BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024533
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 200 bits (509), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 131/186 (70%), Gaps = 6/186 (3%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C C +Y+R
Sbjct: 91 PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150
Query: 62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
D + T+G+K T R C+ K C L+DT+LDWED+LP ++ A+E R AD+
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210
Query: 116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
+ LGTSLQI P+ NLPL + R GG++VIVNLQ T D+ A L +H VD+V+ +M+HL
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 270
Query: 176 LWIPPY 181
L IP +
Sbjct: 271 LEIPAW 276
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 6/186 (3%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C C +Y+R
Sbjct: 91 PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150
Query: 62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
D + T+G+K T R C+ K C L+DT+LDWED+LP ++ A+E R AD+
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210
Query: 116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
+ LGTSLQI P+ NLPL + R GG++VIVNLQ T D+ A L +H VD+V+ +M HL
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLG 270
Query: 176 LWIPPY 181
L IP +
Sbjct: 271 LEIPAW 276
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P++ H+ L +LE+ G+++ VI+QN+D LH R+G +K+ ELHGN C C +Y
Sbjct: 76 PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELHGNVEEYYCVRCEKKYTV 133
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
+ I+ + P C D C S ++ ++ + + LP + A A +++ LG+S
Sbjct: 134 EDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSS 190
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASL 157
L + PA LPL ++R GGK+VIVNL +TP D A+L
Sbjct: 191 LVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATL 226
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 5/172 (2%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P++ H+ L +LE+ G+++ VI+QN+D LH R+G +K+ EL+GN C C +Y
Sbjct: 76 PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELYGNVEEYYCVRCEKKYTV 133
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
+ I+ + P C D C S ++ ++ + + LP + A A +++ LG+S
Sbjct: 134 EDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSS 190
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRH 173
L + PA LPL ++R GGK+VIVNL +TP D A+L + V + VM
Sbjct: 191 LVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE 242
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P++ H+ L +LE+ G+++ VI+QN+D LH R+G +K+ EL GN C C +Y
Sbjct: 76 PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELAGNVEEYYCVRCEKKYTV 133
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
+ I+ + P C D C S ++ ++ + + LP + A A +++ LG+S
Sbjct: 134 EDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSS 190
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRH 173
L + PA LPL ++R GGK+VIVNL +TP D A+L + V + VM
Sbjct: 191 LVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE 242
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C SC
Sbjct: 87 PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 140
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV++ GTS
Sbjct: 141 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 198
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 199 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 251
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C SC
Sbjct: 76 PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C SC
Sbjct: 76 PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C SC
Sbjct: 76 PNKAHQAFAELERLGVLKCLITQNVDGLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
FE+E+ +C KCGS L+ V+ + LPP ++ A ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ H A ELE+ G+LK +I+QNVD LH R+G + LHG+ C SC
Sbjct: 76 PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
FE+E+ +C KCGS L+ V+ + LPP ++ A ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ + A ELE+ G+LK +I+QNVD LH R+G + LHG+ C SC
Sbjct: 76 PNKANQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62 DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV++ GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P+ H A+ ELE+ GI+K VI+QN+D LH R+G R + ELHG+ + C C Y
Sbjct: 78 PNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELHGSMDKLDCLDCHETYDW 135
Query: 62 DFEIETIGMKKTPRRCSDVKCGS-RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
+E + P RC KCGS +K V+ + + LP + A E + D + +G+
Sbjct: 136 SEFVEDFNKGEIP-RCR--KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGS 192
Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKD 152
SL + PA LP + + G K++IVN + T D
Sbjct: 193 SLVVYPAAELPYIAKKAGAKMIIVNAEPTMAD 224
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 6 HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEI 65
H+AL LE G LK V++QNVD LH SG K+ LHGN F +C +C + ++
Sbjct: 88 HVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISLHGNVFEAVCCTCN----KIVKL 141
Query: 66 ETIGMKKT-------PRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
I ++KT P C CG K ++ + + + + AEE D++L +
Sbjct: 142 NKIXLQKTSHFXHQLPPECP---CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVI 198
Query: 119 GTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS 156
GTS ++ A NL + + KIV +N+ +T K S
Sbjct: 199 GTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKXS 236
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 6 HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEI 65
H+AL LE G LK V++QNVD LH SG K+ LHGN F +C +C + ++
Sbjct: 113 HVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISLHGNVFEAVCCTCN----KIVKL 166
Query: 66 ETIGMKKTPRRCS----DVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
I ++KT + CG K ++ + + + + AEE D++L +GTS
Sbjct: 167 NKIMLQKTSHFMHQLPPECPCGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTS 226
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS 156
++ A NL + + KIV +N+ +T K S
Sbjct: 227 STVSTATNLCHFACKKKKKIVEINISKTYITNKMS 261
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2 PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
P+ H A+ E E K G VI+QN+D LH ++G + L E+HG+ F+ C SCGV
Sbjct: 83 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 140
Query: 58 --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
E + + K P RC + CG L+ V+ + + L P
Sbjct: 141 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 200
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
+ + D+ L +GTS + PA + G + N + TP +
Sbjct: 201 LEEVDRELAHCDLCLVVGTSSVVYPAAXFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 260
Query: 162 PVDKVI 167
P +
Sbjct: 261 PCGTTL 266
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2 PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
P+ H A+ E E K G VI+QN+D LH ++G + L E+HG+ F+ C SCGV
Sbjct: 87 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 144
Query: 58 --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
E + + K P RC + CG L+ V+ + + L P
Sbjct: 145 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 204
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
+ + D+ L +GTS + PA + G + N + TP +
Sbjct: 205 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 264
Query: 162 PVDKVI 167
P +
Sbjct: 265 PCGTTL 270
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2 PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
P+ H A+ E E K G VI+QN+D LH ++G + L E+HG+ F+ C SCGV
Sbjct: 85 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 142
Query: 58 --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
E + + K P RC + CG L+ V+ + + L P
Sbjct: 143 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 202
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
+ + D+ L +GTS + PA + G + N + TP +
Sbjct: 203 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 262
Query: 162 PVDKVI 167
P +
Sbjct: 263 PCGTTL 268
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2 PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
P+ H A+ E E K G VI+QN+D LH ++G + L E+HG+ F+ C SCGV
Sbjct: 79 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 136
Query: 58 --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
E + + K P RC + CG L+ V+ + + L P
Sbjct: 137 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 196
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
+ + D+ L +GTS + PA + G + N + TP +
Sbjct: 197 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 256
Query: 162 PVDKVI 167
P +
Sbjct: 257 PCGTTL 262
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2 PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
P+ H A+ E E K G VI+QN+D LH ++G + L E+HG+ F+ C SCGV
Sbjct: 83 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 140
Query: 58 --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
E + + K P RC + CG L+ V+ + + L P
Sbjct: 141 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 200
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
+ + D+ L +GTS + PA + G + N + TP +
Sbjct: 201 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 260
Query: 162 PVDKVI 167
P +
Sbjct: 261 PCGTTL 266
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREIC--PSCGVEY 59
P+I H + L+ G+L +QN+D+L +G+ +E L E HG + C SC EY
Sbjct: 112 PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEY 171
Query: 60 MRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLG 119
+ E I + TP +C D C S +K ++ + ++LP + + + D++L +G
Sbjct: 172 PLSWMKEKIFSEVTP-KCED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMG 228
Query: 120 TSLQITPACNL 130
TSLQ+ P +L
Sbjct: 229 TSLQVQPFASL 239
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREIC--PSCGVEY 59
P+I H + L+ G+L +QN+D+L +G+ +E L E HG + C SC EY
Sbjct: 112 PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEY 171
Query: 60 MRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLG 119
+ E I + TP +C D C S +K ++ + ++LP + + + D++L +G
Sbjct: 172 PLSWMKEKIFSEVTP-KCED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMG 228
Query: 120 TSLQITPACNL 130
TSLQ+ P +L
Sbjct: 229 TSLQVQPFASL 239
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P++TH L L G+L + +QN+D L SGIP KL E HG C C R
Sbjct: 85 PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC----QR 140
Query: 62 DFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
F E I M RC C +K ++ + + LP + + MAD++L L
Sbjct: 141 PFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHV-VDFPMADLLLIL 197
Query: 119 GTSLQITPACNL 130
GTSL++ P +L
Sbjct: 198 GTSLEVEPFASL 209
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P++TH L L G+L + +QN+D L SGIP KL E HG C C R
Sbjct: 91 PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC----QR 146
Query: 62 DFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
F E I M RC C +K ++ + + LP + + MAD++L L
Sbjct: 147 PFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHV-VDFPMADLLLIL 203
Query: 119 GTSLQITPACNL 130
GTSL++ P +L
Sbjct: 204 GTSLEVEPFASL 215
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
P++TH L L G+L + +QN+D L SGIP KL E HG C C R
Sbjct: 92 PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC----QR 147
Query: 62 DFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
F E I M RC C +K ++ + + LP + + MAD++L L
Sbjct: 148 PFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHV-VDFPMADLLLIL 204
Query: 119 GTSLQITPACNL 130
GTSL++ P +L
Sbjct: 205 GTSLEVEPFASL 216
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 2 PSITHMALVELEKA-GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCG--VE 58
P+ H+AL +L+ A G +++QN+D+LH R+G + +HG + C G ++
Sbjct: 67 PNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG--NTNVIHMHGELLKVRCSQSGQVLD 124
Query: 59 YMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
+ D E +C + + L+ V+ W +P + M+ MAD+ + +
Sbjct: 125 WTGDVTPED--------KCHCCQFPAPLRPHVV-WFGEMP-LGMDEIYMALSMADIFIAI 174
Query: 119 GTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 167
GTS + PA ++ G V +NL+ + + + + P +V+
Sbjct: 175 GTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVV 223
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C CG Y
Sbjct: 107 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 166
Query: 62 DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
+ K +C DV CG +K ++ D D+ +N +E E +
Sbjct: 167 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 224
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
+V+ +GTSL + P +LP + R K V+ NL +T D KA+ L+VH
Sbjct: 225 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 282
Query: 162 PVDKVIAGVMRHLN 175
D+ ++ L
Sbjct: 283 YSDEFAEQLVEELG 296
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C CG Y
Sbjct: 97 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 156
Query: 62 DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
+ K +C DV CG +K ++ D D+ +N +E E +
Sbjct: 157 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 214
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
+V+ +GTSL + P +LP + R K V+ NL +T D KA+ L+VH
Sbjct: 215 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 272
Query: 162 PVDKVIAGVMRHLNLWIPPYVRV 184
D+ ++ L W + ++
Sbjct: 273 YSDEFAEQLVEELG-WQEDFEKI 294
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C CG Y
Sbjct: 96 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 155
Query: 62 DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
+ K +C DV CG +K ++ D D+ +N +E E +
Sbjct: 156 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 213
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
+V+ +GTSL + P +LP + R K V+ NL +T D KA+ L+VH
Sbjct: 214 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 271
Query: 162 PVDKVIAGVMRHLN 175
D+ ++ L
Sbjct: 272 YSDEFAEQLVEELG 285
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C CG Y
Sbjct: 89 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 148
Query: 62 DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
+ K +C DV CG +K ++ D D+ +N +E E +
Sbjct: 149 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 206
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
+V+ +GTSL + P +LP + R K V+ NL +T D KA+ L+VH
Sbjct: 207 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 264
Query: 162 PVDKVIAGVMRHLN 175
D+ ++ L
Sbjct: 265 YSDEFAEQLVEELG 278
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
PS H L + +LK V +QN+D+L ++G+ + + E HG+ C CG Y
Sbjct: 99 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 158
Query: 62 DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
+ K +C DV CG +K ++ D D+ +N +E E +
Sbjct: 159 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 216
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
+V+ +GTSL + P +LP + R K V+ NL +T D KA+ L+VH
Sbjct: 217 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 274
Query: 162 PVDKVIAGVMRHLN 175
D+ ++ L
Sbjct: 275 YSDEFAEQLVEELG 288
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 24/194 (12%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
PS H L + +LK V +QN D+L ++G+ + + E HG+ C CG Y
Sbjct: 107 PSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 166
Query: 62 DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
+ K +C DV CG +K ++ D D+ +N +E E +
Sbjct: 167 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 224
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
+V+ +GTSL + P +LP + R K V+ NL +T D KA+ L+VH
Sbjct: 225 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 282
Query: 162 PVDKVIAGVMRHLN 175
D+ ++ L
Sbjct: 283 YSDEFAEQLVEELG 296
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 32/153 (20%)
Query: 6 HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHG-------------------- 45
H + L+ G L +QN+D+L +GI +KL + HG
Sbjct: 118 HSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIF 177
Query: 46 NSFREI----CPSCGV---EYMRDFEIETIGMKKTPRRCSD-----VKCGSRLKDTVLDW 93
N R + CP C EY + +G+ + S+ + LK + +
Sbjct: 178 NKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSXSERPPYILNSYGVLKPDITFF 237
Query: 94 EDALPPVEMNPAEENCRMADVVLCLGTSLQITP 126
+ALP E+ D+++C+GTSL++ P
Sbjct: 238 GEALPNKFHKSIREDILECDLLICIGTSLKVAP 270
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 32/157 (20%)
Query: 6 HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHG-------------------- 45
H + L+ G L +QN+D+L +GI +KL + HG
Sbjct: 256 HSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIF 315
Query: 46 NSFREI----CPSCGV---EYMRDFEIETIGMKKTPRRCSD-----VKCGSRLKDTVLDW 93
N R + CP C EY + +G+ + S+ + LK + +
Sbjct: 316 NKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFF 375
Query: 94 EDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNL 130
+ALP E+ D+++C+GTSL++ P +
Sbjct: 376 GEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEI 412
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
PS+ H + +K G L +QN+D+L +GI +++ + HG+ C C +Y
Sbjct: 86 PSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGI--QRIIQCHGSFATASCLIC--KYKV 141
Query: 62 DFEI--ETIGMKKTPR--RCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLC 117
D E I + PR RC + + +K ++ + + LP + + D+++
Sbjct: 142 DCEAVRGDIFNQVVPRCPRCPADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIV 201
Query: 118 LGTSLQITPACNLP 131
+G+SL++ P +P
Sbjct: 202 IGSSLKVRPVALIP 215
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 80 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQ 123
K G L++ +L EDAL P NP EE CR CLG SL+
Sbjct: 293 AKLGISLEEMLLVTEDALHPEPYNP-EEICR------CLGISLE 329
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The
Active Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The
Active Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 2 PSITHMALVELEKAGILKF--VISQNVDSLHLRSGIPREK----LAELHGNSFREI 51
P T+ ALVE+ KAG + F V++ N+D G+P+E + +H N F +
Sbjct: 45 PMTTYKALVEMHKAGQVSFKHVVTFNMDEY---VGLPKEHPESYYSFMHRNFFDHV 97
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 2 PSITHMALVELEKAGILKF--VISQNVDSLHLRSGIPREK----LAELHGNSFREI 51
P T+ ALVE+ KAG + F V++ N+D G+P+E + +H N F +
Sbjct: 45 PMTTYKALVEMHKAGQVSFKHVVTFNMDEY---VGLPKEHPESYYSFMHRNFFDHV 97
>pdb|3PYO|U Chain U, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s
Ribosome.
pdb|3PYR|U Chain U, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|U Chain U, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|U Chain U, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 100
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 38 EKLAELHGNSFREICPSCG 56
EK A LH + R ICP+CG
Sbjct: 61 EKEAPLHASKVRPICPACG 79
>pdb|3FIN|Y Chain Y, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 101
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 38 EKLAELHGNSFREICPSCG 56
EK A LH + R ICP+CG
Sbjct: 61 EKEAPLHASKVRPICPACG 79
>pdb|3TVE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 102
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 38 EKLAELHGNSFREICPSCG 56
EK A LH + R ICP+CG
Sbjct: 61 EKEAPLHASKVRPICPACG 79
>pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of
4). This File Contains The 50s Subunit From Molecule I.
pdb|2J03|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of
4). This File Contains The 50s Subunit From Molecule
Ii.
pdb|2HGJ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome Showing How The 16s 3'-End Mimicks Mrna E And
P Codons. This Entry 2hgj Contains 50s Ribosomal
Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb
Entry 2hgi.
pdb|2HGQ|X Chain X, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome With Translocated And Rotated Shine-Dalgarno
Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
2hgp.
pdb|2HGU|X Chain X, 70s T.Th. Ribosome Functional Complex With Mrna And E-
And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|S Chain S, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|Y Chain Y, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|S Chain S, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|Y Chain Y, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|Y Chain Y, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|Y Chain Y, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|Y Chain Y, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|Y Chain Y, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|2WH4|Y Chain Y, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|3HUX|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|Y Chain Y, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of
4).
pdb|2WRL|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|Y Chain Y, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|Y Chain Y, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule I
pdb|3KNK|Y Chain Y, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|Y Chain Y, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|U Chain U, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule
B. The 30s Subunit Can Be Found In Pdb Entry 3i9b.
Molecule A In The S Asymmetric Unit Is Deposited As
3i9d (30s) And 3i9e (50s)
pdb|3I9E|U Chain U, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule
A. The 30s Subunit Can Be Found In Pdb Entry 3i9d.
Molecule B In The S Asymmetric Unit Is Deposited As
3i9b (30s) And 3i9c (50s)
pdb|2X9S|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHK|Y Chain Y, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHZ|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|Y Chain Y, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The
70s Ribosome With A Gtp Analog
pdb|2XTG|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|Y Chain Y, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y13|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|Y Chain Y, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Cognate Codon On The 70s Ribosome.
pdb|2Y17|Y Chain Y, Ef-Tu Complex 3
pdb|2Y19|Y Chain Y, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|3ZVP|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release
Factor 3
pdb|3UXQ|Y Chain Y, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|Y Chain Y, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UYG|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UZ1|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin
pdb|3UZ2|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin.
pdb|3UZ8|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex
pdb|3UZH|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex.
pdb|3UZK|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex With Paromomycin
pdb|3UZN|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-cognate Trna-tyr Complex With Paromomycin
pdb|4ABS|Y Chain Y, Complex Of Smpb, A Tmrna Fragment And
Ef-Tu-Gdp-Kirromycin With The 70s Ribosome
pdb|4DHA|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|Y Chain Y, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|Y Chain Y, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|Y Chain Y, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|Y Chain Y, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|Y Chain Y, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 1st Ribosome In The Asu
pdb|3V2F|Y Chain Y, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 2nd Ribosome In The Asu
pdb|4G5L|U Chain U, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|U Chain U, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|U Chain U, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|U Chain U, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 110
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 38 EKLAELHGNSFREICPSCG 56
EK A LH + R ICP+CG
Sbjct: 62 EKEAPLHASKVRPICPACG 80
>pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3ms0. Molecule A In The Same Asymmetric Unit Is
Deposited As 3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|U Chain U, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3mr8. Molecule B In The Same Asymmetric Unit Is
Deposited As 3mrz (50s) And 3ms0 (30s)
Length = 109
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 38 EKLAELHGNSFREICPSCG 56
EK A LH + R ICP+CG
Sbjct: 61 EKEAPLHASKVRPICPACG 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,529,295
Number of Sequences: 62578
Number of extensions: 292625
Number of successful extensions: 618
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 52
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)