Query 024533
Match_columns 266
No_of_seqs 233 out of 1237
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905 Class IV sirtuins (SIR 100.0 5.5E-50 1.2E-54 360.9 10.0 243 1-255 100-349 (353)
2 PRK14138 NAD-dependent deacety 100.0 2.7E-48 5.7E-53 349.2 18.1 171 1-176 73-243 (244)
3 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 2.7E-48 5.8E-53 341.1 16.4 160 1-162 47-206 (206)
4 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 4.2E-48 9.1E-53 346.1 16.2 166 1-170 68-235 (235)
5 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 5.4E-48 1.2E-52 350.1 15.9 163 1-167 72-260 (260)
6 PTZ00409 Sir2 (Silent Informat 100.0 2.7E-46 5.9E-51 340.6 17.3 168 1-174 91-262 (271)
7 PRK05333 NAD-dependent deacety 100.0 2.5E-45 5.4E-50 336.6 18.3 172 1-176 82-279 (285)
8 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 1.3E-45 2.9E-50 327.3 15.9 156 1-162 67-222 (222)
9 COG0846 SIR2 NAD-dependent pro 100.0 1.1E-45 2.4E-50 332.3 13.5 170 1-175 76-246 (250)
10 PRK00481 NAD-dependent deacety 100.0 5.7E-45 1.2E-49 326.8 17.2 165 1-174 76-240 (242)
11 PTZ00408 NAD-dependent deacety 100.0 2.3E-44 4.9E-49 323.3 17.0 162 1-174 69-235 (242)
12 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 2.1E-44 4.6E-49 319.3 16.0 162 1-171 63-224 (224)
13 cd01407 SIR2-fam SIR2 family o 100.0 7.6E-44 1.6E-48 314.9 16.5 156 1-162 63-218 (218)
14 PTZ00410 NAD-dependent SIR2; P 100.0 9.1E-44 2E-48 332.3 16.2 171 1-176 99-324 (349)
15 cd01411 SIR2H SIR2H: Uncharact 100.0 5.4E-43 1.2E-47 311.2 13.4 152 1-166 73-224 (225)
16 cd00296 SIR2 SIR2 superfamily 100.0 2.4E-39 5.1E-44 285.1 15.6 156 1-162 65-222 (222)
17 KOG2683 Sirtuin 4 and related 100.0 2.8E-39 6E-44 284.0 11.5 165 1-169 111-304 (305)
18 PF02146 SIR2: Sir2 family; I 100.0 1.8E-39 3.9E-44 278.3 10.0 120 1-126 59-178 (178)
19 KOG2682 NAD-dependent histone 100.0 1.4E-38 2.9E-43 280.0 6.5 173 1-177 104-281 (314)
20 KOG2684 Sirtuin 5 and related 100.0 1.5E-35 3.4E-40 277.5 13.0 180 1-185 155-352 (412)
21 PF00205 TPP_enzyme_M: Thiamin 96.8 0.0043 9.3E-08 50.4 6.8 67 103-170 69-137 (137)
22 cd01406 SIR2-like Sir2-like: P 96.7 0.0016 3.4E-08 58.2 4.1 33 1-33 79-112 (242)
23 PRK07979 acetolactate synthase 95.1 0.049 1.1E-06 54.7 6.7 70 104-175 265-336 (574)
24 PRK08322 acetolactate synthase 95.1 0.058 1.3E-06 53.7 7.0 68 105-175 256-325 (547)
25 PRK07524 hypothetical protein; 95.1 0.038 8.3E-07 54.9 5.6 74 103-176 255-330 (535)
26 PRK08979 acetolactate synthase 95.0 0.051 1.1E-06 54.6 6.6 71 103-175 264-336 (572)
27 PRK07418 acetolactate synthase 95.0 0.053 1.1E-06 55.0 6.6 70 104-175 283-354 (616)
28 CHL00099 ilvB acetohydroxyacid 95.0 0.072 1.6E-06 53.7 7.5 69 105-175 277-347 (585)
29 PRK06882 acetolactate synthase 94.9 0.06 1.3E-06 54.0 6.7 70 104-175 265-336 (574)
30 PF13289 SIR2_2: SIR2-like dom 94.9 0.081 1.8E-06 42.4 6.1 62 102-177 76-141 (143)
31 TIGR01504 glyox_carbo_lig glyo 94.8 0.061 1.3E-06 54.3 6.4 69 104-174 262-332 (588)
32 PRK08527 acetolactate synthase 94.8 0.069 1.5E-06 53.5 6.7 69 105-175 263-333 (563)
33 PRK07789 acetolactate synthase 94.8 0.076 1.6E-06 53.8 7.0 70 104-175 290-361 (612)
34 PRK09107 acetolactate synthase 94.7 0.073 1.6E-06 53.9 6.7 70 104-175 273-344 (595)
35 PRK06466 acetolactate synthase 94.7 0.073 1.6E-06 53.5 6.6 70 104-175 265-336 (574)
36 PRK05858 hypothetical protein; 94.7 0.11 2.3E-06 51.9 7.6 79 93-175 244-324 (542)
37 PRK06154 hypothetical protein; 94.6 0.087 1.9E-06 53.0 6.8 68 104-175 273-342 (565)
38 PRK06456 acetolactate synthase 94.6 0.083 1.8E-06 53.0 6.6 70 105-175 267-338 (572)
39 PRK06725 acetolactate synthase 94.5 0.09 2E-06 52.9 6.7 69 105-175 274-344 (570)
40 PLN02470 acetolactate synthase 94.5 0.096 2.1E-06 52.8 6.9 70 104-175 272-343 (585)
41 TIGR02418 acolac_catab acetola 94.4 0.1 2.3E-06 51.8 7.0 69 104-175 255-325 (539)
42 TIGR03254 oxalate_oxc oxalyl-C 94.3 0.13 2.9E-06 51.3 7.5 69 106-175 260-330 (554)
43 PRK08327 acetolactate synthase 94.3 0.11 2.4E-06 52.1 6.8 67 105-175 273-344 (569)
44 PRK08978 acetolactate synthase 94.3 0.098 2.1E-06 52.1 6.4 69 104-174 255-325 (548)
45 PRK11269 glyoxylate carboligas 94.3 0.11 2.3E-06 52.5 6.7 69 105-175 264-334 (591)
46 PRK08199 thiamine pyrophosphat 94.2 0.11 2.4E-06 52.0 6.4 72 104-175 263-337 (557)
47 PRK08155 acetolactate synthase 94.1 0.13 2.9E-06 51.4 7.0 69 105-175 271-341 (564)
48 TIGR00118 acolac_lg acetolacta 94.1 0.11 2.4E-06 51.8 6.4 70 104-175 260-331 (558)
49 PRK07282 acetolactate synthase 94.0 0.12 2.7E-06 51.8 6.6 70 104-175 269-340 (566)
50 PRK08266 hypothetical protein; 93.9 0.087 1.9E-06 52.4 5.3 69 104-175 256-325 (542)
51 PRK09259 putative oxalyl-CoA d 93.9 0.17 3.7E-06 50.8 7.3 69 106-175 267-337 (569)
52 PRK08611 pyruvate oxidase; Pro 93.9 0.14 3.1E-06 51.5 6.7 65 104-175 260-326 (576)
53 PRK08273 thiamine pyrophosphat 93.8 0.16 3.5E-06 51.3 7.0 67 104-175 265-333 (597)
54 PRK06276 acetolactate synthase 93.8 0.16 3.5E-06 51.2 6.9 70 104-175 262-333 (586)
55 PRK06048 acetolactate synthase 93.8 0.15 3.2E-06 51.1 6.6 70 104-175 266-337 (561)
56 PRK06112 acetolactate synthase 93.8 0.15 3.2E-06 51.2 6.6 70 104-175 277-347 (578)
57 PRK06965 acetolactate synthase 93.8 0.15 3.2E-06 51.5 6.6 71 104-175 280-352 (587)
58 PRK07525 sulfoacetaldehyde ace 93.8 0.13 2.9E-06 51.8 6.2 72 104-175 259-333 (588)
59 COG0028 IlvB Thiamine pyrophos 93.8 0.14 2.9E-06 51.7 6.2 70 104-176 259-330 (550)
60 TIGR03457 sulphoacet_xsc sulfo 93.6 0.15 3.3E-06 51.2 6.3 70 104-175 255-329 (579)
61 PRK06546 pyruvate dehydrogenas 93.5 0.18 3.8E-06 50.9 6.5 64 104-175 258-323 (578)
62 PRK08617 acetolactate synthase 93.4 0.17 3.6E-06 50.5 6.2 68 105-175 262-331 (552)
63 TIGR00173 menD 2-succinyl-5-en 93.3 0.2 4.2E-06 48.6 6.3 66 106-175 270-337 (432)
64 PRK07710 acetolactate synthase 93.0 0.3 6.5E-06 49.1 7.4 70 104-175 274-345 (571)
65 PRK07064 hypothetical protein; 92.9 0.22 4.8E-06 49.5 6.2 68 105-175 258-327 (544)
66 TIGR02720 pyruv_oxi_spxB pyruv 92.8 0.23 5E-06 50.0 6.2 68 104-175 257-326 (575)
67 PLN00022 electron transfer fla 92.5 0.29 6.2E-06 46.8 6.1 60 111-175 293-353 (356)
68 PRK11916 electron transfer fla 92.4 0.3 6.6E-06 45.9 6.1 60 111-175 251-311 (312)
69 PRK03363 fixB putative electro 92.3 0.33 7.2E-06 45.6 6.2 60 111-175 252-312 (313)
70 PRK09124 pyruvate dehydrogenas 92.3 0.32 7E-06 48.8 6.5 64 105-175 259-324 (574)
71 COG2025 FixB Electron transfer 91.8 0.43 9.3E-06 44.9 6.2 60 111-175 251-311 (313)
72 KOG1185 Thiamine pyrophosphate 91.5 0.28 6E-06 48.6 4.8 69 107-176 272-343 (571)
73 PLN02573 pyruvate decarboxylas 89.6 0.54 1.2E-05 47.5 5.2 69 104-175 284-352 (578)
74 PRK07092 benzoylformate decarb 89.5 0.62 1.3E-05 46.3 5.4 72 103-175 264-336 (530)
75 PRK06457 pyruvate dehydrogenas 89.4 0.92 2E-05 45.3 6.6 59 104-169 252-312 (549)
76 cd02766 MopB_3 The MopB_3 CD i 89.4 0.41 8.9E-06 47.4 4.0 55 106-160 152-208 (501)
77 cd02750 MopB_Nitrate-R-NarG-li 89.1 0.9 2E-05 44.4 6.2 55 106-160 165-221 (461)
78 COG3962 Acetolactate synthase 88.3 1.1 2.5E-05 44.4 6.1 70 105-175 289-358 (617)
79 PRK09444 pntB pyridine nucleot 88.2 1.3 2.8E-05 43.7 6.4 88 87-174 354-462 (462)
80 cd02765 MopB_4 The MopB_4 CD i 88.1 0.67 1.5E-05 46.6 4.7 55 106-160 154-210 (567)
81 cd02759 MopB_Acetylene-hydrata 88.1 0.96 2.1E-05 44.3 5.6 54 107-160 156-212 (477)
82 TIGR03393 indolpyr_decarb indo 88.0 0.39 8.5E-06 47.9 2.9 69 104-175 265-335 (539)
83 PF02233 PNTB: NAD(P) transhyd 87.5 0.65 1.4E-05 45.9 4.0 87 88-174 356-463 (463)
84 cd02753 MopB_Formate-Dh-H Form 86.6 1.5 3.2E-05 43.2 6.0 55 106-160 151-207 (512)
85 smart00834 CxxC_CXXC_SSSS Puta 86.1 0.43 9.3E-06 30.5 1.3 34 48-87 4-37 (41)
86 cd02767 MopB_ydeP The MopB_yde 86.0 1.8 3.8E-05 43.9 6.3 44 106-149 158-203 (574)
87 PRK07449 2-succinyl-5-enolpyru 86.0 1.8 3.8E-05 43.4 6.3 62 105-169 280-343 (568)
88 COG3383 Uncharacterized anaero 85.0 2.1 4.6E-05 44.8 6.2 95 72-174 385-489 (978)
89 cd02768 MopB_NADH-Q-OR-NuoG2 M 84.9 2.6 5.6E-05 39.7 6.6 57 106-164 143-202 (386)
90 cd02755 MopB_Thiosulfate-R-lik 84.8 0.92 2E-05 44.2 3.5 53 108-160 153-208 (454)
91 TIGR03479 DMSO_red_II_alp DMSO 84.5 0.99 2.2E-05 48.1 3.9 62 106-167 219-284 (912)
92 cd02763 MopB_2 The MopB_2 CD i 83.8 2.2 4.7E-05 44.2 5.9 54 107-160 151-206 (679)
93 cd02754 MopB_Nitrate-R-NapA-li 83.7 2 4.3E-05 42.9 5.5 54 107-160 153-210 (565)
94 PRK09939 putative oxidoreducta 83.5 1.9 4.2E-05 45.2 5.4 45 106-150 203-249 (759)
95 PF09723 Zn-ribbon_8: Zinc rib 83.4 0.55 1.2E-05 30.9 0.9 34 47-86 3-37 (42)
96 cd02762 MopB_1 The MopB_1 CD i 83.0 1.2 2.7E-05 44.3 3.7 55 106-160 151-213 (539)
97 TIGR01591 Fdh-alpha formate de 83.0 1.9 4.1E-05 43.9 5.1 54 107-160 151-206 (671)
98 TIGR01553 formate-DH-alph form 82.9 2.3 5.1E-05 46.0 5.9 54 107-160 217-272 (1009)
99 TIGR00509 bisC_fam molybdopter 82.7 1.5 3.2E-05 45.8 4.2 51 109-159 165-226 (770)
100 cd02770 MopB_DmsA-EC This CD ( 82.6 1.8 3.8E-05 44.0 4.6 55 106-160 161-221 (617)
101 PF03366 YEATS: YEATS family; 82.4 3.6 7.7E-05 31.2 5.2 44 205-253 3-50 (84)
102 cd00368 Molybdopterin-Binding 81.8 1.7 3.7E-05 40.4 4.0 54 106-159 151-206 (374)
103 cd02760 MopB_Phenylacetyl-CoA- 81.2 3.5 7.5E-05 43.3 6.3 55 106-160 168-225 (760)
104 TIGR01701 Fdhalpha-like oxidor 80.0 4.1 8.9E-05 42.6 6.4 45 106-150 193-239 (743)
105 cd02752 MopB_Formate-Dh-Na-lik 79.7 2.6 5.6E-05 43.5 4.7 55 106-160 164-221 (649)
106 cd02757 MopB_Arsenate-R This C 79.2 3.5 7.5E-05 41.1 5.3 53 108-160 159-215 (523)
107 cd02758 MopB_Tetrathionate-Ra 78.6 2.5 5.3E-05 44.2 4.2 53 107-160 207-269 (735)
108 COG3091 SprT Zn-dependent meta 78.3 0.45 9.7E-06 40.2 -1.1 79 4-87 69-151 (156)
109 PRK15488 thiosulfate reductase 78.3 4 8.7E-05 42.4 5.7 53 108-160 193-249 (759)
110 TIGR02098 MJ0042_CXXC MJ0042 f 77.8 1.7 3.8E-05 27.5 1.8 34 49-86 2-35 (38)
111 cd02769 MopB_DMSOR-BSOR-TMAOR 77.7 4 8.7E-05 41.4 5.4 60 108-167 167-240 (609)
112 COG1029 FwdB Formylmethanofura 76.6 5.8 0.00012 38.2 5.7 74 87-164 306-385 (429)
113 PF00384 Molybdopterin: Molybd 76.4 1.7 3.6E-05 41.3 2.1 63 105-167 105-172 (432)
114 PF07295 DUF1451: Protein of u 76.0 2.1 4.6E-05 35.9 2.4 30 47-85 110-139 (146)
115 TIGR03394 indol_phenyl_DC indo 75.6 2.3 5E-05 42.5 2.9 68 104-174 261-330 (535)
116 PRK00398 rpoP DNA-directed RNA 75.3 2.4 5.1E-05 28.2 2.0 29 48-85 2-30 (46)
117 TIGR02605 CxxC_CxxC_SSSS putat 74.6 1.8 3.8E-05 29.3 1.3 31 48-84 4-34 (52)
118 PRK07860 NADH dehydrogenase su 74.3 4.6 0.0001 42.5 4.9 55 106-160 371-429 (797)
119 cd05014 SIS_Kpsf KpsF-like pro 74.0 5.3 0.00012 31.3 4.2 57 108-164 44-101 (128)
120 KOG3954 Electron transfer flav 73.6 4.7 0.0001 37.3 4.1 59 112-175 275-334 (336)
121 PRK06266 transcription initiat 73.4 3.1 6.7E-05 35.9 2.8 36 45-88 113-148 (178)
122 cd02751 MopB_DMSOR-like The Mo 73.4 8.5 0.00018 39.0 6.4 53 108-160 165-229 (609)
123 COG1282 PntB NAD/NADP transhyd 72.8 5.7 0.00012 38.4 4.6 87 87-174 356-463 (463)
124 PRK13937 phosphoheptose isomer 72.5 6.3 0.00014 33.8 4.6 56 108-163 103-159 (188)
125 PRK06260 threonine synthase; V 72.4 2.6 5.6E-05 40.5 2.3 30 47-87 1-30 (397)
126 TIGR01973 NuoG NADH-quinone ox 72.4 5.6 0.00012 40.3 4.9 55 106-160 357-414 (603)
127 TIGR02166 dmsA_ynfE anaerobic 72.3 5 0.00011 41.9 4.6 55 106-160 209-270 (797)
128 TIGR00373 conserved hypothetic 72.3 3.4 7.3E-05 34.9 2.7 38 42-87 102-139 (158)
129 PRK11032 hypothetical protein; 72.1 2.6 5.7E-05 35.9 2.0 29 48-85 123-151 (160)
130 cd02773 MopB_Res-Cmplx1_Nad11 71.3 9.1 0.0002 36.1 5.7 51 106-156 140-193 (375)
131 TIGR03127 RuMP_HxlB 6-phospho 70.9 5 0.00011 33.8 3.5 56 108-163 69-125 (179)
132 cd02761 MopB_FmdB-FwdB The Mop 70.4 10 0.00022 36.0 5.9 53 108-160 127-190 (415)
133 cd05006 SIS_GmhA Phosphoheptos 70.4 9 0.0002 32.2 5.0 55 108-162 98-153 (177)
134 PRK14990 anaerobic dimethyl su 70.3 7.2 0.00016 41.0 5.2 56 106-161 226-288 (814)
135 cd02772 MopB_NDH-1_NuoG2 MopB_ 70.1 8.1 0.00018 36.8 5.2 45 106-150 147-193 (414)
136 smart00531 TFIIE Transcription 70.0 3.6 7.8E-05 34.2 2.4 37 49-88 99-135 (147)
137 cd02068 radical_SAM_B12_BD B12 68.6 17 0.00037 28.7 6.0 66 110-175 38-111 (127)
138 TIGR01580 narG respiratory nit 68.4 6 0.00013 43.6 4.2 60 108-167 242-305 (1235)
139 PF05191 ADK_lid: Adenylate ki 68.4 3.8 8.2E-05 26.2 1.7 30 50-86 2-31 (36)
140 PRK13532 nitrate reductase cat 66.5 8.1 0.00018 40.8 4.7 54 107-160 202-259 (830)
141 TIGR02026 BchE magnesium-proto 65.6 19 0.00042 35.6 6.9 65 110-174 62-135 (497)
142 PRK12496 hypothetical protein; 65.5 4.5 9.7E-05 34.4 2.1 53 21-87 94-154 (164)
143 cd02764 MopB_PHLH The MopB_PHL 65.4 12 0.00025 37.3 5.3 53 108-160 193-255 (524)
144 cd05008 SIS_GlmS_GlmD_1 SIS (S 65.3 9.3 0.0002 29.8 3.8 56 108-163 43-99 (126)
145 COG0243 BisC Anaerobic dehydro 64.6 5.8 0.00013 41.3 3.2 54 106-159 194-252 (765)
146 PF13717 zinc_ribbon_4: zinc-r 63.6 6 0.00013 25.1 1.9 33 49-85 2-34 (36)
147 cd05710 SIS_1 A subgroup of th 63.6 11 0.00024 29.8 3.9 57 108-164 44-101 (120)
148 TIGR00354 polC DNA polymerase, 62.8 4.7 0.0001 43.2 2.0 39 42-91 1000-1043(1095)
149 TIGR01706 NAPA periplasmic nit 61.3 11 0.00023 40.0 4.4 53 107-160 202-259 (830)
150 PRK04940 hypothetical protein; 61.3 8.6 0.00019 33.4 3.1 63 87-152 26-96 (180)
151 PRK07591 threonine synthase; V 61.0 5.6 0.00012 38.7 2.1 29 47-87 16-44 (421)
152 PF13719 zinc_ribbon_5: zinc-r 61.0 6.5 0.00014 25.0 1.7 33 49-85 2-34 (37)
153 COG3364 Zn-ribbon containing p 60.9 4.9 0.00011 31.8 1.4 27 50-85 3-29 (112)
154 TIGR00595 priA primosomal prot 60.8 17 0.00036 36.4 5.5 22 102-123 301-322 (505)
155 PRK08493 NADH dehydrogenase su 60.5 17 0.00037 38.6 5.7 69 106-174 365-442 (819)
156 COG3961 Pyruvate decarboxylase 60.3 13 0.00028 37.5 4.5 78 92-174 249-335 (557)
157 PF09845 DUF2072: Zn-ribbon co 59.9 3.7 8E-05 33.9 0.6 26 51-85 3-28 (131)
158 PRK04023 DNA polymerase II lar 59.5 5.7 0.00012 42.8 2.0 39 42-91 1025-1068(1121)
159 PF04016 DUF364: Domain of unk 59.5 12 0.00025 31.2 3.5 70 102-172 53-130 (147)
160 PRK00945 acetyl-CoA decarbonyl 59.1 18 0.00039 31.1 4.7 64 105-172 99-166 (171)
161 PF13240 zinc_ribbon_2: zinc-r 58.9 5.9 0.00013 22.7 1.1 23 51-86 1-23 (23)
162 PLN02980 2-oxoglutarate decarb 58.4 20 0.00043 41.1 6.1 64 107-173 594-660 (1655)
163 PRK14714 DNA polymerase II lar 57.8 6.3 0.00014 43.4 2.0 39 42-91 1241-1284(1337)
164 cd00350 rubredoxin_like Rubred 57.7 8.9 0.00019 23.7 1.9 24 50-84 2-25 (33)
165 PRK05580 primosome assembly pr 57.2 21 0.00045 37.0 5.6 22 102-123 469-490 (679)
166 TIGR03129 one_C_dehyd_B formyl 57.0 18 0.00039 34.2 4.9 53 108-160 133-196 (421)
167 TIGR03471 HpnJ hopanoid biosyn 56.6 49 0.0011 32.4 7.9 71 103-173 60-139 (472)
168 PF09538 FYDLN_acid: Protein o 56.6 8.1 0.00018 30.8 2.0 30 50-89 10-39 (108)
169 COG1996 RPC10 DNA-directed RNA 56.5 6.6 0.00014 27.0 1.2 28 49-85 6-33 (49)
170 COG1737 RpiR Transcriptional r 55.9 18 0.00039 33.1 4.5 57 105-161 171-228 (281)
171 PF13248 zf-ribbon_3: zinc-rib 55.6 5.8 0.00012 23.3 0.8 24 50-86 3-26 (26)
172 PRK09129 NADH dehydrogenase su 55.6 24 0.00052 36.9 5.9 46 106-151 365-412 (776)
173 TIGR00441 gmhA phosphoheptose 55.6 33 0.00072 28.3 5.7 52 109-160 77-129 (154)
174 PRK07586 hypothetical protein; 55.4 37 0.0008 33.5 6.9 20 103-122 254-273 (514)
175 PRK11302 DNA-binding transcrip 55.4 22 0.00047 32.0 4.9 54 108-161 172-225 (284)
176 cd00729 rubredoxin_SM Rubredox 55.1 12 0.00026 23.4 2.2 26 49-85 2-27 (34)
177 TIGR03844 cysteate_syn cysteat 55.1 8.6 0.00019 37.3 2.3 28 49-88 2-29 (398)
178 PRK12474 hypothetical protein; 54.9 40 0.00087 33.4 7.1 59 104-175 259-320 (518)
179 cd05005 SIS_PHI Hexulose-6-pho 54.0 16 0.00034 30.8 3.5 57 108-164 72-129 (179)
180 PF02591 DUF164: Putative zinc 53.7 16 0.00035 25.1 2.9 41 39-86 16-56 (56)
181 PRK13938 phosphoheptose isomer 53.1 18 0.00039 31.6 3.8 57 107-163 109-166 (196)
182 TIGR02300 FYDLN_acid conserved 53.0 10 0.00023 31.1 2.1 31 49-89 9-39 (129)
183 PRK06450 threonine synthase; V 52.8 9.8 0.00021 35.9 2.2 26 50-87 4-29 (338)
184 COG1379 PHP family phosphoeste 52.1 3.5 7.7E-05 39.1 -0.8 40 44-91 241-280 (403)
185 CHL00174 accD acetyl-CoA carbo 52.0 24 0.00052 33.0 4.6 33 49-89 38-70 (296)
186 PF01475 FUR: Ferric uptake re 50.8 22 0.00047 27.9 3.7 48 4-62 44-93 (120)
187 PRK00564 hypA hydrogenase nick 49.9 11 0.00025 30.1 1.9 36 40-85 62-97 (117)
188 cd05013 SIS_RpiR RpiR-like pro 49.4 30 0.00064 26.7 4.2 57 108-164 57-114 (139)
189 cd05005 SIS_PHI Hexulose-6-pho 49.1 83 0.0018 26.3 7.2 75 96-170 17-95 (179)
190 PF01155 HypA: Hydrogenase exp 48.7 10 0.00022 30.2 1.4 35 40-85 61-95 (113)
191 TIGR00300 conserved hypothetic 48.2 21 0.00046 34.7 3.7 66 106-175 334-405 (407)
192 PRK14991 tetrathionate reducta 48.1 23 0.00051 38.6 4.4 60 108-167 282-353 (1031)
193 COG1198 PriA Primosomal protei 47.8 59 0.0013 34.2 7.1 31 41-85 454-484 (730)
194 cd02774 MopB_Res-Cmplx1_Nad11- 47.5 26 0.00057 33.5 4.2 45 104-148 141-188 (366)
195 COG2331 Uncharacterized protei 46.8 11 0.00024 28.3 1.2 43 48-96 11-58 (82)
196 COG3357 Predicted transcriptio 46.1 10 0.00023 29.4 1.0 28 49-85 58-85 (97)
197 PRK11557 putative DNA-binding 45.5 30 0.00066 31.1 4.2 57 105-161 169-226 (278)
198 COG0761 lytB 4-Hydroxy-3-methy 45.3 26 0.00056 32.7 3.7 68 106-174 207-281 (294)
199 PRK00414 gmhA phosphoheptose i 45.1 38 0.00081 29.2 4.5 55 109-163 109-164 (192)
200 PF03029 ATP_bind_1: Conserved 45.1 13 0.00028 33.4 1.6 53 117-169 1-59 (238)
201 PRK14715 DNA polymerase II lar 45.0 13 0.00029 41.3 2.0 57 42-113 1530-1591(1627)
202 COG1439 Predicted nucleic acid 44.9 15 0.00032 31.9 1.9 27 49-88 139-165 (177)
203 PF13692 Glyco_trans_1_4: Glyc 44.3 39 0.00085 26.0 4.2 80 87-174 52-133 (135)
204 smart00659 RPOLCX RNA polymera 44.2 19 0.0004 24.0 1.9 26 50-85 3-28 (44)
205 PRK02947 hypothetical protein; 43.9 37 0.00079 30.5 4.4 53 108-160 103-167 (246)
206 PRK14873 primosome assembly pr 43.7 37 0.00081 35.2 5.0 13 74-88 422-435 (665)
207 cd03805 GT1_ALG2_like This fam 43.7 1.4E+02 0.0031 27.3 8.5 67 106-175 294-363 (392)
208 PF12172 DUF35_N: Rubredoxin-l 43.6 13 0.00028 23.4 1.0 28 44-84 6-33 (37)
209 TIGR02164 torA trimethylamine- 43.6 23 0.0005 37.4 3.5 51 109-159 208-273 (822)
210 PRK12380 hydrogenase nickel in 43.6 17 0.00037 28.9 2.0 35 40-85 61-95 (113)
211 PRK15482 transcriptional regul 43.3 34 0.00074 31.0 4.2 58 107-164 178-236 (285)
212 KOG1532 GTPase XAB1, interacts 43.1 20 0.00043 33.8 2.5 52 110-161 17-72 (366)
213 TIGR03127 RuMP_HxlB 6-phospho 42.7 1E+02 0.0022 25.6 6.8 80 96-175 14-99 (179)
214 PF01380 SIS: SIS domain SIS d 42.5 14 0.00031 28.6 1.4 56 107-162 49-105 (131)
215 PRK08166 NADH dehydrogenase su 41.5 19 0.00042 38.1 2.5 41 107-147 367-409 (847)
216 PRK09130 NADH dehydrogenase su 41.5 53 0.0012 34.1 5.7 45 106-150 359-406 (687)
217 PF13580 SIS_2: SIS domain; PD 41.5 40 0.00086 27.3 3.9 36 109-144 101-136 (138)
218 TIGR00100 hypA hydrogenase nic 40.9 20 0.00044 28.6 2.0 28 47-85 68-95 (115)
219 PLN02275 transferase, transfer 40.1 1.4E+02 0.003 27.9 7.9 78 89-170 287-367 (371)
220 PRK09462 fur ferric uptake reg 39.7 52 0.0011 27.0 4.4 48 3-61 53-102 (148)
221 cd07153 Fur_like Ferric uptake 39.5 60 0.0013 25.0 4.6 48 3-61 36-85 (116)
222 PRK03681 hypA hydrogenase nick 39.2 22 0.00047 28.4 2.0 29 47-85 68-96 (114)
223 PF05728 UPF0227: Uncharacteri 38.6 23 0.00049 30.7 2.1 50 98-150 42-93 (187)
224 cd03822 GT1_ecORF704_like This 38.1 1.9E+02 0.0041 25.5 8.2 85 86-174 245-332 (366)
225 PRK11337 DNA-binding transcrip 38.0 45 0.00098 30.2 4.1 55 107-161 183-238 (292)
226 cd04795 SIS SIS domain. SIS (S 37.8 46 0.00099 23.7 3.4 39 107-145 43-81 (87)
227 COG4821 Uncharacterized protei 37.5 52 0.0011 29.5 4.2 39 107-145 100-138 (243)
228 PF14353 CpXC: CpXC protein 37.2 19 0.00041 28.8 1.4 16 44-59 33-48 (128)
229 PRK13936 phosphoheptose isomer 37.2 61 0.0013 28.0 4.6 58 108-165 108-169 (197)
230 TIGR00274 N-acetylmuramic acid 36.4 50 0.0011 30.6 4.2 53 109-161 124-177 (291)
231 cd03816 GT1_ALG1_like This fam 36.3 1.7E+02 0.0037 27.9 8.0 83 89-175 295-380 (415)
232 cd02771 MopB_NDH-1_NuoG2-N7 Mo 35.7 45 0.00097 32.4 4.0 19 106-124 140-158 (472)
233 cd05007 SIS_Etherase N-acetylm 35.4 50 0.0011 29.9 3.9 52 109-160 116-168 (257)
234 PRK08197 threonine synthase; V 35.3 24 0.00051 33.9 1.9 15 48-62 6-20 (394)
235 PRK11382 frlB fructoselysine-6 35.2 51 0.0011 31.0 4.1 54 109-162 90-144 (340)
236 PF10087 DUF2325: Uncharacteri 35.1 64 0.0014 24.4 4.0 42 104-145 41-82 (97)
237 PF02310 B12-binding: B12 bind 34.9 37 0.00081 26.1 2.7 82 89-171 30-121 (121)
238 TIGR00315 cdhB CO dehydrogenas 34.7 84 0.0018 26.7 5.0 63 105-172 91-158 (162)
239 COG1579 Zn-ribbon protein, pos 34.0 24 0.00053 32.0 1.6 41 39-86 191-231 (239)
240 PRK15102 trimethylamine N-oxid 34.0 59 0.0013 34.3 4.7 59 109-167 211-286 (825)
241 TIGR03713 acc_sec_asp1 accesso 33.7 1E+02 0.0022 30.9 6.2 77 89-175 409-487 (519)
242 PF02401 LYTB: LytB protein; 32.9 61 0.0013 30.1 4.1 72 102-174 200-278 (281)
243 cd06300 PBP1_ABC_sugar_binding 32.8 3.1E+02 0.0068 23.5 8.6 59 88-148 35-95 (272)
244 PRK10886 DnaA initiator-associ 32.8 61 0.0013 28.3 3.9 57 107-163 105-165 (196)
245 TIGR00393 kpsF KpsF/GutQ famil 32.8 85 0.0018 27.8 5.0 54 108-161 44-98 (268)
246 PRK11543 gutQ D-arabinose 5-ph 32.8 50 0.0011 30.3 3.6 53 108-160 86-139 (321)
247 PRK00762 hypA hydrogenase nick 32.7 25 0.00055 28.4 1.4 32 48-85 69-101 (124)
248 cd06270 PBP1_GalS_like Ligand 32.6 2.6E+02 0.0056 24.0 8.0 35 110-148 54-88 (268)
249 PRK03824 hypA hydrogenase nick 32.5 34 0.00074 28.1 2.2 15 48-62 69-83 (135)
250 PRK10892 D-arabinose 5-phospha 32.1 66 0.0014 29.6 4.3 54 108-161 91-145 (326)
251 PRK05321 nicotinate phosphorib 32.1 87 0.0019 30.6 5.2 81 90-177 309-394 (400)
252 COG1545 Predicted nucleic-acid 32.1 34 0.00074 28.3 2.1 29 45-86 25-53 (140)
253 PF03447 NAD_binding_3: Homose 32.1 53 0.0011 25.4 3.1 37 111-150 59-95 (117)
254 PF10122 Mu-like_Com: Mu-like 31.9 13 0.00029 25.7 -0.3 32 47-85 2-33 (51)
255 PLN02569 threonine synthase 31.9 28 0.00061 34.7 1.8 28 48-87 48-75 (484)
256 KOG3035 Isoamyl acetate-hydrol 31.2 26 0.00056 31.6 1.3 16 84-99 3-18 (245)
257 cd06267 PBP1_LacI_sugar_bindin 31.2 2.7E+02 0.0059 23.3 7.7 44 102-149 45-89 (264)
258 PF13407 Peripla_BP_4: Peripla 30.9 2.2E+02 0.0047 24.4 7.1 52 94-147 37-89 (257)
259 PRK05441 murQ N-acetylmuramic 30.4 87 0.0019 29.1 4.7 54 109-162 129-183 (299)
260 cd02756 MopB_Arsenite-Ox Arsen 30.3 77 0.0017 33.0 4.7 52 105-156 217-288 (676)
261 COG1675 TFA1 Transcription ini 30.0 42 0.00091 29.1 2.4 31 49-87 113-143 (176)
262 TIGR02693 arsenite_ox_L arseni 29.4 71 0.0015 33.9 4.4 50 106-155 215-283 (806)
263 TIGR00216 ispH_lytB (E)-4-hydr 29.3 71 0.0015 29.6 3.9 71 103-174 200-277 (280)
264 PRK04351 hypothetical protein; 29.2 23 0.00051 29.7 0.7 38 44-88 107-144 (149)
265 cd05017 SIS_PGI_PMI_1 The memb 29.1 68 0.0015 25.0 3.3 38 108-145 40-77 (119)
266 PRK14101 bifunctional glucokin 29.1 76 0.0016 32.5 4.5 55 107-161 511-565 (638)
267 PF10263 SprT-like: SprT-like 28.6 29 0.00062 28.4 1.1 36 46-88 120-155 (157)
268 TIGR01514 NAPRTase nicotinate 28.5 1.3E+02 0.0028 29.3 5.7 80 90-176 309-393 (394)
269 PRK12570 N-acetylmuramic acid- 28.2 83 0.0018 29.2 4.2 51 110-160 126-177 (296)
270 COG1867 TRM1 N2,N2-dimethylgua 27.9 50 0.0011 32.0 2.7 62 49-124 240-302 (380)
271 PLN02929 NADH kinase 27.6 97 0.0021 29.1 4.5 39 107-149 60-98 (301)
272 PF03604 DNA_RNApol_7kD: DNA d 27.2 53 0.0012 20.4 1.8 25 51-85 2-26 (32)
273 PF10571 UPF0547: Uncharacteri 26.4 47 0.001 19.6 1.4 21 51-84 2-22 (26)
274 PF01927 Mut7-C: Mut7-C RNAse 25.9 48 0.001 27.4 2.0 34 49-84 91-132 (147)
275 KOG2979 Protein involved in DN 25.9 26 0.00056 32.2 0.4 57 39-96 166-237 (262)
276 COG3925 N-terminal domain of t 25.8 44 0.00095 26.2 1.5 32 110-149 39-70 (103)
277 PF01596 Methyltransf_3: O-met 25.3 1E+02 0.0022 27.0 4.1 66 107-174 41-117 (205)
278 KOG3123 Diphthine synthase [Tr 24.9 66 0.0014 29.0 2.7 35 111-145 75-110 (272)
279 cd06273 PBP1_GntR_like_1 This 24.7 4.4E+02 0.0095 22.4 8.5 33 111-147 55-87 (268)
280 cd06294 PBP1_ycjW_transcriptio 24.1 4.5E+02 0.0097 22.3 8.5 48 98-149 45-94 (270)
281 PF00301 Rubredoxin: Rubredoxi 24.0 60 0.0013 21.9 1.8 13 49-61 1-13 (47)
282 cd03806 GT1_ALG11_like This fa 23.9 4.7E+02 0.01 24.9 8.7 80 88-175 305-391 (419)
283 PF13380 CoA_binding_2: CoA bi 23.6 2E+02 0.0042 22.6 5.0 60 115-174 3-75 (116)
284 PRK10017 colanic acid biosynth 23.5 2.9E+02 0.0063 27.0 7.2 77 102-181 108-201 (426)
285 PRK08329 threonine synthase; V 23.1 49 0.0011 31.2 1.7 11 50-60 2-12 (347)
286 PRK04860 hypothetical protein; 23.1 78 0.0017 26.9 2.8 42 44-88 114-155 (160)
287 PRK12360 4-hydroxy-3-methylbut 23.0 99 0.0021 28.7 3.6 70 104-174 202-278 (281)
288 cd03819 GT1_WavL_like This fam 22.8 3.7E+02 0.008 23.8 7.4 68 105-174 257-328 (355)
289 COG5216 Uncharacterized conser 22.6 42 0.00091 24.1 0.8 38 43-85 16-53 (67)
290 COG1110 Reverse gyrase [DNA re 22.6 80 0.0017 34.6 3.2 51 50-122 695-745 (1187)
291 cd03801 GT1_YqgM_like This fam 22.4 4E+02 0.0086 22.8 7.3 67 104-173 268-338 (374)
292 cd06299 PBP1_LacI_like_13 Liga 22.3 4.2E+02 0.0092 22.5 7.4 36 110-149 54-89 (265)
293 PLN02589 caffeoyl-CoA O-methyl 22.2 1.2E+02 0.0027 27.3 4.1 64 108-173 76-150 (247)
294 PHA02768 hypothetical protein; 22.2 77 0.0017 22.3 2.1 33 50-84 6-39 (55)
295 PRK05638 threonine synthase; V 22.0 58 0.0013 31.8 2.0 11 50-60 2-12 (442)
296 cd04950 GT1_like_1 Glycosyltra 22.0 2E+02 0.0043 26.8 5.6 83 88-176 254-340 (373)
297 TIGR02663 nifX nitrogen fixati 22.0 3E+02 0.0065 21.6 5.9 63 102-183 54-116 (119)
298 cd00730 rubredoxin Rubredoxin; 21.9 73 0.0016 21.8 1.9 12 50-61 2-13 (50)
299 TIGR02149 glgA_Coryne glycogen 21.9 3.1E+02 0.0068 24.9 6.8 55 89-149 261-315 (388)
300 cd01539 PBP1_GGBP Periplasmic 21.8 5.6E+02 0.012 22.8 8.3 37 110-148 56-92 (303)
301 KOG2593 Transcription initiati 21.8 49 0.0011 32.6 1.4 39 49-89 128-166 (436)
302 KOG4166 Thiamine pyrophosphate 21.7 2E+02 0.0043 28.9 5.5 69 105-174 359-437 (675)
303 PRK15484 lipopolysaccharide 1, 21.4 3.6E+02 0.0078 25.2 7.2 69 105-175 270-343 (380)
304 PRK01045 ispH 4-hydroxy-3-meth 21.3 1.2E+02 0.0025 28.5 3.8 71 103-174 202-279 (298)
305 cd03808 GT1_cap1E_like This fa 21.1 4.2E+02 0.009 22.8 7.2 66 105-173 257-326 (359)
306 COG1773 Rubredoxin [Energy pro 21.1 79 0.0017 22.2 2.0 14 48-61 2-15 (55)
307 PF11789 zf-Nse: Zinc-finger o 20.6 71 0.0015 22.3 1.7 32 50-82 25-56 (57)
308 PF01726 LexA_DNA_bind: LexA D 20.3 56 0.0012 23.4 1.2 19 2-20 40-58 (65)
309 cd01821 Rhamnogalacturan_acety 20.1 4.3E+02 0.0094 21.9 6.8 49 130-178 99-149 (198)
310 PRK13371 4-hydroxy-3-methylbut 20.1 1.3E+02 0.0028 29.3 3.9 44 103-147 278-323 (387)
311 PF05265 DUF723: Protein of un 20.1 1.8E+02 0.0039 20.8 3.7 26 36-61 17-44 (60)
No 1
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.5e-50 Score=360.87 Aligned_cols=243 Identities=47% Similarity=0.750 Sum_probs=217.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+|+.+||+|.+|++.|++++||||||||||.|+|+|+++++||||||+.+.|.+|..+|.++..+++++.+.+.+.|...
T Consensus 100 rPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~at~R~ct~~ 179 (353)
T KOG1905|consen 100 RPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLKATGRHCTGR 179 (353)
T ss_pred CCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccccccccccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999988888877655554422
Q ss_pred ------CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCC
Q 024533 81 ------KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKK 154 (266)
Q Consensus 81 ------~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~ 154 (266)
.|.|.+++.++.|+..+|...|+.|.++.++||++|++||||+|.|..++|..+.+.|+++++||+|+|+.|+.
T Consensus 180 k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~ 259 (353)
T KOG1905|consen 180 KCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKI 259 (353)
T ss_pred ccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccch
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEECcHHHHHHHHHHHcccCCCCccc-ccceeeeccccCCCCCCCcccceeEeeeccCCCCCCCCCceEEEeecCCC
Q 024533 155 ASLVVHAPVDKVIAGVMRHLNLWIPPYVR-VDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDR 233 (266)
Q Consensus 155 adl~I~g~~~evl~~L~~~L~~~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (266)
|++.|+|++|.||..||+.||++||.|++ +|++++..+.. .......+.|.+...++++-..+.+|+..+. |
T Consensus 260 A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~~~d~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s---- 332 (353)
T KOG1905|consen 260 ANLKIHGKVDLVMASLMELLGVEIPAYDRLPDPIFILLTLS--RPGEEHTIPQPLLKNSVEETTKQEPFISTIS-S---- 332 (353)
T ss_pred hheeehhhHHHHHHHHHHHhCCCCCcccCCCcccccccccC--CCCccccccccccccccccCCCCCccccccc-c----
Confidence 99999999999999999999999999997 78888776654 2223478888888999999888899999888 1
Q ss_pred CcchhccccCCCceEEeeeccc
Q 024533 234 PDLKTAILNKQPFKLKRRKQIT 255 (266)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~ 255 (266)
+++.+++|.-.+++.+.
T Consensus 333 -----pi~~~~~~~~~~k~~rr 349 (353)
T KOG1905|consen 333 -----PILKGPRIRTPIKNGRR 349 (353)
T ss_pred -----ccccCCCCcCCccCccc
Confidence 37778888776666554
No 2
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.7e-48 Score=349.15 Aligned_cols=171 Identities=35% Similarity=0.603 Sum_probs=159.2
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++.+||||||||||+|||. ++|+|+|||++..+|.+|++.|+.+.....+. ...+|+||
T Consensus 73 ~Pn~~H~ala~L~~~g~~~~viTQNIDgLh~~aG~--~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~Cp-- 147 (244)
T PRK14138 73 KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGS--KKVIELHGNVEEYYCVRCGKRYTVEDVIEKLE-KSDVPRCD-- 147 (244)
T ss_pred CCCHHHHHHHHHHHcCCceEEEeecccChhhHcCC--CeEEEccCCcCeeEECCCCCcccHHHHHHHHh-cCCCCCCC--
Confidence 59999999999999999999999999999999995 78999999999999999999998765544322 33579999
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.+||+||||||++|++.++++.+++++||++|||||||+|+|+++|+..+.++|+++++||+++|+.|..+++.|+
T Consensus 148 ~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~ 227 (244)
T PRK14138 148 DCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYN 227 (244)
T ss_pred CCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEe
Confidence 89999999999999999999899999999999999999999999999999998999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHccc
Q 024533 161 APVDKVIAGVMRHLNL 176 (266)
Q Consensus 161 g~~~evl~~L~~~L~~ 176 (266)
|+++++|++|++.||+
T Consensus 228 ~~~~~~l~~l~~~~~~ 243 (244)
T PRK14138 228 MDVVEFANRVMSEGGI 243 (244)
T ss_pred CCHHHHHHHHHHHhCC
Confidence 9999999999998875
No 3
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.7e-48 Score=341.15 Aligned_cols=160 Identities=64% Similarity=1.025 Sum_probs=149.7
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++++||||||||||+|||++.++|+|+|||++..+|++|++.|..++....+.....+|+|+
T Consensus 47 ~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C~-- 124 (206)
T cd01410 47 EPTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRCH-- 124 (206)
T ss_pred CCCHHHHHHHHHHHCCCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcCC--
Confidence 599999999999999999999999999999999998889999999999999999999988776665554445689998
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.+||+||||||.+|...++++.+++++||++|||||||+|+|+++|+..++++|+++|+||+++++.|..+|+.|+
T Consensus 125 ~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~ 204 (206)
T cd01410 125 ACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIH 204 (206)
T ss_pred CCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEe
Confidence 89999999999999999998899999999999999999999999999999998999999999999999999999999998
Q ss_pred Cc
Q 024533 161 AP 162 (266)
Q Consensus 161 g~ 162 (266)
|+
T Consensus 205 ~~ 206 (206)
T cd01410 205 GD 206 (206)
T ss_pred CC
Confidence 75
No 4
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=4.2e-48 Score=346.08 Aligned_cols=166 Identities=25% Similarity=0.451 Sum_probs=151.3
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||.+|++|++|+++|++++||||||||||+|||++.++|+|||||++..+|..|++.|+.++....+. ....|+|+
T Consensus 68 ~Pn~~H~~la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~-- 144 (235)
T cd01408 68 KPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIF-NQEVPKCP-- 144 (235)
T ss_pred CCCHHHHHHHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHh-CCCCccCC--
Confidence 699999999999999999999999999999999998889999999999999999999988765443332 23479998
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLV 158 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~ 158 (266)
.|||.|||+||||||.+|++.+..+.+++++||++|||||||+|+|++.|+..++ .|+++|+||+++++.+ ..+|++
T Consensus 145 ~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~ 223 (235)
T cd01408 145 RCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINREPVGHLGKRPFDVA 223 (235)
T ss_pred CCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEE
Confidence 8999999999999999999878888889999999999999999999999997766 6899999999999998 889999
Q ss_pred EECcHHHHHHHH
Q 024533 159 VHAPVDKVIAGV 170 (266)
Q Consensus 159 I~g~~~evl~~L 170 (266)
|+|+++++|++|
T Consensus 224 ~~~~~~~~l~~~ 235 (235)
T cd01408 224 LLGDCDDGVREL 235 (235)
T ss_pred EeCCHHHHHHhC
Confidence 999999999875
No 5
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=5.4e-48 Score=350.06 Aligned_cols=163 Identities=34% Similarity=0.498 Sum_probs=148.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhh-----------
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIG----------- 69 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~----------- 69 (266)
+||++|++|++|+++|++++||||||||||++||+ ++|+|+|||++..+|..|+++|.+++....+.
T Consensus 72 ~Pn~~H~~la~L~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (260)
T cd01409 72 QPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGS--RNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAA 149 (260)
T ss_pred CCCHHHHHHHHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhc
Confidence 59999999999999999999999999999999997 68999999999999999999987654332110
Q ss_pred ---------------ccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHH
Q 024533 70 ---------------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKS 134 (266)
Q Consensus 70 ---------------~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a 134 (266)
....+|+|+ .|||.|||+||||||++|++.+++|.+++++||++|||||||+|+|+++|+..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~p~C~--~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a 227 (260)
T cd01409 150 GQAPDGDVDLEDEQVAGFRVPECE--RCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAA 227 (260)
T ss_pred ccCCCcccccchhhcccCCCCCCC--CCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHH
Confidence 012368998 899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEECCCCCCCCCCccEEEECcHHHHH
Q 024533 135 LRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 167 (266)
Q Consensus 135 ~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl 167 (266)
.++|+++|+||+++|+.|..+++.|+|+++++|
T Consensus 228 ~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 228 AEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred HHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 999999999999999999999999999999875
No 6
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=340.59 Aligned_cols=168 Identities=32% Similarity=0.476 Sum_probs=149.2
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHH-hh--ccCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIET-IG--MKKTPRRC 77 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~-~~--~~~~~p~C 77 (266)
+||++|++|++|+++|++.+||||||||||+|||. ++|+|+|||++..+|..|++.++.+..... .. ....+|+|
T Consensus 91 ~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C 168 (271)
T PTZ00409 91 ELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGN--TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPPEC 168 (271)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCC--CcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCCCCC
Confidence 59999999999999999999999999999999996 689999999999999999998875433211 10 12346899
Q ss_pred CCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCcc
Q 024533 78 SDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKAS 156 (266)
Q Consensus 78 p~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~ad 156 (266)
+ |||.+||+||||||.+|++.+++|.+++++||++|||||||+|+|+++|+..|+++|+++|+||+++|+.+ ..+|
T Consensus 169 ~---Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d 245 (271)
T PTZ00409 169 P---CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISD 245 (271)
T ss_pred C---CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCcccc
Confidence 6 99999999999999999999999999999999999999999999999999999999999999999999987 5689
Q ss_pred EEEECcHHHHHHHHHHHc
Q 024533 157 LVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 157 l~I~g~~~evl~~L~~~L 174 (266)
+.|+|++++++. +.+.|
T Consensus 246 ~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 246 YHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred EEEECcHHHHHH-HHHHh
Confidence 999999999995 44444
No 7
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.5e-45 Score=336.59 Aligned_cols=172 Identities=29% Similarity=0.427 Sum_probs=156.5
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhh-----------
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIG----------- 69 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~----------- 69 (266)
+||++|++|++|+++|++++||||||||||+|||. ++|+|+|||++..+|.+|++.|.+++....+.
T Consensus 82 ~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~--~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (285)
T PRK05333 82 QPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGS--RDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA 159 (285)
T ss_pred CCCHHHHHHHHHHHcCCcccEEecccchhHHHcCC--CCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc
Confidence 59999999999999999999999999999999996 78999999999999999999887653322110
Q ss_pred ---------------ccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHH
Q 024533 70 ---------------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKS 134 (266)
Q Consensus 70 ---------------~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a 134 (266)
....+|+|+ .|||.|||+||||||.+|++.+.++.+++++||++||||||+.|+|++.++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~iP~C~--~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a 237 (285)
T PRK05333 160 APAPDGDADLEWAAFDHFRVPACP--ACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWA 237 (285)
T ss_pred ccCCCccccccccccccCCCCCCC--CCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHH
Confidence 012368998 899999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHccc
Q 024533 135 LRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNL 176 (266)
Q Consensus 135 ~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~ 176 (266)
.++|+++|+||++++..+..+++.|.|+++++|++|++.|++
T Consensus 238 ~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~ 279 (285)
T PRK05333 238 AQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGL 279 (285)
T ss_pred HHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCC
Confidence 889999999999999999999999999999999999999986
No 8
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=1.3e-45 Score=327.27 Aligned_cols=156 Identities=38% Similarity=0.621 Sum_probs=143.9
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++.+||||||||||+|||. ++|+|+|||++..+|++|++.|+++.. ..+ .....|+|+
T Consensus 67 ~Pn~~H~~La~L~~~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~C~~~~~~~~~-~~~-~~~~~p~C~-- 140 (222)
T cd01413 67 QPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAGS--KNVIELHGTLQTAYCVNCGSKYDLEEV-KYA-KKHEVPRCP-- 140 (222)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeccchhhHHcCC--CcEEEccCCcCcceECCCCCCcchhHH-HHh-ccCCCCcCC--
Confidence 59999999999999999999999999999999995 789999999999999999999877643 222 124579998
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.+||+||||||.+|++.++++.+++++||++|||||||+|+|+++|+..|+++|+++|+||+++++.|..++++|+
T Consensus 141 ~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~ 220 (222)
T cd01413 141 KCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQ 220 (222)
T ss_pred CCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEe
Confidence 89999999999999999999899999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 024533 161 AP 162 (266)
Q Consensus 161 g~ 162 (266)
|+
T Consensus 221 ~~ 222 (222)
T cd01413 221 DK 222 (222)
T ss_pred CC
Confidence 74
No 9
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=1.1e-45 Score=332.26 Aligned_cols=170 Identities=35% Similarity=0.565 Sum_probs=156.5
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++++||||||||||++||+ ++|+||||++...+|.+|+..+..++...... ...+|+|+
T Consensus 76 ~Pn~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs--~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~-- 150 (250)
T COG0846 76 QPNKAHYALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHGSLKRVRCSKCGNQYYDEDVIKFIE-DGLIPRCP-- 150 (250)
T ss_pred CCCHHHHHHHHHhhcCCceEEEecccchHHHHcCC--CcEEEeccceeeeEeCCCcCccchhhhhhhcc-cCCCCcCc--
Confidence 69999999999999999999999999999999998 59999999999999999999887655322221 22579999
Q ss_pred CCCC-cccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533 81 KCGS-RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV 159 (266)
Q Consensus 81 ~Cgg-~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I 159 (266)
.||+ .+||+||||||.+|.+.++.+.+.+++||++||+|||+.|+|++.+|..++++|+.+++||+++++.+..+|+.+
T Consensus 151 ~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i 230 (250)
T COG0846 151 KCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVI 230 (250)
T ss_pred cCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHH
Confidence 9999 999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ECcHHHHHHHHHHHcc
Q 024533 160 HAPVDKVIAGVMRHLN 175 (266)
Q Consensus 160 ~g~~~evl~~L~~~L~ 175 (266)
+++++++++.|++.+.
T Consensus 231 ~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 231 RGDAGEVLPLLLEELL 246 (250)
T ss_pred HhhHHHHHHHHHHHhh
Confidence 9999999999988764
No 10
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5.7e-45 Score=326.79 Aligned_cols=165 Identities=39% Similarity=0.655 Sum_probs=154.0
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|++.|++++||||||||||++||. ++|+|+|||++..+|++|++.|..+... ....|+||
T Consensus 76 ~Pn~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~-----~~~~p~C~-- 146 (242)
T PRK00481 76 KPNAAHRALAELEKLGKLVTVITQNIDGLHERAGS--KNVIELHGSLLRARCTKCGQTYDLDEYL-----KPEPPRCP-- 146 (242)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeccchhHHHcCC--CceeeccCCcCceeeCCCCCCcChhhhc-----cCCCCCCC--
Confidence 69999999999999999999999999999999996 7999999999999999999988766433 13468898
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.+||+||||||.+|++.+.++.+++++||++||||||++|+|+++|+..++++|+++|+||++++..+..+++.|.
T Consensus 147 ~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~ 226 (242)
T PRK00481 147 KCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIH 226 (242)
T ss_pred CCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEE
Confidence 89999999999999999998899999999999999999999999999999988888999999999999999999999999
Q ss_pred CcHHHHHHHHHHHc
Q 024533 161 APVDKVIAGVMRHL 174 (266)
Q Consensus 161 g~~~evl~~L~~~L 174 (266)
|+++++|++|+++|
T Consensus 227 ~~~~~~l~~l~~~~ 240 (242)
T PRK00481 227 GKAGEVVPELVEEL 240 (242)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 11
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.3e-44 Score=323.29 Aligned_cols=162 Identities=22% Similarity=0.381 Sum_probs=144.5
Q ss_pred CCCHHHHHHHHHHHc--CCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCC
Q 024533 1 MPSITHMALVELEKA--GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCS 78 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~--g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp 78 (266)
+||.+|++|++|++. |++++||||||||||+|||. ++|+|+|||++..+|++|++.|..+.... ...|+|+
T Consensus 69 ~Pn~~H~~L~~Le~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C~ 141 (242)
T PTZ00408 69 KPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELLKVRCTATGHVFDWTEDVV-----HGSSRCK 141 (242)
T ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeecccchhhHcCC--CcEEEecCccceEEECCCCcccCchhhhh-----cCCCccc
Confidence 599999999999986 88899999999999999996 68999999999999999999886654321 2368998
Q ss_pred CCCCC--CcccccEEEcCC-CCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCc
Q 024533 79 DVKCG--SRLKDTVLDWED-ALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKA 155 (266)
Q Consensus 79 ~~~Cg--g~lrP~Vv~FgE-~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~a 155 (266)
.|| |.+||+|||||| .+|.+.++ +++.+||++|||||||+|+|+++|+..|+++|+++++||++++..+..+
T Consensus 142 --~Cg~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~ 216 (242)
T PTZ00408 142 --CCGCVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQF 216 (242)
T ss_pred --cCCCCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccC
Confidence 676 999999999999 77755444 4588999999999999999999999999999999999999999988888
Q ss_pred cEEEECcHHHHHHHHHHHc
Q 024533 156 SLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 156 dl~I~g~~~evl~~L~~~L 174 (266)
++.|.|+++++|++|++.+
T Consensus 217 ~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 217 DESIYGKASVIVPAWVDRV 235 (242)
T ss_pred CEEEECCHHHHHHHHHHHH
Confidence 9999999999999998865
No 12
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=2.1e-44 Score=319.28 Aligned_cols=162 Identities=34% Similarity=0.538 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||.+|++|++|++++++++||||||||||++||+ ++|+|+|||++..+|..|++.+..+... ....+|+|+
T Consensus 63 ~Pn~~H~~L~~L~~~~~~~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~~~----~~~~~p~C~-- 134 (224)
T cd01412 63 QPNPAHLALAELERRLPNVLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNEEI----PEEELPRCP-- 134 (224)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcchhh----hccCCCCCC--
Confidence 69999999999999998999999999999999998 8999999999999999999988665221 124579999
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.+||+||||||.+|. .++.+.++++++|++|||||||.|.|+++|+..++.+|+++|+||++++..+..+++.|+
T Consensus 135 ~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~ 213 (224)
T cd01412 135 KCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFR 213 (224)
T ss_pred CCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEE
Confidence 8999999999999999998 789999999999999999999999999999988888999999999999999999999999
Q ss_pred CcHHHHHHHHH
Q 024533 161 APVDKVIAGVM 171 (266)
Q Consensus 161 g~~~evl~~L~ 171 (266)
|+++++|++|+
T Consensus 214 g~~~~~l~~l~ 224 (224)
T cd01412 214 GKAGEVLPALL 224 (224)
T ss_pred CCHHHHHHHhC
Confidence 99999999873
No 13
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=7.6e-44 Score=314.85 Aligned_cols=156 Identities=46% Similarity=0.737 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++++||||||||||++||++ +|+|+|||++..+|+.|++.++.+.....+ ....+|+||
T Consensus 63 ~Pn~~H~~L~~L~~~~~~~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C~-- 137 (218)
T cd01407 63 QPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQADI-DREEVPRCP-- 137 (218)
T ss_pred CCCHHHHHHHHHHhcCCCeeEEEeccchhHHHcCCC--CEEECcCCcCcceeCCCcCCCcHHHHhHhh-ccCCCCcCC--
Confidence 699999999999999999999999999999999985 999999999999999999988766433222 234579999
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.|||+||||||.+|+. +.++.+++.++|++||||||+.|+|+++++..+.++|+++|+||+++++.+..+|+.|+
T Consensus 138 ~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~ 216 (218)
T cd01407 138 KCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVIL 216 (218)
T ss_pred CCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCccceEEEe
Confidence 89999999999999999998 99999999999999999999999999999998888999999999999999999999998
Q ss_pred Cc
Q 024533 161 AP 162 (266)
Q Consensus 161 g~ 162 (266)
|+
T Consensus 217 ~~ 218 (218)
T cd01407 217 GD 218 (218)
T ss_pred CC
Confidence 85
No 14
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=9.1e-44 Score=332.31 Aligned_cols=171 Identities=24% Similarity=0.336 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|+.|+++|++.+||||||||||++||++.++|+|+|||++..+|..|++.|+.+.....+. ...+|+|+
T Consensus 99 ~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~vP~C~-- 175 (349)
T PTZ00410 99 QPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEAR-SGKVPHCS-- 175 (349)
T ss_pred CCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHhh-cCCCCCCC--
Confidence 699999999999999999999999999999999998889999999999999999999887765443332 34579998
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--------
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-------- 152 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-------- 152 (266)
.|||.+||+||||||.+|+..++ +.+++++||++|||||||+|+|++.|+..+. .++++|+||++++...
T Consensus 176 ~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~-~~~pvviIN~e~~~~~~~r~~~~~ 253 (349)
T PTZ00410 176 TCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVVP-KDVPRVLFNLERVGGLMFRFPTDP 253 (349)
T ss_pred CCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHHHHHHHh-cCCCEEEECccccCCceeeccCCc
Confidence 89999999999999999988777 8899999999999999999999999997766 6899999999976421
Q ss_pred -----------------------------------------------CCccEEEECcHHHHHHHHHHHccc
Q 024533 153 -----------------------------------------------KKASLVVHAPVDKVIAGVMRHLNL 176 (266)
Q Consensus 153 -----------------------------------------------~~adl~I~g~~~evl~~L~~~L~~ 176 (266)
...|+.+.|+||+-...|++.|||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~ 324 (349)
T PTZ00410 254 LTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQFGDYEADPGGVCRDIFFPGDCQESVRRLAEALGL 324 (349)
T ss_pred cccchhhhhhhcccCccccccccccccccccccccccccccccCccccccceeecccchHHHHHHHHHhCc
Confidence 134677888888888888888887
No 15
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=5.4e-43 Score=311.22 Aligned_cols=152 Identities=31% Similarity=0.503 Sum_probs=139.8
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||.+|++|++|++.| +++||||||||||++||. ++|+|+|||++..+|++|++.|..+.. ...|+|+
T Consensus 73 ~Pn~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~-------~~~p~C~-- 140 (225)
T cd01411 73 KPNIIHQKMAELEKMG-LKAVITQNIDGLHQKAGS--KNVVEFHGSLYRIYCTVCGKTVDWEEY-------LKSPYHA-- 140 (225)
T ss_pred CCCHHHHHHHHHHHcC-CcEEEEeccchhhhhcCC--CcEEEeCCCcCeeEeCCCCCccchhhc-------CCCCCCC--
Confidence 6999999999999987 899999999999999995 789999999999999999988865432 1368998
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.|||+||||||.+|.+.++++.++++++|++|+||||+.|+|+++|+..+. +|+++|+||+++++.+..+++.|+
T Consensus 141 ~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~ 219 (225)
T cd01411 141 KCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAINKEPTQLDSPATLVIK 219 (225)
T ss_pred CCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEECCCCCCCCcchhehhc
Confidence 8999999999999999999889999999999999999999999999999987654 799999999999999999999999
Q ss_pred CcHHHH
Q 024533 161 APVDKV 166 (266)
Q Consensus 161 g~~~ev 166 (266)
| ++++
T Consensus 220 ~-~~~~ 224 (225)
T cd01411 220 D-AVKV 224 (225)
T ss_pred c-hhhh
Confidence 9 8875
No 16
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=2.4e-39 Score=285.06 Aligned_cols=156 Identities=46% Similarity=0.711 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++++||||||||||++||++.++|+|+||++...+|..|++.+..+..... ...|+|+
T Consensus 65 ~P~~~H~~l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~----~~~p~C~-- 138 (222)
T cd00296 65 KPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER----EKPPRCP-- 138 (222)
T ss_pred CCCHHHHHHHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc----cCCCCCC--
Confidence 6999999999999999999999999999999999988899999999999999999988876654322 4579999
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLV 158 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~ 158 (266)
.|||.+||+|++|||.+|+..+.++.+++.++|++|+|||||+|.|+..|+..+.++|+++++||++++..+ ..+++.
T Consensus 139 ~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~ 218 (222)
T cd00296 139 KCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLV 218 (222)
T ss_pred CCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEE
Confidence 899999999999999999887888999999999999999999999999999888889999999999999999 778888
Q ss_pred EECc
Q 024533 159 VHAP 162 (266)
Q Consensus 159 I~g~ 162 (266)
+.|+
T Consensus 219 ~~~~ 222 (222)
T cd00296 219 ILGD 222 (222)
T ss_pred EeCC
Confidence 8764
No 17
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.8e-39 Score=284.03 Aligned_cols=165 Identities=30% Similarity=0.436 Sum_probs=150.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhh-----------
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIG----------- 69 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~----------- 69 (266)
+||++|+||+.||+.|+..++||||||+||.|||+ +++.||||+...+.|..|+...+++...+.+.
T Consensus 111 qPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS--~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~fke~~~ 188 (305)
T KOG2683|consen 111 QPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGS--RMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNPGFKEAIV 188 (305)
T ss_pred CCCchhHHHHHHhhcCceEEEeeccchhhhhhccc--cceeeeccceEEEEecccCcccchHHHHHHHHhcCcchhhhcc
Confidence 59999999999999999999999999999999997 78999999999999999999877653221110
Q ss_pred ------------------ccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccch
Q 024533 70 ------------------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLP 131 (266)
Q Consensus 70 ------------------~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~ 131 (266)
..-.+|.|. +|||.|||+|+||||++|.+..+.+.+.+.+||-+||+||||.|+...+++
T Consensus 189 ~~~~~~pDgDv~lpl~~e~gF~IPeC~--~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i 266 (305)
T KOG2683|consen 189 SPGHQRPDGDVELPLEFEEGFQIPECE--KCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFI 266 (305)
T ss_pred CccccCCCCCeecchhhhhcccCCccc--ccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHHHHHHH
Confidence 012369998 999999999999999999988888999999999999999999999999999
Q ss_pred HHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHH
Q 024533 132 LKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAG 169 (266)
Q Consensus 132 ~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~ 169 (266)
..|...+.++.|||.++|..|..+++.|...|.|+|++
T Consensus 267 ~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~ 304 (305)
T KOG2683|consen 267 RHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKE 304 (305)
T ss_pred HHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhc
Confidence 99999999999999999999999999999999999975
No 18
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=1.8e-39 Score=278.28 Aligned_cols=120 Identities=47% Similarity=0.795 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||.+|++|++|++.|++++||||||||||+|||++ +|+|||||++..+|..|+++|..+.....+. ....|+|+
T Consensus 59 ~Pn~~H~~La~L~~~g~~~~viTQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~~~C~-- 133 (178)
T PF02146_consen 59 EPNPGHRALAELEKKGKLKRVITQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKEYDREDIVDSID-EEEPPRCP-- 133 (178)
T ss_dssp ---HHHHHHHHHHHTTSEEEEEES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBEEEGHHHHHHHH-TTSSCBCT--
T ss_pred CCChhHHHHHHHHHhhhhccceecccchhhhcccch--hhHHHHhhhceeeecCCCccccchhhccccc-cccccccc--
Confidence 599999999999999999999999999999999995 9999999999999999999998776554443 34568998
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhh
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITP 126 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~P 126 (266)
.|||.|||+||||||.+| +.+..+.+++++|||+|||||||+|+|
T Consensus 134 ~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 134 KCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp TTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 999999999999999999 778999999999999999999999998
No 19
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-38 Score=279.96 Aligned_cols=173 Identities=25% Similarity=0.389 Sum_probs=157.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCC-CCcccchhhHHHHhhccCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS-CGVEYMRDFEIETIGMKKTPRRCSD 79 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~-C~~~~~~~~~~~~~~~~~~~p~Cp~ 79 (266)
+||.+||+|+.|.++|.+.++||||||+|++.||++.+.++|.||++...+|.. |++.|+.++....+. .+.+|+|+
T Consensus 104 kPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~-~~~vpkC~- 181 (314)
T KOG2682|consen 104 KPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM-SEVVPKCE- 181 (314)
T ss_pred CchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH-hccCCCCc-
Confidence 699999999999999999999999999999999999999999999999999995 999999888766553 35688998
Q ss_pred CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC----CCCc
Q 024533 80 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK----DKKA 155 (266)
Q Consensus 80 ~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~----d~~a 155 (266)
.|+|.+||+||||||.+|..+++..+.....+||+|||||||+|+|+++||+.+ ....+.+.||++...- .+..
T Consensus 182 -vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFAsLpe~v-p~~v~RlLiNre~~Gp~~~~~r~r 259 (314)
T KOG2682|consen 182 -VCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFASLPEKV-PLSVPRLLINREKAGPFLGMIRYR 259 (314)
T ss_pred -hhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecccchhhh-hhcCceeEecccccCccccCcccc
Confidence 899999999999999999998888888889999999999999999999999764 5678899999998872 2457
Q ss_pred cEEEECcHHHHHHHHHHHcccC
Q 024533 156 SLVVHAPVDKVIAGVMRHLNLW 177 (266)
Q Consensus 156 dl~I~g~~~evl~~L~~~L~~~ 177 (266)
|+.+.|+||+....|++.|||.
T Consensus 260 Dv~~lgd~d~~~eaLvelLGW~ 281 (314)
T KOG2682|consen 260 DVAWLGDCDQGVEALVELLGWK 281 (314)
T ss_pred cchhhccHHHHHHHHHHHhCcH
Confidence 8999999999999999999983
No 20
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-35 Score=277.48 Aligned_cols=180 Identities=22% Similarity=0.330 Sum_probs=157.7
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
.|++.|.+|+.|+++|++.++|||||||||++||+...+++++|||+....|.+|+..++.+...+.+. ....|.||
T Consensus 155 ~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~~-~~~vp~CP-- 231 (412)
T KOG2684|consen 155 NPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDIR-NQEVPVCP-- 231 (412)
T ss_pred CCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHHh-cCcCccCc--
Confidence 489999999999999999999999999999999998788999999999999999999888774444443 45689998
Q ss_pred CCCC------------------cccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEE
Q 024533 81 KCGS------------------RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIV 142 (266)
Q Consensus 81 ~Cgg------------------~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lV 142 (266)
.|.+ .|||+||||||.+|+.+..........+||+|||||||.|+|++.++.. ..+..+.|
T Consensus 232 ~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~-~~~~vpqI 310 (412)
T KOG2684|consen 232 DCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKS-FPAKVPQI 310 (412)
T ss_pred ccccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCccccccHHHHHhh-hcccCcEE
Confidence 8855 8999999999999998877767777788999999999999999999864 45667999
Q ss_pred EECCCCCCCCCCccEEEECcHHHHHHHHHHHcccCCCCccccc
Q 024533 143 IVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVD 185 (266)
Q Consensus 143 iIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~ip~~~~~~ 185 (266)
.||.++.+.. .+|+-+.++||++...+.+.+||..|.-...+
T Consensus 311 liNr~~v~h~-efd~~ll~~CD~v~~~l~~~~g~~~~~~~~~~ 352 (412)
T KOG2684|consen 311 LINRDPVPHA-EFDVELLGDCDDVIRLLCQKCGWLKPLLSLND 352 (412)
T ss_pred EecCcccccc-ccChhhccchHHHHHHHHhhccccchHhhhhh
Confidence 9999977764 46888999999999999999999998776655
No 21
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=96.81 E-value=0.0043 Score=50.39 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=49.3
Q ss_pred hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHH
Q 024533 103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV 170 (266)
Q Consensus 103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L 170 (266)
..+.+.+++||++|++|+++.-........ ......++|.||.++....+ ..++.|.|++..+|.+|
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSDFNTYGFSP-AFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSSTTTTTTTTG-CSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCcccccccccc-ccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 456778899999999999986544433211 12333499999999987653 35899999999998875
No 22
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=96.75 E-value=0.0016 Score=58.19 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHcCC-ccEEEeccccchhhhc
Q 024533 1 MPSITHMALVELEKAGI-LKFVISQNVDSLHLRS 33 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~-l~~viTQNIDgLh~kA 33 (266)
+|+..|.+|++|...+. ...+||+|.|.|.++|
T Consensus 79 ~~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 79 EPSPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CCCHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 48999999999987653 5689999999999986
No 23
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.14 E-value=0.049 Score=54.71 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=52.7
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++||++..+....... ...++++|.||.++....+ ..++.|.||+..+|..|.+.|.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAK--YCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhh--cCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 45667889999999999987665433211 1235689999998876543 4689999999999999988764
No 24
>PRK08322 acetolactate synthase; Reviewed
Probab=95.09 E-value=0.058 Score=53.66 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=52.1
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+...+++||++|++|+++.-.+..... ...+.++|.||.++...+ ...++.|.||+..+|++|.+.+.
T Consensus 256 ~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 256 VHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 456788999999999998765543331 234578999999877643 34689999999999999988764
No 25
>PRK07524 hypothetical protein; Provisional
Probab=95.05 E-value=0.038 Score=54.89 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=51.6
Q ss_pred hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHccc
Q 024533 103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 176 (266)
Q Consensus 103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~~ 176 (266)
..+.+.+++||++|++|+++........-......++++|.||.++.... ...++.|.||+.++|++|.+.+..
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 330 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG 330 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence 34666788999999999998544321100001123567999998876543 246899999999999999988753
No 26
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.05 E-value=0.051 Score=54.56 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=53.0
Q ss_pred hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
..+.+.+.+||++|+||+++.-........ ...+.++|.||.++.... ...++.|.||+.++|+.|++.|.
T Consensus 264 ~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (572)
T PRK08979 264 YEANMAMHNADLIFGIGVRFDDRTTNNLEK--YCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLD 336 (572)
T ss_pred HHHHHHHHhCCEEEEEcCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhh
Confidence 345667889999999999987655433211 224568999999877643 24689999999999999988775
No 27
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.01 E-value=0.053 Score=55.03 Aligned_cols=70 Identities=11% Similarity=0.224 Sum_probs=52.1
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|+|||++.......+.. ...+.++|.||.++.... ...++.|.||+..+|++|++.+.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDE--FASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhh--cCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence 45667889999999999986544332221 234578999999876533 34689999999999999988774
No 28
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=95.00 E-value=0.072 Score=53.72 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=51.3
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+...+.+||++|++|+++.-........ ...+.++|.||.++... ....++.|.+|+.++|++|.+.|.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLDE--FACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHhH--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 4557789999999999987654332211 23467899999987642 334679999999999999988764
No 29
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.94 E-value=0.06 Score=53.99 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=52.7
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|+||+++.......... ...+.++|.||.++.... ...++.|.||+.++|..|++.|.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAK--YCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence 35567889999999999987765443321 234568999998876543 24689999999999999988773
No 30
>PF13289 SIR2_2: SIR2-like domain
Probab=94.87 E-value=0.081 Score=42.43 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=34.9
Q ss_pred hhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCC----EEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcccC
Q 024533 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGG----KIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLW 177 (266)
Q Consensus 102 ~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~----~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~ 177 (266)
+..+.+.+-.+..+|++|-|+.=.....+...+.+... +.++|.+.+. ++....+++..|++
T Consensus 76 ~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~i~ 141 (143)
T PF13289_consen 76 FPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD--------------DENEREFLEKYGIE 141 (143)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc--------------hHHHHHHHHHcCCE
Confidence 33444444467788888999875555555544433222 3555544443 35555666666653
No 31
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.81 E-value=0.061 Score=54.31 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=51.2
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L 174 (266)
.+.+.+++||++|++|+++.-........ ...+.++|.||.++.... ...++.|.||+..+|.+|.+.+
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDV--YTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCcccc--cCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 34567889999999999986544333211 234677999998876643 3468999999999999998876
No 32
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.80 E-value=0.069 Score=53.49 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=51.1
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|+||+++.-........ ...+.++|.||.++.... ...++.|.|++.++|+.|.+.+.
T Consensus 263 ~~~~l~~aD~vl~lG~~l~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 263 ANMAMSECDLLISLGARFDDRVTGKLSE--FAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 4567889999999999987654333211 233568999999876543 24578999999999999988774
No 33
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.77 E-value=0.076 Score=53.84 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=51.5
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC--CCCCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~--~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++||++.......... ...++++|.||.++.. .....++.|.||+.++|+.|.+.|.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~--~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDS--FAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 35567889999999999987643322211 1245678999998754 2335689999999999999988774
No 34
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.73 E-value=0.073 Score=53.86 Aligned_cols=70 Identities=17% Similarity=0.324 Sum_probs=51.8
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|+||+++.......... ...+.++|.||.++....+ ..++.|.||+..+|.+|++.|.
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDA--FSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 34567889999999999986544333211 2345679999998876443 4689999999999999988764
No 35
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.70 E-value=0.073 Score=53.45 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=52.3
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+++.......... ...+.++|.||.++....+ ..++.|.+++.++|+.|.+.|+
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~--~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAK--FCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 35567889999999999987654433211 2235689999998876543 4689999999999999988764
No 36
>PRK05858 hypothetical protein; Provisional
Probab=94.66 E-value=0.11 Score=51.91 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=54.1
Q ss_pred cCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHH
Q 024533 93 WEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV 170 (266)
Q Consensus 93 FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L 170 (266)
|.|..|...-..+.+.+.+||++|++|+++........ ...+.++|.||.++..... ..++.|.|++..+++.|
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 319 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV----FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL 319 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc----cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHH
Confidence 44444432223345678899999999998754322211 1234789999999765432 45799999999999999
Q ss_pred HHHcc
Q 024533 171 MRHLN 175 (266)
Q Consensus 171 ~~~L~ 175 (266)
.+.+.
T Consensus 320 ~~~l~ 324 (542)
T PRK05858 320 AGAGG 324 (542)
T ss_pred HHhcc
Confidence 88764
No 37
>PRK06154 hypothetical protein; Provisional
Probab=94.57 E-value=0.087 Score=52.96 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=50.6
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|+||+++.-..... ....+.++|.||.++... ....++.|.||+.++|+.|++.|.
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~----~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 342 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGL----PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELR 342 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCc----cCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhh
Confidence 35567889999999999987532211 123467888888887643 234689999999999999998775
No 38
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.57 E-value=0.083 Score=52.96 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=51.9
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+...+.+||++|++|+++.-.+....... ...+.++|.||.++..... ..++.|.||+..+|++|++.|.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEM-VETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccc-cCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 45567899999999999876665333111 1235689999988876542 4679999999999999988774
No 39
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.51 E-value=0.09 Score=52.92 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=51.1
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|++|+++.......... ...+.++|.||.++....+ ..++.|.||+.++|.+|.+.++
T Consensus 274 ~~~~l~~aDlil~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 274 ANMAVTECDLLLALGVRFDDRVTGKLEL--FSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCcccc--cCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 5567889999999999987554332211 1234678999988876532 4689999999999999988764
No 40
>PLN02470 acetolactate synthase
Probab=94.47 E-value=0.096 Score=52.76 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=50.9
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|+||+++.......... .....++|.||.++.... ...++.|.||+..+|..|.+.|.
T Consensus 272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 272 YANYAVDSADLLLAFGVRFDDRVTGKLEA--FASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhh--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 34567889999999999986554332211 123467899999876543 24579999999999999988774
No 41
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=94.42 E-value=0.1 Score=51.84 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=50.6
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+++.-+...... ...+.++|.||.++.... ...++.|.|++..+|+.|.+.+.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence 3456788999999999997644322221 123468999999987643 34579999999999999988663
No 42
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.30 E-value=0.13 Score=51.28 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=49.2
Q ss_pred HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEECcHHHHHHHHHHHcc
Q 024533 106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+++|||+|++|+++.-+....-... ...+.++|.|+.++... ....++.|.|++.++|..|.+.|.
T Consensus 260 ~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 330 (554)
T TIGR03254 260 SFALAEADVVMLVGARLNWLLSHGKGKL-WGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAK 330 (554)
T ss_pred HHHHhcCCEEEEECCCCchhhccCchhh-cCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhh
Confidence 4468899999999999874443211101 12357888888876543 334579999999999999998774
No 43
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=94.27 E-value=0.11 Score=52.14 Aligned_cols=67 Identities=12% Similarity=0.231 Sum_probs=48.8
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC-----CCCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-----DKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~-----d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+++|||+|++||++...+... ....++++|.||.++... ....++.|.||+..+|.+|.+.|.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~----~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKI----RPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccc----cCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 3456789999999999875333211 123456899999887643 234589999999999999998875
No 44
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=94.26 E-value=0.098 Score=52.14 Aligned_cols=69 Identities=10% Similarity=0.283 Sum_probs=50.0
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L 174 (266)
.+...+++||++|++||++.-.-...+.. ...+.++|.||.++.... ...++.|.|++.++|+.|.+.+
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLNT--FAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCccc--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 35567789999999999986533222211 233567999998886543 3468999999999999998765
No 45
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.26 E-value=0.11 Score=52.50 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|++|+++.-....... ....+.++|.||.++.... ...++.|.+++..+|..|.+.+.
T Consensus 264 ~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 334 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWANRHTGSVE--VYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAR 334 (591)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCchh--hcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhh
Confidence 456678999999999997654332221 1234578999998877643 34679999999999999988763
No 46
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=94.15 E-value=0.11 Score=51.98 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=51.0
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHH-hcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKS-LRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a-~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+++.-.+...+.... .....++|.||.++.... ...++.|.||+..+|++|.+.+.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~ 337 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEP 337 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhccc
Confidence 3556778999999999998655543221111 113568999998876543 24589999999999999987654
No 47
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.12 E-value=0.13 Score=51.44 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=51.3
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|++|+++......... ....+.++|.||.++....+ ..++.|.+|+.++|.+|.+.+.
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKTE--QFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVE 341 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCHh--hcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhc
Confidence 455778999999999998765433221 12345689999998876542 4589999999999999988764
No 48
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=94.09 E-value=0.11 Score=51.85 Aligned_cols=70 Identities=13% Similarity=0.272 Sum_probs=51.2
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+++.-.....+.. ...+.++|.||.++.... ...++.|.||+.++|+.|.+.+.
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAK--FAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 34567789999999999986543322211 123568999999876533 24589999999999999998774
No 49
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=94.03 E-value=0.12 Score=51.83 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=50.6
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++||++.-........ .....++|.||.++....+ ..++.|.+|+..+|..|.+.|.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 340 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKT--FAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPT 340 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhc
Confidence 34567889999999999986433222211 1235679999988775432 3578999999999999988764
No 50
>PRK08266 hypothetical protein; Provisional
Probab=93.95 E-value=0.087 Score=52.40 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=50.4
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+++... ..... ....+.++|.||.++.... ...++.|.||+..+|+.|.+.+.
T Consensus 256 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSRLELP-TFRWP--WRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHHhCCEEEEeCCCcCcc-ccccc--ccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 3456778999999999998765 22221 1234568899888765533 34689999999999999988764
No 51
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.90 E-value=0.17 Score=50.77 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=48.8
Q ss_pred HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
...+.+||++|++|+++.-......... ...+.++|.||.++.... ...++.|.||+..+|++|++.+.
T Consensus 267 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 337 (569)
T PRK09259 267 SLALANADVVLLVGARLNWLLSHGKGKT-WGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLK 337 (569)
T ss_pred HHHHhcCCEEEEeCCCCchhcccCchhc-cCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhh
Confidence 3457899999999999864432211111 124578998888776543 34578999999999999988774
No 52
>PRK08611 pyruvate oxidase; Provisional
Probab=93.86 E-value=0.14 Score=51.48 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=48.6
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++||++..... + ..+.++|.||.++.... ...++.|.+|+..+|..|.+.+.
T Consensus 260 ~a~~~l~~aDlvl~iG~~~~~~~~--~-----~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 260 PAYEAMQEADLLIMVGTNYPYVDY--L-----PKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHHhCCEEEEeCCCCCcccc--C-----CCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 355678899999999999743221 1 22368999999876543 24578999999999999988775
No 53
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.81 E-value=0.16 Score=51.32 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=49.4
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++|||+|++||++....+ ++ ...++++|.||.++.... ...++.|.+|+..+|++|.+.|.
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~~~--~~---~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYSEF--LP---KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHHhc--CC---CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 456678899999999999743211 11 123578999998876543 24578899999999999988775
No 54
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.79 E-value=0.16 Score=51.16 Aligned_cols=70 Identities=11% Similarity=0.260 Sum_probs=50.6
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+++.-........ ...+.++|.||.++.... ...++.|.+|+..+|+.|++.|.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISS--FAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCccc--cCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence 45567889999999999976433222211 234567899998876543 23578999999999999998774
No 55
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.78 E-value=0.15 Score=51.10 Aligned_cols=70 Identities=11% Similarity=0.248 Sum_probs=50.8
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+++.-.-...... ...+.++|.||.++.... ...++.|.||+..+|+.|.+.+.
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 337 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKLAS--FAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQ 337 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 35567889999999999976433222211 234568999998876533 34589999999999999998775
No 56
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.77 E-value=0.15 Score=51.24 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=51.0
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+.+.......... ...+.++|.||.++.... ...++.|.||+..+|++|.+.|.
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSL--YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR 347 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--cCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence 45667889999999999987655433311 234578999998875432 22368899999999999988764
No 57
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.76 E-value=0.15 Score=51.51 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=51.2
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|+||+++........... ...+.++|.||.++.... ...++.|.||+.++|+.|.+.+.
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 352 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAHF-ASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQ 352 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhc-CCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 355678899999999999875543221111 123478999998876543 24589999999999999988763
No 58
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.76 E-value=0.13 Score=51.81 Aligned_cols=72 Identities=26% Similarity=0.264 Sum_probs=51.0
Q ss_pred HHHHHhhcCCEEEEEccCCChhhccc-chHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACN-LPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~-L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|+|||++.-..... ........++++|.||.++.... ...++.|.||+..+|+.|.+.|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 34567889999999999986432210 00011234678999998876543 34689999999999999998885
No 59
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.75 E-value=0.14 Score=51.70 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=52.0
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHccc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 176 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~~ 176 (266)
.+...+.+|||+|+|||.+.=.... +...+ .... +|-|+.++....+ ..++.|.||+.++|.+|.+.+.-
T Consensus 259 ~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~-~~~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~ 330 (550)
T COG0028 259 AANEALEEADLLLAVGARFDDRVTG-YSGFA-PPAA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP 330 (550)
T ss_pred HHHHHhhcCCEEEEecCCCcccccc-hhhhC-CcCC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh
Confidence 4566788999999999998854444 22122 2222 8999999876654 46899999999999999988753
No 60
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.57 E-value=0.15 Score=51.19 Aligned_cols=70 Identities=24% Similarity=0.252 Sum_probs=50.3
Q ss_pred HHHHHhhcCCEEEEEccCCChhhc---ccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPA---CNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa---~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++|||+|++|+.+.-... ... .....++++|.||.++.... ...++.|.||+..+|.+|++.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGI--DYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccccc--ccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 355678899999999999863211 111 01234678999998876543 24689999999999999998874
No 61
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=93.46 E-value=0.18 Score=50.90 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=49.1
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++|||+|+||+++... .+ ..+.++|.||.++....+ ..++.|.||+..+|.+|.+.|+
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~---~~-----~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD---QF-----LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh---hc-----CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 3556788999999999987532 11 123578999988876543 4679999999999999998885
No 62
>PRK08617 acetolactate synthase; Reviewed
Probab=93.39 E-value=0.17 Score=50.54 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=49.3
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|++|+++.-+...... ...+.++|.||.++...+. ..++.|.+++..+|+.|.+.+.
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence 455688999999999987533322111 1234689999998876543 4589999999999999987664
No 63
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=93.28 E-value=0.2 Score=48.64 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=48.9
Q ss_pred HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+ ++|++|++|+.+.-....... ...++++|.|+.++...+. ..++.|.||+.++|..|.+.+.
T Consensus 270 ~~~~-~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 270 REEL-QPDLVIRFGGPPVSKRLRQWL---ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred hhhC-CCCEEEEeCCCcchhHHHHHH---hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence 3445 899999999998654433321 1245789999998876653 4579999999999999887763
No 64
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.00 E-value=0.3 Score=49.05 Aligned_cols=70 Identities=9% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+++.-........ ...+.++|.||.++.... ...++.|.+|+..+|.+|.+.++
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~ 345 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAY--FAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEG 345 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhh--cCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 35567789999999999986543322211 123467888998876432 24579999999999999988765
No 65
>PRK07064 hypothetical protein; Provisional
Probab=92.89 E-value=0.22 Score=49.51 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=49.6
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+|||+|++|+++.-....... .....+++.||.++.... ...++.|.+++..+|+.|.+.+.
T Consensus 258 ~~~~~~~aDlvl~iG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 258 VEALYKTCDLLLVVGSRLRGNETLKYS---LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHhCCEEEEecCCCCcccccccc---cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 556778999999999998755543321 112347888988876443 34688999999999999988764
No 66
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.79 E-value=0.23 Score=49.98 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=47.7
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++||++....+ ... ...+..+|.||.++.... ...++.|.||+..+|.+|.+.|.
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~~~~---~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPFAEV---SKA-FKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCcccc---ccc-cCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 345678899999999998743222 111 123445588988776543 24578999999999999988775
No 67
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=92.53 E-value=0.29 Score=46.85 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=50.3
Q ss_pred cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
..+|.|.+|-|.+++-.+.+ +.-..+|-||.++. +.-+.+|+.|-||..++++.|.+++.
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 47899999999999887776 23346899999975 55678999999999999999999864
No 68
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=92.42 E-value=0.3 Score=45.86 Aligned_cols=60 Identities=27% Similarity=0.313 Sum_probs=49.5
Q ss_pred cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
..+|.|.+|-|.+++-.+.+ +.-..+|-||.++. +.-+.+|+.|-||..+++++|.+.+.
T Consensus 251 ~P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred CccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 46799999999998887776 23346899999975 45678999999999999999998863
No 69
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=92.33 E-value=0.33 Score=45.63 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=49.7
Q ss_pred cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
..+|.|.+|-|.+++-...+ +.-..+|-||.++. +.-+.+|+.|-||.-++++.|.+.+.
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred CccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 46899999999999887776 23346899999975 55678999999999999999998863
No 70
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=92.25 E-value=0.32 Score=48.81 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=48.0
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+++||++|++|+++... .+ ...+.++|.||.++....+ ..++.|.||+.+++..|.+.+.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~---~~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYR---QF----YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred HHHHHHhCCEEEEECCCCCcc---cc----cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence 456778999999999987532 11 1234689999998866432 4589999999999999988764
No 71
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=91.78 E-value=0.43 Score=44.87 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=50.6
Q ss_pred cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
..||.|.+|-|.+++-.+.| +.-..+|-||.++. |.=+.+|+.|-||.-+++|.|.++|+
T Consensus 251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 47899999999999888776 23346899999975 45578999999999999999999875
No 72
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=91.46 E-value=0.28 Score=48.60 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=51.4
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC-CC--CccEEEECcHHHHHHHHHHHccc
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-DK--KASLVVHAPVDKVIAGVMRHLNL 176 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~-d~--~adl~I~g~~~evl~~L~~~L~~ 176 (266)
.++++||++|++|+-|.-.--..++.. -.+..++|.||..+... .. ..++.|.||+..++.+|.+.|+-
T Consensus 272 ~ALk~ADvvll~GarlnwiLhfG~~Pk-~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~ 343 (571)
T KOG1185|consen 272 LALKKADVVLLAGARLNWILHFGLPPK-WSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQD 343 (571)
T ss_pred HHHhhCCEEEEecceeeEEEecCCCCc-cCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcC
Confidence 357899999999998875333333221 35678888888876553 22 56899999999999999999873
No 73
>PLN02573 pyruvate decarboxylase
Probab=89.61 E-value=0.54 Score=47.46 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+++.-........ ...+.++|.||.++.......++.+. ++..++..|.+.|.
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSL--LLKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK 352 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCcccccccc--cCCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence 34567789999999999986544322211 12457799999988765443344433 68888888888774
No 74
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=89.46 E-value=0.62 Score=46.31 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=48.6
Q ss_pred hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCccEEEECcHHHHHHHHHHHcc
Q 024533 103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~adl~I~g~~~evl~~L~~~L~ 175 (266)
..+.+.+++||++|++|+++.-+........ ...+.++|.||.++.... ...++.|.|++..++++|.+.|.
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPGPH-LPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCcccc-CCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 3455678899999999997422211111101 123578899998876532 23568899999999999998875
No 75
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.43 E-value=0.92 Score=45.34 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=43.8
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHH
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAG 169 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~ 169 (266)
.+.+.+++||++|++|+++..... ...+.++|.||.++.... ...++.|.|++..+|..
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~~-------~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 312 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVNF-------LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNI 312 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhhc-------CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHH
Confidence 355677899999999999854321 123568999999886643 34689999999999953
No 76
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=89.36 E-value=0.41 Score=47.36 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHHhhcCCEEEEEccCCCh-hh-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQI-TP-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+.++|++|++|+-... .| .......|+++|+++|.|++..+.....+|++|.
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 4567899999999998655 23 2233345788999999999999998888888764
No 77
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.07 E-value=0.9 Score=44.38 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=41.4
Q ss_pred HHHhhcCCEEEEEccCCChh-h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
...+.+||++|++|+-.... | .......++++|+++|.||+..+.....+|.+|.
T Consensus 165 ~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~ 221 (461)
T cd02750 165 SADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVP 221 (461)
T ss_pred hhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEec
Confidence 45678899999999976553 2 1122234778999999999999998888888764
No 78
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=88.33 E-value=1.1 Score=44.35 Aligned_cols=70 Identities=24% Similarity=0.220 Sum_probs=53.4
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
|...+.+|||+|-|||-++=.-..+-.. ....+.+++.||-++-..-+...+-+-+|+...|.+|...|+
T Consensus 289 AN~~A~~ADlVigiGTR~~DFTTgS~al-F~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~ 358 (617)
T COG3962 289 ANRAAEEADLVIGIGTRLQDFTTGSKAL-FKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALG 358 (617)
T ss_pred HHhhhhhcCEEEEecccccccccccHHH-hcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhc
Confidence 4556678999999999987655444321 245788899999888665555668889999999999988874
No 79
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=88.21 E-value=1.3 Score=43.69 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=59.7
Q ss_pred cccEEEcCCCCChhc---hhHHHHHhhcCCEEEEEccCCChhhcccc---------hHHHhcCCCEEEEECCCCCC-C--
Q 024533 87 KDTVLDWEDALPPVE---MNPAEENCRMADVVLCLGTSLQITPACNL---------PLKSLRGGGKIVIVNLQQTP-K-- 151 (266)
Q Consensus 87 rP~Vv~FgE~lp~~~---~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L---------~~~a~~~g~~lViIN~~~t~-~-- 151 (266)
+-||++=+-.+|.+. +++....+++.|+.||+|..=.|.|+++- |-.-..+-..++++++.-.+ +
T Consensus 354 HMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAG 433 (462)
T PRK09444 354 HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAG 433 (462)
T ss_pred cceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCC
Confidence 458898888888763 55566678899999999999999888742 21111112234555554332 1
Q ss_pred ------CCCccEEEECcHHHHHHHHHHHc
Q 024533 152 ------DKKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 152 ------d~~adl~I~g~~~evl~~L~~~L 174 (266)
-+..+..+.||+.+.+.+|.+.+
T Consensus 434 v~NpLF~~~nt~MlfGDAK~~~~~l~~~~ 462 (462)
T PRK09444 434 VQNPLFFKENTQMLFGDAKASVDAILKAL 462 (462)
T ss_pred CCCcceecCCceEEeccHHHHHHHHHHhC
Confidence 13456788999999999987653
No 80
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=88.15 E-value=0.67 Score=46.60 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=42.2
Q ss_pred HHHhhcCCEEEEEccCCChh-h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
...+.+||++|++|+..... | .......++++|+++|.|++..+.....+|.+|.
T Consensus 154 ~~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ 210 (567)
T cd02765 154 ITDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP 210 (567)
T ss_pred HhHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence 44567999999999986553 2 2233345778999999999999998888888764
No 81
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=88.08 E-value=0.96 Score=44.30 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=41.0
Q ss_pred HHhhcCCEEEEEccCCChh-h--cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 107 ENCRMADVVLCLGTSLQIT-P--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~-P--a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
..+.+||++|++|+-.... | .......++++|+++|.||+..+.....+|.+|.
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 4567999999999976553 2 2222234667899999999999988888888875
No 82
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=88.01 E-value=0.39 Score=47.85 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=46.0
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+++.-......... . ...++|-||.++....+ ..++.| +|+..+|.+|.+.++
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~-~-~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQ-L-TPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG 335 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeecc-C-CcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence 456678899999999999865433222111 1 12468888887654322 235556 899999999988774
No 83
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=87.53 E-value=0.65 Score=45.87 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=55.4
Q ss_pred ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-----
Q 024533 88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP----- 150 (266)
Q Consensus 88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~----- 150 (266)
-||++=+-.+|.+ ++++....++++|+.||+|..=.|.|+++ ||-.-..+-..+|++++.-.+
T Consensus 356 MNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv 435 (463)
T PF02233_consen 356 MNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGV 435 (463)
T ss_dssp HHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-
T ss_pred ceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCC
Confidence 5777777778876 46667778999999999999999977653 442222233457777776443
Q ss_pred ----CCCCccEEEECcHHHHHHHHHHHc
Q 024533 151 ----KDKKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 151 ----~d~~adl~I~g~~~evl~~L~~~L 174 (266)
+.+..+..+.||+.+.+.++.+++
T Consensus 436 ~NpLF~~~nt~MlfGDAk~~~~~l~~~~ 463 (463)
T PF02233_consen 436 DNPLFYKDNTRMLFGDAKKTLEELVAEL 463 (463)
T ss_dssp S-GGGGSTTEEEEES-HHHHHHHHHHHH
T ss_pred CCcceecCCcEEEeccHHHHHHHHHHhC
Confidence 124567889999999999998764
No 84
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=86.65 E-value=1.5 Score=43.24 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=40.9
Q ss_pred HHHhhcCCEEEEEccCCChh-h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
...+.++|++|++|+..... | .......++++|+++|.|++..+.....+|.+|.
T Consensus 151 ~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 151 IADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 34567999999999976442 2 1122234678899999999999988778888875
No 85
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=86.12 E-value=0.43 Score=30.55 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=21.7
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
+..+|..||+.|...... .. .....|| .||+.++
T Consensus 4 Y~y~C~~Cg~~fe~~~~~---~~-~~~~~CP--~Cg~~~~ 37 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKI---SD-DPLATCP--ECGGDVR 37 (41)
T ss_pred EEEEcCCCCCEEEEEEec---CC-CCCCCCC--CCCCcce
Confidence 456899999987533211 11 3356798 9998654
No 86
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=86.02 E-value=1.8 Score=43.95 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=31.7
Q ss_pred HHHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCC
Q 024533 106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t 149 (266)
.+.+.+||++|++|+-... .|. ......|+++|+++|.||+..+
T Consensus 158 ~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 158 LEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 4567789999999996543 231 1222457789999999999765
No 87
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=86.01 E-value=1.8 Score=43.41 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=43.8
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHH
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAG 169 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~ 169 (266)
+.+.+++||++|++|+++.-...... ......++|.||.++..... ..++.|.+++.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQW---LADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHH---HhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 44567899999999999853322221 11223488999998876543 4578999999999887
No 88
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=84.99 E-value=2.1 Score=44.78 Aligned_cols=95 Identities=22% Similarity=0.333 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCc----ccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCCh-hh-cccchHHHhc-CCCEEEEE
Q 024533 72 KTPRRCSDVKCGSR----LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQI-TP-ACNLPLKSLR-GGGKIVIV 144 (266)
Q Consensus 72 ~~~p~Cp~~~Cgg~----lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V-~P-a~~L~~~a~~-~g~~lViI 144 (266)
..+..|.. -|..+ |-++|=.+++.- ..+.+..+|++|+||+.-+= .| ++..+.+|.+ +|.++|.+
T Consensus 385 NNVDncsR-~CqsPa~~gL~rTvG~g~dsg-------si~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~ 456 (978)
T COG3383 385 NNVDNCSR-YCQSPATDGLFRTVGSGADSG-------SIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVI 456 (978)
T ss_pred CCcccchh-hccCcccccchheeeccCCCC-------CHHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEe
Confidence 34556652 46542 445555454443 25677889999999996432 44 2344455665 99999999
Q ss_pred CCCCCCCCCCccEEEECcHHH---HHHHHHHHc
Q 024533 145 NLQQTPKDKKASLVVHAPVDK---VIAGVMRHL 174 (266)
Q Consensus 145 N~~~t~~d~~adl~I~g~~~e---vl~~L~~~L 174 (266)
.+.++.....+|++++-+.+. +|..+++.+
T Consensus 457 D~R~~emaerAdlf~~pkpGtd~a~l~Avakyi 489 (978)
T COG3383 457 DPRKHEMAERADLFLHPKPGTDLAWLTAVAKYI 489 (978)
T ss_pred ccchhHHHHhhhcccCCCCCccHHHHHHHHHHH
Confidence 999999999999999755443 444444443
No 89
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=84.86 E-value=2.6 Score=39.68 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=39.5
Q ss_pred HHHhhcCCEEEEEccCCCh-hhc-ccchHHHh-cCCCEEEEECCCCCCCCCCccEEEECcHH
Q 024533 106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSL-RGGGKIVIVNLQQTPKDKKASLVVHAPVD 164 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~-~~g~~lViIN~~~t~~d~~adl~I~g~~~ 164 (266)
...+.++|++|++|+-... .|. ......+. ++|+++|.|++..+.. .+|.++.-...
T Consensus 143 ~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg 202 (386)
T cd02768 143 IAEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPL 202 (386)
T ss_pred HHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCc
Confidence 3467799999999997654 332 22223443 4599999999999887 67777764444
No 90
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.76 E-value=0.92 Score=44.18 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=39.6
Q ss_pred HhhcCCEEEEEccCCChh---hcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQIT---PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~---Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+-.... |.......++++|+++|.|++..+.....+|.+|.
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~ 208 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP 208 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence 456899999999976543 21222235677899999999999988778888764
No 91
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=84.55 E-value=0.99 Score=48.12 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=45.1
Q ss_pred HHHhhcCCEEEEEccCCChh--hcccchHHHhcCCCEEEEECCCCCCCCCCccEEE--ECcHHHHH
Q 024533 106 EENCRMADVVLCLGTSLQIT--PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV--HAPVDKVI 167 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~--Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I--~g~~~evl 167 (266)
...+.+||++|++|+-.... +.......|+++|+++|.|++..+.....+|++| +-..|-+|
T Consensus 219 ~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~AL 284 (912)
T TIGR03479 219 SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAAL 284 (912)
T ss_pred hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHH
Confidence 44567899999999976542 2334444577899999999999999888888875 33444433
No 92
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=83.80 E-value=2.2 Score=44.24 Aligned_cols=54 Identities=24% Similarity=0.142 Sum_probs=40.0
Q ss_pred HHhhcCCEEEEEccCCCh--hhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 107 ENCRMADVVLCLGTSLQI--TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V--~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
..+.+||++|++|+.... .|+..-...++++|+++|.||+..+.....+|.+|.
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ 206 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP 206 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence 467789999999985332 233322335677899999999999988777888764
No 93
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=83.66 E-value=2 Score=42.90 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=39.6
Q ss_pred HHhhcCCEEEEEccCCChh-hc-ccchHHHhcC--CCEEEEECCCCCCCCCCccEEEE
Q 024533 107 ENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRG--GGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~-Pa-~~L~~~a~~~--g~~lViIN~~~t~~d~~adl~I~ 160 (266)
..+.+||++|++|+-.... |. ......++++ |+++|.|++..+.....+|.+|.
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~ 210 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLP 210 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeC
Confidence 4567999999999986542 21 1222345556 99999999999998777887764
No 94
>PRK09939 putative oxidoreductase; Provisional
Probab=83.48 E-value=1.9 Score=45.20 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=31.9
Q ss_pred HHHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCCC
Q 024533 106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTP 150 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t~ 150 (266)
.+.+.+||++|++|+-... .|. ......++++|+++|.||+-.+.
T Consensus 203 l~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~ 249 (759)
T PRK09939 203 LEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQER 249 (759)
T ss_pred HHHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 3457899999999997544 332 12223467899999999997653
No 95
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=83.37 E-value=0.55 Score=30.89 Aligned_cols=34 Identities=29% Similarity=0.674 Sum_probs=21.7
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC-cc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS-RL 86 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg-~l 86 (266)
++..+|.+||+.+..-. .+.. .....|| .||+ .+
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~-~~~~~CP--~Cg~~~~ 37 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---SISE-DDPVPCP--ECGSTEV 37 (42)
T ss_pred CEEEEeCCCCCEEEEEE---EcCC-CCCCcCC--CCCCCce
Confidence 35678999998774321 1222 3456798 9998 44
No 96
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=83.01 E-value=1.2 Score=44.27 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=40.7
Q ss_pred HHHhhcCCEEEEEccCCChh-hcc-------cchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQIT-PAC-------NLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-Pa~-------~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
...+.+||++|++|+-.... |.. .....++++|+++|.|++..+.....+|.+|.
T Consensus 151 ~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ 213 (539)
T cd02762 151 VPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLF 213 (539)
T ss_pred chhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeC
Confidence 34568899999999976553 211 12334678999999999999988778888764
No 97
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=83.00 E-value=1.9 Score=43.93 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=39.7
Q ss_pred HHhhcCCEEEEEccCCChh-hc-ccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 107 ENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~-Pa-~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
..+.+||++|++|+-.... |. ......|+++|+++|.|++..+.....+|.+|.
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~ 206 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIP 206 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccC
Confidence 4678899999999975442 21 222345677999999999999887777777663
No 98
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=82.94 E-value=2.3 Score=45.98 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=41.0
Q ss_pred HHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 107 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
..+.+||++|++|+-... .|. ......|+++|+++|.||+..+.....+|++|.
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~ 272 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAP 272 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeC
Confidence 457789999999997554 332 223345778999999999999988788887764
No 99
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=82.68 E-value=1.5 Score=45.81 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=38.6
Q ss_pred hhcCCEEEEEccCCChh----------hcccchHHHhcCCCEEEEECCCCCCCCCCc-cEEE
Q 024533 109 CRMADVVLCLGTSLQIT----------PACNLPLKSLRGGGKIVIVNLQQTPKDKKA-SLVV 159 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~----------Pa~~L~~~a~~~g~~lViIN~~~t~~d~~a-dl~I 159 (266)
+.+||++|+.|+...+. +.......++++|+++|.|++..|.....+ |++|
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l 226 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWI 226 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEe
Confidence 67899999999986553 222333457789999999999999877654 6765
No 100
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.55 E-value=1.8 Score=44.03 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.7
Q ss_pred HHHhhcCCEEEEEccCCChhhc-----ccchHHHhcCCCEEEEECCCCCCCCC-CccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQITPA-----CNLPLKSLRGGGKIVIVNLQQTPKDK-KASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa-----~~L~~~a~~~g~~lViIN~~~t~~d~-~adl~I~ 160 (266)
...+.+||++|+.|+-....-. ......|+++|+++|.|++..+.... .+|++|.
T Consensus 161 ~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~ 221 (617)
T cd02770 161 LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIP 221 (617)
T ss_pred HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEEC
Confidence 3466789999999997654321 22334577899999999999998774 7887764
No 101
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=82.44 E-value=3.6 Score=31.25 Aligned_cols=44 Identities=25% Similarity=0.558 Sum_probs=33.8
Q ss_pred ceeEeeeccCCCCCCCCCceEEEee----cCCCCcchhccccCCCceEEeeec
Q 024533 205 KWALRVGSVHRPKAPSPFVQSVEVS----FSDRPDLKTAILNKQPFKLKRRKQ 253 (266)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 253 (266)
+|++-+.+.++. ....++++|+.. |.+ | -++++++||.+.++.-
T Consensus 3 ~W~v~Vr~~~~~-d~~~~i~kV~f~LHpsF~~-p---~r~v~~pPFevte~GW 50 (84)
T PF03366_consen 3 KWTVYVRGLDNE-DLSYFIKKVTFKLHPSFPN-P---VRVVTKPPFEVTETGW 50 (84)
T ss_dssp EEEEEEEECCCT---TTTEEEEEEES-TTSSS-----EEECSSTTEEEEEEES
T ss_pred EEEEEEEeCCCC-CccceEEEEEEECCCCCCC-C---ceEecCCCCEEEEeEe
Confidence 699999999888 589999999985 444 1 3589999999988753
No 102
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=81.84 E-value=1.7 Score=40.41 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=38.7
Q ss_pred HHHhhcCCEEEEEccCCChh-hc-ccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533 106 EENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV 159 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-Pa-~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I 159 (266)
...+.+||++|++|+-.... |. ......++++|+++|.|++..+.....+|.+|
T Consensus 151 ~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i 206 (374)
T cd00368 151 LADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWL 206 (374)
T ss_pred HHHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEee
Confidence 34567899999999976542 22 22223456789999999999988766677765
No 103
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=81.17 E-value=3.5 Score=43.29 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=41.7
Q ss_pred HHHhhcCCEEEEEccCCChh--h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQIT--P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~--P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
...+.+||++|++|+-.... | .......++++|+++|.|++..+.....+|.+|.
T Consensus 168 ~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlp 225 (760)
T cd02760 168 AADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVP 225 (760)
T ss_pred cchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeC
Confidence 34677899999999987543 2 1223345677899999999999998888888864
No 104
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=80.01 E-value=4.1 Score=42.58 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=32.0
Q ss_pred HHHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCCC
Q 024533 106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTP 150 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t~ 150 (266)
.+.+.+||++|++|+-... .|. ......|+++|+++|.||+-.+.
T Consensus 193 ~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 193 LEDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred HhHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 3467789999999997543 231 12224578899999999997654
No 105
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.69 E-value=2.6 Score=43.47 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=40.5
Q ss_pred HHHhhcCCEEEEEccCCCh-hhc-ccchHHHhcC-CCEEEEECCCCCCCCCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRG-GGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~-g~~lViIN~~~t~~d~~adl~I~ 160 (266)
...+++||++|++|+-... .|. ..-...|+++ |+++|.|++..+.....+|+.+.
T Consensus 164 ~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 164 WNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVP 221 (649)
T ss_pred HHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeC
Confidence 4467889999999998654 442 2222345655 99999999999998777887764
No 106
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.15 E-value=3.5 Score=41.13 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=38.8
Q ss_pred HhhcCCEEEEEccCCChh--hcc--cchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQIT--PAC--NLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~--Pa~--~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+..... +.. .-...++++|+++|.|++..+.....+|.+|.
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~ 215 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLP 215 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeC
Confidence 567899999999875432 211 11223567899999999999988777888874
No 107
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.57 E-value=2.5 Score=44.20 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=39.2
Q ss_pred HHhhcCCEEEEEccCCChh-h-----cccchHHHh-cCCCEEEEECCCCCCCC---CCccEEEE
Q 024533 107 ENCRMADVVLCLGTSLQIT-P-----ACNLPLKSL-RGGGKIVIVNLQQTPKD---KKASLVVH 160 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~-P-----a~~L~~~a~-~~g~~lViIN~~~t~~d---~~adl~I~ 160 (266)
..+.+||++|++|+..... | +..+. .|+ ++|+++|.|++..+... ..+|++|.
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~-~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlp 269 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLA-EARTEGNFKYVVVDPVLPNTTSAAGENIRWVP 269 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHH-HHHHhCCCEEEEECCCCCccccccccCCEEEC
Confidence 4667899999999987652 2 22332 344 47999999999998876 77888764
No 108
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=78.30 E-value=0.45 Score=40.18 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=51.9
Q ss_pred HHHHHHHHHHH----cCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC
Q 024533 4 ITHMALVELEK----AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD 79 (266)
Q Consensus 4 ~~H~aLa~L~~----~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~ 79 (266)
.+|+-+-..-. .|+....+-|.||||--..-.+ -.+--.-|+.+..+|. |+..|.+.-........+ .-+|.
T Consensus 69 LaHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~-~~~~~v~~~~~~Y~C~-C~q~~l~~RRhn~~~~g~-~YrC~- 144 (156)
T COG3091 69 LAHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQ-FEVQSVRRTTYPYRCQ-CQQHYLRIRRHNTVRRGE-VYRCG- 144 (156)
T ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccch-HHHhhccccceeEEee-cCCccchhhhcccccccc-eEEec-
Confidence 35665555443 2566678899999997666432 2455567889999999 998876543333332222 56898
Q ss_pred CCCCCccc
Q 024533 80 VKCGSRLK 87 (266)
Q Consensus 80 ~~Cgg~lr 87 (266)
+|+|.|+
T Consensus 145 -~C~gkL~ 151 (156)
T COG3091 145 -KCGGKLV 151 (156)
T ss_pred -cCCceEE
Confidence 8999875
No 109
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=78.27 E-value=4 Score=42.44 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred HhhcCCEEEEEccCCCh-hhcc--cchHHHh-cCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQI-TPAC--NLPLKSL-RGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V-~Pa~--~L~~~a~-~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+-... .|.. .....++ ++|+++|.|++..+.....+|.+|.
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~ 249 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHA 249 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeec
Confidence 55789999999987654 3432 2223455 7899999999999998888888774
No 110
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=77.78 E-value=1.7 Score=27.46 Aligned_cols=34 Identities=29% Similarity=0.634 Sum_probs=21.7
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 86 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~l 86 (266)
...|.+|+..|..+.. .+..+....+|+ +||..+
T Consensus 2 ~~~CP~C~~~~~v~~~--~~~~~~~~v~C~--~C~~~~ 35 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDS--QLGANGGKVRCG--KCGHVW 35 (38)
T ss_pred EEECCCCCCEEEeCHH--HcCCCCCEEECC--CCCCEE
Confidence 3689999998865532 222222235798 899765
No 111
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=77.73 E-value=4 Score=41.45 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=40.8
Q ss_pred HhhcCCEEEEEccCCChh-h----------cccchHHHhcCCCEEEEECCCCCCCCCCcc-EE--EECcHHHHH
Q 024533 108 NCRMADVVLCLGTSLQIT-P----------ACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-LV--VHAPVDKVI 167 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~-P----------a~~L~~~a~~~g~~lViIN~~~t~~d~~ad-l~--I~g~~~evl 167 (266)
.+.+||++|+.|+-.... | .......++++|+++|.|++..+.....+| ++ |+=..|-+|
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~add~~l~irPGTD~AL 240 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELGAEWIAIRPGTDVAL 240 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhcCcEeccCCCcHHHH
Confidence 457999999999975542 1 112233577899999999999998766664 44 444444433
No 112
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=76.62 E-value=5.8 Score=38.25 Aligned_cols=74 Identities=16% Similarity=0.327 Sum_probs=55.8
Q ss_pred cccEEEcCCCCChhc--hhHHHHHh--hcCCEEEEEccCCChhhcccchHHHh--cCCCEEEEECCCCCCCCCCccEEEE
Q 024533 87 KDTVLDWEDALPPVE--MNPAEENC--RMADVVLCLGTSLQITPACNLPLKSL--RGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 87 rP~Vv~FgE~lp~~~--~~~a~~~~--~~aDLlLvlGTSL~V~Pa~~L~~~a~--~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
-|.-+.|-+.+|.+. -..+.+.+ +++|..||+||- |.+.+|..+. -...|+|.|++-+++....+|++|.
T Consensus 306 Ypf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sD----p~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVviP 381 (429)
T COG1029 306 YPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASD----PGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVIP 381 (429)
T ss_pred CceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecC----ccccChHHHHHHhhcCCEEEecCCCCcchhhcceecc
Confidence 477888888887532 12344444 569999999985 6688887653 4678999999999999988999887
Q ss_pred CcHH
Q 024533 161 APVD 164 (266)
Q Consensus 161 g~~~ 164 (266)
+-++
T Consensus 382 ~aI~ 385 (429)
T COG1029 382 SAID 385 (429)
T ss_pred ccee
Confidence 7655
No 113
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=76.40 E-value=1.7 Score=41.34 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=40.4
Q ss_pred HHHHhhcCCEEEEEccCCChhhc---ccchHHHhcCCCEEEEECCCCCCCCCCccEEE--ECcHHHHH
Q 024533 105 AEENCRMADVVLCLGTSLQITPA---CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV--HAPVDKVI 167 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa---~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I--~g~~~evl 167 (266)
....+.+||++|++|+....... ..+...++++|+++|.|++..+.....+|.+| +-..|-.|
T Consensus 105 ~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al 172 (432)
T PF00384_consen 105 PLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAAL 172 (432)
T ss_dssp HHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHH
T ss_pred ccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHh
Confidence 34478899999999997554221 23444567889999999999998666677665 44444444
No 114
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=75.98 E-value=2.1 Score=35.92 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=21.0
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
....+|.+||+...... ....|.|| +||+.
T Consensus 110 ~G~l~C~~Cg~~~~~~~-------~~~l~~Cp--~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEVELTH-------PERLPPCP--KCGHT 139 (146)
T ss_pred CceEecccCCCEEEecC-------CCcCCCCC--CCCCC
Confidence 45679999998764331 23478899 89864
No 115
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=75.57 E-value=2.3 Score=42.49 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=42.8
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L 174 (266)
.+.+.+++||++|++|+++.-+....- .....+.++|.|+.++..... ..++.| +++.+.|.+|++.+
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~--~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVS--QRKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCcccccccccc--cccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 455678899999999999865422111 011224578888877654332 345666 56777777776654
No 116
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=75.33 E-value=2.4 Score=28.19 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=19.8
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
...+|.+||.++..+.. ...-+|| .||+.
T Consensus 2 ~~y~C~~CG~~~~~~~~-------~~~~~Cp--~CG~~ 30 (46)
T PRK00398 2 AEYKCARCGREVELDEY-------GTGVRCP--YCGYR 30 (46)
T ss_pred CEEECCCCCCEEEECCC-------CCceECC--CCCCe
Confidence 35789999998754421 1145898 89974
No 117
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=74.61 E-value=1.8 Score=29.33 Aligned_cols=31 Identities=19% Similarity=0.573 Sum_probs=19.7
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 84 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg 84 (266)
+..+|.+|+..|.... .+.. .....|| .||+
T Consensus 4 Yey~C~~Cg~~fe~~~---~~~~-~~~~~CP--~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQ---KMSD-DPLATCP--ECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEE---ecCC-CCCCCCC--CCCC
Confidence 4568999999775321 1111 2345798 8997
No 118
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=74.25 E-value=4.6 Score=42.52 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHhhcCCEEEEEccCCCh-hhc--ccchHHHhcCCCEEEEECCCCCCC-CCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQI-TPA--CNLPLKSLRGGGKIVIVNLQQTPK-DKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa--~~L~~~a~~~g~~lViIN~~~t~~-d~~adl~I~ 160 (266)
...+.++|++|++|+-... .|. ..+...++++|+++|.||+..+.. .+.+|.++.
T Consensus 371 ~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~ 429 (797)
T PRK07860 371 YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLR 429 (797)
T ss_pred HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceec
Confidence 4467789999999997665 442 233223356899999999988763 445566553
No 119
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=74.01 E-value=5.3 Score=31.28 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=45.1
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEECcHH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHAPVD 164 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g~~~ 164 (266)
.+.+-|++|++.-|....-.....+.|+++|+++|.|--. .++..+.+|+.|.....
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVE 101 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCCC
Confidence 4567899999999999888888888899999998877554 45667778888766543
No 120
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=73.57 E-value=4.7 Score=37.34 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=47.3
Q ss_pred CCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 112 ADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 112 aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
..|.|.+|-|.+++-.+.| +...-++-||.++. +.=.-+|+.|.||.=+++++|.++|+
T Consensus 275 PeLYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 275 PELYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred cceEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 4589999999998887776 23345788999975 44467899999999999999998875
No 121
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=73.38 E-value=3.1 Score=35.95 Aligned_cols=36 Identities=31% Similarity=0.714 Sum_probs=26.5
Q ss_pred CCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccc
Q 024533 45 GNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 88 (266)
Q Consensus 45 Gnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP 88 (266)
.+-....|..|+..|..+...+ ..-.|| .||+.|..
T Consensus 113 ~~~~~Y~Cp~C~~rytf~eA~~------~~F~Cp--~Cg~~L~~ 148 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFDEAME------YGFRCP--QCGEMLEE 148 (178)
T ss_pred cCCCEEECCCCCcEEeHHHHhh------cCCcCC--CCCCCCee
Confidence 3334578999999998775432 256899 99999865
No 122
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=73.35 E-value=8.5 Score=38.98 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=38.6
Q ss_pred Hhh-cCCEEEEEccCCChh-hcc---------cchHHHhcCCCEEEEECCCCCCCCC-CccEEEE
Q 024533 108 NCR-MADVVLCLGTSLQIT-PAC---------NLPLKSLRGGGKIVIVNLQQTPKDK-KASLVVH 160 (266)
Q Consensus 108 ~~~-~aDLlLvlGTSL~V~-Pa~---------~L~~~a~~~g~~lViIN~~~t~~d~-~adl~I~ 160 (266)
.+. +||++|+.|+..... |.. .....++++|+++|.|++..+.... .+|++|.
T Consensus 165 D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ 229 (609)
T cd02751 165 DIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIP 229 (609)
T ss_pred hHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEEC
Confidence 444 599999999875442 211 2334567899999999999998875 6888764
No 123
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=72.76 E-value=5.7 Score=38.36 Aligned_cols=87 Identities=24% Similarity=0.338 Sum_probs=59.9
Q ss_pred cccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc--------chHHHhcCCCEEEEECCCC--CC---
Q 024533 87 KDTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN--------LPLKSLRGGGKIVIVNLQQ--TP--- 150 (266)
Q Consensus 87 rP~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~--------L~~~a~~~g~~lViIN~~~--t~--- 150 (266)
+-||++=+-..|.+ ++++..+...++|++||+|.-=.|.|+++ +|-. .-.+++.+++++.. +.
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiL-eV~KAk~viv~KRsM~sGyAG 434 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVL-EVWKAKTVIVFKRSMNSGYAG 434 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccCCCCcCCCcee-eeeccceEEEEeccccccccc
Confidence 45788877778865 46667778899999999999999988764 3311 11234555555543 11
Q ss_pred CC-----CCccEEEECcHHHHHHHHHHHc
Q 024533 151 KD-----KKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 151 ~d-----~~adl~I~g~~~evl~~L~~~L 174 (266)
.| +..+..+.||+.+..+++.+.|
T Consensus 435 v~N~LFy~d~T~MlFGDAKk~V~~i~k~l 463 (463)
T COG1282 435 VQNPLFYKDNTMMLFGDAKKSVDEILKAL 463 (463)
T ss_pred cCCcceeccCcEEEeccHHHHHHHHHhcC
Confidence 12 3456788999999999998764
No 124
>PRK13937 phosphoheptose isomerase; Provisional
Probab=72.53 E-value=6.3 Score=33.82 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=44.6
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE-CCCCCCCCCCccEEEECcH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPV 163 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI-N~~~t~~d~~adl~I~g~~ 163 (266)
.+.+-|++|++-.|....-.......++++|+++|.| +...++..+.+|+.|.-..
T Consensus 103 ~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~ 159 (188)
T PRK13937 103 LGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPS 159 (188)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 4577899999999998888888888899999998888 5556667777888776444
No 125
>PRK06260 threonine synthase; Validated
Probab=72.44 E-value=2.6 Score=40.54 Aligned_cols=30 Identities=33% Similarity=0.671 Sum_probs=20.9
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
|...+|..||++|..+. ...+|| .|||.|.
T Consensus 1 ~~~~~C~~cg~~~~~~~---------~~~~Cp--~cg~~l~ 30 (397)
T PRK06260 1 MYWLKCIECGKEYDPDE---------IIYTCP--ECGGLLE 30 (397)
T ss_pred CCEEEECCCCCCCCCCC---------ccccCC--CCCCeEE
Confidence 45689999999985331 235798 8987643
No 126
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=72.41 E-value=5.6 Score=40.33 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=38.1
Q ss_pred HHHhhcCCEEEEEccCCCh-hhcc-cchHHHhcCC-CEEEEECCCCCCCCCCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQI-TPAC-NLPLKSLRGG-GKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa~-~L~~~a~~~g-~~lViIN~~~t~~d~~adl~I~ 160 (266)
...+.++|++|++|+-... .|.. .....+.++| +++|.||+..+.....+|.++.
T Consensus 357 ~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~ 414 (603)
T TIGR01973 357 LADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLV 414 (603)
T ss_pred HHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhcccee
Confidence 3456789999999997644 3322 1123344444 8999999999888777777664
No 127
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=72.31 E-value=5 Score=41.89 Aligned_cols=55 Identities=7% Similarity=0.117 Sum_probs=39.3
Q ss_pred HHHhhcCCEEEEEccCCChh-h----c-ccchHHHhcCCCEEEEECCCCCCCC-CCccEEEE
Q 024533 106 EENCRMADVVLCLGTSLQIT-P----A-CNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVH 160 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-P----a-~~L~~~a~~~g~~lViIN~~~t~~d-~~adl~I~ 160 (266)
...+.+||++|++|+..... | . ..+...++++|+++|.|++..+... ..+|.+|.
T Consensus 209 ~~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~ 270 (797)
T TIGR02166 209 LDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIP 270 (797)
T ss_pred HHHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEEC
Confidence 35678899999999986653 2 1 1232233468999999999998864 46888764
No 128
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=72.26 E-value=3.4 Score=34.95 Aligned_cols=38 Identities=29% Similarity=0.577 Sum_probs=27.1
Q ss_pred EcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 42 ELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 42 ElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
+-..+-....|..|+..|..+..++ ..-.|| .||+.|.
T Consensus 102 ~~e~~~~~Y~Cp~c~~r~tf~eA~~------~~F~Cp--~Cg~~L~ 139 (158)
T TIGR00373 102 EFETNNMFFICPNMCVRFTFNEAME------LNFTCP--RCGAMLD 139 (158)
T ss_pred hhccCCCeEECCCCCcEeeHHHHHH------cCCcCC--CCCCEee
Confidence 3444455678999999998776543 246899 9999853
No 129
>PRK11032 hypothetical protein; Provisional
Probab=72.12 E-value=2.6 Score=35.94 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=20.3
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
....|.+||+..... ....+|.|| +||+.
T Consensus 123 G~LvC~~Cg~~~~~~-------~p~~i~pCp--~C~~~ 151 (160)
T PRK11032 123 GNLVCEKCHHHLAFY-------TPEVLPLCP--KCGHD 151 (160)
T ss_pred ceEEecCCCCEEEec-------CCCcCCCCC--CCCCC
Confidence 457899999876332 123578899 89863
No 130
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=71.32 E-value=9.1 Score=36.14 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=33.3
Q ss_pred HHHhhcCCEEEEEccCCCh-hhcc--cchHHHhcCCCEEEEECCCCCCCCCCcc
Q 024533 106 EENCRMADVVLCLGTSLQI-TPAC--NLPLKSLRGGGKIVIVNLQQTPKDKKAS 156 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa~--~L~~~a~~~g~~lViIN~~~t~~d~~ad 156 (266)
...+.+||++|++|+-... .|.. ++...++++|++++.|++..+.....++
T Consensus 140 ~~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~ 193 (375)
T cd02773 140 IAGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDH 193 (375)
T ss_pred HHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhcc
Confidence 3457889999999997743 3432 2222234568999999988765433333
No 131
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=70.92 E-value=5 Score=33.77 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=43.2
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE-CCCCCCCCCCccEEEECcH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPV 163 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI-N~~~t~~d~~adl~I~g~~ 163 (266)
.+.+-|++|++.-|........+...|+++|+++|.| +...++..+.+|+.+....
T Consensus 69 ~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~ 125 (179)
T TIGR03127 69 SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPA 125 (179)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCC
Confidence 4567899999999998888888888899999998888 4455666666777665433
No 132
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=70.40 E-value=10 Score=35.98 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=36.0
Q ss_pred Hh-hcCCEEEEEccCCChh-hcc--cchH-------HHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NC-RMADVVLCLGTSLQIT-PAC--NLPL-------KSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~-~~aDLlLvlGTSL~V~-Pa~--~L~~-------~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+ .++|++|++|+-.... |.. ++.. .+.++|+++|.|++..+.....+|.+|.
T Consensus 127 di~~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~ 190 (415)
T cd02761 127 EVKNRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQ 190 (415)
T ss_pred HHHhcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEe
Confidence 44 4799999999876553 321 1101 1124788999999999888777787764
No 133
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=70.37 E-value=9 Score=32.21 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=44.3
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE-CCCCCCCCCCccEEEECc
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAP 162 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI-N~~~t~~d~~adl~I~g~ 162 (266)
.+.+-|++|++-.|....-.-.....|+++|+++|.| |....+..+.+|+.|.-.
T Consensus 98 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 98 LGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 4577899999999998888878878899999998888 556677777888877543
No 134
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=70.26 E-value=7.2 Score=40.97 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=39.6
Q ss_pred HHHhhcCCEEEEEccCCChh-hc----ccchHHHh-cCCCEEEEECCCCCCCC-CCccEEEEC
Q 024533 106 EENCRMADVVLCLGTSLQIT-PA----CNLPLKSL-RGGGKIVIVNLQQTPKD-KKASLVVHA 161 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-Pa----~~L~~~a~-~~g~~lViIN~~~t~~d-~~adl~I~g 161 (266)
...+.++|++|++|+-..+. |. ......++ ++|+++|.|++..+... ..+|.+|.=
T Consensus 226 ~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~i 288 (814)
T PRK14990 226 PSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPI 288 (814)
T ss_pred HHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECC
Confidence 34567899999999986653 21 11222344 57999999999999875 468887643
No 135
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=70.09 E-value=8.1 Score=36.82 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=32.3
Q ss_pred HHHhhcCCEEEEEccCCCh-hh-cccchHHHhcCCCEEEEECCCCCC
Q 024533 106 EENCRMADVVLCLGTSLQI-TP-ACNLPLKSLRGGGKIVIVNLQQTP 150 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~P-a~~L~~~a~~~g~~lViIN~~~t~ 150 (266)
...+.++|++|++|+.... .| .......++++|+++|.|++..+.
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 4567889999999998642 33 222234567789999999997664
No 136
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=70.04 E-value=3.6 Score=34.19 Aligned_cols=37 Identities=24% Similarity=0.562 Sum_probs=23.7
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 88 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP 88 (266)
...|+.|+..|..+........ ...-.|| .||+.|..
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~-~~~f~Cp--~Cg~~l~~ 135 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDM-DGTFTCP--RCGEELEE 135 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCC-CCcEECC--CCCCEEEE
Confidence 4689999999876543322111 1125798 99988654
No 137
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=68.58 E-value=17 Score=28.73 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=40.1
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcC--CCEEEEECCCCCC------CCCCccEEEECcHHHHHHHHHHHcc
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRG--GGKIVIVNLQQTP------KDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~--g~~lViIN~~~t~------~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.|++.+=..+.+...+..+....++. +++++.-....+. ....+|+++.|..+..+.+|++.+.
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 4677765544444444444444433332 3555554444332 2345789999999999999999874
No 138
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=68.41 E-value=6 Score=43.62 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=44.3
Q ss_pred HhhcCCEEEEEccCCChh--hcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE--CcHHHHH
Q 024533 108 NCRMADVVLCLGTSLQIT--PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH--APVDKVI 167 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~--Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~--g~~~evl 167 (266)
...+++++|+.|+..... |.+.....|+.+|+++|.|++..+...+.+|.+|. -..|-+|
T Consensus 242 D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~AL 305 (1235)
T TIGR01580 242 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAL 305 (1235)
T ss_pred hhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHH
Confidence 345899999999986443 44444456788999999999999988778888764 3344443
No 139
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=68.39 E-value=3.8 Score=26.18 Aligned_cols=30 Identities=40% Similarity=0.933 Sum_probs=19.8
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcc
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 86 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~l 86 (266)
..|.+||+.|...+.-. ...-.|. .||+.|
T Consensus 2 r~C~~Cg~~Yh~~~~pP-----~~~~~Cd--~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP-----KVEGVCD--NCGGEL 31 (36)
T ss_dssp EEETTTTEEEETTTB-------SSTTBCT--TTTEBE
T ss_pred cCcCCCCCccccccCCC-----CCCCccC--CCCCee
Confidence 47999999986554211 1234798 899865
No 140
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=66.55 E-value=8.1 Score=40.77 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=38.0
Q ss_pred HHhhcCCEEEEEccCCCh-hhc--ccchHHH-hcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 107 ENCRMADVVLCLGTSLQI-TPA--CNLPLKS-LRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V-~Pa--~~L~~~a-~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
..+.+||++|++|+.... .|. ..+.... +++|+++|.|++..+.....+|.+|.
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~ 259 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGII 259 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeec
Confidence 456889999999998654 222 2332211 24799999999998887777787764
No 141
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.64 E-value=19 Score=35.65 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=47.6
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhc--CCCEEEEECCCCCCCC-------CCccEEEECcHHHHHHHHHHHc
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKD-------KKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~--~g~~lViIN~~~t~~d-------~~adl~I~g~~~evl~~L~~~L 174 (266)
.+.|++.+-.++.+.+.+..+...+++ .++++|+=...+|... ...|.++.|..++.+.+|++.+
T Consensus 62 ~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 62 HCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 368988776666666666666655443 4888888777776532 2469999999999999999876
No 142
>PRK12496 hypothetical protein; Provisional
Probab=65.47 E-value=4.5 Score=34.44 Aligned_cols=53 Identities=23% Similarity=0.633 Sum_probs=30.8
Q ss_pred EEec--cccchhhhcCCCCCceEEcCCC-----c-ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 21 VISQ--NVDSLHLRSGIPREKLAELHGN-----S-FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 21 viTQ--NIDgLh~kAG~~~~~viElHGn-----l-~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
++|. |+-..-..-|+ ++.-+|+. . ...+|..|++.|+.+. ..-.|| .||..++
T Consensus 94 lvtDD~~~~~vA~~lgi---~v~~~~~~~i~~~~~w~~~C~gC~~~~~~~~---------~~~~C~--~CG~~~~ 154 (164)
T PRK12496 94 LYTDDYGIQNVAKKLNI---KFENIKTKGIKKVIKWRKVCKGCKKKYPEDY---------PDDVCE--ICGSPVK 154 (164)
T ss_pred EECcHHHHHHHHHHcCC---eEeccccccchhheeeeEECCCCCccccCCC---------CCCcCC--CCCChhh
Confidence 4553 33333344566 46666622 2 2356999999885432 123598 8998764
No 143
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=65.43 E-value=12 Score=37.29 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=37.3
Q ss_pred HhhcCCEEEEEccCCChh---hc--ccchHHHhcCC-----CEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQIT---PA--CNLPLKSLRGG-----GKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~---Pa--~~L~~~a~~~g-----~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+..... |. ......++++| .++|.|++..+.....+|.+|.
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~ 255 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLA 255 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceec
Confidence 467899999999987553 21 12212344444 4999999999998878888764
No 144
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=65.32 E-value=9.3 Score=29.78 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=42.4
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC-CCCCCCCCCccEEEECcH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVHAPV 163 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN-~~~t~~d~~adl~I~g~~ 163 (266)
.+.+-|++|++-.|....-.-...+.++.+|+++|.|- ...++..+.+|+.|.-.+
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 36778999999999888877777788899999988654 445566667777776444
No 145
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=64.64 E-value=5.8 Score=41.31 Aligned_cols=54 Identities=20% Similarity=0.339 Sum_probs=39.4
Q ss_pred HHHhhcCCEEEEEccCCCh-hhccc----chHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533 106 EENCRMADVVLCLGTSLQI-TPACN----LPLKSLRGGGKIVIVNLQQTPKDKKASLVV 159 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa~~----L~~~a~~~g~~lViIN~~~t~~d~~adl~I 159 (266)
...+++||++|++|+.... .|... ....++..|+++|.|++..+.....+|.+|
T Consensus 194 ~~D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l 252 (765)
T COG0243 194 YPDIENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWL 252 (765)
T ss_pred HhhHhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCcc
Confidence 3348999999999998777 55333 222345678899999999998766666554
No 146
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=63.59 E-value=6 Score=25.13 Aligned_cols=33 Identities=42% Similarity=0.687 Sum_probs=21.0
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
...|.+|+..|..++.. +..+...-+|+ +||..
T Consensus 2 ~i~Cp~C~~~y~i~d~~--ip~~g~~v~C~--~C~~~ 34 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK--IPPKGRKVRCS--KCGHV 34 (36)
T ss_pred EEECCCCCCEEeCCHHH--CCCCCcEEECC--CCCCE
Confidence 46899999999766432 22222234798 88854
No 147
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=63.55 E-value=11 Score=29.75 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=43.7
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE-CCCCCCCCCCccEEEECcHH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPVD 164 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI-N~~~t~~d~~adl~I~g~~~ 164 (266)
.+.+-|++|++-.|....-.....+.|+++|+++|.| |...++..+.+|+.+.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 3556799999999988877777777889999997766 44455666778888877666
No 148
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=62.80 E-value=4.7 Score=43.19 Aligned_cols=39 Identities=33% Similarity=0.564 Sum_probs=29.8
Q ss_pred EcCCCcce-----eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccccEE
Q 024533 42 ELHGNSFR-----EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVL 91 (266)
Q Consensus 42 ElHGnl~~-----~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~Vv 91 (266)
.|-||++. .+|.+|+..|.+-. ..-+|+ +|||.+-++|-
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~P---------L~G~C~--kCGg~lilTV~ 1043 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRIP---------LVGKCL--KCGNNLTLTVS 1043 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccCC---------CCCccc--ccCCeEEEEEe
Confidence 56799863 68999999986532 234798 89999888874
No 149
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=61.29 E-value=11 Score=39.98 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHhhcCCEEEEEccCCChh-hc--ccchHHHh--cCCCEEEEECCCCCCCCCCccEEEE
Q 024533 107 ENCRMADVVLCLGTSLQIT-PA--CNLPLKSL--RGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~-Pa--~~L~~~a~--~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
..+.++|++|++|+-.... |. ..+. .++ ++|+++|.|++..+.....+|++|.
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~-~a~~~~~GakliviDPr~t~ta~~Ad~~l~ 259 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVT-DRRLSHPKVKVVVLSTFTHRSFDLADIGII 259 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHH-HHHhccCCCEEEEECCCCCchhHHhCeeec
Confidence 4568899999999986542 21 2232 223 4699999999998887777787654
No 150
>PRK04940 hypothetical protein; Provisional
Probab=61.29 E-value=8.6 Score=33.39 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=41.2
Q ss_pred cccEEEc--CCCCChhchhHHHHHhhc----C--CEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC
Q 024533 87 KDTVLDW--EDALPPVEMNPAEENCRM----A--DVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD 152 (266)
Q Consensus 87 rP~Vv~F--gE~lp~~~~~~a~~~~~~----a--DLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d 152 (266)
.|++.+. ....|.+.+....+.+.+ . +=+++|||||-=+-|..| |.+.|.+-|+|||.-.+..
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~L---a~~~g~~aVLiNPAv~P~~ 96 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERI---GFLCGIRQVIFNPNLFPEE 96 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHH---HHHHCCCEEEECCCCChHH
Confidence 5676554 223345555655554431 1 346789999986666665 5568899999999987743
No 151
>PRK07591 threonine synthase; Validated
Probab=60.99 E-value=5.6 Score=38.69 Aligned_cols=29 Identities=28% Similarity=0.572 Sum_probs=21.0
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
+...+|..||++|+.+. . .+|| .|||.|.
T Consensus 16 ~~~l~C~~Cg~~~~~~~---------~-~~C~--~cg~~l~ 44 (421)
T PRK07591 16 AVALKCRECGAEYPLGP---------I-HVCE--ECFGPLE 44 (421)
T ss_pred eeEEEeCCCCCcCCCCC---------C-ccCC--CCCCeEE
Confidence 44589999999986431 2 5798 8988765
No 152
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=60.95 E-value=6.5 Score=25.04 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=21.0
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
..+|.+|+..|..+.. .+..+...-+|+ +|+..
T Consensus 2 ~i~CP~C~~~f~v~~~--~l~~~~~~vrC~--~C~~~ 34 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDD--KLPAGGRKVRCP--KCGHV 34 (37)
T ss_pred EEECCCCCceEEcCHH--HcccCCcEEECC--CCCcE
Confidence 4689999998876543 222222334798 88854
No 153
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=60.90 E-value=4.9 Score=31.82 Aligned_cols=27 Identities=33% Similarity=0.752 Sum_probs=17.3
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
-+|++||+.|..... .+ ..-|| +||+.
T Consensus 3 H~CtrCG~vf~~g~~--~i-----l~GCp--~CG~n 29 (112)
T COG3364 3 HQCTRCGEVFDDGSE--EI-----LSGCP--KCGCN 29 (112)
T ss_pred ceecccccccccccH--HH-----HccCc--cccch
Confidence 389999999875321 11 23487 78754
No 154
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.83 E-value=17 Score=36.38 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=12.7
Q ss_pred hhHHHHHhhcCCEEEEEccCCC
Q 024533 102 MNPAEENCRMADVVLCLGTSLQ 123 (266)
Q Consensus 102 ~~~a~~~~~~aDLlLvlGTSL~ 123 (266)
++...+.+.+-+.=|+|||.+.
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCccc
Confidence 3445555655555556788753
No 155
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=60.50 E-value=17 Score=38.64 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHhhcCCEEEEEccCCCh-hhccc-chHHHh-cCCCEEEEECCCCCCC-CC--CccEEE--ECcHHH-HHHHHHHHc
Q 024533 106 EENCRMADVVLCLGTSLQI-TPACN-LPLKSL-RGGGKIVIVNLQQTPK-DK--KASLVV--HAPVDK-VIAGVMRHL 174 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa~~-L~~~a~-~~g~~lViIN~~~t~~-d~--~adl~I--~g~~~e-vl~~L~~~L 174 (266)
.+.+.+||++|++|+-+.. .|... ....|. ++|+++|.|++-.+.. .. .+++.+ .-..+. ++..|++.+
T Consensus 365 l~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~i 442 (819)
T PRK08493 365 LEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKF 442 (819)
T ss_pred HHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHH
Confidence 4456789999999997654 55332 223453 5899999999988764 22 234555 333333 444555554
No 156
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=60.29 E-value=13 Score=37.48 Aligned_cols=78 Identities=12% Similarity=0.165 Sum_probs=49.7
Q ss_pred EcCCCCChh--------chhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE-Cc
Q 024533 92 DWEDALPPV--------EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH-AP 162 (266)
Q Consensus 92 ~FgE~lp~~--------~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~-g~ 162 (266)
+|+|..|.. --....+.++.||++|.+|+-+.=+-...+- +..+-..+|.++........ -.+. -.
T Consensus 249 ~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft--~~~~~~~~i~~~~~~v~I~~---~~f~~l~ 323 (557)
T COG3961 249 VIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFT--YQYKPANIIEIHPDSVKIKD---AVFTNLS 323 (557)
T ss_pred cccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeecccccee--eecCcccEEEeccCeeEecc---cccCCee
Confidence 577887753 1345677889999999999988766555553 23334678888877755321 1111 23
Q ss_pred HHHHHHHHHHHc
Q 024533 163 VDKVIAGVMRHL 174 (266)
Q Consensus 163 ~~evl~~L~~~L 174 (266)
..++|++|.+.+
T Consensus 324 m~~~L~~L~~~i 335 (557)
T COG3961 324 MKDALQELAKKI 335 (557)
T ss_pred HHHHHHHHHHHh
Confidence 567777776655
No 157
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=59.91 E-value=3.7 Score=33.88 Aligned_cols=26 Identities=27% Similarity=0.739 Sum_probs=17.6
Q ss_pred ecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 51 ICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 51 ~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
+|++||+.|..... .+ ..-|| .|||.
T Consensus 3 ~Ct~Cg~~f~dgs~--ei-----l~GCP--~CGg~ 28 (131)
T PF09845_consen 3 QCTKCGRVFEDGSK--EI-----LSGCP--ECGGN 28 (131)
T ss_pred ccCcCCCCcCCCcH--HH-----HccCc--ccCCc
Confidence 79999999864321 11 23498 89975
No 158
>PRK04023 DNA polymerase II large subunit; Validated
Probab=59.52 E-value=5.7 Score=42.79 Aligned_cols=39 Identities=38% Similarity=0.656 Sum_probs=30.0
Q ss_pred EcCCCcce-----eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccccEE
Q 024533 42 ELHGNSFR-----EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVL 91 (266)
Q Consensus 42 ElHGnl~~-----~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~Vv 91 (266)
.|-||++. .+|.+|+..|.+-. ..-+|+ +|||.+-++|-
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~P---------L~G~C~--kCGg~lilTVh 1068 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRPP---------LSGKCP--KCGGNLILTVH 1068 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccCC---------CCCcCc--cCCCeEEEEEe
Confidence 56699863 68999999986532 234798 89999988884
No 159
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=59.45 E-value=12 Score=31.17 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=46.1
Q ss_pred hhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-----CCccEE---EECcHHHHHHHHHH
Q 024533 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-----KKASLV---VHAPVDKVIAGVMR 172 (266)
Q Consensus 102 ~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-----~~adl~---I~g~~~evl~~L~~ 172 (266)
...+.+.+.+||++++-|||+.--....+...++ ++..++++=+.-.-.+ ...+.. +--+.+.++..+.+
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISE 130 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCT
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHc
Confidence 3557788999999999999999888878766554 6788888877644332 222221 24577777766644
No 160
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=59.10 E-value=18 Score=31.12 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=37.1
Q ss_pred HHHHh---hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEEC-cHHHHHHHHHH
Q 024533 105 AEENC---RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA-PVDKVIAGVMR 172 (266)
Q Consensus 105 a~~~~---~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g-~~~evl~~L~~ 172 (266)
+.+.+ .++||+|.+|+.. |..+.+....++-+++..|.+.... ...|++.+-. +-++++..|-+
T Consensus 99 ~~e~~~g~~~~DlvlfvG~~~---~~~~~~l~~lk~f~~~~~~~~~~~y-~~~a~~s~~~~~~~~~~~~l~~ 166 (171)
T PRK00945 99 NWKGLDGNGNYDLVIFIGVTY---YYASQGLSALKHFSPLKTITIDRYY-HPNADMSFPNLSKEEYLEYLDE 166 (171)
T ss_pred hhhhhcCCCCcCEEEEecCCc---hhHHHHHHHHhhcCCceEEEecCCc-CCCCceecCCCCHHHHHHHHHH
Confidence 34455 6899999999994 6655555555544445555555444 2345665422 45555555543
No 161
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=58.95 E-value=5.9 Score=22.74 Aligned_cols=23 Identities=43% Similarity=1.129 Sum_probs=14.7
Q ss_pred ecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcc
Q 024533 51 ICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 86 (266)
Q Consensus 51 ~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~l 86 (266)
.|.+||++...+ ..-|+ .||..|
T Consensus 1 ~Cp~CG~~~~~~-----------~~fC~--~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD-----------AKFCP--NCGTPL 23 (23)
T ss_pred CCcccCCCCCCc-----------Ccchh--hhCCcC
Confidence 488899876322 23587 788653
No 162
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=58.37 E-value=20 Score=41.07 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=43.9
Q ss_pred HHhhcCCEEEEEccCCChh-hcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHH
Q 024533 107 ENCRMADVVLCLGTSLQIT-PACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRH 173 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~-Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~ 173 (266)
..+.++|++|++|+.+.-. ....+ .. ... ..+|.|+.++...+ ...++.|.+++.+++..|.+.
T Consensus 594 ~~~~~aDlVl~iG~rl~s~~~t~~~-~~-~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~ 660 (1655)
T PLN02980 594 RNWIQFDVVIQIGSRITSKRVSQML-EK-CFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKA 660 (1655)
T ss_pred hccCCCCEEEEeCCccccHHHHHHH-Hh-CCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhc
Confidence 3457899999999998622 22222 11 111 35889999888765 345788999999999888653
No 163
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=57.80 E-value=6.3 Score=43.43 Aligned_cols=39 Identities=38% Similarity=0.636 Sum_probs=29.9
Q ss_pred EcCCCcce-----eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccccEE
Q 024533 42 ELHGNSFR-----EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVL 91 (266)
Q Consensus 42 ElHGnl~~-----~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~Vv 91 (266)
.|-||++. .+|.+|+..|.+-. ..-+|+ +|||.+-++|-
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~P---------L~G~C~--kCGg~iilTv~ 1284 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRMP---------LAGKCR--KCGGRIILTVH 1284 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccCC---------CCCccc--ccCCeEEEEEe
Confidence 57799873 68999999986532 234798 89999888874
No 164
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=57.73 E-value=8.9 Score=23.71 Aligned_cols=24 Identities=38% Similarity=0.963 Sum_probs=17.2
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 84 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg 84 (266)
.+|..||..|..+. ...+|| .||.
T Consensus 2 ~~C~~CGy~y~~~~---------~~~~CP--~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE---------APWVCP--VCGA 25 (33)
T ss_pred EECCCCCCEECCCc---------CCCcCc--CCCC
Confidence 57999999885331 245798 8985
No 165
>PRK05580 primosome assembly protein PriA; Validated
Probab=57.18 E-value=21 Score=37.03 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=12.3
Q ss_pred hhHHHHHhhcCCEEEEEccCCC
Q 024533 102 MNPAEENCRMADVVLCLGTSLQ 123 (266)
Q Consensus 102 ~~~a~~~~~~aDLlLvlGTSL~ 123 (266)
.+++.+.+.+-+.=|+|||.+.
T Consensus 469 ~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 469 LEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred HHHHHHHHhcCCCCEEEEChhh
Confidence 4445555555444455777653
No 166
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=56.96 E-value=18 Score=34.20 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=35.7
Q ss_pred Hhh-cCCEEEEEccCCCh-hhc--ccc-------hHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCR-MADVVLCLGTSLQI-TPA--CNL-------PLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~-~aDLlLvlGTSL~V-~Pa--~~L-------~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+. +||++|++|+-... .|. .++ ...+.++|++++.|++..+.....+|.+|.
T Consensus 133 di~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 133 EVKNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred HHhhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 443 69999999997544 231 111 111226789999999999887777777664
No 167
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=56.62 E-value=49 Score=32.41 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=50.9
Q ss_pred hHHHHHhhcCCEEEEEccCCChhhcccchHHHhc--CCCEEEEECCCCCCCC-------CCccEEEECcHHHHHHHHHHH
Q 024533 103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKD-------KKASLVVHAPVDKVIAGVMRH 173 (266)
Q Consensus 103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~--~g~~lViIN~~~t~~d-------~~adl~I~g~~~evl~~L~~~ 173 (266)
+...+...++|++.+-.++.+...+..+....++ .++++|+--...|... ...|+++.|..+..+.+|++.
T Consensus 60 ~~~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~g 139 (472)
T TIGR03471 60 DDTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAEG 139 (472)
T ss_pred HHHHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHcC
Confidence 3344456689998887777777777777655544 3778888777766532 246899999999999988753
No 168
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=56.56 E-value=8.1 Score=30.78 Aligned_cols=30 Identities=37% Similarity=1.008 Sum_probs=20.7
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccccc
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 89 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~ 89 (266)
-.|.+||+.|+- ++..+-.|| .||....|.
T Consensus 10 R~Cp~CG~kFYD--------Lnk~PivCP--~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYD--------LNKDPIVCP--KCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhcc--------CCCCCccCC--CCCCccCcc
Confidence 469999987631 122344599 999887776
No 169
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=56.51 E-value=6.6 Score=26.99 Aligned_cols=28 Identities=39% Similarity=0.718 Sum_probs=18.8
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
...|..||+++..+. ....-+|| .||..
T Consensus 6 ~Y~C~~Cg~~~~~~~-------~~~~irCp--~Cg~r 33 (49)
T COG1996 6 EYKCARCGREVELDQ-------ETRGIRCP--YCGSR 33 (49)
T ss_pred EEEhhhcCCeeehhh-------ccCceeCC--CCCcE
Confidence 468999999883221 22345898 89964
No 170
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=55.94 E-value=18 Score=33.07 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=46.5
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEEC
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHA 161 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g 161 (266)
....+..-|++|++.-|....-.-.....|+++|+++|.|--. .++..+.+|+.+..
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 3446678899999999998877777778899999999988655 67788888888765
No 171
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=55.64 E-value=5.8 Score=23.25 Aligned_cols=24 Identities=42% Similarity=1.100 Sum_probs=16.2
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcc
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 86 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~l 86 (266)
..|.+||.....+ ...|+ .||..|
T Consensus 3 ~~Cp~Cg~~~~~~-----------~~fC~--~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPD-----------AKFCP--NCGAKL 26 (26)
T ss_pred CCCcccCCcCCcc-----------cccCh--hhCCCC
Confidence 5799999864322 34688 898654
No 172
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=55.64 E-value=24 Score=36.90 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCCCC
Q 024533 106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTPK 151 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t~~ 151 (266)
...+.+||++|++|+-... .|. ......|+++|+++|.|++..+..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 4567789999999997543 332 222345678899999999987754
No 173
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=55.56 E-value=33 Score=28.30 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=41.0
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEE
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVH 160 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~ 160 (266)
+.+-|++|++-.|....-.......|+++|+++|.|-- ..++..+.+|+.|.
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 46789999999999888877777889999999888754 44556667787765
No 174
>PRK07586 hypothetical protein; Validated
Probab=55.41 E-value=37 Score=33.49 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=16.4
Q ss_pred hHHHHHhhcCCEEEEEccCC
Q 024533 103 NPAEENCRMADVVLCLGTSL 122 (266)
Q Consensus 103 ~~a~~~~~~aDLlLvlGTSL 122 (266)
..+.+.+++|||+|++|+++
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~ 273 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKA 273 (514)
T ss_pred HHHHHHHhcCCEEEEECCCC
Confidence 34556788999999999985
No 175
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=55.36 E-value=22 Score=31.99 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=43.0
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEEC
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g 161 (266)
.+.+-|++|++..|....-.-.....|+++|+++|.|-...++..+.+|+.|.-
T Consensus 172 ~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 172 NSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 456789999999998887777777889999999999986555666677777653
No 176
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=55.14 E-value=12 Score=23.42 Aligned_cols=26 Identities=31% Similarity=0.862 Sum_probs=17.8
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
..+|..||..+..+ ..+..|| .||..
T Consensus 2 ~~~C~~CG~i~~g~---------~~p~~CP--~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGE---------EAPEKCP--ICGAP 27 (34)
T ss_pred eEECCCCCCEeECC---------cCCCcCc--CCCCc
Confidence 46899999887432 1234798 89863
No 177
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=55.09 E-value=8.6 Score=37.25 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=19.6
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 88 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP 88 (266)
..+|.+||++|+ +. ...+|| .|+|.|..
T Consensus 2 ~l~C~~Cg~~~~-~~---------~~~~C~--~c~g~l~~ 29 (398)
T TIGR03844 2 TLRCPGCGEVLP-DH---------YTLSCP--LDCGLLRA 29 (398)
T ss_pred EEEeCCCCCccC-Cc---------cccCCC--CCCCceEE
Confidence 578999999985 21 125798 78876553
No 178
>PRK12474 hypothetical protein; Provisional
Probab=54.92 E-value=40 Score=33.41 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=34.4
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccch---HHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLP---LKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~---~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+++... ..... ........+++.++.. .+++.++|..|.+.+.
T Consensus 259 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~------------~~d~~~~l~~L~~~l~ 320 (518)
T PRK12474 259 QITAFLKDVEQLVLVGAKPPVS-FFAYPGKPSWGAPPGCEIVYLAQP------------DEDLAQALQDLADAVD 320 (518)
T ss_pred HHHHHHhhCCEEEEECCCCCcc-ccccCCCccccCCCCCEEEEECCC------------CcCHHHHHHHHHHhcc
Confidence 3446788999999999986321 10000 0001123455544421 2688999999887764
No 179
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=54.01 E-value=16 Score=30.76 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=43.5
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEECcHH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPVD 164 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g~~~ 164 (266)
.+.+-|++|++.-|....-.-.+.+.|+++|+++|.|-- ..++..+.+|+.|.-..+
T Consensus 72 ~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~ 129 (179)
T cd05005 72 AIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAA 129 (179)
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCc
Confidence 456789999999999988888888889999999877754 455666677777755444
No 180
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=53.69 E-value=16 Score=25.12 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=28.4
Q ss_pred ceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcc
Q 024533 39 KLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 86 (266)
Q Consensus 39 ~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~l 86 (266)
-|..+.|. .|..|+-..+.... ..+...+....|| .||-.|
T Consensus 16 ~va~v~~~----~C~gC~~~l~~~~~-~~i~~~~~i~~Cp--~CgRiL 56 (56)
T PF02591_consen 16 AVARVEGG----TCSGCHMELPPQEL-NEIRKGDEIVFCP--NCGRIL 56 (56)
T ss_pred EEEEeeCC----ccCCCCEEcCHHHH-HHHHcCCCeEECc--CCCccC
Confidence 57788876 89999988765543 2333334567899 899654
No 181
>PRK13938 phosphoheptose isomerase; Provisional
Probab=53.08 E-value=18 Score=31.60 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=42.4
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEECcH
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPV 163 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g~~ 163 (266)
..+.+-|++|++-.|....-.-.....|+++|+++|.|-- ...+..+.+|+.|.-..
T Consensus 109 ~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~ 166 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPS 166 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCC
Confidence 3456789999999998887777777788999999887754 34455667787765433
No 182
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=52.95 E-value=10 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.602 Sum_probs=21.0
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccccc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 89 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~ 89 (266)
+-.|.+||+.|+- ++..+..|| .||....|.
T Consensus 9 Kr~Cp~cg~kFYD--------Lnk~p~vcP--~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD--------LNRRPAVSP--YTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc--------cCCCCccCC--CcCCccCcc
Confidence 3579999987631 223466898 999775554
No 183
>PRK06450 threonine synthase; Validated
Probab=52.80 E-value=9.8 Score=35.95 Aligned_cols=26 Identities=38% Similarity=0.815 Sum_probs=17.0
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
.+|..||++|..+ ...+|| .|||.|.
T Consensus 4 ~~C~~Cg~~~~~~----------~~~~C~--~cg~~l~ 29 (338)
T PRK06450 4 EVCMKCGKERESI----------YEIRCK--KCGGPFE 29 (338)
T ss_pred eEECCcCCcCCCc----------ccccCC--cCCCEeE
Confidence 6899999887321 124687 7877544
No 184
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=52.10 E-value=3.5 Score=39.12 Aligned_cols=40 Identities=28% Similarity=0.542 Sum_probs=29.2
Q ss_pred CCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccccEE
Q 024533 44 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVL 91 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~Vv 91 (266)
-|-++..-|.+|...|..+... ..--+|| +|||.++-.|.
T Consensus 241 LGKY~~TAC~rC~t~y~le~A~------~~~wrCp--kCGg~ikKGV~ 280 (403)
T COG1379 241 LGKYHLTACSRCYTRYSLEEAK------SLRWRCP--KCGGKIKKGVS 280 (403)
T ss_pred ccchhHHHHHHhhhccCcchhh------hhcccCc--ccccchhhhHH
Confidence 4677788899999988755422 1235898 99998887764
No 185
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=51.98 E-value=24 Score=33.04 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=20.9
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccccc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 89 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~ 89 (266)
..+|.+|++........+ ....|| +||-.+|-+
T Consensus 38 w~kc~~C~~~~~~~~l~~------~~~vcp--~c~~h~rlt 70 (296)
T CHL00174 38 WVQCENCYGLNYKKFLKS------KMNICE--QCGYHLKMS 70 (296)
T ss_pred eeECCCccchhhHHHHHH------cCCCCC--CCCCCcCCC
Confidence 688999998765443222 224688 887655543
No 186
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=50.77 E-value=22 Score=27.91 Aligned_cols=48 Identities=27% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEc--CCCcceeecCCCCcccchh
Q 024533 4 ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAEL--HGNSFREICPSCGVEYMRD 62 (266)
Q Consensus 4 ~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viEl--HGnl~~~~C~~C~~~~~~~ 62 (266)
-.++.|..|++.|.+..+.+.| | ...+++ +..-....|..||+.+..+
T Consensus 44 TVYR~L~~L~e~Gli~~~~~~~--~---------~~~Y~~~~~~~h~h~iC~~Cg~v~~~~ 93 (120)
T PF01475_consen 44 TVYRTLDLLEEAGLIRKIEFGD--G---------ESRYELSTCHHHHHFICTQCGKVIDLD 93 (120)
T ss_dssp HHHHHHHHHHHTTSEEEEEETT--S---------EEEEEESSSSSCEEEEETTTS-EEEE-
T ss_pred HHHHHHHHHHHCCeEEEEEcCC--C---------cceEeecCCCcceEEEECCCCCEEEec
Confidence 3688999999999877655442 2 123444 3445568999999976543
No 187
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=49.91 E-value=11 Score=30.15 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=22.9
Q ss_pred eEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 40 LAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 40 viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
-+++.=--...+|..|+..+..+. ....+|| .||+.
T Consensus 62 ~L~Ie~vp~~~~C~~Cg~~~~~~~--------~~~~~CP--~Cgs~ 97 (117)
T PRK00564 62 ILDIVDEKVELECKDCSHVFKPNA--------LDYGVCE--KCHSK 97 (117)
T ss_pred EEEEEecCCEEEhhhCCCccccCC--------ccCCcCc--CCCCC
Confidence 445554555688999997664321 1134698 89975
No 188
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=49.37 E-value=30 Score=26.74 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=41.7
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEECcHH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPVD 164 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g~~~ 164 (266)
.+..-|++|++-.|........+...++.+|+++|.|-. ..++..+.+|..|.-...
T Consensus 57 ~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~ 114 (139)
T cd05013 57 NLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCC
Confidence 456678999999998877777777788889999877644 445556667777765443
No 189
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=49.13 E-value=83 Score=26.30 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=46.4
Q ss_pred CCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE----ECcHHHHHHHH
Q 024533 96 ALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV----HAPVDKVIAGV 170 (266)
Q Consensus 96 ~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I----~g~~~evl~~L 170 (266)
.++.+.++++.+.+.++.-+.++|.+..-..+..+...-..-|.++..++-.....-...|+.| .|...+++..+
T Consensus 17 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~ 95 (179)
T cd05005 17 KIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAA 95 (179)
T ss_pred hcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHH
Confidence 4566678888889999999999998877555555543334457777776543222212234433 56777766443
No 190
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=48.73 E-value=10 Score=30.16 Aligned_cols=35 Identities=31% Similarity=0.572 Sum_probs=20.6
Q ss_pred eEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 40 LAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 40 viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
-+++.=-=...+|..|++.|..+.. .-.|| .||+.
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~~~~~---------~~~CP--~Cgs~ 95 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFEPDEF---------DFSCP--RCGSP 95 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEECHHC---------CHH-S--SSSSS
T ss_pred EEEEEecCCcEECCCCCCEEecCCC---------CCCCc--CCcCC
Confidence 4444444456899999999865431 12498 89976
No 191
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=48.24 E-value=21 Score=34.67 Aligned_cols=66 Identities=26% Similarity=0.274 Sum_probs=48.2
Q ss_pred HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC------CccEEEECcHHHHHHHHHHHcc
Q 024533 106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK------KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~------~adl~I~g~~~evl~~L~~~L~ 175 (266)
.++++++|++|.+.|-|-..-..+|.. ...+++.|...|....+ .....|-.++..+++.|.+.|.
T Consensus 334 R~~~~~a~~vimlaTmLHSIAtGNm~P----s~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 334 RELLQGADMVLMLSTMLHSIAVGNLLP----SGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred HHHhccCCeehhHHHHHHHHhhccccc----ccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 345678999999999988777777632 33477787777755332 2346788999999999988874
No 192
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=48.08 E-value=23 Score=38.56 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=39.7
Q ss_pred HhhcCCEEEEEccCCChh--hccc---chHHHhcCC-CEEEEECCCCCCCC----CCccEEE--ECcHHHHH
Q 024533 108 NCRMADVVLCLGTSLQIT--PACN---LPLKSLRGG-GKIVIVNLQQTPKD----KKASLVV--HAPVDKVI 167 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~--Pa~~---L~~~a~~~g-~~lViIN~~~t~~d----~~adl~I--~g~~~evl 167 (266)
.+.++|++|++||+-... |+.. ....++.+| +++|+|++..+... ..+|.+| +-..|-+|
T Consensus 282 D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlpIrPGTD~AL 353 (1031)
T PRK14991 282 DWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWLPIRPGTDSAL 353 (1031)
T ss_pred hhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEeCCCCCcHHHH
Confidence 567899999999986653 3322 123456565 79999999988743 4567775 43444433
No 193
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=47.82 E-value=59 Score=34.24 Aligned_cols=31 Identities=32% Similarity=0.709 Sum_probs=18.3
Q ss_pred EEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 41 AELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 41 iElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
..+|-.-+..+|-.||++. ..+-.|| +||+.
T Consensus 454 lt~H~~~~~L~CH~Cg~~~------------~~p~~Cp--~Cgs~ 484 (730)
T COG1198 454 LTLHKATGQLRCHYCGYQE------------PIPQSCP--ECGSE 484 (730)
T ss_pred eEEecCCCeeEeCCCCCCC------------CCCCCCC--CCCCC
Confidence 4445555555555555532 2345798 99987
No 194
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=47.48 E-value=26 Score=33.51 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=32.1
Q ss_pred HHHHHhhcCCEEEEEccCCCh-hhcccc-hHHH-hcCCCEEEEECCCC
Q 024533 104 PAEENCRMADVVLCLGTSLQI-TPACNL-PLKS-LRGGGKIVIVNLQQ 148 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V-~Pa~~L-~~~a-~~~g~~lViIN~~~ 148 (266)
...+.+++||++|++|+-+.. .|.-.. .+.+ ++.|++++.|++..
T Consensus 141 ~sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 141 NSLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred CCHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 346678899999999998776 444332 1233 35688999999876
No 195
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.76 E-value=11 Score=28.32 Aligned_cols=43 Identities=21% Similarity=0.517 Sum_probs=27.1
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc-----ccEEEcCCC
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK-----DTVLDWEDA 96 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr-----P~Vv~FgE~ 96 (266)
....|..|+..++ .+..+.. +..-.|+ .||+.+| +.|+|=|-.
T Consensus 11 Y~Y~c~~cg~~~d---vvq~~~d-dplt~ce--~c~a~~kk~l~~vgi~fKGSG 58 (82)
T COG2331 11 YSYECTECGNRFD---VVQAMTD-DPLTTCE--ECGARLKKLLNAVGIVFKGSG 58 (82)
T ss_pred eEEeecccchHHH---HHHhccc-CccccCh--hhChHHHHhhccceEEEecce
Confidence 3568999998763 2333322 2345688 8998764 667765554
No 196
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=46.12 E-value=10 Score=29.40 Aligned_cols=28 Identities=43% Similarity=0.890 Sum_probs=18.9
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
-.+|-+||.++..+.. ..+-+|| .|.+.
T Consensus 58 Pa~CkkCGfef~~~~i-------k~pSRCP--~CKSE 85 (97)
T COG3357 58 PARCKKCGFEFRDDKI-------KKPSRCP--KCKSE 85 (97)
T ss_pred ChhhcccCcccccccc-------CCcccCC--cchhh
Confidence 4689999998754321 2345898 88753
No 197
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=45.54 E-value=30 Score=31.05 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=44.0
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEEC
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHA 161 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g 161 (266)
+...+.+-|++|++.-|............|+++|+++|.|--. .++..+.+|+.|..
T Consensus 169 ~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 169 TVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 3446778899999988888777777777889999998888654 45566778888764
No 198
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=45.32 E-value=26 Score=32.73 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=45.1
Q ss_pred HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC----CCCCCccEEEECc---HHHHHHHHHHHc
Q 024533 106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT----PKDKKASLVVHAP---VDKVIAGVMRHL 174 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t----~~d~~adl~I~g~---~~evl~~L~~~L 174 (266)
.+.+.+||++||+|+.-+ .-..+|.+.|.+.|.+-+.|+.... -+.....+.|.+. .+.+..++.++|
T Consensus 207 k~la~~~Dl~iVVG~~nS-SNs~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l 281 (294)
T COG0761 207 KELAPEVDLVIVVGSKNS-SNSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKL 281 (294)
T ss_pred HHHhhcCCEEEEECCCCC-ccHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHH
Confidence 345678999999998533 4446787888999998888875432 2334445666543 455666666654
No 199
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=45.11 E-value=38 Score=29.24 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=42.0
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEECcH
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPV 163 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g~~ 163 (266)
..+-|++|++-.|....-.......|+++|+++|.|-- ...+..+.+|+.|.-..
T Consensus 109 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 109 GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 46779999999999888877777888999999887754 34555566777775444
No 200
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=45.08 E-value=13 Score=33.39 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=27.0
Q ss_pred EEcc--CCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEEC--cHHHHHHH
Q 024533 117 CLGT--SLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHA--PVDKVIAG 169 (266)
Q Consensus 117 vlGT--SL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g--~~~evl~~ 169 (266)
|+|+ |....-+..+-......|.++++||++|... +..+++-|+. +.+++|.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~ 59 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEE 59 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhh
Confidence 3454 4455556666666677889999999999763 3334555544 33444444
No 201
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=45.01 E-value=13 Score=41.29 Aligned_cols=57 Identities=33% Similarity=0.460 Sum_probs=36.3
Q ss_pred EcCCCcce-----eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCC
Q 024533 42 ELHGNSFR-----EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMAD 113 (266)
Q Consensus 42 ElHGnl~~-----~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aD 113 (266)
.|-||+.. .+| +|+..|.+.. ..-+|+ +|||.+-.+|- ..++ ++-+..|...+++.+
T Consensus 1530 Dl~GNLRaFsrQ~~RC-kC~~kyRR~P---------L~G~C~--kCGg~~ilTV~--kGsv-~KYl~~a~~~~~~y~ 1591 (1627)
T PRK14715 1530 DLIGNLRAFSRQEFRC-KCGAKYRRVP---------LKGKCP--KCGSKLILTVS--KGAV-EKYMPVAKMMAEKYN 1591 (1627)
T ss_pred hhhhhhhhhhccceee-cCCCccccCC---------CCCcCc--ccCCeEEEEEe--cchH-HHHHHHHHHHHHHcC
Confidence 56799863 689 9999986532 234798 89999888874 2222 223445555554443
No 202
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=44.87 E-value=15 Score=31.86 Aligned_cols=27 Identities=33% Similarity=0.632 Sum_probs=19.7
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 88 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP 88 (266)
..+|..|++.|.. ..-.|| .||+.++=
T Consensus 139 ~~rC~GC~~~f~~-----------~~~~Cp--~CG~~~~~ 165 (177)
T COG1439 139 RLRCHGCKRIFPE-----------PKDFCP--ICGSPLKR 165 (177)
T ss_pred eEEEecCceecCC-----------CCCcCC--CCCCceEE
Confidence 4689999998851 123698 99998653
No 203
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=44.30 E-value=39 Score=26.02 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=40.9
Q ss_pred cccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC--CCCCccEEEECcHH
Q 024533 87 KDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVHAPVD 164 (266)
Q Consensus 87 rP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~--~d~~adl~I~g~~~ 164 (266)
.++|.+.|.. .+..+.+..||+.|..-..-...|. .+ ..+...|.+++.-+..... ......+.+.++.+
T Consensus 52 ~~~v~~~g~~------~e~~~~l~~~dv~l~p~~~~~~~~~-k~-~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFV------EELPEILAAADVGLIPSRFNEGFPN-KL-LEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPE 123 (135)
T ss_dssp HCTEEEE-S-------HHHHHHHHC-SEEEE-BSS-SCC-H-HH-HHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HH
T ss_pred CCCEEEcCCH------HHHHHHHHhCCEEEEEeeCCCcCcH-HH-HHHHHhCCCEEECCcchhhheeecCCeEEECCCHH
Confidence 5688877665 2356678889999875432221222 22 2466789988876662111 12344566678888
Q ss_pred HHHHHHHHHc
Q 024533 165 KVIAGVMRHL 174 (266)
Q Consensus 165 evl~~L~~~L 174 (266)
++...|.+.+
T Consensus 124 ~l~~~i~~l~ 133 (135)
T PF13692_consen 124 ELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887776554
No 204
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=44.16 E-value=19 Score=24.02 Aligned_cols=26 Identities=42% Similarity=0.813 Sum_probs=17.8
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
..|..||.++..+ ....-+|| .||..
T Consensus 3 Y~C~~Cg~~~~~~--------~~~~irC~--~CG~r 28 (44)
T smart00659 3 YICGECGRENEIK--------SKDVVRCR--ECGYR 28 (44)
T ss_pred EECCCCCCEeecC--------CCCceECC--CCCce
Confidence 5799999976533 11235798 89964
No 205
>PRK02947 hypothetical protein; Provisional
Probab=43.94 E-value=37 Score=30.51 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=41.0
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCC------------CCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ------------TPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~------------t~~d~~adl~I~ 160 (266)
.+..-|++|++-.|....-...+...|+++|+++|.|--.+ .+..+.+|+.|.
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 45678999999999888888788888999999999986554 344456676663
No 206
>PRK14873 primosome assembly protein PriA; Provisional
Probab=43.69 E-value=37 Score=35.23 Aligned_cols=13 Identities=46% Similarity=1.112 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCc-ccc
Q 024533 74 PRRCSDVKCGSR-LKD 88 (266)
Q Consensus 74 ~p~Cp~~~Cgg~-lrP 88 (266)
...|| .||+. +++
T Consensus 422 p~~Cp--~Cgs~~l~~ 435 (665)
T PRK14873 422 DWRCP--RCGSDRLRA 435 (665)
T ss_pred CccCC--CCcCCccee
Confidence 45798 89975 444
No 207
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=43.68 E-value=1.4e+02 Score=27.26 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC---CCCCccEEEECcHHHHHHHHHHHcc
Q 024533 106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~---~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+..||+++.- |. ..++..-+..|...|.++|..+..... .+....+.+.++.+++...+.+.+.
T Consensus 294 ~~~l~~ad~~l~~--s~-~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~ 363 (392)
T cd03805 294 ELLLSSARALLYT--PS-NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLAN 363 (392)
T ss_pred HHHHhhCeEEEEC--CC-cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHh
Confidence 3456788987762 32 233333345788899999988865432 2344567777787777666655543
No 208
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=43.61 E-value=13 Score=23.39 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=14.9
Q ss_pred CCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC
Q 024533 44 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 84 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg 84 (266)
-|.+...+|.+||..+.- .-+.|+ .|++
T Consensus 6 ~~~l~~~rC~~Cg~~~~p-----------Pr~~Cp--~C~s 33 (37)
T PF12172_consen 6 EGRLLGQRCRDCGRVQFP-----------PRPVCP--HCGS 33 (37)
T ss_dssp TT-EEEEE-TTT--EEES-------------SEET--TTT-
T ss_pred CCEEEEEEcCCCCCEecC-----------CCcCCC--CcCc
Confidence 366777899999986421 125788 8875
No 209
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=43.59 E-value=23 Score=37.37 Aligned_cols=51 Identities=4% Similarity=-0.052 Sum_probs=33.8
Q ss_pred hhcCCEEEEEccCCCh----------hhcccchHHHh---cC-CCEEEEECCCCCCCCCC-ccEEE
Q 024533 109 CRMADVVLCLGTSLQI----------TPACNLPLKSL---RG-GGKIVIVNLQQTPKDKK-ASLVV 159 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V----------~Pa~~L~~~a~---~~-g~~lViIN~~~t~~d~~-adl~I 159 (266)
+.++|++|+.|+-... .|.......++ ++ |+++|.|++..|..... +|.+|
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l 273 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHL 273 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEe
Confidence 5789999999998653 23322222222 24 48999999999987654 45554
No 210
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=43.56 E-value=17 Score=28.92 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=21.6
Q ss_pred eEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 40 LAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 40 viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
-+++.=---..+|..|+..+..+. ..-.|| .||+.
T Consensus 61 ~L~I~~vp~~~~C~~Cg~~~~~~~---------~~~~CP--~Cgs~ 95 (113)
T PRK12380 61 DLHIVYKPAQAWCWDCSQVVEIHQ---------HDAQCP--HCHGE 95 (113)
T ss_pred EEEEEeeCcEEEcccCCCEEecCC---------cCccCc--CCCCC
Confidence 344444445678999998775431 122498 89965
No 211
>PRK15482 transcriptional regulator MurR; Provisional
Probab=43.33 E-value=34 Score=30.98 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=45.4
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEECcHH
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHAPVD 164 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g~~~ 164 (266)
..+.+-|++|++.-|........+...|+++|+++|.|--. .++..+.+|+.|....+
T Consensus 178 ~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~ 236 (285)
T PRK15482 178 QALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSG 236 (285)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCC
Confidence 35667799999999999888888888899999998888654 45566778887765443
No 212
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=43.11 E-value=20 Score=33.79 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=35.6
Q ss_pred hcCCEEEEEcc--CCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEEC
Q 024533 110 RMADVVLCLGT--SLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHA 161 (266)
Q Consensus 110 ~~aDLlLvlGT--SL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g 161 (266)
+..-.+||+|- |..+.-..+|.......+.+..+||++|... +-.+++-|+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRD 72 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRD 72 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhh
Confidence 34457778775 7777777888777777888888999998642 2334444444
No 213
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.66 E-value=1e+02 Score=25.62 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=47.5
Q ss_pred CCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE----ECcHHHHHHHH-
Q 024533 96 ALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV----HAPVDKVIAGV- 170 (266)
Q Consensus 96 ~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I----~g~~~evl~~L- 170 (266)
.++++.++++.+.+.++.-+.++|.+..-..+..+...-..-|.....+.......-...|+.| .|...+++..+
T Consensus 14 ~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~ 93 (179)
T TIGR03127 14 RIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAK 93 (179)
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHH
Confidence 4566678888889999999999999876655555544334456666555433222222234433 46666666543
Q ss_pred -HHHcc
Q 024533 171 -MRHLN 175 (266)
Q Consensus 171 -~~~L~ 175 (266)
++..|
T Consensus 94 ~ak~~g 99 (179)
T TIGR03127 94 KAKEIG 99 (179)
T ss_pred HHHHCC
Confidence 34444
No 214
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=42.51 E-value=14 Score=28.61 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=40.9
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEECc
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHAP 162 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g~ 162 (266)
..+.+-|++|++-.|............++++|+++|.|--. ..+..+.+|+.|.-.
T Consensus 49 ~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 49 ENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp GGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred ccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 34556789999999998888888888889999998888543 444455566665433
No 215
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=41.52 E-value=19 Score=38.11 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCC
Q 024533 107 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQ 147 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~ 147 (266)
..+.+||++|++|+-+.. .|. ......|.++|++++.|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 456789999999998755 443 23334567788888877775
No 216
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=41.46 E-value=53 Score=34.14 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=30.6
Q ss_pred HHHhhcCCEEEEEccCCCh-hhcc-cchHHHhcCC-CEEEEECCCCCC
Q 024533 106 EENCRMADVVLCLGTSLQI-TPAC-NLPLKSLRGG-GKIVIVNLQQTP 150 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa~-~L~~~a~~~g-~~lViIN~~~t~ 150 (266)
.+.+++||++|++|+.... .|.. .-...+.++| .+++.|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 4467889999999998754 3422 1123455566 499999988654
No 217
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=41.45 E-value=40 Score=27.26 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.2
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV 144 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI 144 (266)
+..-|++|++-+|..-...-.....|+++|.++|-|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 677899999999998776667777899999998865
No 218
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=40.87 E-value=20 Score=28.56 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=18.8
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
-...+|..|++.+..+. ..-.|| .||+.
T Consensus 68 p~~~~C~~Cg~~~~~~~---------~~~~CP--~Cgs~ 95 (115)
T TIGR00100 68 PVECECEDCSEEVSPEI---------DLYRCP--KCHGI 95 (115)
T ss_pred CcEEEcccCCCEEecCC---------cCccCc--CCcCC
Confidence 34578999998775431 123598 89975
No 219
>PLN02275 transferase, transferring glycosyl groups
Probab=40.13 E-value=1.4e+02 Score=27.88 Aligned_cols=78 Identities=17% Similarity=-0.003 Sum_probs=42.0
Q ss_pred cEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC---CCCCccEEEECcHHH
Q 024533 89 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVHAPVDK 165 (266)
Q Consensus 89 ~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~---~d~~adl~I~g~~~e 165 (266)
++++|+..+|. +...+.+..||+++..=+|..-..+-+-...|...|.|+|..|....+ .+..+.+.+. +.++
T Consensus 287 ~v~~~~~~~~~---~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~-~~~~ 362 (371)
T PLN02275 287 HVAFRTMWLEA---EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS-SSSE 362 (371)
T ss_pred ceEEEcCCCCH---HHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC-CHHH
Confidence 46666655553 334567788999875322211011111123577899999988865443 2344556654 5554
Q ss_pred HHHHH
Q 024533 166 VIAGV 170 (266)
Q Consensus 166 vl~~L 170 (266)
....|
T Consensus 363 la~~i 367 (371)
T PLN02275 363 LADQL 367 (371)
T ss_pred HHHHH
Confidence 44333
No 220
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.68 E-value=52 Score=26.98 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcC--CCcceeecCCCCcccch
Q 024533 3 SITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYMR 61 (266)
Q Consensus 3 n~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElH--Gnl~~~~C~~C~~~~~~ 61 (266)
.-.|+.|..|++.|.+..+-..| | ...+++. +.-....|..||+.+..
T Consensus 53 aTVYR~L~~L~e~Gli~~~~~~~--------~---~~~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 53 ATVYRVLNQFDDAGIVTRHNFEG--------G---KSVFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCC--------C---cEEEEeCCCCCCCceEECCCCCEEEe
Confidence 34688999999998877665443 1 1123321 11235889999987654
No 221
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.51 E-value=60 Score=24.98 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcC--CCcceeecCCCCcccch
Q 024533 3 SITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYMR 61 (266)
Q Consensus 3 n~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElH--Gnl~~~~C~~C~~~~~~ 61 (266)
...++.|..|++.|.+..+-+.| | ...+++. ..-....|.+||+.+..
T Consensus 36 ~TVYR~L~~L~~~Gli~~~~~~~--~---------~~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 36 ATVYRTLELLEEAGLVREIELGD--G---------KARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCC--C---------ceEEEeCCCCCCCceEeCCCCCEEEe
Confidence 35688999999999877664433 1 1123321 22235899999987654
No 222
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=39.21 E-value=22 Score=28.37 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=18.4
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
=...+|..|+..+.... ...-.|| .||+.
T Consensus 68 p~~~~C~~Cg~~~~~~~--------~~~~~CP--~Cgs~ 96 (114)
T PRK03681 68 EAECWCETCQQYVTLLT--------QRVRRCP--QCHGD 96 (114)
T ss_pred CcEEEcccCCCeeecCC--------ccCCcCc--CcCCC
Confidence 34578999998764321 1113598 89965
No 223
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=38.62 E-value=23 Score=30.69 Aligned_cols=50 Identities=26% Similarity=0.250 Sum_probs=33.8
Q ss_pred ChhchhHHHHHhhc--CCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC
Q 024533 98 PPVEMNPAEENCRM--ADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP 150 (266)
Q Consensus 98 p~~~~~~a~~~~~~--aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~ 150 (266)
|...++...+.+++ .+-+++|||||-=+-|..| |.+.|.+-|+|||--.+
T Consensus 42 p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~L---a~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 42 PEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYL---AERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHH---HHHhCCCEEEEcCCCCH
Confidence 33445555555544 2348899999986666655 45568888999988665
No 224
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=38.14 E-value=1.9e+02 Score=25.47 Aligned_cols=85 Identities=20% Similarity=0.156 Sum_probs=47.0
Q ss_pred ccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC--CCCCccEEEE-Cc
Q 024533 86 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVH-AP 162 (266)
Q Consensus 86 lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~--~d~~adl~I~-g~ 162 (266)
+.++|.+.|..++.+ ...+.++.||+++.-... .-..+...+..|...|.|+|.-|..... .+....+.+. ++
T Consensus 245 ~~~~v~~~~~~~~~~---~~~~~~~~ad~~v~ps~~-e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d 320 (366)
T cd03822 245 LADRVIFINRYLPDE---ELPELFSAADVVVLPYRS-ADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGD 320 (366)
T ss_pred CCCcEEEecCcCCHH---HHHHHHhhcCEEEecccc-cccccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCC
Confidence 345666666656643 345677889988653222 2012222334577889999887765421 1223345444 55
Q ss_pred HHHHHHHHHHHc
Q 024533 163 VDKVIAGVMRHL 174 (266)
Q Consensus 163 ~~evl~~L~~~L 174 (266)
.+++...|.+.+
T Consensus 321 ~~~~~~~l~~l~ 332 (366)
T cd03822 321 PAALAEAIRRLL 332 (366)
T ss_pred HHHHHHHHHHHH
Confidence 676665554443
No 225
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=38.03 E-value=45 Score=30.20 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEEC
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHA 161 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g 161 (266)
..+.+-|++|++--|....-...+...|+.+|+++|.|--. .++..+.+|+.|..
T Consensus 183 ~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 183 ALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 45677899999988888777777777889999998888543 44555667777653
No 226
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.81 E-value=46 Score=23.72 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=30.7
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 145 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN 145 (266)
..+.+-|+++++-.|....-...+.+.++++|+++|.|-
T Consensus 43 ~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 43 SLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 456778999999888776666677778889999988773
No 227
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=37.46 E-value=52 Score=29.49 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 145 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN 145 (266)
..++.-|+++|+-+|..-.---.+.+.++.+|+++|.+-
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vT 138 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVT 138 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEe
Confidence 345678999999999875444456667889999999884
No 228
>PF14353 CpXC: CpXC protein
Probab=37.21 E-value=19 Score=28.82 Aligned_cols=16 Identities=44% Similarity=1.078 Sum_probs=10.6
Q ss_pred CCCcceeecCCCCccc
Q 024533 44 HGNSFREICPSCGVEY 59 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~ 59 (266)
-|+++...|.+||+.+
T Consensus 33 ~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKF 48 (128)
T ss_pred cCCcCEEECCCCCCce
Confidence 5667777777777654
No 229
>PRK13936 phosphoheptose isomerase; Provisional
Probab=37.17 E-value=61 Score=27.95 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=42.1
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCC---CccEEEECcHHH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDK---KASLVVHAPVDK 165 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~---~adl~I~g~~~e 165 (266)
...+-|++|.+..|....-.-.+...|+++|+++|.|--. .++..+ .+|+.|.-..++
T Consensus 108 ~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 108 LGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 3467899999999998777777777889999999887553 344433 477777655444
No 230
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=36.40 E-value=50 Score=30.64 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=40.3
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEEC
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 161 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g 161 (266)
+..-|++|++-.|............|++.|+++|.|-- ...+..+.+|+.|.-
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence 45679999999999988777777889999999887743 334455566777653
No 231
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=36.30 E-value=1.7e+02 Score=27.86 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=43.8
Q ss_pred cEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC---CCCCccEEEECcHHH
Q 024533 89 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVHAPVDK 165 (266)
Q Consensus 89 ~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~---~d~~adl~I~g~~~e 165 (266)
++++|+..+|. +...+.+..||+++.+-.+..-..+-.-+..|...|.|+|.-|....+ .+....+.+ ++.++
T Consensus 295 ~~~~~~g~~~~---~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv-~d~~~ 370 (415)
T cd03816 295 KVTIRTPWLSA---EDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVF-GDSEE 370 (415)
T ss_pred cEEEEcCcCCH---HHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEE-CCHHH
Confidence 45555444442 233456778998875322211011111123567889999887765332 234445655 57777
Q ss_pred HHHHHHHHcc
Q 024533 166 VIAGVMRHLN 175 (266)
Q Consensus 166 vl~~L~~~L~ 175 (266)
+-..|.+.+.
T Consensus 371 la~~i~~ll~ 380 (415)
T cd03816 371 LAEQLIDLLS 380 (415)
T ss_pred HHHHHHHHHh
Confidence 6666655544
No 232
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=35.72 E-value=45 Score=32.38 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.0
Q ss_pred HHHhhcCCEEEEEccCCCh
Q 024533 106 EENCRMADVVLCLGTSLQI 124 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V 124 (266)
...+.++|++|++|+-...
T Consensus 140 ~~di~~ad~il~~G~n~~~ 158 (472)
T cd02771 140 LRDIESADAVLVLGEDLTQ 158 (472)
T ss_pred HHHHHhCCEEEEEeCCccc
Confidence 3467789999999997654
No 233
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=35.42 E-value=50 Score=29.92 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=40.0
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE-CCCCCCCCCCccEEEE
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVH 160 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI-N~~~t~~d~~adl~I~ 160 (266)
+.+-|++|.+-.|............|++.|+++|.| |...++..+.+|+.|.
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~ 168 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIA 168 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEE
Confidence 467899999999999888888888899999998766 4444555555666664
No 234
>PRK08197 threonine synthase; Validated
Probab=35.31 E-value=24 Score=33.89 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=11.4
Q ss_pred ceeecCCCCcccchh
Q 024533 48 FREICPSCGVEYMRD 62 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~ 62 (266)
...+|.+||++|..+
T Consensus 6 ~~~~C~~Cg~~~~~~ 20 (394)
T PRK08197 6 SHLECSKCGETYDAD 20 (394)
T ss_pred eEEEECCCCCCCCCC
Confidence 357999999988543
No 235
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=35.23 E-value=51 Score=30.96 Aligned_cols=54 Identities=7% Similarity=-0.038 Sum_probs=38.9
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE-CCCCCCCCCCccEEEECc
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAP 162 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI-N~~~t~~d~~adl~I~g~ 162 (266)
+.+-|++|.+--|....-.-.....|+++|+++|-| |...++..+.+|+.|.-.
T Consensus 90 ~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ 144 (340)
T PRK11382 90 LDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQ 144 (340)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeC
Confidence 456689999966666666666666788889887776 666777777787766443
No 236
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.07 E-value=64 Score=24.42 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 145 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN 145 (266)
.....+.+||++|++=.-..=.-+...-..|++.|.|++..+
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 356788999999887544443333344446788899999886
No 237
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.85 E-value=37 Score=26.07 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=48.3
Q ss_pred cEEEcCCCCChhchhHHHHHhhcCCEEEEEc-cCCChhhcccchHHHhc--CCCEEEEECCCCCCCC-------CCccEE
Q 024533 89 TVLDWEDALPPVEMNPAEENCRMADVVLCLG-TSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKD-------KKASLV 158 (266)
Q Consensus 89 ~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlG-TSL~V~Pa~~L~~~a~~--~g~~lViIN~~~t~~d-------~~adl~ 158 (266)
+|.++|-+.+.+.+.+.... .+.|++.+=. ++-+...+..+....++ .+.+++.=....+... ..+|..
T Consensus 30 ~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~v 108 (121)
T PF02310_consen 30 EVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYV 108 (121)
T ss_dssp EEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEE
T ss_pred eEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCccee
Confidence 55566666654433332222 2788865544 44455566666655443 4678888777765421 345889
Q ss_pred EECcHHHHHHHHH
Q 024533 159 VHAPVDKVIAGVM 171 (266)
Q Consensus 159 I~g~~~evl~~L~ 171 (266)
+.|..++.+.+|+
T Consensus 109 v~GegE~~~~~l~ 121 (121)
T PF02310_consen 109 VRGEGEEAFPELL 121 (121)
T ss_dssp EEETTSSHHHH--
T ss_pred cCCChHHhhcccC
Confidence 9999988887763
No 238
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=34.70 E-value=84 Score=26.74 Aligned_cols=63 Identities=13% Similarity=0.023 Sum_probs=34.9
Q ss_pred HHHHh---hcCCEEEEEccCCChhhcccchHHHh-cCCCEEEEECCCCCCCCCCccEEE-ECcHHHHHHHHHH
Q 024533 105 AEENC---RMADVVLCLGTSLQITPACNLPLKSL-RGGGKIVIVNLQQTPKDKKASLVV-HAPVDKVIAGVMR 172 (266)
Q Consensus 105 a~~~~---~~aDLlLvlGTSL~V~Pa~~L~~~a~-~~g~~lViIN~~~t~~d~~adl~I-~g~~~evl~~L~~ 172 (266)
+.+.+ .++||+|.+|+.. |-+..+...-+ ....+.|.|+..- ...||+.+ +-.-++++..|-+
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~--y~~~~~ls~lk~f~~~~~i~l~~~y---~pnA~~Sf~n~~~~~~~~~l~~ 158 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIY--YYLSQMLSSLKHFSHIVTIAIDKYY---QPNADYSFPNLSKDEYLDYLRK 158 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcc--hHHHHHHHHHHhhcCcEEEEecCCC---CCCCceeccccCHHHHHHHHHH
Confidence 45556 7899999999997 33332322111 2356666666333 33456654 2235556665543
No 239
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.98 E-value=24 Score=31.99 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=28.4
Q ss_pred ceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcc
Q 024533 39 KLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 86 (266)
Q Consensus 39 ~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~l 86 (266)
-|+.+-|+ .|..|+-..+..+.. .+..++.+..|| .||..|
T Consensus 191 gvvpl~g~----~C~GC~m~l~~~~~~-~V~~~d~iv~CP--~CgRIL 231 (239)
T COG1579 191 GVVPLEGR----VCGGCHMKLPSQTLS-KVRKKDEIVFCP--YCGRIL 231 (239)
T ss_pred eEEeecCC----cccCCeeeecHHHHH-HHhcCCCCccCC--ccchHH
Confidence 47777775 599999877665432 233356788999 999754
No 240
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=33.96 E-value=59 Score=34.33 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=36.5
Q ss_pred hhcCCEEEEEccCCCh----------hhcccchHHHh---cC-CCEEEEECCCCCCCCCC-cc--EEEECcHHHHH
Q 024533 109 CRMADVVLCLGTSLQI----------TPACNLPLKSL---RG-GGKIVIVNLQQTPKDKK-AS--LVVHAPVDKVI 167 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V----------~Pa~~L~~~a~---~~-g~~lViIN~~~t~~d~~-ad--l~I~g~~~evl 167 (266)
+.+||++|+.|+-... .|...+...++ ++ |+++|.|++..|..... ++ +.|+-..|-+|
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~a~~~~l~irPGTD~AL 286 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNYLGCEHLYVNPQTDVPL 286 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhhccCceecccCCcHHHH
Confidence 5789999999997643 23322222222 23 79999999999987554 22 33554444433
No 241
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=33.71 E-value=1e+02 Score=30.92 Aligned_cols=77 Identities=8% Similarity=0.133 Sum_probs=51.9
Q ss_pred cEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEECcHHHH
Q 024533 89 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKV 166 (266)
Q Consensus 89 ~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g~~~ev 166 (266)
..|.|.....+.. ..+.+..+.|+|-++++-..+ +...|...|.|.| |..++.. +....+.| |+.++.
T Consensus 409 ~~v~f~gy~~e~d---l~~~~~~arl~id~s~~eg~~----~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li-~d~~~l 478 (519)
T TIGR03713 409 ERIAFTTLTNEED---LISALDKLRLIIDLSKEPDLY----TQISGISAGIPQI--NKVETDYVEHNKNGYII-DDISEL 478 (519)
T ss_pred cEEEEEecCCHHH---HHHHHhhheEEEECCCCCChH----HHHHHHHcCCCee--ecCCceeeEcCCCcEEe-CCHHHH
Confidence 4555655555433 335677888988888774433 2236889999987 9888764 55566766 999988
Q ss_pred HHHHHHHcc
Q 024533 167 IAGVMRHLN 175 (266)
Q Consensus 167 l~~L~~~L~ 175 (266)
-..|...|.
T Consensus 479 ~~al~~~L~ 487 (519)
T TIGR03713 479 LKALDYYLD 487 (519)
T ss_pred HHHHHHHHh
Confidence 877766653
No 242
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=32.88 E-value=61 Score=30.06 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=43.8
Q ss_pred hhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC----CCCCccEEEEC---cHHHHHHHHHHHc
Q 024533 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKASLVVHA---PVDKVIAGVMRHL 174 (266)
Q Consensus 102 ~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~----~d~~adl~I~g---~~~evl~~L~~~L 174 (266)
.+.+.+.++++|++||+|..-. .-...|.+.|++.|.+.+.|.....- +.....+.|-+ ..+.++.++.+.|
T Consensus 200 Q~a~~~La~~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l 278 (281)
T PF02401_consen 200 QEAARELAKEVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRL 278 (281)
T ss_dssp HHHHHHHHCCSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 3445556788999999999754 55567777788888888888755321 22333455543 3345555555544
No 243
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=32.85 E-value=3.1e+02 Score=23.52 Aligned_cols=59 Identities=7% Similarity=-0.055 Sum_probs=33.6
Q ss_pred ccEEEcCCCCChhc-hhHHHHHh-hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCC
Q 024533 88 DTVLDWEDALPPVE-MNPAEENC-RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 148 (266)
Q Consensus 88 P~Vv~FgE~lp~~~-~~~a~~~~-~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~ 148 (266)
.+++++......+. .+.....+ .+.|.+|+.+++..... .....+.+.|.|+|.+|...
T Consensus 35 ~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~--~~l~~~~~~~iPvv~~~~~~ 95 (272)
T cd06300 35 SEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALN--PVIEEACEAGIPVVSFDGTV 95 (272)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHCCCeEEEEecCC
Confidence 35555544433332 23333333 47899999887643211 12234567899999999764
No 244
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.83 E-value=61 Score=28.28 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=41.0
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCC---ccEEEECcH
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKK---ASLVVHAPV 163 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~---adl~I~g~~ 163 (266)
....+-|++|++-+|............|+.+|+++|.|-- ...+..+. +|+.|.=+.
T Consensus 105 ~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~ 165 (196)
T PRK10886 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPS 165 (196)
T ss_pred HcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCC
Confidence 3456789999999999988887877889999999888754 33444442 566655433
No 245
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=32.75 E-value=85 Score=27.78 Aligned_cols=54 Identities=22% Similarity=0.119 Sum_probs=41.8
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEEC
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 161 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g 161 (266)
.+.+-|++|++-.|....-.......|+++|+++|.|-- ..++..+.+|+.|.-
T Consensus 44 ~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 44 MVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence 456779999999999888888888889999998776644 455666677777654
No 246
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=32.75 E-value=50 Score=30.28 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=41.5
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~ 160 (266)
.+.+-|++|++-.|..........+.|+++|+++|.|--. .++..+.+|+.+.
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~ 139 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLD 139 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEE
Confidence 4567799999999998888888888899999998887654 4566667777764
No 247
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.68 E-value=25 Score=28.42 Aligned_cols=32 Identities=31% Similarity=0.643 Sum_probs=17.6
Q ss_pred ceeecCCCCcccchh-hHHHHhhccCCCCCCCCCCCCCc
Q 024533 48 FREICPSCGVEYMRD-FEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~-~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
...+| .|++.+..+ ....... ....|| .||+.
T Consensus 69 ~~~~C-~Cg~~~~~~~~~~~~~~---~~~~CP--~Cgs~ 101 (124)
T PRK00762 69 VEIEC-ECGYEGVVDEDEIDHYA---AVIECP--VCGNK 101 (124)
T ss_pred eeEEe-eCcCcccccccchhccc---cCCcCc--CCCCC
Confidence 35789 999876543 1111100 013598 89964
No 248
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=32.58 E-value=2.6e+02 Score=23.99 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.5
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 148 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~ 148 (266)
..+|.+|+.|+... + .....+.+.|.++|.+|...
T Consensus 54 ~~vdgii~~~~~~~--~--~~~~~~~~~~ipvV~~~~~~ 88 (268)
T cd06270 54 RRCDALILHSKALS--D--DELIELAAQVPPLVLINRHI 88 (268)
T ss_pred cCCCEEEEecCCCC--H--HHHHHHhhCCCCEEEEeccC
Confidence 57999999986532 1 11344567899999999754
No 249
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.47 E-value=34 Score=28.07 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.5
Q ss_pred ceeecCCCCcccchh
Q 024533 48 FREICPSCGVEYMRD 62 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~ 62 (266)
...+|..||+.+..+
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 457899999877543
No 250
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=32.15 E-value=66 Score=29.62 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=42.4
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEEC
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHA 161 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g 161 (266)
.+.+-|++|++-.|....-.-.....|+..|+++|.|--. .++..+.+|+.+.-
T Consensus 91 ~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~ 145 (326)
T PRK10892 91 MVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCV 145 (326)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEe
Confidence 4567799999999998888888888899999998877554 45667777877643
No 251
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=32.10 E-value=87 Score=30.58 Aligned_cols=81 Identities=15% Similarity=0.040 Sum_probs=51.6
Q ss_pred EEEcCCCCChhchhHHHHHh-hcCCEEEEEccCCCh----hhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHH
Q 024533 90 VLDWEDALPPVEMNPAEENC-RMADVVLCLGTSLQI----TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVD 164 (266)
Q Consensus 90 Vv~FgE~lp~~~~~~a~~~~-~~aDLlLvlGTSL~V----~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~ 164 (266)
.++|.+.|+++......+.. ...+...=|||.|.. .|.-+++ .|++.+|-.|.-.=+...-...++-.
T Consensus 309 ~Iv~S~~Lde~~i~~L~~~~~~~i~~~fGIGT~Lt~~~~~~p~l~~V-------~KLv~~~g~P~~KlSd~~~K~t~p~~ 381 (400)
T PRK05321 309 TLVFSDGLDFDKALELYRHFKGRIKLSFGIGTNLTNDFPGVKPLNIV-------IKLVECNGRPVAKLSDSPGKTMCDDP 381 (400)
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCcceEecCcceecCCCCCCCcceE-------EEEEEECCeeeEEecCCCcccCCCCH
Confidence 47789999887666655553 345667899999975 4555554 36777876554321111223445566
Q ss_pred HHHHHHHHHcccC
Q 024533 165 KVIAGVMRHLNLW 177 (266)
Q Consensus 165 evl~~L~~~L~~~ 177 (266)
+++..+.+.+|++
T Consensus 382 ~~~~~~~~~~~~~ 394 (400)
T PRK05321 382 EFLRYLRQVFGLP 394 (400)
T ss_pred HHHHHHHHHcCCC
Confidence 7788887788765
No 252
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=32.07 E-value=34 Score=28.27 Aligned_cols=29 Identities=34% Similarity=0.794 Sum_probs=20.9
Q ss_pred CCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcc
Q 024533 45 GNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 86 (266)
Q Consensus 45 Gnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~l 86 (266)
|.+.-.+|.+||+.|.- ....|+ .|+..-
T Consensus 25 ~kl~g~kC~~CG~v~~P-----------Pr~~Cp--~C~~~~ 53 (140)
T COG1545 25 GKLLGTKCKKCGRVYFP-----------PRAYCP--KCGSET 53 (140)
T ss_pred CcEEEEEcCCCCeEEcC-----------CcccCC--CCCCCC
Confidence 77888999999997621 123587 888653
No 253
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=32.07 E-value=53 Score=25.39 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=27.0
Q ss_pred cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC
Q 024533 111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP 150 (266)
Q Consensus 111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~ 150 (266)
..|+++..|++ .++..+...+.++|..+|..|...-.
T Consensus 59 ~~dvvVE~t~~---~~~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 59 DIDVVVECTSS---EAVAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp T-SEEEE-SSC---HHHHHHHHHHHHTTCEEEES-HHHHH
T ss_pred CCCEEEECCCc---hHHHHHHHHHHHCCCeEEEECHHHhh
Confidence 69999999655 66667767788999999999987643
No 254
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=31.93 E-value=13 Score=25.69 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=18.5
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
+...+|..|++..-..-.+. ...-+|| +|+..
T Consensus 2 ~~eiRC~~CnklLa~~g~~~-----~leIKCp--RC~ti 33 (51)
T PF10122_consen 2 LKEIRCGHCNKLLAKAGEVI-----ELEIKCP--RCKTI 33 (51)
T ss_pred CcceeccchhHHHhhhcCcc-----EEEEECC--CCCcc
Confidence 45679999998653311111 1123788 88854
No 255
>PLN02569 threonine synthase
Probab=31.86 E-value=28 Score=34.68 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=19.2
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
...+|..||++|+.+. ...+| .|||.|.
T Consensus 48 ~~l~C~~Cg~~y~~~~---------~~~~C---~cgg~l~ 75 (484)
T PLN02569 48 PFLECPLTGEKYSLDE---------VVYRS---KSGGLLD 75 (484)
T ss_pred cccEeCCCCCcCCCcc---------ccccC---CCCCeEE
Confidence 3589999999986442 23568 3887653
No 256
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=31.18 E-value=26 Score=31.65 Aligned_cols=16 Identities=6% Similarity=0.341 Sum_probs=13.5
Q ss_pred CcccccEEEcCCCCCh
Q 024533 84 SRLKDTVLDWEDALPP 99 (266)
Q Consensus 84 g~lrP~Vv~FgE~lp~ 99 (266)
|.+||.+++||+++-+
T Consensus 3 g~~rp~i~LFGdSItq 18 (245)
T KOG3035|consen 3 GPMRPRIVLFGDSITQ 18 (245)
T ss_pred CcccccEEEecchhhh
Confidence 4489999999999865
No 257
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.16 E-value=2.7e+02 Score=23.27 Aligned_cols=44 Identities=18% Similarity=0.057 Sum_probs=28.8
Q ss_pred hhHHHHHh-hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC
Q 024533 102 MNPAEENC-RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 102 ~~~a~~~~-~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
.+.....+ .++|.+|+.+++..... + ..+...|.++|.+|....
T Consensus 45 ~~~~~~~~~~~~d~iii~~~~~~~~~---~-~~~~~~~ipvv~~~~~~~ 89 (264)
T cd06267 45 REALELLLSRRVDGIILAPSRLDDEL---L-EELAALGIPVVLVDRPLD 89 (264)
T ss_pred HHHHHHHHHcCcCEEEEecCCcchHH---H-HHHHHcCCCEEEeccccc
Confidence 33344443 37899998888754332 2 346778999999987643
No 258
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.89 E-value=2.2e+02 Score=24.39 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=32.7
Q ss_pred CCCCChhchhHHHHHh-hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC
Q 024533 94 EDALPPVEMNPAEENC-RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 147 (266)
Q Consensus 94 gE~lp~~~~~~a~~~~-~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~ 147 (266)
.+.-++...+...+.+ ..+|.+|+..++-.. ...+...+...|.|+|.+|..
T Consensus 37 ~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~--~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 37 AQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS--LAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp STTTHHHHHHHHHHHHHTTESEEEEESSSTTT--THHHHHHHHHTTSEEEEESST
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH--HHHHHHHHhhcCceEEEEecc
Confidence 3333333444444444 568988877665422 223445678899999999999
No 259
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=30.38 E-value=87 Score=29.06 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=40.1
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC-CCCCCCCCCccEEEECc
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVHAP 162 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN-~~~t~~d~~adl~I~g~ 162 (266)
+.+-|++|.+-.|............|++.|+++|.|- ...++..+.+|+.|.-.
T Consensus 129 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~ 183 (299)
T PRK05441 129 LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVV 183 (299)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcC
Confidence 5678999999999888777777788999999966654 34455556677776543
No 260
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.25 E-value=77 Score=33.01 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=33.7
Q ss_pred HHHHhhcCCEEEEEccCCCh-hhcc---cchH-----------HHhcCC-----CEEEEECCCCCCCCCCcc
Q 024533 105 AEENCRMADVVLCLGTSLQI-TPAC---NLPL-----------KSLRGG-----GKIVIVNLQQTPKDKKAS 156 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V-~Pa~---~L~~-----------~a~~~g-----~~lViIN~~~t~~d~~ad 156 (266)
..+.++.||++|++|+-... .|.. .+.. .+.++| +++|+|++..|...+.+|
T Consensus 217 ~~~Die~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad 288 (676)
T cd02756 217 SYEDARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAE 288 (676)
T ss_pred CHHHHHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhh
Confidence 34568889999999997544 2321 1210 011234 699999999998766665
No 261
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=30.02 E-value=42 Score=29.08 Aligned_cols=31 Identities=39% Similarity=0.810 Sum_probs=21.8
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
..+|..|+-.|..+.... ..-.|| .||+.|.
T Consensus 113 ~y~C~~~~~r~sfdeA~~------~~F~Cp--~Cg~~L~ 143 (176)
T COG1675 113 YYVCPNCHVKYSFDEAME------LGFTCP--KCGEDLE 143 (176)
T ss_pred ceeCCCCCCcccHHHHHH------hCCCCC--CCCchhh
Confidence 468888988887765432 135798 8998764
No 262
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=29.39 E-value=71 Score=33.88 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=32.4
Q ss_pred HHHhhcCCEEEEEccCCChh-hc---ccc-hH-----HHhcC---------CCEEEEECCCCCCCCCCc
Q 024533 106 EENCRMADVVLCLGTSLQIT-PA---CNL-PL-----KSLRG---------GGKIVIVNLQQTPKDKKA 155 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-Pa---~~L-~~-----~a~~~---------g~~lViIN~~~t~~d~~a 155 (266)
.+.+.+||++|++|+..... |. ..+ +. .++++ |+++|+|++..+.....+
T Consensus 215 ~~D~~~Ad~iv~~G~Np~et~~~~~~~~~~~~~~~~~~ak~~~~~~g~~~~~~kiIvIDPr~t~ta~~a 283 (806)
T TIGR02693 215 YEDARLADTIVLWGANSYETQTNYFLNHWLPNLQGATVAKKKQAFPGEPAEPGYLIVVDPRRTSSYTVA 283 (806)
T ss_pred HHHHHhCCEEEEECCChHHhhhhhhHhhhhhhhhHHHHhhhhhcccccccCCceEEEEcCCCCchhhhh
Confidence 45678999999999985543 21 111 10 12332 579999999998864444
No 263
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=29.33 E-value=71 Score=29.65 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=42.8
Q ss_pred hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC----CCCCccEEEECc---HHHHHHHHHHHc
Q 024533 103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKASLVVHAP---VDKVIAGVMRHL 174 (266)
Q Consensus 103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~----~d~~adl~I~g~---~~evl~~L~~~L 174 (266)
+.+.+.+.++|++||+|..=+ .-...|...+.+.|.+.+.|+....- +.....+.|-+. .+.++.++.+.|
T Consensus 200 ~a~~~la~~vD~miVVGg~nS-sNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l 277 (280)
T TIGR00216 200 DAVKELAPEVDLMIVIGGKNS-SNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKI 277 (280)
T ss_pred HHHHHHHhhCCEEEEECCCCC-chHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 334556678999999998633 33456766778888788888754322 233334555443 344555555544
No 264
>PRK04351 hypothetical protein; Provisional
Probab=29.24 E-value=23 Score=29.69 Aligned_cols=38 Identities=34% Similarity=0.723 Sum_probs=25.1
Q ss_pred CCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccc
Q 024533 44 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 88 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP 88 (266)
-|.-+..+|.+|+..|.+-. .+ ....-+|. .|+|.|+.
T Consensus 107 ~~~~y~Y~C~~Cg~~~~r~R---r~--n~~~yrCg--~C~g~L~~ 144 (149)
T PRK04351 107 QKKNYLYECQSCGQQYLRKR---RI--NTKRYRCG--KCRGKLKL 144 (149)
T ss_pred CCceEEEECCCCCCEeeeee---ec--CCCcEEeC--CCCcEeee
Confidence 45667789999998875431 11 11234787 89998864
No 265
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=29.13 E-value=68 Score=25.00 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=31.0
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 145 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN 145 (266)
.+.+-|++|++--|....-.....+.|+++|+++|.|-
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 45677999999988887777777777888999988874
No 266
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=29.06 E-value=76 Score=32.48 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=44.2
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEEC
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g 161 (266)
..+.+-|++|++.-|....-...+...|+++|+++|.|--..++..+.+|+.|.-
T Consensus 511 ~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~ 565 (638)
T PRK14101 511 ALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALET 565 (638)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEc
Confidence 4567789999999998887777888889999999999987656666677877754
No 267
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=28.63 E-value=29 Score=28.39 Aligned_cols=36 Identities=36% Similarity=0.816 Sum_probs=23.0
Q ss_pred CcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccc
Q 024533 46 NSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 88 (266)
Q Consensus 46 nl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP 88 (266)
.-+...|..|+..+.+...+. ..--+|+ .|+|.|+.
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~-----~~~~~C~--~C~~~l~~ 155 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSK-----RKRYRCG--RCGGPLVQ 155 (157)
T ss_pred cceEEEcCCCCCEeeeecccc-----hhhEECC--CCCCEEEE
Confidence 345778999998775442221 1113698 89998864
No 268
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=28.45 E-value=1.3e+02 Score=29.34 Aligned_cols=80 Identities=13% Similarity=0.087 Sum_probs=48.4
Q ss_pred EEEcCCCCChhchhHHHHHhhc-CCEEEEEccCCCh----hhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHH
Q 024533 90 VLDWEDALPPVEMNPAEENCRM-ADVVLCLGTSLQI----TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVD 164 (266)
Q Consensus 90 Vv~FgE~lp~~~~~~a~~~~~~-aDLlLvlGTSL~V----~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~ 164 (266)
++.|.+.|+++......+.++. .....-|||.|.. .|.-+++ .|++.+|-+|.-.-+..--...++-.
T Consensus 309 ~iv~Sd~Lde~~i~~L~~~~~g~~~d~FGVGT~l~~d~~~~~~l~~V-------~Klv~~~g~P~~KlSd~~~K~t~~d~ 381 (394)
T TIGR01514 309 IIIFSDSLDVEKAIELSHYFKGRVKASFGIGTNLTNDFGKVEPLNIV-------IKLVECNGNPVAKLSDSPGKTMGEPA 381 (394)
T ss_pred EEEEcCCCCHHHHHHHHHHhcCCCceeEecCcceecCCCCCCCcceE-------EEEEEECCccceEecCCCcccCCCCH
Confidence 3568999997766555554433 3457789999987 5555554 36888887654421111223343445
Q ss_pred HHHHHHHHHccc
Q 024533 165 KVIAGVMRHLNL 176 (266)
Q Consensus 165 evl~~L~~~L~~ 176 (266)
+.+..+.+.+++
T Consensus 382 ~~~~~~~~~~~~ 393 (394)
T TIGR01514 382 TFLRALRELFDT 393 (394)
T ss_pred HHHHHHHHHhCC
Confidence 666667666654
No 269
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=28.23 E-value=83 Score=29.21 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=39.4
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEE
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVH 160 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~ 160 (266)
.+-|++|.+-.|....-.......|++.|+++|.|.- ..++..+.+|+.|.
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~ 177 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAIS 177 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEe
Confidence 5679999999999887777777788999999887754 44555666777765
No 270
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.89 E-value=50 Score=31.97 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=31.9
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccccEEEcCCCCC-hhchhHHHHHhhcCCEEEEEccCCCh
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALP-PVEMNPAEENCRMADVVLCLGTSLQI 124 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp-~~~~~~a~~~~~~aDLlLvlGTSL~V 124 (266)
..+|..|++.+... .+...+|| .||+.++--==+|..++. +++.++..+.+++. .+||--.+
T Consensus 240 ~~~c~~cg~~~~~~--------~~~~~~c~--~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~----~l~~~~~~ 302 (380)
T COG1867 240 IYHCSRCGEIVGSF--------REVDEKCP--HCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGL----ELGTKKRA 302 (380)
T ss_pred EEEcccccceeccc--------ccccccCC--cccccceeccCcccCcccCHHHHHHHHHHhhcc----ccccHHHH
Confidence 36899999433211 12346898 899854422224555554 34444433333322 66665333
No 271
>PLN02929 NADH kinase
Probab=27.56 E-value=97 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
+...++|+++++|--.++.-+++. + ..+.|++=||.+++
T Consensus 60 ~~~~~~Dlvi~lGGDGT~L~aa~~---~-~~~iPvlGIN~Gp~ 98 (301)
T PLN02929 60 QPIRDVDLVVAVGGDGTLLQASHF---L-DDSIPVLGVNSDPT 98 (301)
T ss_pred cccCCCCEEEEECCcHHHHHHHHH---c-CCCCcEEEEECCCc
Confidence 345678999999999888777665 3 56789999999974
No 272
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=27.19 E-value=53 Score=20.39 Aligned_cols=25 Identities=44% Similarity=0.975 Sum_probs=14.9
Q ss_pred ecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 51 ICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 51 ~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
.|..|+.+.... .. ..-+|+ .||..
T Consensus 2 ~C~~Cg~~~~~~-------~~-~~irC~--~CG~R 26 (32)
T PF03604_consen 2 ICGECGAEVELK-------PG-DPIRCP--ECGHR 26 (32)
T ss_dssp BESSSSSSE-BS-------TS-STSSBS--SSS-S
T ss_pred CCCcCCCeeEcC-------CC-CcEECC--cCCCe
Confidence 588999876422 11 234798 89864
No 273
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.43 E-value=47 Score=19.60 Aligned_cols=21 Identities=38% Similarity=1.053 Sum_probs=13.5
Q ss_pred ecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC
Q 024533 51 ICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 84 (266)
Q Consensus 51 ~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg 84 (266)
.|..|++++... ...|| .||-
T Consensus 2 ~CP~C~~~V~~~-----------~~~Cp--~CG~ 22 (26)
T PF10571_consen 2 TCPECGAEVPES-----------AKFCP--HCGY 22 (26)
T ss_pred cCCCCcCCchhh-----------cCcCC--CCCC
Confidence 588888876322 24687 7874
No 274
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=25.89 E-value=48 Score=27.36 Aligned_cols=34 Identities=21% Similarity=0.469 Sum_probs=18.6
Q ss_pred eeecCCCCcccc---hhhHHHHhh-----ccCCCCCCCCCCCCC
Q 024533 49 REICPSCGVEYM---RDFEIETIG-----MKKTPRRCSDVKCGS 84 (266)
Q Consensus 49 ~~~C~~C~~~~~---~~~~~~~~~-----~~~~~p~Cp~~~Cgg 84 (266)
..+|+.|+.... .+.....+. ..+..-.|+ .||-
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~--~C~k 132 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCP--GCGK 132 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECC--CCCC
Confidence 479999997542 221111121 122356798 8984
No 275
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=25.88 E-value=26 Score=32.15 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=40.5
Q ss_pred ceEEcCCCcceeecC-------------CCCcccchhhHHHHhhccCCCCCCCCCCCC--CcccccEEEcCCC
Q 024533 39 KLAELHGNSFREICP-------------SCGVEYMRDFEIETIGMKKTPRRCSDVKCG--SRLKDTVLDWEDA 96 (266)
Q Consensus 39 ~viElHGnl~~~~C~-------------~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cg--g~lrP~Vv~FgE~ 96 (266)
+=.++||-.+..+|+ +||+.|++|-...-+ ......+||...|. ..++|..+...+.
T Consensus 166 ~e~~i~~e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l-~~~~~i~CPv~gC~~~~~~~~~~l~~d~e 237 (262)
T KOG2979|consen 166 DEELIGQEVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQIL-CDEITIRCPVLGCENPYYIQPGHLDEDKE 237 (262)
T ss_pred HHHHhhhhhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHh-ccCceeecccccCCccccccccccCchHH
Confidence 445788999888884 599999988644332 23456789988898 6778888765433
No 276
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=25.76 E-value=44 Score=26.20 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=22.4
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
.+|||+||.|+|+---| .-.|.+++++..+..
T Consensus 39 ~dAeLviV~G~sipnd~--------~l~GKkv~i~d~~~A 70 (103)
T COG3925 39 NDAELVIVFGSSIPNDS--------ALNGKKVWIGDIERA 70 (103)
T ss_pred CcccEEEEeccccCCCc--------cccCceEEEecHHHH
Confidence 47899999999964322 236778887766543
No 277
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=25.27 E-value=1e+02 Score=26.98 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC---------C--CccEEEECcHHHHHHHHHHHc
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD---------K--KASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d---------~--~adl~I~g~~~evl~~L~~~L 174 (266)
-.+.++-.+|+|||+.- |.+..|. .+...+++++.|...+.... . ..--.+.|++.++|++|...-
T Consensus 41 ~~~~~~k~vLEIGt~~G-ySal~la-~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 41 VRLTRPKRVLEIGTFTG-YSALWLA-EALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG 117 (205)
T ss_dssp HHHHT-SEEEEESTTTS-HHHHHHH-HTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT
T ss_pred HHhcCCceEEEeccccc-cHHHHHH-HhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc
Confidence 34568999999999976 4444443 23456789999988764321 1 112357799999999987653
No 278
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=24.90 E-value=66 Score=29.01 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=28.5
Q ss_pred cCC-EEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533 111 MAD-VVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 145 (266)
Q Consensus 111 ~aD-LlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN 145 (266)
+.| .+||+|+.+--.--+.|+.+|++.|.++-+|.
T Consensus 75 ~~dVa~LVVGdPfgATTHsDlvlRAk~~~ipv~vIH 110 (272)
T KOG3123|consen 75 KEDVAFLVVGDPFGATTHSDLVLRAKELGIPVEVIH 110 (272)
T ss_pred hcceEEEEecCcccccchhhhheehhhcCCCeEEEe
Confidence 344 78999999887777889989999999887664
No 279
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=24.70 E-value=4.4e+02 Score=22.42 Aligned_cols=33 Identities=18% Similarity=-0.037 Sum_probs=22.6
Q ss_pred cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC
Q 024533 111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 147 (266)
Q Consensus 111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~ 147 (266)
..|.+|++|+... . .....+.+.|.|+|.++..
T Consensus 55 ~vdgiii~~~~~~-~---~~~~~l~~~~iPvv~~~~~ 87 (268)
T cd06273 55 GVDGLALIGLDHS-P---ALLDLLARRGVPYVATWNY 87 (268)
T ss_pred CCCEEEEeCCCCC-H---HHHHHHHhCCCCEEEEcCC
Confidence 5899999887532 1 2223456788999999864
No 280
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.06 E-value=4.5e+02 Score=22.32 Aligned_cols=48 Identities=6% Similarity=-0.083 Sum_probs=29.1
Q ss_pred ChhchhHHHHHhh--cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC
Q 024533 98 PPVEMNPAEENCR--MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 98 p~~~~~~a~~~~~--~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
+.+..+...+.+. .+|.+|++++... ......+.+.|.|+|.+|....
T Consensus 45 ~~~~~~~~~~~~~~~~~dgiii~~~~~~----~~~~~~~~~~~ipvV~~~~~~~ 94 (270)
T cd06294 45 EEELLEEVKKMIQQKRVDGFILLYSRED----DPIIDYLKEEKFPFVVIGKPED 94 (270)
T ss_pred cHHHHHHHHHHHHHcCcCEEEEecCcCC----cHHHHHHHhcCCCEEEECCCCC
Confidence 3334444455443 4898888764332 2223445678999999997643
No 281
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=23.99 E-value=60 Score=21.92 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=10.6
Q ss_pred eeecCCCCcccch
Q 024533 49 REICPSCGVEYMR 61 (266)
Q Consensus 49 ~~~C~~C~~~~~~ 61 (266)
+.+|..|+..|+-
T Consensus 1 ky~C~~CgyvYd~ 13 (47)
T PF00301_consen 1 KYQCPVCGYVYDP 13 (47)
T ss_dssp EEEETTTSBEEET
T ss_pred CcCCCCCCEEEcC
Confidence 3689999999864
No 282
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=23.90 E-value=4.7e+02 Score=24.93 Aligned_cols=80 Identities=11% Similarity=-0.030 Sum_probs=48.3
Q ss_pred ccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC---C----CCCccEEEE
Q 024533 88 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---K----DKKASLVVH 160 (266)
Q Consensus 88 P~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~---~----d~~adl~I~ 160 (266)
+.|.|.| .+|.+ ...+.++.||+++. ||.. .++..-+..|...|.++|.-|..... . +....+.+
T Consensus 305 ~~V~f~g-~v~~~---~l~~~l~~adv~v~--~s~~-E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 305 DKVEFVV-NAPFE---ELLEELSTASIGLH--TMWN-EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CeEEEec-CCCHH---HHHHHHHhCeEEEE--CCcc-CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe-
Confidence 4555554 45543 33456778898765 5544 66654455788899988888864321 1 23334444
Q ss_pred CcHHHHHHHHHHHcc
Q 024533 161 APVDKVIAGVMRHLN 175 (266)
Q Consensus 161 g~~~evl~~L~~~L~ 175 (266)
.+.+++...+.+.+.
T Consensus 377 ~d~~~la~ai~~ll~ 391 (419)
T cd03806 377 STAEEYAEAIEKILS 391 (419)
T ss_pred CCHHHHHHHHHHHHh
Confidence 588877777766654
No 283
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.63 E-value=2e+02 Score=22.62 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=33.7
Q ss_pred EEEEccCCChhhcccch-HHHhcCCCEEEEECCCCCCC------------CCCccEEEECcHHHHHHHHHHHc
Q 024533 115 VLCLGTSLQITPACNLP-LKSLRGGGKIVIVNLQQTPK------------DKKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 115 lLvlGTSL~V~Pa~~L~-~~a~~~g~~lViIN~~~t~~------------d~~adl~I~g~~~evl~~L~~~L 174 (266)
+-|+|.|..-..++... ...++.|.+++-||+..... +...|+.+-.-..+..+++++.+
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHH
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHH
Confidence 56899998765544443 33345777999999987441 13457776655555555555543
No 284
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=23.52 E-value=2.9e+02 Score=26.99 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=51.1
Q ss_pred hhHHHHHhhcCCEEEEEccCCCh--hhcccch--HHHhcCCCEEEEECCCCCCCCC------------Ccc-EEEECcHH
Q 024533 102 MNPAEENCRMADVVLCLGTSLQI--TPACNLP--LKSLRGGGKIVIVNLQQTPKDK------------KAS-LVVHAPVD 164 (266)
Q Consensus 102 ~~~a~~~~~~aDLlLvlGTSL~V--~Pa~~L~--~~a~~~g~~lViIN~~~t~~d~------------~ad-l~I~g~~~ 164 (266)
+....+.+++||++|..|-|+-. ++..++. ..|...|.+++.+-..--|+.. .++ +.++....
T Consensus 108 ~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD~~S 187 (426)
T PRK10017 108 FTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQDEQFNQLANYVFGHCDALILRESVS 187 (426)
T ss_pred HHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEccHHH
Confidence 45567789999999999987733 4443332 3467788999998877666532 233 34665444
Q ss_pred HHHHHHHHHcccCCCCc
Q 024533 165 KVIAGVMRHLNLWIPPY 181 (266)
Q Consensus 165 evl~~L~~~L~~~ip~~ 181 (266)
.++++.+|.+.|..
T Consensus 188 ---~~~Lk~lGv~~~~v 201 (426)
T PRK10017 188 ---LDLMKRSNITTAKV 201 (426)
T ss_pred ---HHHHHHhCCCccce
Confidence 46778888876543
No 285
>PRK08329 threonine synthase; Validated
Probab=23.14 E-value=49 Score=31.20 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=8.3
Q ss_pred eecCCCCcccc
Q 024533 50 EICPSCGVEYM 60 (266)
Q Consensus 50 ~~C~~C~~~~~ 60 (266)
.+|..||++|.
T Consensus 2 l~C~~Cg~~~~ 12 (347)
T PRK08329 2 LRCTKCGRTYE 12 (347)
T ss_pred cCcCCCCCCcC
Confidence 57888888774
No 286
>PRK04860 hypothetical protein; Provisional
Probab=23.10 E-value=78 Score=26.88 Aligned_cols=42 Identities=21% Similarity=0.429 Sum_probs=26.3
Q ss_pred CCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccc
Q 024533 44 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 88 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP 88 (266)
.|..+..+|. |+..+.....-..+......-+|. .|++.++.
T Consensus 114 ~~~~~~Y~C~-C~~~~~~~rrH~ri~~g~~~YrC~--~C~~~l~~ 155 (160)
T PRK04860 114 RGKTFPYRCK-CQEHQLTVRRHNRVVRGEAVYRCR--RCGETLVF 155 (160)
T ss_pred ccCEEEEEcC-CCCeeCHHHHHHHHhcCCccEECC--CCCceeEE
Confidence 3777889998 987443322223333334456898 89988764
No 287
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.99 E-value=99 Score=28.70 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC----CCCCccEEEECc---HHHHHHHHHHHc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKASLVVHAP---VDKVIAGVMRHL 174 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~----~d~~adl~I~g~---~~evl~~L~~~L 174 (266)
.+.+.+.++|++||+|..-+ .-...|...|.+.|.+...|.....- +.....+.|-+. .+.++.++.+.|
T Consensus 202 a~~~La~~vD~miVVGg~~S-sNT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l 278 (281)
T PRK12360 202 SAKELSKEVDVMIVIGGKHS-SNTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKI 278 (281)
T ss_pred HHHHHHHhCCEEEEecCCCC-ccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 34555678999999998632 33456666677777767777644321 233345556543 344555555544
No 288
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=22.77 E-value=3.7e+02 Score=23.82 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC---CCCccEEEE-CcHHHHHHHHHHHc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK---DKKASLVVH-APVDKVIAGVMRHL 174 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~---d~~adl~I~-g~~~evl~~L~~~L 174 (266)
..+.+..||+++.- |.....+..-...|...|.++|.-|...... +....+.+. ++.+++...|...+
T Consensus 257 ~~~~l~~ad~~i~p--s~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 257 MPAAYALADIVVSA--STEPEAFGRTAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred HHHHHHhCCEEEec--CCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 34567789987653 3222222223346788999998877654431 222345543 56776666654443
No 289
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=22.60 E-value=42 Score=24.05 Aligned_cols=38 Identities=24% Similarity=0.570 Sum_probs=23.4
Q ss_pred cCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 43 LHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
-.-+++..-|. ||..+... .+.+...+.+-+|| .|.-.
T Consensus 16 ~e~~~ftyPCP-CGDRFeIs--LeDl~~GE~VArCP--SCSLi 53 (67)
T COG5216 16 REEKTFTYPCP-CGDRFEIS--LEDLRNGEVVARCP--SCSLI 53 (67)
T ss_pred CCCceEEecCC-CCCEeEEE--HHHhhCCceEEEcC--CceEE
Confidence 33456667776 88876433 23444556677898 78644
No 290
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=22.57 E-value=80 Score=34.64 Aligned_cols=51 Identities=29% Similarity=0.623 Sum_probs=30.7
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCC
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSL 122 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL 122 (266)
-+|..||+++..+ .+.|| .||+.- |. +. .+.++...+.+.++|-++ |||-=
T Consensus 695 KrC~dcg~q~~~~-----------~~~cP--~Cgs~~---v~---d~--~~~ve~lRelA~EvDeVl-IgTDP 745 (1187)
T COG1110 695 KRCRDCGEQFVDS-----------EDKCP--RCGSRN---VE---DK--TETVEALRELALEVDEIL-IGTDP 745 (1187)
T ss_pred HHHhhcCceeccc-----------cccCC--CCCCcc---cc---cc--HHHHHHHHHHHhhcCEEE-EcCCC
Confidence 3699999987422 24798 899741 11 11 123455556677888764 67743
No 291
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=22.36 E-value=4e+02 Score=22.83 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=38.8
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC---CCCccEEEECc-HHHHHHHHHHH
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK---DKKASLVVHAP-VDKVIAGVMRH 173 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~---d~~adl~I~g~-~~evl~~L~~~ 173 (266)
...+.+..||++|....+ ..+..-+..|...|.++|.-+...... +....+.+... .+++...|.+.
T Consensus 268 ~~~~~~~~~di~i~~~~~---~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 338 (374)
T cd03801 268 DLPALYAAADVFVLPSLY---EGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRL 338 (374)
T ss_pred hHHHHHHhcCEEEecchh---ccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHH
Confidence 345567789998875554 222233346778899998877643331 13334555443 66666655544
No 292
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.26 E-value=4.2e+02 Score=22.46 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=24.5
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
..+|-+|+.++.-. . .....+.+.|.|+|.+|....
T Consensus 54 ~~vdgiIi~~~~~~-~---~~~~~l~~~~ipvV~~~~~~~ 89 (265)
T cd06299 54 QRVDGIIVVPHEQS-A---EQLEDLLKRGIPVVFVDREIT 89 (265)
T ss_pred cCCCEEEEcCCCCC-h---HHHHHHHhCCCCEEEEecccC
Confidence 36899988876422 1 123456678999999998753
No 293
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=22.21 E-value=1.2e+02 Score=27.34 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=41.3
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC---------C--CccEEEECcHHHHHHHHHHH
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD---------K--KASLVVHAPVDKVIAGVMRH 173 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d---------~--~adl~I~g~~~evl~~L~~~ 173 (266)
...++..+|+|||+.-+.- ..|. .+...+++++.|-..+.... . ..--.+.|++.++|++|...
T Consensus 76 ~~~~ak~iLEiGT~~GySa-l~la-~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~ 150 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSL-LATA-LALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIED 150 (247)
T ss_pred HHhCCCEEEEEeChhhHHH-HHHH-hhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhc
Confidence 3457889999999876433 3332 23345778888877653311 1 11234789999999998654
No 294
>PHA02768 hypothetical protein; Provisional
Probab=22.16 E-value=77 Score=22.26 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=20.1
Q ss_pred eecCCCCcccchhhHH-HHhhccCCCCCCCCCCCCC
Q 024533 50 EICPSCGVEYMRDFEI-ETIGMKKTPRRCSDVKCGS 84 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~-~~~~~~~~~p~Cp~~~Cgg 84 (266)
..|..||+.|.+.... ..+..+..+-+|. .|+-
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~--~C~k 39 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHNTNLKLS--NCKR 39 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcCCcccCC--cccc
Confidence 4899999998754322 2222233355787 7873
No 295
>PRK05638 threonine synthase; Validated
Probab=22.05 E-value=58 Score=31.78 Aligned_cols=11 Identities=55% Similarity=1.223 Sum_probs=8.5
Q ss_pred eecCCCCcccc
Q 024533 50 EICPSCGVEYM 60 (266)
Q Consensus 50 ~~C~~C~~~~~ 60 (266)
.+|..||++|.
T Consensus 2 l~C~~Cg~~~~ 12 (442)
T PRK05638 2 MKCPKCGREYN 12 (442)
T ss_pred eEeCCCCCCCC
Confidence 57888888775
No 296
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=22.04 E-value=2e+02 Score=26.81 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=47.9
Q ss_pred ccEEEcCCCCChhchhHHHHHhhcCCEEEEEcc----CCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcH
Q 024533 88 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGT----SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPV 163 (266)
Q Consensus 88 P~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGT----SL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~ 163 (266)
++|.+.|. .|.+ .....+..+|+.|+-=. +....|..- ..+...|.++|.-+...........+.+.++.
T Consensus 254 ~nV~~~G~-~~~~---~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl--~EylA~G~PVVat~~~~~~~~~~~~~~~~~d~ 327 (373)
T cd04950 254 PNVHYLGP-KPYK---ELPAYLAGFDVAILPFRLNELTRATSPLKL--FEYLAAGKPVVATPLPEVRRYEDEVVLIADDP 327 (373)
T ss_pred CCEEEeCC-CCHH---HHHHHHHhCCEEecCCccchhhhcCCcchH--HHHhccCCCEEecCcHHHHhhcCcEEEeCCCH
Confidence 78887764 3543 34567788998775211 111233222 25677899998766543322222234456678
Q ss_pred HHHHHHHHHHccc
Q 024533 164 DKVIAGVMRHLNL 176 (266)
Q Consensus 164 ~evl~~L~~~L~~ 176 (266)
+++...|.+.|..
T Consensus 328 ~~~~~ai~~~l~~ 340 (373)
T cd04950 328 EEFVAAIEKALLE 340 (373)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888776543
No 297
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=22.02 E-value=3e+02 Score=21.56 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=41.8
Q ss_pred hhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcccCCCCc
Q 024533 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPY 181 (266)
Q Consensus 102 ~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~ip~~ 181 (266)
+....+.+..||++|+-|-+-. +...| ...|..++..... +.++++|.+|.+.|.-.-|+|
T Consensus 54 ~~~~~~~l~~c~vvi~~~IG~~--a~~~L----~~~gI~~~~~~~~-------------~~v~eal~~l~~~~~~~~~~w 114 (119)
T TIGR02663 54 IAPKIEALKDCAILYCLAIGGP--AAAKV----VAAKIHPIKVNEP-------------ESISELLERLQKMLKGNPPPW 114 (119)
T ss_pred HHHHHHHhCCCcEEEEhhcCcc--HHHHH----HHcCCeeEecCCC-------------ccHHHHHHHHHHHHcCCCCHH
Confidence 3444566789999999766621 22222 4567766543111 458999999999998888888
Q ss_pred cc
Q 024533 182 VR 183 (266)
Q Consensus 182 ~~ 183 (266)
-+
T Consensus 115 ~~ 116 (119)
T TIGR02663 115 LR 116 (119)
T ss_pred HH
Confidence 65
No 298
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=21.94 E-value=73 Score=21.78 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=10.0
Q ss_pred eecCCCCcccch
Q 024533 50 EICPSCGVEYMR 61 (266)
Q Consensus 50 ~~C~~C~~~~~~ 61 (266)
.+|..||..|+-
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 579999999874
No 299
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=21.89 E-value=3.1e+02 Score=24.92 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=35.2
Q ss_pred cEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC
Q 024533 89 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 89 ~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
+|++|+..++.+. ..+.+..||+++.- |. ..++..-+..|...|.|+|.-|....
T Consensus 261 ~v~~~~~~~~~~~---~~~~~~~aDv~v~p--s~-~e~~g~~~lEA~a~G~PvI~s~~~~~ 315 (388)
T TIGR02149 261 GIIWINKMLPKEE---LVELLSNAEVFVCP--SI-YEPLGIVNLEAMACGTPVVASATGGI 315 (388)
T ss_pred ceEEecCCCCHHH---HHHHHHhCCEEEeC--Cc-cCCCChHHHHHHHcCCCEEEeCCCCH
Confidence 3677777776533 45567889988763 32 13443334578889999988776543
No 300
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=21.81 E-value=5.6e+02 Score=22.78 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=24.5
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 148 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~ 148 (266)
..+|.+|++++.... .......+...|.|+|.+|...
T Consensus 56 ~~vdgiii~~~~~~~--~~~~~~~~~~~giPvV~~~~~~ 92 (303)
T cd01539 56 KGVDLLAVNLVDPTA--AQTVINKAKQKNIPVIFFNREP 92 (303)
T ss_pred cCCCEEEEecCchhh--HHHHHHHHHHCCCCEEEeCCCC
Confidence 479999888765321 1222334567899999999753
No 301
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.80 E-value=49 Score=32.55 Aligned_cols=39 Identities=21% Similarity=0.564 Sum_probs=24.0
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccccc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 89 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lrP~ 89 (266)
...|+.|.+.|..-....-+......-+|. .|+|.|.-+
T Consensus 128 ~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~--~C~gelveD 166 (436)
T KOG2593|consen 128 GYVCPNCQKKYTSLEALQLLDNETGEFHCE--NCGGELVED 166 (436)
T ss_pred cccCCccccchhhhHHHHhhcccCceEEEe--cCCCchhcc
Confidence 367999999986433222222222345798 899987643
No 302
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=21.67 E-value=2e+02 Score=28.87 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=42.4
Q ss_pred HHHHhhcCCEEEEEccCCC------hhhcccchHH--HhcCCCEEEEECCCCCCC--CCCccEEEECcHHHHHHHHHHHc
Q 024533 105 AEENCRMADVVLCLGTSLQ------ITPACNLPLK--SLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~------V~Pa~~L~~~--a~~~g~~lViIN~~~t~~--d~~adl~I~g~~~evl~~L~~~L 174 (266)
|.-++++|||+|.+|.-+. +.-|+.-.++ |..+|+ +|-+...+... ...-.+.+.||+.+.|..+++.+
T Consensus 359 AN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rgg-IiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~ 437 (675)
T KOG4166|consen 359 ANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRGG-IIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVL 437 (675)
T ss_pred ehhhhhccceeEEecceeccccccchhhhChhhhhhhhcccCc-eEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHh
Confidence 3446789999999998543 3333322222 223444 56665554433 23345789999999998887754
No 303
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=21.35 E-value=3.6e+02 Score=25.23 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC---CCCCccEEE--ECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVV--HAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~---~d~~adl~I--~g~~~evl~~L~~~L~ 175 (266)
..+.+..||++++ +|..-.++..-...|...|.++|.-|....+ .+....+.+ .++.+++...|.+.+.
T Consensus 270 l~~~~~~aDv~v~--pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 270 MHNYYPLADLVVV--PSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred HHHHHHhCCEEEe--CCCCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 3445678898875 3432244444445788899999998876543 133344434 4677777766655543
No 304
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=21.30 E-value=1.2e+02 Score=28.46 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=42.8
Q ss_pred hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC----CCCCCccEEEECc---HHHHHHHHHHHc
Q 024533 103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT----PKDKKASLVVHAP---VDKVIAGVMRHL 174 (266)
Q Consensus 103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t----~~d~~adl~I~g~---~~evl~~L~~~L 174 (266)
+.+.+.+.++|++||+|..-. .-...|...+.+.|.+.+.|..... .+.....+.|-+. .+.++.++.+.|
T Consensus 202 ~a~~~La~~vD~miVVGg~~S-sNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 202 EAVKELAPQADLVIVVGSKNS-SNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred HHHHHHHhhCCEEEEECCCCC-ccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 345556678999999998533 3345666667777777777765432 1233344656543 344556665554
No 305
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=21.14 E-value=4.2e+02 Score=22.78 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=37.3
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC---CCCccEEEE-CcHHHHHHHHHHH
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK---DKKASLVVH-APVDKVIAGVMRH 173 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~---d~~adl~I~-g~~~evl~~L~~~ 173 (266)
..+.+..||+++.- |.. ..+..-+..|...|.++|.-+...... +....+.+. ++.+++...+.+.
T Consensus 257 ~~~~~~~adi~i~p--s~~-e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l 326 (359)
T cd03808 257 VPELLAAADVFVLP--SYR-EGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERL 326 (359)
T ss_pred HHHHHHhccEEEec--Ccc-cCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHH
Confidence 34567788987653 322 333333346788899988766543321 223345554 4577766666553
No 306
>COG1773 Rubredoxin [Energy production and conversion]
Probab=21.12 E-value=79 Score=22.23 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=11.6
Q ss_pred ceeecCCCCcccch
Q 024533 48 FREICPSCGVEYMR 61 (266)
Q Consensus 48 ~~~~C~~C~~~~~~ 61 (266)
.+.+|..||..|+-
T Consensus 2 ~~~~C~~CG~vYd~ 15 (55)
T COG1773 2 KRWRCSVCGYVYDP 15 (55)
T ss_pred CceEecCCceEecc
Confidence 46799999999864
No 307
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=20.61 E-value=71 Score=22.29 Aligned_cols=32 Identities=19% Similarity=0.526 Sum_probs=16.6
Q ss_pred eecCCCCcccchhhHHHHhhccCCCCCCCCCCC
Q 024533 50 EICPSCGVEYMRDFEIETIGMKKTPRRCSDVKC 82 (266)
Q Consensus 50 ~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~C 82 (266)
++...|++.|.++....-+. .....+||...|
T Consensus 25 V~s~~C~H~fek~aI~~~i~-~~~~~~CPv~GC 56 (57)
T PF11789_consen 25 VKSKKCGHTFEKEAILQYIQ-RNGSKRCPVAGC 56 (57)
T ss_dssp EEESSS--EEEHHHHHHHCT-TTS-EE-SCCC-
T ss_pred cCcCCCCCeecHHHHHHHHH-hcCCCCCCCCCC
Confidence 34557999998876555552 234567985556
No 308
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=20.33 E-value=56 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHcCCccE
Q 024533 2 PSITHMALVELEKAGILKF 20 (266)
Q Consensus 2 Pn~~H~aLa~L~~~g~l~~ 20 (266)
|+.+|..|..|+++|++..
T Consensus 40 ~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 40 TSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHCcCccC
Confidence 5678999999999998653
No 309
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=20.12 E-value=4.3e+02 Score=21.86 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=29.3
Q ss_pred chHHHhcCCCEEEEECCCCCCC-CCCc-cEEEECcHHHHHHHHHHHcccCC
Q 024533 130 LPLKSLRGGGKIVIVNLQQTPK-DKKA-SLVVHAPVDKVIAGVMRHLNLWI 178 (266)
Q Consensus 130 L~~~a~~~g~~lViIN~~~t~~-d~~a-dl~I~g~~~evl~~L~~~L~~~i 178 (266)
+...+++.|+++|++.+.+... +... --.-.....+++.++++..|+.+
T Consensus 99 ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 99 YIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 3344567889999998765431 1110 00112456788888999888544
No 310
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.08 E-value=1.3e+02 Score=29.32 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=29.8
Q ss_pred hHHHHHh-h-cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC
Q 024533 103 NPAEENC-R-MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 147 (266)
Q Consensus 103 ~~a~~~~-~-~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~ 147 (266)
+.|...+ . ++|++||||..=+ .-...|...|...|.+...|+..
T Consensus 278 Q~A~~~La~~~vD~miVVGG~nS-SNT~rL~eia~~~g~~ty~Ie~~ 323 (387)
T PRK13371 278 QDAMFSLVEEPLDLMVVIGGYNS-SNTTHLQEIAIERGIPSYHIDSP 323 (387)
T ss_pred HHHHHHHhhcCCCEEEEECCCCC-ccHHHHHHHHHhcCCCEEEECCH
Confidence 3344444 4 6999999998632 33456666777788788888754
No 311
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=20.07 E-value=1.8e+02 Score=20.80 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=19.6
Q ss_pred CCCceEEcCCCcc--eeecCCCCcccch
Q 024533 36 PREKLAELHGNSF--REICPSCGVEYMR 61 (266)
Q Consensus 36 ~~~~viElHGnl~--~~~C~~C~~~~~~ 61 (266)
+...++|.+|... ..+|...|.....
T Consensus 17 p~~slvef~g~~~PvtI~CP~HG~~~~s 44 (60)
T PF05265_consen 17 PHYSLVEFSGVATPVTIRCPKHGNFTCS 44 (60)
T ss_pred CCceEEEEeCCCCceEEECCCCCcEEec
Confidence 3478999999987 4579998876443
Done!