653322111 2335556777788888888888888777666433
Q ss_pred CCCchHHHH--HHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 164 DENNVKALF--RRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 164 ~p~~~~a~~--~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
.|.-..+-. .-|..|..-.+|.-|..+|-.|++-
T Consensus 203 cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 203 CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred cCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 232223322 2366677778999999999988874
No 470
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.00 E-value=2.3e+02 Score=22.57 Aligned_cols=45 Identities=11% Similarity=0.044 Sum_probs=32.5
Q ss_pred hHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH
Q 024531 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 184 (266)
Q Consensus 139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 184 (266)
....++++.|.+++|.+.+++... +|++.+-.-.+..+-.....|
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 345778899999999999999999 888776644444444333333
No 471
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.56 E-value=56 Score=29.43 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=40.9
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-------KALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
+..+-..+.-+|+ .+| -.+.++++|... ..-|..|.+|..+++|.+|++.|-.+|..
T Consensus 238 L~GLlR~H~lLgD-hQa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 238 LLGLLRMHILLGD-HQA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred HHHHHHHHHHhhh-hHh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666888 445 445677777542 22378999999999999999999888753
No 472
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.07 E-value=89 Score=19.66 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531 168 VKALFRRGKARAELGQTDAAREDFLKAG 195 (266)
Q Consensus 168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al 195 (266)
..-+...-..+.++|++++|.+++....
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444445556667777777777666554
No 473
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=34.02 E-value=1.4e+02 Score=26.65 Aligned_cols=62 Identities=13% Similarity=-0.098 Sum_probs=47.3
Q ss_pred hHHHHHHHhhCHHHHHHHHHhHhcC-CCC--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531 139 NMAACLLKLKRYEEAIGQCSLVLGE-DEN--------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200 (266)
Q Consensus 139 n~a~~~~~~~~~~~A~~~~~~al~l-~p~--------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 200 (266)
.+-..|+++++.+-+...++.--.. -|+ ....+|.+|.+|+-..++.+|-..++.|+..-|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 3568899999988877655432221 122 2356899999999999999999999999998887
No 474
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.93 E-value=79 Score=29.12 Aligned_cols=44 Identities=20% Similarity=0.103 Sum_probs=20.8
Q ss_pred hHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC
Q 024531 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG 182 (266)
Q Consensus 139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 182 (266)
++|.--+..|+|..+.+..++++--+|+|..|....+.++.++|
T Consensus 457 ~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLg 500 (655)
T COG2015 457 ELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLG 500 (655)
T ss_pred HHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhh
Confidence 34444444444444444444444444444444444444444444
No 475
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=32.75 E-value=1.7e+02 Score=26.95 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196 (266)
Q Consensus 136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 196 (266)
.++.-...+...++-+.|+....+++...|. .++.++.+|.-..+-++-..+|.++..
T Consensus 304 vw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 304 VWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 3555556666677888888888888887775 667788888777777766666766553
No 476
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=32.37 E-value=2.3e+02 Score=21.65 Aligned_cols=73 Identities=21% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL 159 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~ 159 (266)
..........++..++.|+...|...+.-+-.-..-... ..+-. ......+.|..++..|++.+|...+..
T Consensus 72 ~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~-~lPL~--------~~~~av~~A~~ll~~~k~~eA~~aL~~ 142 (155)
T PF10938_consen 72 TPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTA-LLPLA--------QTPAAVKQAAALLDEGKYYEANAALKQ 142 (155)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEE-EEEHH--------HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeee-eCCHH--------hhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345677788999999999999999987765321110000 00000 111356889999999999999998888
Q ss_pred Hh
Q 024531 160 VL 161 (266)
Q Consensus 160 al 161 (266)
++
T Consensus 143 A~ 144 (155)
T PF10938_consen 143 AL 144 (155)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 477
>PF15469 Sec5: Exocyst complex component Sec5
Probab=32.22 E-value=1.6e+02 Score=22.94 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCC
Q 024531 179 AELGQTDAAREDFLKAGKFAP 199 (266)
Q Consensus 179 ~~~g~~~~A~~~~~~al~l~p 199 (266)
...|+|+.++.+|.++..+-.
T Consensus 97 i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHHH
Confidence 467888888888888887653
No 478
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=32.06 E-value=1.6e+02 Score=19.82 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531 182 GQTDAAREDFLKAGKFAPEDKSIARELRLL 211 (266)
Q Consensus 182 g~~~~A~~~~~~al~l~p~~~~~~~~l~~l 211 (266)
++..+++..-.+.++.+|+||.++..+...
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~ 50 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSK 50 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 444555555566667788888776655543
No 479
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=31.27 E-value=59 Score=33.70 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD 115 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~ 115 (266)
.......+..|+.+...|+|.+|++.|..|+.....
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~ 274 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS 274 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 345777788999999999999999999999987654
No 480
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.71 E-value=1.4e+02 Score=22.38 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024531 173 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE 207 (266)
Q Consensus 173 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 207 (266)
.+|..++.+|+++++..++-.|+.+-|.-...+.-
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~v 120 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQV 120 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 47888888899999999998898888876555433
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=30.33 E-value=4.6e+02 Score=26.02 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=9.5
Q ss_pred HHHHHhhCHHHHHHHHHhH
Q 024531 142 ACLLKLKRYEEAIGQCSLV 160 (266)
Q Consensus 142 ~~~~~~~~~~~A~~~~~~a 160 (266)
..|-+.|+|.+|.....+.
T Consensus 799 ~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHhccccHHHHHHHHHHh
Confidence 3444555555555544443
No 482
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=29.71 E-value=1e+02 Score=16.77 Aligned_cols=22 Identities=27% Similarity=0.219 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHH
Q 024531 183 QTDAAREDFLKAGKFAPEDKSI 204 (266)
Q Consensus 183 ~~~~A~~~~~~al~l~p~~~~~ 204 (266)
+++.|...|++.+...|+-...
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHH
Confidence 5678888888888888774433
No 483
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.33 E-value=1.8e+02 Score=25.43 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGE----DENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197 (266)
Q Consensus 133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 197 (266)
.+..++..|.-.+..|+|..|-.++=.-..+ ++++..+++..--+-.-+.+|+-|++++.+.-+.
T Consensus 128 ~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 128 RIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 484
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=29.04 E-value=1.8e+02 Score=19.28 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhh
Q 024531 73 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAY 112 (266)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 112 (266)
.....+..+.+..+.+-|..++..|++-.|+..+.-+-..
T Consensus 25 ~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~Gw 64 (75)
T PF04010_consen 25 YDAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGW 64 (75)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999999987766554
No 485
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.31 E-value=4.3e+02 Score=25.40 Aligned_cols=25 Identities=8% Similarity=-0.142 Sum_probs=15.9
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVL 161 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al 161 (266)
+..+|.+.+..+++..|.+++.++-
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhc
Confidence 4556666666666666666666654
No 486
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=28.15 E-value=19 Score=33.60 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHhhccHHHHHHHHHHHH--hhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531 80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAI--AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 157 (266)
Q Consensus 80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al--~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~ 157 (266)
..+...+..-+..+.+.|++..|...+...- .+.+.. ........|.+....|++..|+..+
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q----------------~~~~~Ll~A~lal~~~~~~~Al~~L 84 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ----------------QARYQLLRARLALAQGDPEQALSLL 84 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH----------------HHHHHHHHHHHHHhcCCHHHHHHHh
Confidence 3455666677888899999999998888655 222221 2224567788999999999999988
Q ss_pred Hh--HhcCCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531 158 SL--VLGEDENN-VKALFRRGKARAELGQTDAAREDFLKAGKFAP 199 (266)
Q Consensus 158 ~~--al~l~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 199 (266)
.. ...+.+.. ...+-.++.++...|++-+|...+-..-.+-+
T Consensus 85 ~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 85 NAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp ---------------------------------------------
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 74 12222222 23445679999999999888887655554433
No 487
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=27.48 E-value=1.4e+02 Score=25.95 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531 170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI 204 (266)
Q Consensus 170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 204 (266)
++|..|.-..+.|..-+|+..|+.|+++.|+-...
T Consensus 21 ~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~ 55 (366)
T KOG2997|consen 21 ALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESK 55 (366)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHH
Confidence 34444445556666777777777777776664433
No 488
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=26.56 E-value=44 Score=27.51 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=29.9
Q ss_pred HHhhhhhhhhHHHHHH---------HhhCHHHHHHHHHhHhcCCCC
Q 024531 130 LAVKNPCHLNMAACLL---------KLKRYEEAIGQCSLVLGEDEN 166 (266)
Q Consensus 130 ~~l~~~~~~n~a~~~~---------~~~~~~~A~~~~~~al~l~p~ 166 (266)
..+..++|-..|..++ ..++...|+.++++|+.++|.
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 4556677888888884 345788999999999999986
No 489
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.54 E-value=3.6e+02 Score=22.12 Aligned_cols=75 Identities=8% Similarity=0.053 Sum_probs=47.0
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc-hHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN-VKALFRRGKARA-ELGQTDAAREDFLKAGKFAPE--DKSIARELRLL 211 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~l 211 (266)
+..+|....+.++|++.+.+..+++..+|.- .+=..-++.+|- ..|....+...+.....-... +......+...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~y 82 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDY 82 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHH
Confidence 6678888889999999999999998887753 334444566663 346666666666555554443 24444444433
No 490
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=4.3e+02 Score=22.85 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc------CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531 130 LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG------EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198 (266)
Q Consensus 130 ~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~------l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 198 (266)
.-+...+-..+...+++.|.|.+|+...+..+. -.|+-...|..-+.+|....+..++...+-.|-.+.
T Consensus 121 ~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 121 KFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 344455667888999999999999998887762 245566788888999999999999988887776553
No 491
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.79 E-value=95 Score=27.44 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=46.8
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCC--------CchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDE--------NNVKALFRRGKARAELGQTDAAREDFLK 193 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 193 (266)
+...|+-++..++++.|...+..|..+.. ++..++|..|.+++.++++..++-.+-.
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 55678888999999999999999986633 3568899999999999999888766543
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.78 E-value=3.8e+02 Score=22.04 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 024531 171 LFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIARELRLLAE 213 (266)
Q Consensus 171 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l~~l~~ 213 (266)
+..+|.+..+.++|++++.+++++...+|+ +.+=+..|....+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayK 47 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYK 47 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 557889999999999999999999999886 4444555555443
No 493
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.77 E-value=95 Score=22.11 Aligned_cols=35 Identities=9% Similarity=-0.022 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHh
Q 024531 77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIA 111 (266)
Q Consensus 77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~ 111 (266)
+........+.+.+..|+.+|.+++|++.+.+...
T Consensus 33 e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 33 EEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44566677888999999999999999999998776
No 494
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=25.64 E-value=1.9e+02 Score=22.00 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.3
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHH
Q 024531 173 RRGKARAELG-QTDAAREDFLKAGKFAPEDKSIA 205 (266)
Q Consensus 173 ~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~ 205 (266)
.+|..+...| ++++|..+|-+|+..-|.-.+.+
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 4788888888 88899999999998888744443
No 495
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.45 E-value=3.4e+02 Score=25.81 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=40.7
Q ss_pred hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 024531 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192 (266)
Q Consensus 137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 192 (266)
....|..+-..+..+.|...|++.+..+|+ .+++..++-+.+.|-...|...++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 45 MLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 445566666677788888888888888877 677777888888888888877776
No 496
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=5.2e+02 Score=23.51 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccc
Q 024531 81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD 116 (266)
Q Consensus 81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~ 116 (266)
+.+..++-.|.+..-+++|..|.+++-+|+...|..
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 456666667777777777777777777777777653
No 497
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=25.23 E-value=2e+02 Score=25.80 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH
Q 024531 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 184 (266)
Q Consensus 150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 184 (266)
...|+.++++|.. .+.|..|.++|.+++.+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 5667777877765 35677888888888877765
No 498
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=23.94 E-value=2.8e+02 Score=22.00 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=17.2
Q ss_pred hhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVK 169 (266)
Q Consensus 138 ~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~ 169 (266)
..++..|.+.|-|.+|+..+-+.....|+|..
T Consensus 135 ~e~~~~YAe~GiWyDaL~~La~lr~~~p~d~~ 166 (189)
T PF06051_consen 135 LERAALYAENGIWYDALATLAELRRSQPNDPQ 166 (189)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHcCCCChH
Confidence 44555555555555555555555555555443
No 499
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=23.51 E-value=1.5e+02 Score=26.34 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHH
Q 024531 168 VKALFRRGKARAEL---------GQTDAAREDFLKAGKFAPEDKS 203 (266)
Q Consensus 168 ~~a~~~~g~~~~~~---------g~~~~A~~~~~~al~l~p~~~~ 203 (266)
..|+|.+|.+|.++ ++...++..|+.+...-..|+.
T Consensus 300 l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 300 LYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 45677777777655 5667778888887776555554
No 500
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=23.32 E-value=6.5e+02 Score=23.90 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=51.7
Q ss_pred HHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHH---HHHHHHhhCCCC---HHHHHHHHHHHH
Q 024531 140 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE---DFLKAGKFAPED---KSIARELRLLAE 213 (266)
Q Consensus 140 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~---~~~~al~l~p~~---~~~~~~l~~l~~ 213 (266)
-|..--..|++..|...+++...--|+...+-++.......+|+.+.+.. .+.....-..++ ....-...++..
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 34444446677777777777776667777777777777777777776663 222222111111 111222333333
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCc
Q 024531 214 HEKAVYKKQKEIYKGIFGPRPEPK 237 (266)
Q Consensus 214 ~~~~~~~~~~~~~~k~~~~~~~~~ 237 (266)
...+..+..+.+..++.+..+.++
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccH
Confidence 444444455555555555554444
Done!