Query 024533
Match_columns 266
No_of_seqs 233 out of 1237
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k35_A NAD-dependent deacetyla 100.0 2.8E-53 9.7E-58 391.9 14.0 187 1-187 90-282 (318)
2 3pki_A NAD-dependent deacetyla 100.0 1.5E-52 5.1E-57 390.8 12.6 187 1-187 90-282 (355)
3 1yc5_A NAD-dependent deacetyla 100.0 1.2E-49 3.9E-54 356.8 16.0 171 1-176 75-245 (246)
4 3glr_A NAD-dependent deacetyla 100.0 2.5E-49 8.7E-54 361.4 16.0 172 1-177 91-266 (285)
5 1ma3_A SIR2-AF2, transcription 100.0 3.3E-48 1.1E-52 348.7 15.4 170 1-175 77-247 (253)
6 1m2k_A Silent information regu 100.0 6.1E-48 2.1E-52 346.3 15.5 167 1-175 75-241 (249)
7 1q1a_A HST2 protein; ternary c 100.0 6.9E-48 2.3E-52 352.7 15.8 174 1-177 88-280 (289)
8 4iao_A NAD-dependent histone d 100.0 1.1E-47 3.7E-52 369.8 17.6 179 1-182 251-462 (492)
9 2hjh_A NAD-dependent histone d 100.0 1.2E-47 4E-52 360.2 17.3 180 1-183 113-325 (354)
10 3riy_A NAD-dependent deacetyla 100.0 9.1E-48 3.1E-52 349.5 12.2 169 1-171 84-272 (273)
11 1q14_A HST2 protein; histone d 100.0 7E-47 2.4E-51 355.4 16.2 180 1-183 96-296 (361)
12 1j8f_A SIRT2, sirtuin 2, isofo 100.0 5E-47 1.7E-51 352.0 14.6 173 1-177 111-305 (323)
13 3u31_A SIR2A, transcriptional 100.0 7.7E-47 2.6E-51 345.9 14.4 168 1-174 108-279 (290)
14 1s5p_A NAD-dependent deacetyla 100.0 7E-47 2.4E-51 336.7 13.3 164 1-174 66-230 (235)
15 2c31_A Oxalyl-COA decarboxylas 94.8 0.095 3.3E-06 50.9 9.3 71 105-175 266-338 (568)
16 2q28_A Oxalyl-COA decarboxylas 94.2 0.14 4.7E-06 49.6 8.8 81 93-175 252-334 (564)
17 1ybh_A Acetolactate synthase, 93.6 0.2 6.7E-06 48.9 8.6 70 104-175 271-342 (590)
18 4feg_A Pyruvate oxidase; carba 93.4 0.17 5.7E-06 49.6 7.8 69 104-176 269-339 (603)
19 1o97_D Electron transferring f 93.4 0.1 3.6E-06 47.6 5.8 58 112-174 260-318 (320)
20 3lq1_A 2-succinyl-5-enolpyruvy 93.4 0.21 7.3E-06 48.6 8.4 68 106-175 284-353 (578)
21 2iht_A Carboxyethylarginine sy 93.0 0.18 6.2E-06 49.0 7.2 68 105-175 281-351 (573)
22 1ozh_A ALS, acetolactate synth 92.6 0.26 8.9E-06 47.8 7.7 67 105-175 268-336 (566)
23 2pgn_A Cyclohexane-1,2-dione h 92.6 0.23 8E-06 48.4 7.3 69 104-175 264-334 (589)
24 3eya_A Pyruvate dehydrogenase 92.3 0.24 8.3E-06 47.8 7.0 65 104-175 258-324 (549)
25 2uz1_A Benzaldehyde lyase; thi 91.9 0.26 8.8E-06 47.7 6.7 66 109-175 267-334 (563)
26 3hww_A 2-succinyl-5-enolpyruvy 91.7 0.36 1.2E-05 46.8 7.4 65 104-170 271-337 (556)
27 1efv_A Electron transfer flavo 91.6 0.31 1.1E-05 44.4 6.5 60 111-175 253-313 (315)
28 1efp_A ETF, protein (electron 91.5 0.3 1E-05 44.3 6.2 59 111-174 248-307 (307)
29 1q6z_A BFD, BFDC, benzoylforma 91.0 0.28 9.7E-06 47.0 5.8 71 104-175 259-330 (528)
30 2pan_A Glyoxylate carboligase; 90.7 0.33 1.1E-05 47.6 6.1 70 104-175 286-357 (616)
31 2x7j_A 2-succinyl-5-enolpyruvy 90.7 0.57 2E-05 45.8 7.8 66 107-175 306-373 (604)
32 1v5e_A Pyruvate oxidase; oxido 90.1 0.69 2.4E-05 45.1 7.8 67 104-175 262-331 (590)
33 1t9b_A Acetolactate synthase, 88.9 0.74 2.5E-05 45.9 7.1 71 105-175 350-429 (677)
34 1pno_A NAD(P) transhydrogenase 86.6 0.69 2.3E-05 38.6 4.4 87 88-174 72-179 (180)
35 1djl_A Transhydrogenase DIII; 85.0 0.75 2.6E-05 39.3 3.9 89 87-175 93-202 (207)
36 2fsv_C NAD(P) transhydrogenase 84.9 0.74 2.5E-05 39.2 3.8 88 87-174 94-202 (203)
37 2vk8_A Pyruvate decarboxylase 83.2 1.3 4.5E-05 42.6 5.4 68 104-175 271-338 (563)
38 2vbi_A Pyruvate decarboxylase; 82.8 1.4 4.9E-05 42.5 5.4 67 105-175 270-336 (566)
39 2vpz_A Thiosulfate reductase; 82.8 1.6 5.4E-05 43.8 6.0 53 109-161 197-252 (765)
40 2wvg_A PDC, pyruvate decarboxy 82.1 1.5 5E-05 42.4 5.2 67 105-175 270-336 (568)
41 1d4o_A NADP(H) transhydrogenas 82.0 2.2 7.5E-05 35.7 5.5 87 88-175 71-179 (184)
42 2bru_C NAD(P) transhydrogenase 82.0 1.6 5.4E-05 36.6 4.6 87 88-174 79-186 (186)
43 1ovm_A Indole-3-pyruvate decar 80.8 1.7 6E-05 41.6 5.2 67 104-175 269-335 (552)
44 2k5c_A Uncharacterized protein 80.4 1.1 3.9E-05 33.0 2.8 56 47-110 6-79 (95)
45 2e7z_A Acetylene hydratase AHY 80.0 1 3.5E-05 44.8 3.4 53 108-160 157-212 (727)
46 2vbf_A Branched-chain alpha-ke 77.4 1.2 4.1E-05 43.0 2.9 68 104-175 288-355 (570)
47 2ivf_A Ethylbenzene dehydrogen 77.4 1.3 4.5E-05 45.9 3.3 53 108-160 243-297 (976)
48 1h0h_A Formate dehydrogenase ( 76.0 1.8 6.1E-05 44.9 3.9 53 108-160 181-235 (977)
49 2iv2_X Formate dehydrogenase H 74.8 1.9 6.5E-05 42.8 3.6 55 107-161 162-218 (715)
50 2lcq_A Putative toxin VAPC6; P 73.4 1.2 4.1E-05 36.2 1.5 28 49-87 132-159 (165)
51 2nap_A Protein (periplasmic ni 73.0 2.3 7.9E-05 42.2 3.7 55 108-162 163-221 (723)
52 1kqf_A FDH-N alpha, formate de 67.3 2.2 7.6E-05 44.4 2.2 53 108-160 219-274 (1015)
53 1eu1_A Dimethyl sulfoxide redu 66.7 2.3 7.9E-05 42.7 2.1 53 108-160 174-237 (780)
54 1q16_A Respiratory nitrate red 65.8 2.1 7.2E-05 45.8 1.7 53 108-160 243-297 (1247)
55 2nxw_A Phenyl-3-pyruvate decar 64.9 7.3 0.00025 37.5 5.2 68 104-175 282-349 (565)
56 3trj_A Phosphoheptose isomeras 64.0 7.4 0.00025 32.3 4.5 58 107-164 110-171 (201)
57 1ti6_A Pyrogallol hydroxytrans 63.5 2.4 8.1E-05 43.3 1.5 53 108-160 205-265 (875)
58 3ml1_A NAPA, periplasmic nitra 61.1 4.2 0.00014 41.2 2.9 53 108-160 175-231 (802)
59 1tk9_A Phosphoheptose isomeras 59.4 5.6 0.00019 31.9 2.9 56 107-162 106-162 (188)
60 2kdx_A HYPA, hydrogenase/ureas 58.9 4.9 0.00017 30.9 2.3 27 48-85 72-99 (119)
61 3cf4_G Acetyl-COA decarboxylas 58.5 6.4 0.00022 31.9 3.0 62 107-174 103-167 (170)
62 6rxn_A Rubredoxin; electron tr 56.5 7 0.00024 25.4 2.4 15 47-61 2-16 (46)
63 3qrl_A Transcription initiatio 56.4 13 0.00045 29.8 4.5 47 203-253 32-84 (140)
64 3dnf_A ISPH, LYTB, 4-hydroxy-3 53.9 15 0.00052 33.1 4.9 86 88-174 184-278 (297)
65 3i9v_3 NADH-quinone oxidoreduc 53.4 9 0.00031 38.7 3.8 55 106-161 387-468 (783)
66 4ayb_P DNA-directed RNA polyme 52.3 6.5 0.00022 25.8 1.6 30 48-84 2-31 (48)
67 1tmo_A TMAO reductase, trimeth 51.6 5.1 0.00017 40.5 1.6 52 109-160 208-274 (829)
68 2gmg_A Hypothetical protein PF 50.6 9.4 0.00032 29.3 2.6 27 48-84 66-92 (105)
69 3a43_A HYPD, hydrogenase nicke 50.1 5.4 0.00018 31.8 1.2 22 41-62 62-83 (139)
70 2i2w_A Phosphoheptose isomeras 50.1 15 0.00051 30.3 4.1 57 107-163 127-184 (212)
71 2epq_A POZ-, at HOOK-, and zin 47.1 21 0.00073 21.0 3.5 39 43-83 4-45 (45)
72 2xig_A Ferric uptake regulatio 46.3 24 0.00081 27.9 4.5 47 4-61 63-111 (150)
73 3pwf_A Rubrerythrin; non heme 45.9 11 0.00038 30.9 2.5 26 48-85 137-162 (170)
74 2xbl_A Phosphoheptose isomeras 45.5 12 0.00041 30.1 2.7 58 107-164 112-170 (198)
75 2f62_A Nucleoside 2-deoxyribos 44.0 49 0.0017 26.7 6.2 74 101-175 57-159 (161)
76 3c2q_A Uncharacterized conserv 42.1 11 0.00038 34.5 2.0 65 107-175 269-339 (345)
77 3rls_A YAF9, protein AF-9 homo 42.0 37 0.0013 28.2 5.1 53 201-254 30-82 (175)
78 2yva_A DNAA initiator-associat 41.7 27 0.00091 28.1 4.3 58 107-164 105-166 (196)
79 1lko_A Rubrerythrin all-iron(I 41.1 11 0.00038 31.4 1.8 28 47-85 153-180 (191)
80 1x92_A APC5045, phosphoheptose 40.9 28 0.00095 28.1 4.3 58 107-164 109-170 (199)
81 3szu_A ISPH, 4-hydroxy-3-methy 40.6 27 0.00093 31.8 4.5 70 104-174 218-294 (328)
82 1mzb_A Ferric uptake regulatio 40.4 30 0.001 26.7 4.2 47 4-61 55-103 (136)
83 1ytl_A Acetyl-COA decarboxylas 39.7 11 0.00037 31.1 1.5 36 110-147 107-144 (174)
84 1twf_L ABC10-alpha, DNA-direct 39.2 18 0.00062 25.5 2.4 27 48-84 27-53 (70)
85 3h75_A Periplasmic sugar-bindi 38.7 1E+02 0.0036 26.5 8.0 48 101-151 49-99 (350)
86 1vd4_A Transcription initiatio 38.6 20 0.00068 23.2 2.5 40 44-85 9-48 (62)
87 1jeo_A MJ1247, hypothetical pr 37.7 26 0.0009 27.7 3.6 53 108-161 79-132 (180)
88 3etn_A Putative phosphosugar i 36.8 17 0.00058 30.4 2.3 55 107-161 102-159 (220)
89 3jy6_A Transcriptional regulat 36.5 1.5E+02 0.0052 24.3 8.5 57 110-174 62-118 (276)
90 3na7_A HP0958; flagellar bioge 36.3 26 0.00089 30.3 3.5 41 39-86 192-232 (256)
91 3sho_A Transcriptional regulat 36.0 25 0.00086 27.9 3.2 58 106-163 82-140 (187)
92 3cvj_A Putative phosphoheptose 34.9 16 0.00053 30.9 1.8 52 109-160 106-169 (243)
93 2w57_A Ferric uptake regulatio 34.5 43 0.0015 26.3 4.3 47 4-61 54-102 (150)
94 4rxn_A Rubredoxin; electron tr 34.2 45 0.0015 22.3 3.6 15 47-61 1-15 (54)
95 1m3s_A Hypothetical protein YC 34.1 29 0.001 27.5 3.3 52 108-159 76-128 (186)
96 2gnr_A Conserved hypothetical 33.7 16 0.00055 29.2 1.6 29 44-85 42-70 (145)
97 2xhz_A KDSD, YRBH, arabinose 5 33.2 29 0.00099 27.4 3.1 55 108-162 93-148 (183)
98 3oy2_A Glycosyltransferase B73 31.8 1.1E+02 0.0038 26.8 7.1 79 90-175 255-354 (413)
99 1e8j_A Rubredoxin; iron-sulfur 30.8 27 0.00091 23.1 2.0 15 47-61 1-15 (52)
100 2o03_A Probable zinc uptake re 30.4 57 0.002 24.8 4.3 47 4-61 47-95 (131)
101 3eyy_A Putative iron uptake re 30.3 34 0.0012 26.8 3.0 47 4-61 54-102 (145)
102 3irb_A Uncharacterized protein 29.7 21 0.00071 28.4 1.6 29 44-85 42-70 (145)
103 2v3b_B Rubredoxin 2, rubredoxi 29.1 32 0.0011 23.0 2.2 15 47-61 1-15 (55)
104 3h0g_L DNA-directed RNA polyme 29.1 34 0.0012 23.7 2.4 27 49-85 21-47 (63)
105 1vim_A Hypothetical protein AF 28.6 31 0.0011 28.1 2.6 53 109-161 87-140 (200)
106 1dx8_A Rubredoxin; electron tr 28.5 33 0.0011 24.1 2.3 16 46-61 4-19 (70)
107 3egc_A Putative ribose operon 28.5 2.1E+02 0.0072 23.5 8.0 36 110-149 63-98 (291)
108 1yuz_A Nigerythrin; rubrythrin 27.9 35 0.0012 28.7 2.8 27 47-85 169-195 (202)
109 2fe3_A Peroxide operon regulat 27.9 68 0.0023 24.9 4.4 47 4-61 58-105 (145)
110 3mwm_A ZUR, putative metal upt 27.8 52 0.0018 25.5 3.7 47 4-61 50-99 (139)
111 3fxa_A SIS domain protein; str 27.3 38 0.0013 27.3 2.9 54 108-161 89-143 (201)
112 3tb6_A Arabinose metabolism tr 27.0 1.8E+02 0.0063 23.8 7.4 40 110-149 70-110 (298)
113 1s24_A Rubredoxin 2; electron 26.9 31 0.0011 25.4 2.0 15 47-61 33-47 (87)
114 2epr_A POZ-, at HOOK-, and zin 26.6 83 0.0028 18.6 3.9 38 44-83 7-47 (48)
115 3jx9_A Putative phosphoheptose 26.4 31 0.001 28.3 2.1 43 108-150 74-117 (170)
116 1g8k_A Arsenite oxidase; molyb 26.1 38 0.0013 34.1 3.2 50 107-156 220-288 (825)
117 3k4h_A Putative transcriptiona 26.0 2.4E+02 0.0084 23.0 8.0 37 110-150 68-104 (292)
118 2kn9_A Rubredoxin; metalloprot 25.9 37 0.0013 24.6 2.2 15 47-61 25-39 (81)
119 3m9w_A D-xylose-binding peripl 25.5 2.9E+02 0.01 23.0 9.1 39 110-150 57-95 (313)
120 2em7_A Zinc finger protein 224 25.0 90 0.0031 18.0 3.8 21 43-63 6-26 (46)
121 2el4_A Zinc finger protein 268 24.9 88 0.003 18.0 3.7 22 43-64 6-27 (46)
122 2ytn_A Zinc finger protein 347 24.6 95 0.0033 17.9 3.8 22 43-64 6-27 (46)
123 2epz_A Zinc finger protein 28 24.4 95 0.0032 17.9 3.8 22 43-64 6-27 (46)
124 4fyk_A Deoxyribonucleoside 5'- 24.4 78 0.0027 25.4 4.2 47 101-148 58-104 (152)
125 3fro_A GLGA glycogen synthase; 24.3 1.9E+02 0.0066 25.0 7.3 81 89-175 311-394 (439)
126 2eml_A Zinc finger protein 28 23.9 1E+02 0.0034 17.8 3.8 21 43-63 6-26 (46)
127 3gv0_A Transcriptional regulat 23.9 3E+02 0.01 22.6 9.3 36 110-149 65-100 (288)
128 1moq_A Glucosamine 6-phosphate 23.6 31 0.0011 31.1 1.8 52 109-160 97-150 (368)
129 2em5_A ZFP-95, zinc finger pro 23.5 99 0.0034 17.9 3.7 21 43-63 6-26 (46)
130 2ema_A Zinc finger protein 347 23.4 1E+02 0.0036 17.7 3.8 21 44-64 7-27 (46)
131 3fj1_A Putative phosphosugar i 23.4 35 0.0012 30.6 2.1 52 109-160 89-141 (344)
132 2emy_A Zinc finger protein 268 23.4 1E+02 0.0034 17.8 3.7 21 43-63 6-26 (46)
133 2ytg_A ZFP-95, zinc finger pro 23.1 93 0.0032 17.9 3.5 21 43-63 6-26 (46)
134 2khz_A C-MYC-responsive protei 23.0 2.1E+02 0.0071 22.7 6.6 72 102-175 68-150 (165)
135 3os4_A Naprtase, nicotinate ph 23.0 68 0.0023 29.9 4.1 81 90-177 310-395 (407)
136 4aay_A AROA; oxidoreductase, r 22.9 27 0.00092 35.6 1.4 50 106-155 223-291 (845)
137 2emf_A Zinc finger protein 484 22.6 1.1E+02 0.0037 17.7 3.8 20 44-63 7-26 (46)
138 2ely_A Zinc finger protein 224 22.5 95 0.0032 18.0 3.5 20 44-63 7-26 (46)
139 2ep2_A Zinc finger protein 484 22.5 1E+02 0.0036 17.7 3.7 20 44-63 7-26 (46)
140 2em9_A Zinc finger protein 224 22.4 1.2E+02 0.004 17.4 3.9 20 44-63 7-26 (46)
141 2en1_A Zinc finger protein 224 22.4 1E+02 0.0036 17.7 3.7 21 44-64 7-27 (46)
142 2em8_A Zinc finger protein 224 22.3 93 0.0032 18.0 3.4 21 43-63 6-26 (46)
143 3huu_A Transcription regulator 22.3 2.7E+02 0.0091 23.2 7.5 35 110-148 82-116 (305)
144 2eov_A Zinc finger protein 484 22.2 1E+02 0.0034 17.7 3.6 21 43-63 6-26 (46)
145 4hl7_A Naprtase, nicotinate ph 22.2 63 0.0021 30.6 3.6 80 90-176 320-412 (446)
146 2ytk_A Zinc finger protein 347 22.2 1.1E+02 0.0037 17.6 3.7 21 43-63 6-26 (46)
147 2ene_A Zinc finger protein 347 22.1 1.1E+02 0.0038 17.6 3.7 20 44-63 7-26 (46)
148 2eop_A Zinc finger protein 268 22.1 1.1E+02 0.0036 17.6 3.7 22 43-64 6-27 (46)
149 2elz_A Zinc finger protein 224 22.0 1.1E+02 0.0038 17.6 3.8 20 44-63 7-26 (46)
150 2emk_A Zinc finger protein 28 22.0 1E+02 0.0036 17.8 3.6 21 43-63 6-26 (46)
151 2emm_A ZFP-95, zinc finger pro 21.6 1.1E+02 0.0038 17.5 3.7 20 44-63 7-26 (46)
152 2eme_A Zinc finger protein 473 21.5 1.3E+02 0.0043 17.3 3.9 21 43-63 6-26 (46)
153 2en8_A Zinc finger protein 224 21.4 1.1E+02 0.0039 17.5 3.7 22 43-64 6-27 (46)
154 3sho_A Transcriptional regulat 21.3 69 0.0023 25.2 3.3 51 96-146 23-73 (187)
155 2yso_A ZFP-95, zinc finger pro 21.3 1.2E+02 0.0041 17.4 3.8 21 43-63 6-26 (46)
156 3pfn_A NAD kinase; structural 21.2 91 0.0031 28.6 4.5 57 110-172 107-163 (365)
157 1m3s_A Hypothetical protein YC 21.1 79 0.0027 24.9 3.7 75 96-170 21-99 (186)
158 3flo_B DNA polymerase alpha ca 20.9 81 0.0028 26.7 3.7 16 74-89 102-117 (206)
159 2ytd_A Zinc finger protein 473 20.8 1.2E+02 0.004 17.5 3.6 21 43-63 6-26 (46)
160 2el6_A Zinc finger protein 268 20.8 1.3E+02 0.0044 17.3 3.8 20 44-63 7-26 (46)
161 3uug_A Multiple sugar-binding 20.7 3.7E+02 0.013 22.4 8.6 62 110-174 58-119 (330)
162 8abp_A L-arabinose-binding pro 20.7 2.7E+02 0.0092 22.9 7.2 36 110-147 56-91 (306)
163 2h1q_A Hypothetical protein; Z 20.6 47 0.0016 29.3 2.3 66 105-172 180-253 (270)
164 1x6e_A Zinc finger protein 24; 20.5 86 0.0029 20.3 3.2 40 43-84 8-50 (72)
165 2eq4_A Zinc finger protein 224 20.4 1.2E+02 0.0039 17.4 3.5 21 43-63 6-26 (46)
166 2en6_A Zinc finger protein 268 20.3 1.2E+02 0.0041 17.4 3.6 20 44-63 7-26 (46)
167 2ep0_A Zinc finger protein 28 20.2 1.3E+02 0.0045 17.2 3.8 21 43-63 6-26 (46)
168 2eq0_A Zinc finger protein 347 20.2 1.3E+02 0.0043 17.3 3.7 21 44-64 7-27 (46)
169 2emp_A Zinc finger protein 347 20.2 1E+02 0.0035 17.7 3.3 21 43-63 6-26 (46)
170 2eoe_A Zinc finger protein 347 20.2 1.2E+02 0.004 17.4 3.5 21 44-64 7-27 (46)
171 2h0a_A TTHA0807, transcription 20.0 2.7E+02 0.0093 22.5 7.0 35 110-148 54-88 (276)
172 3hba_A Putative phosphosugar i 20.0 92 0.0031 27.8 4.2 52 109-160 88-140 (334)
173 2emh_A Zinc finger protein 484 20.0 1.1E+02 0.0037 17.6 3.4 20 44-63 7-26 (46)
No 1
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-53 Score=391.90 Aligned_cols=187 Identities=51% Similarity=0.876 Sum_probs=167.5
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC-
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD- 79 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~- 79 (266)
+||.+|++|++|+++|++++||||||||||+|||+++++|+|||||++..+|.+|++.|.+++...........|.|+.
T Consensus 90 ~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~p~~~~C~~~ 169 (318)
T 3k35_A 90 RPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVA 169 (318)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSCEEEEECCC-
T ss_pred CCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccCCCCCcCccc
Confidence 6999999999999999999999999999999999988899999999999999999999876643322211112345641
Q ss_pred -----CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCC
Q 024533 80 -----VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKK 154 (266)
Q Consensus 80 -----~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~ 154 (266)
+.|||.|||+||||||++|.+.+++|.+++++||++|||||||+|+|+++|+..|.++|+++++||+++|+.|..
T Consensus 170 ~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~ 249 (318)
T 3k35_A 170 KARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRH 249 (318)
T ss_dssp -------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGG
T ss_pred ccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCc
Confidence 269999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccEEEECcHHHHHHHHHHHcccCCCCcccccce
Q 024533 155 ASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLF 187 (266)
Q Consensus 155 adl~I~g~~~evl~~L~~~L~~~ip~~~~~~~~ 187 (266)
+|++|+|+++++|++|++.|||+||+|+..+.+
T Consensus 250 adl~i~g~~~evl~~L~~~Lg~~iP~~~~~~~~ 282 (318)
T 3k35_A 250 ADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVL 282 (318)
T ss_dssp CSEEECSCHHHHHHHHHHHHTCCCCCCCSCBCC
T ss_pred ccEEEeCCHHHHHHHHHHHhCCCCCCCCCCcee
Confidence 999999999999999999999999999997643
No 2
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=1.5e-52 Score=390.79 Aligned_cols=187 Identities=51% Similarity=0.872 Sum_probs=168.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC-
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD- 79 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~- 79 (266)
+||.+|++|++|+++|++++||||||||||+|||+++++|+|||||++..+|.+|++.|.+++....+..+...+.|+.
T Consensus 90 ~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~ 169 (355)
T 3pki_A 90 RPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVA 169 (355)
T ss_dssp CCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCCSSCEEEEECCCC
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhcccCCCCCccccc
Confidence 6999999999999999999999999999999999987899999999999999999999877643322211112345631
Q ss_pred -----CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCC
Q 024533 80 -----VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKK 154 (266)
Q Consensus 80 -----~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~ 154 (266)
+.|||.|||+||||||++|.+.+++|.+++++||++|||||||+|+|+++|+..|.++|+++|+||+++|..|..
T Consensus 170 ~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~ 249 (355)
T 3pki_A 170 KARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRH 249 (355)
T ss_dssp CBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGG
T ss_pred cccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCc
Confidence 279999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEECcHHHHHHHHHHHcccCCCCcccccce
Q 024533 155 ASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLF 187 (266)
Q Consensus 155 adl~I~g~~~evl~~L~~~L~~~ip~~~~~~~~ 187 (266)
+|++|+|+++++|++|++.|||+||+|.....+
T Consensus 250 adl~i~g~a~evl~~L~~~Lg~~iP~~~~~~~~ 282 (355)
T 3pki_A 250 ADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVL 282 (355)
T ss_dssp CSEEECSCHHHHHHHHHHHTTCCCCCCCSCEEE
T ss_pred cCEEEeCCHHHHHHHHHHHhCCCCCCCCCCcee
Confidence 999999999999999999999999999986644
No 3
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=1.2e-49 Score=356.77 Aligned_cols=171 Identities=34% Similarity=0.566 Sum_probs=159.9
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++++||||||||||+|||+ ++|+|+|||++..+|..|++.|+.++..+.+. ....|+|+
T Consensus 75 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~-- 149 (246)
T 1yc5_A 75 KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE-SSDVPLCD-- 149 (246)
T ss_dssp CCCHHHHHHHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTT-TCSSCBCT--
T ss_pred CCCHHHHHHHHHHhcCCCceEEeccccchHhHcCC--CcEEEecCccceeEcCCCCCCCcHHHHHHHhc-cCCCCCCC--
Confidence 69999999999999999999999999999999998 78999999999999999999988776554432 23579999
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.|||+||||||++|++.++++.+++++||++|||||||+|+|+++|+..++.+|+++|+||+++++.|..+++.|+
T Consensus 150 ~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~ 229 (246)
T 1yc5_A 150 DCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYN 229 (246)
T ss_dssp TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred CCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEe
Confidence 89999999999999999998999999999999999999999999999999988888899999999999999999999999
Q ss_pred CcHHHHHHHHHHHccc
Q 024533 161 APVDKVIAGVMRHLNL 176 (266)
Q Consensus 161 g~~~evl~~L~~~L~~ 176 (266)
|+++++|++|++.||+
T Consensus 230 ~~~~~~l~~l~~~lg~ 245 (246)
T 1yc5_A 230 MDVVEFARRVMEEGGI 245 (246)
T ss_dssp SCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHcCC
Confidence 9999999999999986
No 4
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=2.5e-49 Score=361.40 Aligned_cols=172 Identities=25% Similarity=0.370 Sum_probs=155.7
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|+.+.....+. ...+|+|+
T Consensus 91 ~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~-~~~~P~C~-- 167 (285)
T 3glr_A 91 KPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM-ADRVPRCP-- 167 (285)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBCT--
T ss_pred CCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh-cCCCCCCC--
Confidence 699999999999999999999999999999999998899999999999999999999998765443332 34579998
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC----CCCCcc
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKAS 156 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~----~d~~ad 156 (266)
.|||.|||+||||||++|++.+ .+.+.+.+||++|||||||+|+|++.|+.. .+.|+++|+||++++. .+..+|
T Consensus 168 ~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDlllviGTSl~V~Paa~l~~~-~~~~~~~v~IN~~~~~~~~~~~~~~d 245 (285)
T 3glr_A 168 VCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADLLLILGTSLEVEPFASLTEA-VRSSVPRLLINRDLVGPLAWHPRSRD 245 (285)
T ss_dssp TTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSEEEEESCCCCEETTGGGGGS-SCTTSCEEEEESSCCTHHHHSCCTTE
T ss_pred CCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCEEEEeCCCCccccHHHHHHH-HhCCCcEEEECCCCcCccccCCCCcc
Confidence 8999999999999999998876 567788999999999999999999999964 5678899999999996 467899
Q ss_pred EEEECcHHHHHHHHHHHcccC
Q 024533 157 LVVHAPVDKVIAGVMRHLNLW 177 (266)
Q Consensus 157 l~I~g~~~evl~~L~~~L~~~ 177 (266)
+.+.|+|++++++|++.|||+
T Consensus 246 ~~~~g~~~~~~~~L~~~lgw~ 266 (285)
T 3glr_A 246 VAQLGDVVHGVESLVELLGWT 266 (285)
T ss_dssp EEEESCHHHHHHHHHHHHTCH
T ss_pred EEEcCCHHHHHHHHHHHhCCH
Confidence 999999999999999999994
No 5
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=3.3e-48 Score=348.73 Aligned_cols=170 Identities=32% Similarity=0.525 Sum_probs=157.8
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++++||||||||||++||+ ++|+|+|||++..+|..|++.|+.+.....+.. ...|+|+
T Consensus 77 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~-- 151 (253)
T 1ma3_A 77 EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFNK-GEIPRCR-- 151 (253)
T ss_dssp CCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEEGGGTHHHHHT-TCCCCCT--
T ss_pred CCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCC--CCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhcc-CCCCCCC--
Confidence 69999999999999999999999999999999998 799999999999999999999887765544432 3479998
Q ss_pred CCCC-cccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533 81 KCGS-RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV 159 (266)
Q Consensus 81 ~Cgg-~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I 159 (266)
.||| .|||+||||||++|++.++++.+++++||++|||||||+|+|+++|+..+...|+++|+||+++++.|..+++.|
T Consensus 152 ~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i 231 (253)
T 1ma3_A 152 KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKI 231 (253)
T ss_dssp TTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEE
T ss_pred CCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEE
Confidence 8999 999999999999999899999999999999999999999999999998888889999999999999999999999
Q ss_pred ECcHHHHHHHHHHHcc
Q 024533 160 HAPVDKVIAGVMRHLN 175 (266)
Q Consensus 160 ~g~~~evl~~L~~~L~ 175 (266)
+|+++++|++|++.|.
T Consensus 232 ~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 232 IGKAGEVLPKIVEEVK 247 (253)
T ss_dssp ESCHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHH
Confidence 9999999999998763
No 6
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=6.1e-48 Score=346.26 Aligned_cols=167 Identities=34% Similarity=0.541 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++++||||||||||+|||+ ++|+|+|||++..+|..|++.|+.++. + .....|+|+
T Consensus 75 ~Pn~~H~~La~L~~~g~~~~viTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~---~-~~~~~p~C~-- 146 (249)
T 1m2k_A 75 QPNKAHQAFAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSCNNSFEVESA---P-KIPPLPKCD-- 146 (249)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTC--CSEEETTEEEEEEEESSSSCEEECSSC---C-CSSSCCBCS--
T ss_pred CCCHHHHHHHHHHhCCCCcEEEECCccchhhhcCC--CcEEEecCCcceeEeCCCCCcccchhh---c-cCCCCCCCC--
Confidence 69999999999999999999999999999999997 799999999999999999998876543 1 122479998
Q ss_pred CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.|||.|||+||||||++|++.++++.+++++||++|||||||+|+|+++|+..+...|+++|+||+++++.|..+++.|.
T Consensus 147 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~ 226 (249)
T 1m2k_A 147 KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLR 226 (249)
T ss_dssp SSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred CCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEe
Confidence 89999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CcHHHHHHHHHHHcc
Q 024533 161 APVDKVIAGVMRHLN 175 (266)
Q Consensus 161 g~~~evl~~L~~~L~ 175 (266)
|+++++|++|++.|.
T Consensus 227 ~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 227 GKAGEVMDELVRHVR 241 (249)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988763
No 7
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=6.9e-48 Score=352.70 Aligned_cols=174 Identities=25% Similarity=0.377 Sum_probs=151.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhcc--CCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMK--KTPRRCS 78 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~--~~~p~Cp 78 (266)
+||++|++|++|+++|++++||||||||||+|||+++++|+|+|||++..+|.+|++.|+.+.....+... ...|+|+
T Consensus 88 ~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~ 167 (289)
T 1q1a_A 88 RPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD 167 (289)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCT
T ss_pred CCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCCCccCC
Confidence 69999999999999999999999999999999999888999999999999999999999877655554321 2579998
Q ss_pred CCCCCCcccccEEEcCCCCChhchhHH-------------HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533 79 DVKCGSRLKDTVLDWEDALPPVEMNPA-------------EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 145 (266)
Q Consensus 79 ~~~Cgg~lrP~Vv~FgE~lp~~~~~~a-------------~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN 145 (266)
.|||.|||+||||||++|++.++.+ .+.+.+||++|||||||+|+|+++|+..+. .|+++|+||
T Consensus 168 --~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~-~~~~~v~IN 244 (289)
T 1q1a_A 168 --VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCN 244 (289)
T ss_dssp --TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCCEETTTHHHHHSC-TTSEEEEES
T ss_pred --CCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCCChhhHHHHHHHHh-cCCCEEEEE
Confidence 8999999999999999998754433 234678999999999999999999997665 699999999
Q ss_pred CCCCC----CCCCccEEEECcHHHHHHHHHHHcccC
Q 024533 146 LQQTP----KDKKASLVVHAPVDKVIAGVMRHLNLW 177 (266)
Q Consensus 146 ~~~t~----~d~~adl~I~g~~~evl~~L~~~L~~~ 177 (266)
++++. .+..+|+.|+|+++++|++|++.|||+
T Consensus 245 ~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~~ 280 (289)
T 1q1a_A 245 LETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 280 (289)
T ss_dssp SSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTCH
T ss_pred CCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCCH
Confidence 99997 245689999999999999999999984
No 8
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-47 Score=369.77 Aligned_cols=179 Identities=22% Similarity=0.274 Sum_probs=158.4
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV 80 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~ 80 (266)
+||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|+.+...+.+.. ..+|.|+.|
T Consensus 251 ~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~-~~~P~Cp~C 329 (492)
T 4iao_A 251 IYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRN-LELPLCPYC 329 (492)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHT-TCCCBCTTT
T ss_pred CCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhc-cCCCCCccc
Confidence 5999999999999999999999999999999999988999999999999999999999887654443321 234666511
Q ss_pred ---------------------------------CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhc
Q 024533 81 ---------------------------------KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPA 127 (266)
Q Consensus 81 ---------------------------------~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa 127 (266)
.|||.|||+||||||++|++.++.+.+.+.+||++|||||||+|+|+
T Consensus 330 g~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPa 409 (492)
T 4iao_A 330 YKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPV 409 (492)
T ss_dssp HHHHHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETG
T ss_pred ccccccccccccccccccccccccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccch
Confidence 46699999999999999999899999999999999999999999999
Q ss_pred ccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcccCCCCcc
Q 024533 128 CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYV 182 (266)
Q Consensus 128 ~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~ip~~~ 182 (266)
++|+..+ ..++++|+||+++++.+ .+|+.|.|+|+++++.|++.|||+||.=.
T Consensus 410 A~Lv~~a-~~~~p~ViIN~ept~~~-~~Dl~l~G~cdevv~~L~~~LGw~ip~~~ 462 (492)
T 4iao_A 410 SEIVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHKK 462 (492)
T ss_dssp GGHHHHS-BTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHTTCCCCSTT
T ss_pred hhHHHHH-hcCCcEEEEcCCCCCCC-CccEEEeCCHHHHHHHHHHHhCCCCChHH
Confidence 9999764 57889999999999864 58999999999999999999999999544
No 9
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-47 Score=360.15 Aligned_cols=180 Identities=22% Similarity=0.273 Sum_probs=161.2
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC-
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD- 79 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~- 79 (266)
+||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|.+|++.|+.+...+.+.. ...|.|+.
T Consensus 113 ~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~-~~~P~Cp~C 191 (354)
T 2hjh_A 113 IYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRN-LELPLCPYC 191 (354)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHT-TCCCBCTTT
T ss_pred CCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhc-cCCCcCccc
Confidence 5999999999999999999999999999999999988999999999999999999999887765554432 24677762
Q ss_pred --------------------------------CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhc
Q 024533 80 --------------------------------VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPA 127 (266)
Q Consensus 80 --------------------------------~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa 127 (266)
+.|||.|||+||||||++|++.++.+.+++.+||++|||||||+|+|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL~V~Pa 271 (354)
T 2hjh_A 192 YKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPV 271 (354)
T ss_dssp HHHHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCCCEETG
T ss_pred cccccccccccccccccccccccccccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCCCchhH
Confidence 135799999999999999998889999999999999999999999999
Q ss_pred ccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcccCCCCccc
Q 024533 128 CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVR 183 (266)
Q Consensus 128 ~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~ip~~~~ 183 (266)
++|+..+ ..|+++|+||++++..+ .+|+.|.|+|+++|++|++.|||++|.+.-
T Consensus 272 a~lv~~~-~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~~~~ 325 (354)
T 2hjh_A 272 SEIVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHKKW 325 (354)
T ss_dssp GGHHHHS-CTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCSTTH
T ss_pred HHHHHHH-hcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCchHHH
Confidence 9999765 56889999999999875 589999999999999999999999998654
No 10
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=9.1e-48 Score=349.47 Aligned_cols=169 Identities=26% Similarity=0.443 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHH----cCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhH--HHHh------
Q 024533 1 MPSITHMALVELEK----AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFE--IETI------ 68 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~----~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~--~~~~------ 68 (266)
+||++|++|++|++ +|++++||||||||||+|||+ ++|+|||||++..+|.+|++.|..... ...+
T Consensus 84 ~Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~--~~vielHG~~~~~~C~~C~~~~~~~~~p~~~~~~~~~~~ 161 (273)
T 3riy_A 84 EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAP 161 (273)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCC
T ss_pred CCCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCC--CCEEEecCcCCeeEcCCCCCcccccccchhhhhhcccCC
Confidence 69999999999996 599999999999999999998 799999999999999999998754210 0000
Q ss_pred --------hccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCE
Q 024533 69 --------GMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGK 140 (266)
Q Consensus 69 --------~~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~ 140 (266)
-.....|+|+.+.|||.|||+||||||++|++.+++|.+++++|||+|||||||+|+|+++|+..+.++|++
T Consensus 162 ~~~~~~~~~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~ 241 (273)
T 3riy_A 162 EPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVP 241 (273)
T ss_dssp STTCCCCCCCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCC
T ss_pred cccccccccccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCE
Confidence 011246899322899999999999999999999999999999999999999999999999999888889999
Q ss_pred EEEECCCCCCCCCCccEEEECcHHHHHHHHH
Q 024533 141 IVIVNLQQTPKDKKASLVVHAPVDKVIAGVM 171 (266)
Q Consensus 141 lViIN~~~t~~d~~adl~I~g~~~evl~~L~ 171 (266)
+++||+++|+.|..+++.|+|+++++|++|+
T Consensus 242 ~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 242 VAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp EEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred EEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 9999999999999999999999999999885
No 11
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=7e-47 Score=355.38 Aligned_cols=180 Identities=24% Similarity=0.364 Sum_probs=155.6
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhcc--CCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMK--KTPRRCS 78 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~--~~~p~Cp 78 (266)
+||++|++|++|++.|++++||||||||||++||+++++|+|||||++..+|..|++.|+.+.....+... ..+|+||
T Consensus 96 ~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp 175 (361)
T 1q14_A 96 RPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD 175 (361)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCT
T ss_pred CCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHHhhcccCCCCCCc
Confidence 59999999999999999999999999999999999888999999999999999999999877655544322 2369998
Q ss_pred CCCCCCcccccEEEcCCCCChhchhHHHH-------------HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533 79 DVKCGSRLKDTVLDWEDALPPVEMNPAEE-------------NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 145 (266)
Q Consensus 79 ~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~-------------~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN 145 (266)
.|||.|||+||||||++|...+..+.+ .+.+||++|||||||+|+|+++|+..+. .|+++|+||
T Consensus 176 --~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l~~~~~-~g~~~v~IN 252 (361)
T 1q14_A 176 --VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCN 252 (361)
T ss_dssp --TTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCCSTTGGGHHHHSC-TTSEEEEES
T ss_pred --CCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCCCchhHHHHHHHHh-cCCeEEEEe
Confidence 899999999999999999877665554 4679999999999999999999997654 699999999
Q ss_pred CCCCC----CCCCccEEEECcHHHHHHHHHHHcccC--CCCccc
Q 024533 146 LQQTP----KDKKASLVVHAPVDKVIAGVMRHLNLW--IPPYVR 183 (266)
Q Consensus 146 ~~~t~----~d~~adl~I~g~~~evl~~L~~~L~~~--ip~~~~ 183 (266)
++++. .+..+++.|+|+++++|++|++.|||+ ++.+..
T Consensus 253 ~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~~~l~~~~~ 296 (361)
T 1q14_A 253 LETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQEDFEKILT 296 (361)
T ss_dssp SSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCccccccCcccccEEEeCCHHHHHHHHHHHcCChhHHHHHHH
Confidence 99996 246689999999999999999999984 444444
No 12
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=5e-47 Score=351.96 Aligned_cols=173 Identities=24% Similarity=0.382 Sum_probs=157.1
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCC--CCcccchhhHHHHhhccCCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS--CGVEYMRDFEIETIGMKKTPRRCS 78 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~--C~~~~~~~~~~~~~~~~~~~p~Cp 78 (266)
+||++|++|++|+++|++++||||||||||++||+++++|+|+|||++..+|.+ |++.|+.++..+.+. ...+|+|+
T Consensus 111 ~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~-~~~~P~C~ 189 (323)
T 1j8f_A 111 KPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF-SEVTPKCE 189 (323)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH-TTCCCBCT
T ss_pred CCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc-cCCCCCCc
Confidence 699999999999999999999999999999999998899999999999999999 999998776554443 34589999
Q ss_pred CCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC-----
Q 024533 79 DVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK----- 153 (266)
Q Consensus 79 ~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~----- 153 (266)
.|||.|||+||||||++|++.++.+.+++++||++|||||||+|+|+++|+..+.+ ++++|+||+++++.+.
T Consensus 190 --~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~-~~~~v~IN~~~t~~~~~~~~~ 266 (323)
T 1j8f_A 190 --DCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPL-STPRLLINKEKAGQSDPFLGM 266 (323)
T ss_dssp --TTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCT-TCCEEEEESSCCCCCCHHHHH
T ss_pred --CCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHc-CCcEEEEeCCCCCCCcccccc
Confidence 99999999999999999999899999999999999999999999999999977654 4567899999998654
Q ss_pred ---------------CccEEEECcHHHHHHHHHHHcccC
Q 024533 154 ---------------KASLVVHAPVDKVIAGVMRHLNLW 177 (266)
Q Consensus 154 ---------------~adl~I~g~~~evl~~L~~~L~~~ 177 (266)
.+|+.|.|+|+++|++|++.|||+
T Consensus 267 ~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~~~lgw~ 305 (323)
T 1j8f_A 267 IMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWK 305 (323)
T ss_dssp HHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHTTCH
T ss_pred cccccccccccccccceeEEEeCCHHHHHHHHHHHcCCc
Confidence 379999999999999999999984
No 13
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=7.7e-47 Score=345.93 Aligned_cols=168 Identities=30% Similarity=0.418 Sum_probs=150.3
Q ss_pred CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHH---hhccCCCCCC
Q 024533 1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIET---IGMKKTPRRC 77 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~---~~~~~~~p~C 77 (266)
+||++|++|++|++.|++++||||||||||+|||+ ++|+|||||++..+|..|++.|+.+..... ......+|+|
T Consensus 108 ~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~--~~vielHGs~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C 185 (290)
T 3u31_A 108 EINNGHVALSTLESLGYLKSVVTQNVDGLHEASGN--TKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPEC 185 (290)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBC
T ss_pred CCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCC--CcEEEecCCcCcceeCCCCCcCChhHhhhcccccccccCCCCC
Confidence 69999999999999999999999999999999998 799999999999999999998876543311 1112357999
Q ss_pred CCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC-Ccc
Q 024533 78 SDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK-KAS 156 (266)
Q Consensus 78 p~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~-~ad 156 (266)
+ |||.|||+||||||++|++.+++|.+++++||++|||||||+|+|+++|+..|+++|+++|+||+++|+.+. .++
T Consensus 186 ~---Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d 262 (290)
T 3u31_A 186 P---CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSD 262 (290)
T ss_dssp T---TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTTTCS
T ss_pred C---CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCccce
Confidence 6 999999999999999999999999999999999999999999999999999988999999999999999974 689
Q ss_pred EEEECcHHHHHHHHHHHc
Q 024533 157 LVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 157 l~I~g~~~evl~~L~~~L 174 (266)
+.|+|+++++++ +++.|
T Consensus 263 ~~i~g~a~~vl~-~~~~l 279 (290)
T 3u31_A 263 YHVCAKFSELTK-VANIL 279 (290)
T ss_dssp EEEESCGGGHHH-HHHHH
T ss_pred EEEECCHHHHHH-HHHHH
Confidence 999999999885 54544
No 14
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=7e-47 Score=336.74 Aligned_cols=164 Identities=23% Similarity=0.390 Sum_probs=141.0
Q ss_pred CCCHHHHHHHHHHH-cCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC
Q 024533 1 MPSITHMALVELEK-AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD 79 (266)
Q Consensus 1 ~Pn~~H~aLa~L~~-~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~ 79 (266)
+||++|++|++|++ .|++.+||||||||||++||. ++|+|||||++..+|.+|++.|+.+..+ .....|.|+
T Consensus 66 ~Pn~~H~~La~L~~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~----~~~~~p~c~- 138 (235)
T 1s5p_A 66 QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGN--TNVIHMHGELLKVRCSQSGQVLDWTGDV----TPEDKCHCC- 138 (235)
T ss_dssp CCCHHHHHHHHHHHHHGGGEEEEESCCSSHHHHHTC--CSCEETTEEEEEEEETTTCCEEECCSCC----CSSCCC----
T ss_pred CCCHHHHHHHHHHHhhCCceEEEeccccchhhhcCC--CcEEEecCCceEEEeCCCCCcccchhhc----cCCCCCCCC-
Confidence 69999999999999 699999999999999999995 7999999999999999999988765421 122345665
Q ss_pred CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533 80 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV 159 (266)
Q Consensus 80 ~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I 159 (266)
.|||.|||+||||||+ | +.++++.+++++||++|||||||+|+|+++|+..+.++|+++|+||+++++.|..+++.|
T Consensus 139 -~Cgg~lrP~vv~FGE~-p-~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i 215 (235)
T 1s5p_A 139 -QFPAPLRPHVVWFGEM-P-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKY 215 (235)
T ss_dssp -----CEEEEECCTTSC-C-SSHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEE
T ss_pred -CCCCeecCcEEEeCCC-H-HHHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEE
Confidence 8999999999999999 7 468999999999999999999999999999999888899999999999999999999999
Q ss_pred ECcHHHHHHHHHHHc
Q 024533 160 HAPVDKVIAGVMRHL 174 (266)
Q Consensus 160 ~g~~~evl~~L~~~L 174 (266)
+|+++++|++|++.|
T Consensus 216 ~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 216 YGPASQVVPEFVEKL 230 (235)
T ss_dssp ESCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHH
Confidence 999999999999876
No 15
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=94.85 E-value=0.095 Score=50.86 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=50.6
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|++|+.+.-.............+.++|.|+.++...++ ..++.|.|++.++|..|.+.+.
T Consensus 266 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 338 (568)
T 2c31_A 266 RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338 (568)
T ss_dssp HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence 3456789999999999986433211111111147789999998876543 4589999999999999988774
No 16
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=94.24 E-value=0.14 Score=49.60 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=54.1
Q ss_pred cCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHH
Q 024533 93 WEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGV 170 (266)
Q Consensus 93 FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L 170 (266)
|.|..|...=..+.+.+.+||++|++|+.+.-.....-. ....+.++|.|+.++...+ ...++.|.|++.++|..|
T Consensus 252 ~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 329 (564)
T 2q28_A 252 LEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGKK--GWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGM 329 (564)
T ss_dssp SCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGTT--TSCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHH
T ss_pred CCCCChhhcChHHHhHhhcCCEEEEECCccccccccccc--ccCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHH
Confidence 345554322122345678999999999998532221101 1124678999999887655 345899999999999999
Q ss_pred HHHcc
Q 024533 171 MRHLN 175 (266)
Q Consensus 171 ~~~L~ 175 (266)
.+.+.
T Consensus 330 ~~~l~ 334 (564)
T 2q28_A 330 LAELK 334 (564)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88764
No 17
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.62 E-value=0.2 Score=48.92 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=52.1
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|.+|+.+.-.-...+.. ...+.++|.|+.++...++ ..++.|.|++.++|..|.+.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 342 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE 342 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGGG--TTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCcccc--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 45667789999999999985332222211 2246789999999887653 4689999999999999987764
No 18
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=93.43 E-value=0.17 Score=49.62 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=52.0
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHccc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 176 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~~ 176 (266)
.+.+.+.+||++|++|+.+....+.. ....++++|.|+.++...++ ..++.|.||+.++|..|.+.+..
T Consensus 269 ~~~~~l~~aDlvl~iG~~~~~~~~~~----~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 339 (603)
T 4feg_A 269 PANEALAQADVVLFVGNNYPFAEVSK----AFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSE 339 (603)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTT----TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCEEEEECCCCCcccccc----cCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhhc
Confidence 35567789999999999987432211 12346889999999877653 46899999999999999887753
No 19
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=93.41 E-value=0.1 Score=47.63 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=48.3
Q ss_pred CCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHc
Q 024533 112 ADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 112 aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L 174 (266)
|+|.|.+|-|.+++-.+.| +.-..+|-||.++. +.=+.+|+.|-||.-+++|+|.++|
T Consensus 260 ~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp CSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred cceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHH
Confidence 4999999999999877666 23346888999875 4446889999999999999999886
No 20
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=93.40 E-value=0.21 Score=48.57 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=50.8
Q ss_pred HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533 106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
...+.+||++|.+|+.+.-.+...+. ....++++|.|+.++...+ ...++.|.|++.++|+.|.+.+.
T Consensus 284 ~~~~~~aDlvl~~G~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 284 IIDKLTPEVVIRFGSMPVSKPLKNWL--EQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp HHHHTCCSEEEEESSCCSCHHHHHHH--HHCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred ccccCCCCEEEEeCCcccchhHHHHH--hcCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 34577999999999976543333331 1235789999999987665 34689999999999999988764
No 21
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.99 E-value=0.18 Score=48.96 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=50.7
Q ss_pred HHHHhhcCCEEEEEccC-CChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTS-LQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTS-L~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|.+|+. +.-.....+. ...+.++|.||.++...++ ..++.|.|++.++|+.|.+.+.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ---KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHC---CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccC---CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 45677899999999998 6322222221 1146789999999887654 4689999999999999988774
No 22
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=92.63 E-value=0.26 Score=47.82 Aligned_cols=67 Identities=12% Similarity=0.294 Sum_probs=49.4
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+++||++|.+|+.........+ ...+.++|.|+.++...++ ..++.|.|++.++|..|.+.+.
T Consensus 268 ~~~~l~~aDlvl~lG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 268 GDRLLQLADLVICIGYSPVEYEPAMW----NSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp HHHHHHHCSEEEEESCCGGGSCGGGT----CCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHhCCEEEEECCCCCcCCcccc----CCCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 45577889999999995322222222 1236799999999887654 4689999999999999988764
No 23
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=92.56 E-value=0.23 Score=48.39 Aligned_cols=69 Identities=22% Similarity=0.153 Sum_probs=51.4
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+.+.-.... +. ....+.++|.||.++...++ ..++.|.|++.++|..|.+.+.
T Consensus 264 ~~~~~l~~aDlvl~iG~~~~~~~~~-~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 264 SANDMMAAADFVLVLGSRLSDWGIA-QG--YITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP 334 (589)
T ss_dssp HHHHHHHHCSEEEEESCCCCTTTTT-TT--TTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred HHHHHHhhCCEEEEECCCccccccc-cc--ccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence 3456778899999999987543322 21 11246789999999876653 4689999999999999988774
No 24
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=92.31 E-value=0.24 Score=47.82 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=49.9
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+.+....+ ...+.++|.|+.++...++ ..++.|.|++.++|..|.+.+.
T Consensus 258 ~~~~~~~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 258 SGFHTMMNADTLVLLGTQFPYRAF-------YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp HHHHHHHHCSEEEEESCCCCCGGG-------SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred HHHHHHHhCCEEEEECCCCCcccc-------CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 345677899999999998753221 2356789999998876553 4588999999999999987764
No 25
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=91.92 E-value=0.26 Score=47.71 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=50.2
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+||++|.+|+.+.-.....+-.. ...+.++|.||.++...++ ..++.|.|++.++|..|.+.+.
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQL-IPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA 334 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSS-SCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCccccccccccc-CCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence 7889999999999876554332111 1226799999999877653 4689999999999999988774
No 26
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=91.66 E-value=0.36 Score=46.76 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=47.4
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHH
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV 170 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L 170 (266)
.+.+.+.+||++|++|+.+.-.+...+.. .....++|.|+.++...++ ..++.|.|++.++|..|
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l 337 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQA--SCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELH 337 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHHH--HCCCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHS
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHHh--cCCCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhc
Confidence 35567789999999999986444333321 1233489999999877653 46899999999998865
No 27
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=91.58 E-value=0.31 Score=44.36 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=49.7
Q ss_pred cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
..+|.|.+|-|.+++-.+.| +.-..+|-||.++. +.=+.+|+.|-||.-+++|+|.++|.
T Consensus 253 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 253 APELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred CcceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 47899999999999888776 23346888999875 44468899999999999999999874
No 28
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=91.45 E-value=0.3 Score=44.27 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=48.6
Q ss_pred cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHc
Q 024533 111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L 174 (266)
..+|.|.+|-|.+++-.+.| +.-..+|-||.++. +.=+.+|+.|-||.-+++|+|.++|
T Consensus 248 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 47899999999999888776 23346888999875 4446889999999999999998764
No 29
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=90.95 E-value=0.28 Score=46.98 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=51.7
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC-CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK-KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~-~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+.+.-......... ...+.++|.|+.++...++ ..++.|.+++.++|..|.+.+.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQY-LKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCS-SCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCc-CCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 456678899999999998765554433110 1246789999998754221 5689999999999999988764
No 30
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=90.75 E-value=0.33 Score=47.60 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=50.8
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+.+.-.....+.. ...+.++|.|+.++...++ ..++.|.|++.++|..|.+.+.
T Consensus 286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 357 (616)
T 2pan_A 286 YGNATLLASDMVFGIGNRFANRHTGSVEK--YTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ 357 (616)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSHHH--HHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcccc--cCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 45667889999999999976322222211 2246789999998866543 4578899999999999987663
No 31
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=90.67 E-value=0.57 Score=45.77 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=48.1
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.++ +|++|++|+.+.-.....+. ....+.++|.|+.++...++ ..++.|.|++.++|..|.+.+.
T Consensus 306 ~~~~-~Dlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 373 (604)
T 2x7j_A 306 RKLR-PDVVIRFGPMPVSKPVFLWL--KDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT 373 (604)
T ss_dssp HHHC-CSEEEEESSCCSCHHHHHHH--HHCTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred hhcC-CCEEEEECCcCccHHHHHHH--hhCCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence 3444 89999999987533322221 11226789999999987654 4589999999999999988773
No 32
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=90.11 E-value=0.69 Score=45.07 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=50.8
Q ss_pred HHHHHhhcCCEEEEEccCCChhhc-ccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPA-CNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa-~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+.+..... ... . .+.++|.|+.++...++ ..++.|.|++..++..|.+.+.
T Consensus 262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~----~-~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 262 PANETILEADTVLFAGSNFPFSEVEGTF----R-NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTTTT----T-TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCEEEEECCCCcchhccccC----C-CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 456678899999999998854431 001 1 35789999998876653 4579999999999999998875
No 33
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=88.93 E-value=0.74 Score=45.93 Aligned_cols=71 Identities=14% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHhhcCCEEEEEccCCChhhcc---cchHHHh----cCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPAC---NLPLKSL----RGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~---~L~~~a~----~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~ 175 (266)
+...+.+||++|.+|+.+.-.-.. .+...++ .....+|.|+.++...++ ..++.|.|++..+|..|.+.+.
T Consensus 350 ~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 350 ANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred HHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 445678999999999987532222 2211222 233448888888776543 4589999999999999988764
No 34
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=86.62 E-value=0.69 Score=38.64 Aligned_cols=87 Identities=16% Similarity=0.353 Sum_probs=60.1
Q ss_pred ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-C---
Q 024533 88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-K--- 151 (266)
Q Consensus 88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-~--- 151 (266)
-+|++=+-.+|.+ +++.....+.+.|+.||+|..=.|.|++. ||-.-.-+-..+|++++.-.. +
T Consensus 72 mNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv 151 (180)
T 1pno_A 72 MNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGV 151 (180)
T ss_dssp HHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCC
T ss_pred ceEEEEeeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCC
Confidence 4677776777765 36667778899999999999999988764 331111122356666665432 1
Q ss_pred C-----CCccEEEECcHHHHHHHHHHHc
Q 024533 152 D-----KKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 152 d-----~~adl~I~g~~~evl~~L~~~L 174 (266)
+ +..+..+.||+.+.+.+|.+.|
T Consensus 152 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 152 ENELFFRNNTMMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp CCGGGTSTTEEEEESCHHHHHHHHHHHH
T ss_pred cCcceecCCceEEeccHHHHHHHHHHHh
Confidence 1 3457789999999999998875
No 35
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=85.05 E-value=0.75 Score=39.26 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=62.0
Q ss_pred cccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-C--
Q 024533 87 KDTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-K-- 151 (266)
Q Consensus 87 rP~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-~-- 151 (266)
..+|++=+-.+|.+ +++.....+.+.|+.||||..=.|.|++. ||-.-.-+-..+|++++.-.. +
T Consensus 93 hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAg 172 (207)
T 1djl_A 93 QLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAA 172 (207)
T ss_dssp HHHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTC
T ss_pred CCcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCC
Confidence 35777777778865 46667778999999999999999977763 332111122356666666433 1
Q ss_pred -C-----CCccEEEECcHHHHHHHHHHHcc
Q 024533 152 -D-----KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 152 -d-----~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+ +..+..+.||+.+.+.+|.+.|.
T Consensus 173 v~NpLF~~~nt~MlfGDAK~~~~~l~~~l~ 202 (207)
T 1djl_A 173 VDNPIFYKPNTAMLLGDAKKTCDALQAKVR 202 (207)
T ss_dssp CCCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred CcCcceecCCceEEeccHHHHHHHHHHHHH
Confidence 1 34567899999999999998874
No 36
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=84.89 E-value=0.74 Score=39.20 Aligned_cols=88 Identities=16% Similarity=0.344 Sum_probs=61.1
Q ss_pred cccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-C--
Q 024533 87 KDTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-K-- 151 (266)
Q Consensus 87 rP~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-~-- 151 (266)
..+|++=+-.+|.+ +++.....+.++|+.||||..=.|.|++. ||-.-.-+-..+|++.+.-.. +
T Consensus 94 hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAg 173 (203)
T 2fsv_C 94 HMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAG 173 (203)
T ss_dssp HHHHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTC
T ss_pred CccEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCC
Confidence 35777777778866 36667778899999999999999988764 331111122356666665433 1
Q ss_pred -C-----CCccEEEECcHHHHHHHHHHHc
Q 024533 152 -D-----KKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 152 -d-----~~adl~I~g~~~evl~~L~~~L 174 (266)
+ +..+..+.||+.+.+.+|.+.|
T Consensus 174 v~NpLF~~~nt~MlfGDAK~~~~~l~~~l 202 (203)
T 2fsv_C 174 VENELFFRNNTMMLFGDAKKMTEQIVQAM 202 (203)
T ss_dssp CCCGGGGSTTEEEEESCHHHHHHHHHHHC
T ss_pred CcCcceecCCceEEeccHHHHHHHHHHHh
Confidence 1 3457889999999999998875
No 37
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=83.17 E-value=1.3 Score=42.64 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+.+.-.+...+.. ...+.++|.||.++...++. .....++.++|..|.+.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 338 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFSY--SYKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTTIA 338 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTCC--CCCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccc--CCCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHhhc
Confidence 35567889999999999886554433311 12367899999998766542 3444567888888877653
No 38
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=82.80 E-value=1.4 Score=42.48 Aligned_cols=67 Identities=9% Similarity=0.189 Sum_probs=47.1
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|++|+.+.-.....+. ....+.++|.|+.++...++ .....-.+.++|..|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWS--AWPKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTT--SCCCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccc--ccCCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence 456788999999999987655443332 12246789999999876653 34555567888988887764
No 39
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=82.78 E-value=1.6 Score=43.80 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=40.3
Q ss_pred hhcCCEEEEEccCCChh-h--cccchHHHhcCCCEEEEECCCCCCCCCCccEEEEC
Q 024533 109 CRMADVVLCLGTSLQIT-P--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~-P--a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g 161 (266)
+++||++|++|+-.... | .......++++|+++|.|++..+.....+|.+|.-
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~i 252 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPI 252 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECC
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCC
Confidence 56899999999865442 2 22233457789999999999999888888988754
No 40
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=82.14 E-value=1.5 Score=42.43 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.+.+.+||++|++|+.+.-.....+. ....+.++|.|+.++...++ ......++.++|..|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 270 VEKTMKEADAVIALAPVFNDYSTTGWT--DIPDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp HHHHHHHCSEEEEESCCCBTTTTTTTT--CCCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccc--cCCCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence 455678899999999987644433331 11246789999998876653 34555568899999888764
No 41
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=82.00 E-value=2.2 Score=35.70 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=59.8
Q ss_pred ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chH-HHhcCCCEEEEECCCCCC-C--
Q 024533 88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPL-KSLRGGGKIVIVNLQQTP-K-- 151 (266)
Q Consensus 88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~-~a~~~g~~lViIN~~~t~-~-- 151 (266)
-+|++=+-.+|.+ +++.....+.+.|+.||+|..=.|.|++. ||- .+-+ -..+|++++.-.. +
T Consensus 71 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAg 149 (184)
T 1d4o_A 71 LNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAA 149 (184)
T ss_dssp HHHHHHHHTCCGGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGG-SSCEEEEESSSCCCTTC
T ss_pred ceEEEEEecCCHHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhh-CCEEEEEECCCCCCcCC
Confidence 3666666667765 36667778899999999999999977763 331 1212 2246666665433 1
Q ss_pred -C-----CCccEEEECcHHHHHHHHHHHcc
Q 024533 152 -D-----KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 152 -d-----~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+ +..+..+.||+.+.+.+|.+.+.
T Consensus 150 v~NpLF~~~nt~MlfGDAK~~~~~l~~~l~ 179 (184)
T 1d4o_A 150 VDNPIFYKPNTAMLLGDAKKTCDALQAKVR 179 (184)
T ss_dssp CCCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred CcCcceecCCceEEeccHHHHHHHHHHHHH
Confidence 1 34567899999999999988874
No 42
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=81.96 E-value=1.6 Score=36.59 Aligned_cols=87 Identities=17% Similarity=0.329 Sum_probs=57.8
Q ss_pred ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-C---
Q 024533 88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-K--- 151 (266)
Q Consensus 88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-~--- 151 (266)
-+|++=+-.+|.+ +++.....+.+.|+.||+|..=.|.|++. ||-.-.-+-..+|++++.-.. +
T Consensus 79 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv 158 (186)
T 2bru_C 79 MNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGV 158 (186)
T ss_dssp HHHHHHHHTCCTTTEEESCCCHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCC
T ss_pred ceEEEEecCCCHHHHhhHHHHhcccccCCEEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCC
Confidence 3566655566654 35667788999999999999999988764 331111122345666655432 1
Q ss_pred C-----CCccEEEECcHHHHHHHHHHHc
Q 024533 152 D-----KKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 152 d-----~~adl~I~g~~~evl~~L~~~L 174 (266)
+ +..+..+.||+.+.+.+|.+.|
T Consensus 159 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l 186 (186)
T 2bru_C 159 QNPLFFKENTHMLFGDAKASVDAILKAL 186 (186)
T ss_dssp SCTTTBSSSEEEECSCHHHHHHHHHHHC
T ss_pred cCcceecCCceEEeccHHHHHHHHHHhC
Confidence 1 3456789999999999998764
No 43
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=80.83 E-value=1.7 Score=41.61 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=46.3
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+.+...+...+.. ...+.++|.|+.++...++ ......++.++++.|.+ ++
T Consensus 269 ~~~~~l~~aD~vl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~-l~ 335 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTRFTDTLTAGFTH--QLTPAQTIEVQPHAARVGD--VWFTGIPMNQAIETLVE-LC 335 (552)
T ss_dssp HHHHHHHTSSEEEEESCCCCTTTTTTTCC--CCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--CCCCCeEEEEeCChheeCC--cccCCccHHHHHHHHHh-Cc
Confidence 45667889999999999987655544321 1235678999998876554 23344566888888877 54
No 44
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=80.39 E-value=1.1 Score=32.98 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=37.8
Q ss_pred cceeecCCCCcccchhhHHHHhhc------------------cCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHH
Q 024533 47 SFREICPSCGVEYMRDFEIETIGM------------------KKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEEN 108 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~------------------~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~ 108 (266)
-+...|+-||....+...++++-. .+-.-+|| .||.. |||-.+|.+.-++..+.
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP--~CgEE------FyG~~Lp~~EaeKVFEL 77 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP--VCGEE------FYGKTLPRREAEKVFEL 77 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT--TTCCE------EETTSSCTTTHHHHHHH
T ss_pred cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC--CccHH------HhcccCChHHHHHHHHH
Confidence 345789999998877665554311 11235798 89975 78999998776666665
Q ss_pred hh
Q 024533 109 CR 110 (266)
Q Consensus 109 ~~ 110 (266)
+.
T Consensus 78 LN 79 (95)
T 2k5c_A 78 LN 79 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 45
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=80.05 E-value=1 Score=44.81 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=39.4
Q ss_pred HhhcCCEEEEEccCCChh-h--cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQIT-P--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~-P--a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+-.... | .......|+++|+++|.|++..+.....+|.+|.
T Consensus 157 d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 157 SFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp CTTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred CcccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 367899999999976542 2 2223345677899999999998876667788874
No 46
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=77.44 E-value=1.2 Score=43.03 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=44.7
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+.+||++|++|+.+.-.....+.. ...+.++|.|+.++...++ ......++..+|+.|.+.++
T Consensus 288 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 355 (570)
T 2vbf_A 288 SLKNFVESADFILMLGVKLTDSSTGAFTH--HLDENKMISLNIDEGIIFN--KVVEDFDFRAVVSSLSELKG 355 (570)
T ss_dssp HHHHHHHHCSEEEEESCCCCGGGTTTTCC--CCCGGGEEEECSSCEEETT--EEECSSCHHHHHHTGGGCCS
T ss_pred HHHHHHHhCCEEEEECCCccccccccccc--CCCCCeEEEEeCCHHHhCC--eeecCCCHHHHHHHHHHhcc
Confidence 34567889999999999886554433311 1235678999998876554 24444567777777765543
No 47
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=77.35 E-value=1.3 Score=45.89 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=40.1
Q ss_pred HhhcCCEEEEEccCCCh--hhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQI--TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V--~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+-... .+.......|+++|+++|.|++..+.....+|++|.
T Consensus 243 D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~ 297 (976)
T 2ivf_A 243 NLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVP 297 (976)
T ss_dssp GGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred hHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEec
Confidence 35689999999986543 122333345778899999999999988788898874
No 48
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=76.05 E-value=1.8 Score=44.94 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=39.6
Q ss_pred HhhcCCEEEEEccCCChh-h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~-P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+..... | .......|+++|+++|.|++..|.....+|++|.
T Consensus 181 D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~ 235 (977)
T 1h0h_A 181 DLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAP 235 (977)
T ss_dssp GGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred HHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeec
Confidence 467899999999865432 2 1122235678899999999999988788888864
No 49
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=74.77 E-value=1.9 Score=42.83 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=39.5
Q ss_pred HHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCCCCCCCccEEEEC
Q 024533 107 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g 161 (266)
..+.+||++|++|+-... .|. ......++++|+++|.|++..+.....+|.+|.-
T Consensus 162 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~i 218 (715)
T 2iv2_X 162 NEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIAL 218 (715)
T ss_dssp GGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECC
T ss_pred hHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEecc
Confidence 346789999999986543 121 1222356789999999999998876677887753
No 50
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=73.42 E-value=1.2 Score=36.20 Aligned_cols=28 Identities=32% Similarity=0.792 Sum_probs=19.6
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 87 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr 87 (266)
..+|..||+.|... .....|| .||+.++
T Consensus 132 ~y~C~~Cg~~~~~~---------~~~~~Cp--~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL---------PPGGVCP--DCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSC---------CGGGBCT--TTCCBEE
T ss_pred EEECCCCCCcccCC---------CCCCcCC--CCCCcce
Confidence 56899999988532 1123799 9998754
No 51
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=73.01 E-value=2.3 Score=42.19 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=39.0
Q ss_pred HhhcCCEEEEEccCCChh-hc-ccchHHHhcC--CCEEEEECCCCCCCCCCccEEEECc
Q 024533 108 NCRMADVVLCLGTSLQIT-PA-CNLPLKSLRG--GGKIVIVNLQQTPKDKKASLVVHAP 162 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~-Pa-~~L~~~a~~~--g~~lViIN~~~t~~d~~adl~I~g~ 162 (266)
.+++||++|++|+-.... |. ......++++ |+++|.|++..+.....+|.+|.-.
T Consensus 163 d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~ir 221 (723)
T 2nap_A 163 DIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFR 221 (723)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCC
T ss_pred hHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecC
Confidence 467899999999965432 21 1112335555 9999999999998877888887543
No 52
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=67.28 E-value=2.2 Score=44.40 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=38.4
Q ss_pred HhhcCCEEEEEccCCCh-hh-cccchHHHh-cCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQI-TP-ACNLPLKSL-RGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V-~P-a~~L~~~a~-~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+-... .| .......|+ ++|+++|.|++..+.....+|++|.
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~ 274 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAP 274 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEEC
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeec
Confidence 46789999999986543 22 122233566 7899999999998876667787764
No 53
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=66.65 E-value=2.3 Score=42.69 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=38.2
Q ss_pred HhhcCCEEEEEccCCCh-hhc---------ccchHHHhcCCCEEEEECCCCCCCCCCc-cEEEE
Q 024533 108 NCRMADVVLCLGTSLQI-TPA---------CNLPLKSLRGGGKIVIVNLQQTPKDKKA-SLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V-~Pa---------~~L~~~a~~~g~~lViIN~~~t~~d~~a-dl~I~ 160 (266)
.+.+||++|++|+-... .|. ......++++|+++|.|++..+.....+ |.+|.
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~ 237 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVS 237 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEEC
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEee
Confidence 57899999999986544 222 1223456778999999999988765554 77765
No 54
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=65.83 E-value=2.1 Score=45.81 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=39.2
Q ss_pred HhhcCCEEEEEccCCCh--hhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQI--TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V--~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+-... .+.+.....++++|+++|.|++..+...+.+|++|.
T Consensus 243 D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~ 297 (1247)
T 1q16_A 243 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLA 297 (1247)
T ss_dssp GGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEEC
T ss_pred HHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEe
Confidence 45689999999997533 233333445777899999999998877667788764
No 55
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=64.90 E-value=7.3 Score=37.52 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=41.6
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~ 175 (266)
.+.+.+++||++|++|+.+.-.....+.. .....++|.|+.++....+. ....-...+++..|.+.+.
T Consensus 282 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 349 (565)
T 2nxw_A 282 EITRLVEESDGLFLLGAILSDTNFAVSQR--KIDLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERLP 349 (565)
T ss_dssp HHHHHHHTCSEEEEESCCBCSSTTSBCTT--TSCGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTSC
T ss_pred HHHHHHHhCCEEEEECCCccccccccccc--cCCCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhcc
Confidence 34567789999999999876555443321 11234688888776544332 3334455677777776553
No 56
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=64.04 E-value=7.4 Score=32.28 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=44.1
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC-CCCCCCCCCc---cEEEECcHH
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKA---SLVVHAPVD 164 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN-~~~t~~d~~a---dl~I~g~~~ 164 (266)
..+.+-|++|++-.|....-.......|+++|+++|.|- ....+..+.+ |+.|.-..+
T Consensus 110 ~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~ 171 (201)
T 3trj_A 110 ALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSD 171 (201)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCC
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCC
Confidence 346788999999999998888888888999999988884 4455555666 777654443
No 57
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=63.54 E-value=2.4 Score=43.28 Aligned_cols=53 Identities=8% Similarity=0.017 Sum_probs=37.3
Q ss_pred HhhcCCEEEEEccCCChhhcc-------cchHHHhcCCCEEEEECCCCCCCCCC-ccEEEE
Q 024533 108 NCRMADVVLCLGTSLQITPAC-------NLPLKSLRGGGKIVIVNLQQTPKDKK-ASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~-------~L~~~a~~~g~~lViIN~~~t~~d~~-adl~I~ 160 (266)
.+.+||++|++|+-....|.. .+...++++|+++|.|++..+..... +|++|.
T Consensus 205 ~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l~ 265 (875)
T 1ti6_A 205 GLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWFS 265 (875)
T ss_dssp HHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEEC
T ss_pred HHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEec
Confidence 478999999999987223431 12122778999999999998875544 577653
No 58
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=61.13 E-value=4.2 Score=41.22 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=37.7
Q ss_pred HhhcCCEEEEEccCCCh-hhc-ccchHHHh--cCCCEEEEECCCCCCCCCCccEEEE
Q 024533 108 NCRMADVVLCLGTSLQI-TPA-CNLPLKSL--RGGGKIVIVNLQQTPKDKKASLVVH 160 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~--~~g~~lViIN~~~t~~d~~adl~I~ 160 (266)
.+.+||++|++|+-... .|. ......++ ++|+++|.|++..+.....+|++|.
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~ 231 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGII 231 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEE
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEec
Confidence 56789999999997543 232 11112233 4799999999999988777888764
No 59
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=59.44 E-value=5.6 Score=31.90 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=41.8
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC-CCCCCCCCCccEEEECc
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVHAP 162 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN-~~~t~~d~~adl~I~g~ 162 (266)
..+.+-|++|++-.|....-.......|+++|+++|.|- ....+..+.+|+.|.-.
T Consensus 106 ~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~ 162 (188)
T 1tk9_A 106 ALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP 162 (188)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEES
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeC
Confidence 346778999999999988777777788899999988773 33455555677776544
No 60
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=58.95 E-value=4.9 Score=30.91 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=19.8
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCC-CCCCCCCCCc
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPR-RCSDVKCGSR 85 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p-~Cp~~~Cgg~ 85 (266)
-..+|.+||+.|..+ .... .|| .||+.
T Consensus 72 ~~~~C~~CG~~~e~~---------~~~~~~CP--~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN---------ALDYGVCE--KCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC---------CSTTCCCS--SSSSC
T ss_pred ceEEcCCCCCEEeCC---------CCCCCcCc--cccCC
Confidence 357899999988542 2245 798 99987
No 61
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=58.48 E-value=6.4 Score=31.87 Aligned_cols=62 Identities=8% Similarity=0.030 Sum_probs=35.6
Q ss_pred HHhhcCCEEEEEccCC--ChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEEC-cHHHHHHHHHHHc
Q 024533 107 ENCRMADVVLCLGTSL--QITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA-PVDKVIAGVMRHL 174 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL--~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g-~~~evl~~L~~~L 174 (266)
+.+++||++|++|+.+ .-.....+.. ... .++|.|+...... ....+.. ...+++..|.+.+
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~~~~--~~~-~~iI~i~~~~~~~---~~~~~~~l~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSAAKN--FSN-LKTIAIERGYIQN---ATMSFGNLSKADHYAALDELI 167 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHHHHH--HCC-CCEEECSSSCCTT---SSEECCCCCHHHHHHHHHHHH
T ss_pred HHhhcCCEEEEECCccCccccccccccc--cCC-CeEEEECCCcccc---hhhhhccCCHHHHHHHHHHHH
Confidence 4578899999999987 4333222211 123 6777776653321 1222222 4677888877654
No 62
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=56.50 E-value=7 Score=25.42 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=12.2
Q ss_pred cceeecCCCCcccch
Q 024533 47 SFREICPSCGVEYMR 61 (266)
Q Consensus 47 l~~~~C~~C~~~~~~ 61 (266)
|...+|..||..|+-
T Consensus 2 m~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDP 16 (46)
T ss_dssp CCCEEETTTCCEECG
T ss_pred CCEEECCCCCeEEeC
Confidence 456799999999863
No 63
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=56.44 E-value=13 Score=29.84 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=35.5
Q ss_pred cccee--EeeeccCCCCCCCCCceEEEee----cCCCCcchhccccCCCceEEeeec
Q 024533 203 YVKWA--LRVGSVHRPKAPSPFVQSVEVS----FSDRPDLKTAILNKQPFKLKRRKQ 253 (266)
Q Consensus 203 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 253 (266)
.-+|+ +.+.+.+|..-+..|+++|... |.+ + -+++.++||.+.++--
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p--~r~v~~pPF~v~e~GW 84 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--P--NRTFTDPPFRIEEQGW 84 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--C--EEEECSTTCCEEEEES
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--C--eEEEcCCCcEEEEEEe
Confidence 35899 7888888877666799999985 333 2 3588999999987643
No 64
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=53.91 E-value=15 Score=33.08 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=53.4
Q ss_pred ccEEEcCCCCC--hhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCC----CCCCCCccEEEEC
Q 024533 88 DTVLDWEDALP--PVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ----TPKDKKASLVVHA 161 (266)
Q Consensus 88 P~Vv~FgE~lp--~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~----t~~d~~adl~I~g 161 (266)
|++..|++==. ....+.+.+.+.++|++||+|..-. .-..+|.+.|.+.|.+-+.|.... ..+.....+.|.+
T Consensus 184 p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nS-SNT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGITA 262 (297)
T 3dnf_A 184 KEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNS-GNTRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGISA 262 (297)
T ss_dssp SEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTC-HHHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEEE
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCC-chhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEee
Confidence 45555544212 1223445566788999999998633 455677777888888888887542 2234455677765
Q ss_pred cH---HHHHHHHHHHc
Q 024533 162 PV---DKVIAGVMRHL 174 (266)
Q Consensus 162 ~~---~evl~~L~~~L 174 (266)
.+ +.++.++.+.|
T Consensus 263 GASTP~~li~eVi~~l 278 (297)
T 3dnf_A 263 GASTPDWIIEQVKSRI 278 (297)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 43 44666666665
No 65
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=53.39 E-value=9 Score=38.67 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHhhcCCEEEEEccCCCh-hhcccc-hHHH-------------------------hcCCCEEEEECCCCCCCCCCccEE
Q 024533 106 EENCRMADVVLCLGTSLQI-TPACNL-PLKS-------------------------LRGGGKIVIVNLQQTPKDKKASLV 158 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V-~Pa~~L-~~~a-------------------------~~~g~~lViIN~~~t~~d~~adl~ 158 (266)
...+++||++|++| -... .|.... ...| +++|+++|.|++..+.....+|.+
T Consensus 387 ~~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~ 465 (783)
T 3i9v_3 387 LEDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIH 465 (783)
T ss_dssp HHHHHHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEE
T ss_pred HHHHhhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcce
Confidence 34567899999999 5433 222111 1112 167899999999999988888887
Q ss_pred EEC
Q 024533 159 VHA 161 (266)
Q Consensus 159 I~g 161 (266)
+.-
T Consensus 466 l~i 468 (783)
T 3i9v_3 466 EVH 468 (783)
T ss_dssp EEC
T ss_pred Eec
Confidence 653
No 66
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.27 E-value=6.5 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=17.6
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 84 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg 84 (266)
....|.+||+++..++. + . -..-+|| .||=
T Consensus 2 ~iY~C~rCg~~fs~~el-~---~-lP~IrCp--yCGy 31 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQL-K---V-LPGVRCP--YCGY 31 (48)
T ss_dssp ---CCCCTTTTCCCCCS-C---C-CSSSCCT--TTCC
T ss_pred cEEEeeccCCCccHHHH-h---h-CCCcccC--ccCc
Confidence 34689999998865532 1 0 1234798 8983
No 67
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=51.58 E-value=5.1 Score=40.46 Aligned_cols=52 Identities=6% Similarity=0.004 Sum_probs=37.2
Q ss_pred hhcCCEEEEEccCCCh-hh---------cccchHHHhc---CCC-EEEEECCCCCCCCCCc-cEEEE
Q 024533 109 CRMADVVLCLGTSLQI-TP---------ACNLPLKSLR---GGG-KIVIVNLQQTPKDKKA-SLVVH 160 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V-~P---------a~~L~~~a~~---~g~-~lViIN~~~t~~d~~a-dl~I~ 160 (266)
+.+||++|++|+-... .| .......+++ +|+ ++|.|++..+.....+ |++|.
T Consensus 208 ~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~ 274 (829)
T 1tmo_A 208 LEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLY 274 (829)
T ss_dssp HHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEEC
T ss_pred HhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEec
Confidence 6899999999997543 12 2222234566 899 9999999988766666 77763
No 68
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=50.55 E-value=9.4 Score=29.25 Aligned_cols=27 Identities=33% Similarity=0.794 Sum_probs=18.3
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 84 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg 84 (266)
...+|.+||..| .+ .-..+.+|| .|++
T Consensus 66 ~p~~C~~CG~~F-~~-------~~~kPsrCP--~CkS 92 (105)
T 2gmg_A 66 KPAQCRKCGFVF-KA-------EINIPSRCP--KCKS 92 (105)
T ss_dssp CCCBBTTTCCBC-CC-------CSSCCSSCS--SSCC
T ss_pred ECcChhhCcCee-cc-------cCCCCCCCc--CCCC
Confidence 356899999987 11 112457898 8875
No 69
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=50.14 E-value=5.4 Score=31.78 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=14.7
Q ss_pred EEcCCCcceeecCCCCcccchh
Q 024533 41 AELHGNSFREICPSCGVEYMRD 62 (266)
Q Consensus 41 iElHGnl~~~~C~~C~~~~~~~ 62 (266)
+++.-.--..+|.+||+.+..+
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 62 IEFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEEEECCEEEETTTCCEEEGG
T ss_pred EEEEecCCcEECCCCCCEEecc
Confidence 3333334468999999987644
No 70
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=50.09 E-value=15 Score=30.34 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=43.3
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC-CCCCCCCCCccEEEECcH
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVHAPV 163 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN-~~~t~~d~~adl~I~g~~ 163 (266)
..+.+-|++|++-.|....-.......|+++|+++|.|- ....+..+.+|+.|.-..
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 456788999999999988777777778888999887764 344566677888876554
No 71
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=47.07 E-value=21 Score=21.00 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=23.7
Q ss_pred cCCCcceeecCCCCcccchhhHHH---HhhccCCCCCCCCCCCC
Q 024533 43 LHGNSFREICPSCGVEYMRDFEIE---TIGMKKTPRRCSDVKCG 83 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~~~~---~~~~~~~~p~Cp~~~Cg 83 (266)
.|-.-....|..|++.|.....+. .....+....|+ .||
T Consensus 4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~--~cg 45 (45)
T 2epq_A 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP--SSG 45 (45)
T ss_dssp CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCC--CCC
T ss_pred CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCc--CCC
Confidence 355555678999999886543322 122334456787 776
No 72
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.26 E-value=24 Score=27.87 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEc--CCCcceeecCCCCcccch
Q 024533 4 ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAEL--HGNSFREICPSCGVEYMR 61 (266)
Q Consensus 4 ~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viEl--HGnl~~~~C~~C~~~~~~ 61 (266)
..|+.|..|++.|.+..+-..| | ...+++ ++.-....|.+||+.++.
T Consensus 63 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 63 SVYRILNFLEKENFISVLETSK--------S---GRRYEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp HHHHHHHHHHHTTSEEEEEETT--------T---EEEEEESCSCCCEEEEETTTCCEEEE
T ss_pred hHHHHHHHHHHCCcEEEEEeCC--------C---ceEEEecCCCCceEEEECCCCCEEEe
Confidence 4688999999999887665443 1 123443 123356899999997654
No 73
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=45.92 E-value=11 Score=30.94 Aligned_cols=26 Identities=35% Similarity=0.843 Sum_probs=18.6
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
...+|..||..|.. ..+..|| .||..
T Consensus 137 ~~~~C~~CG~i~~~----------~~p~~CP--~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD----------EAPEYCP--VCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES----------CCCSBCT--TTCCB
T ss_pred CeeEeCCCCCeeCC----------CCCCCCC--CCCCC
Confidence 35679999998851 2344898 89954
No 74
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=45.54 E-value=12 Score=30.12 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=42.5
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEECcHH
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPVD 164 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g~~~ 164 (266)
..+.+-|++|++-.|....-.......|+++|+++|.|-- ...+..+.+|+.|.-..+
T Consensus 112 ~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 112 ALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 3467889999999999887777777788999998877743 344555567777765443
No 75
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=44.05 E-value=49 Score=26.71 Aligned_cols=74 Identities=7% Similarity=-0.005 Sum_probs=47.3
Q ss_pred chhHHHHHhhcCCEEEEE-----ccCCChhhcccchHHHhcCCCEEEEECCCCCC--------------------C-CCC
Q 024533 101 EMNPAEENCRMADVVLCL-----GTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--------------------K-DKK 154 (266)
Q Consensus 101 ~~~~a~~~~~~aDLlLvl-----GTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~--------------------~-d~~ 154 (266)
.++.-.+++.+||++|.+ |.....--+..+- .|...|.|++.+..+.-. . ...
T Consensus 57 i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiG-yA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~NL 135 (161)
T 2f62_A 57 IRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVG-CAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPFNL 135 (161)
T ss_dssp HHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHH-HHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSSCG
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHH-HHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCcchh
Confidence 345556788999999999 5455444444443 467789999998755210 0 000
Q ss_pred ---ccEEEECcHHHHHHHHHHHcc
Q 024533 155 ---ASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 155 ---adl~I~g~~~evl~~L~~~L~ 175 (266)
....+..+.++++..|.+.|.
T Consensus 136 Ml~~~~~~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 136 MLYDGVEVFDSFESAFKYFLANFP 159 (161)
T ss_dssp GGCCSSCEESSHHHHHHHHHHHSC
T ss_pred hhhhhheeeCCHHHHHHHHHHhhc
Confidence 012267888998888877753
No 76
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=42.05 E-value=11 Score=34.54 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC----C--CCccEEEECcHHHHHHHHHHHcc
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK----D--KKASLVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~----d--~~adl~I~g~~~evl~~L~~~L~ 175 (266)
+.++++|++|.|.|-|-..-..+|. ....+++.|...|... | ......|-.++..+|+.|.+.|.
T Consensus 269 ~~~~~a~~vimlaTmLHSIAtGNm~----Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 269 TTVMDKKMVIMLSTLLHSVATGNLM----PSYIKTVCVDIQPSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp HHHTTCSEEEEESCHHHHHHHHTTC----CTTSEEEEEESCHHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred HHhccCCchHHHHHHHHHHHhcccC----cccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHH
Confidence 3567899999999988776666663 2345678887776542 2 33467889999999999988874
No 77
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=41.98 E-value=37 Score=28.19 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=36.0
Q ss_pred CcccceeEeeeccCCCCCCCCCceEEEeecCCCCcchhccccCCCceEEeeecc
Q 024533 201 DKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQI 254 (266)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (266)
...-.|++-+.+.++..- ..|+++|....-..=.---.++.++||.+..+---
T Consensus 30 ~~TH~WtVyVr~~~~edi-s~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~GWG 82 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDI-SYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWG 82 (175)
T ss_dssp TCCEEEEEEEECGGGCCC-TTTEEEEEEECCTTSSSCEEEECSSSEEEEEEESS
T ss_pred CCcEEEEEEEECCCCCCh-hheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeEEe
Confidence 457889998888776543 36999999853322111135888999999877543
No 78
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=41.72 E-value=27 Score=28.08 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=43.0
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCC---ccEEEECcHH
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKK---ASLVVHAPVD 164 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~---adl~I~g~~~ 164 (266)
..+.+-|++|++-.|....-.......|+++|+++|.|--. .++..+. +|+.|.-...
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCS
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCC
Confidence 45678899999999999888888888899999998877433 3333344 7777765433
No 79
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.05 E-value=11 Score=31.39 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=19.7
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
+...+|..||..|..+ ..+..|| .||..
T Consensus 153 ~~~~~C~~CG~~~~g~---------~~p~~CP--~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGT---------GAPELCP--ACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEE---------ECCSBCT--TTCCB
T ss_pred CceEEECCCCCEeeCC---------CCCCCCC--CCcCC
Confidence 4468999999988632 1223898 89974
No 80
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=40.85 E-value=28 Score=28.09 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=43.1
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCC---ccEEEECcHH
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKK---ASLVVHAPVD 164 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~---adl~I~g~~~ 164 (266)
..+.+-|++|++-.|....-.......|+++|+++|.|-- ..++..+. +|+.|.-...
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 4567889999999999888777888889999999888733 23334455 7877765443
No 81
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=40.64 E-value=27 Score=31.83 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=46.1
Q ss_pred HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC----CCCCccEEEECcH---HHHHHHHHHHc
Q 024533 104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKASLVVHAPV---DKVIAGVMRHL 174 (266)
Q Consensus 104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~----~d~~adl~I~g~~---~evl~~L~~~L 174 (266)
.+.+.+.++|++||+|..-+ .-..+|.+.|.+.|.+-+.|.....- +.....+.|.+.+ +.++.++.+.|
T Consensus 218 av~~lA~~vD~miVVGg~nS-SNT~rL~eia~~~g~~ty~Ie~~~el~~~wl~g~~~VGITAGASTP~~lieeVi~~l 294 (328)
T 3szu_A 218 AVRALAEQAEVVLVVGSKNS-SNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARL 294 (328)
T ss_dssp HHHHHHHHCSEEEEECCTTC-HHHHHHHHHHHHTTCEEEEESSGGGCCHHHHTTCSEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEeCCCCC-chHHHHHHHHHHhCCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHHHH
Confidence 34456678999999998643 55567888888899888888754321 2344556676543 34555655554
No 82
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.39 E-value=30 Score=26.67 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcC--CCcceeecCCCCcccch
Q 024533 4 ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYMR 61 (266)
Q Consensus 4 ~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElH--Gnl~~~~C~~C~~~~~~ 61 (266)
..++.|..|++.|.+..+-..| | ...+++. ..-....|.+||+.++.
T Consensus 55 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~Y~~~~~~~H~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 55 TVYRVLTQFEAAGLVVRHNFDG--------G---HAVFELADSGHHDHMVCVDTGEVIEF 103 (136)
T ss_dssp HHHHHHHHHHHHTSEEEECSSS--------S---SCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHHHCCcEEEEEeCC--------C---ceEEEeCCCCcceEEEECCCCCEEEe
Confidence 4688899999998766543211 2 2344542 22346899999997654
No 83
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=39.73 E-value=11 Score=31.09 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=23.0
Q ss_pred hcCCEEEEEccCCC--hhhcccchHHHhcCCCEEEEECCC
Q 024533 110 RMADVVLCLGTSLQ--ITPACNLPLKSLRGGGKIVIVNLQ 147 (266)
Q Consensus 110 ~~aDLlLvlGTSL~--V~Pa~~L~~~a~~~g~~lViIN~~ 147 (266)
.+|||+|.+|+.+. ......+-.. ..++++|.||+.
T Consensus 107 ~~aDLvI~iG~rf~~~~~~t~~~~~f--ap~akii~Idk~ 144 (174)
T 1ytl_A 107 GNYDLVLMLGSIYYHGSQMLAAIKNF--APHIRALAIDRY 144 (174)
T ss_dssp CCCSEEEEESCCHHHHHHHHHHHHHH--CTTCEEEECSSS
T ss_pred CCCCEEEEECCcCCcccccccccccc--CCCCeEEEeCCC
Confidence 79999999999874 2221222111 246789988754
No 84
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=39.15 E-value=18 Score=25.51 Aligned_cols=27 Identities=26% Similarity=0.703 Sum_probs=18.6
Q ss_pred ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC
Q 024533 48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS 84 (266)
Q Consensus 48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg 84 (266)
....|..||..+.... ....+|+ .||.
T Consensus 27 v~Y~C~~CG~~~e~~~--------~d~irCp--~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSR--------TDAVRCK--DCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCT--------TSTTCCS--SSCC
T ss_pred EEEECCCCCCcceeCC--------CCCccCC--CCCc
Confidence 3468999999864331 1245898 8997
No 85
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=38.67 E-value=1e+02 Score=26.47 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=31.2
Q ss_pred chhHHHHHhh---cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC
Q 024533 101 EMNPAEENCR---MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK 151 (266)
Q Consensus 101 ~~~~a~~~~~---~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~ 151 (266)
..+...+.+. ..|.+|+++...... .+...+...|.|+|.+|......
T Consensus 49 ~~~~i~~~i~~~~~vDgiIi~~~~~~~~---~~~~~~~~~giPvV~~~~~~~~~ 99 (350)
T 3h75_A 49 TLQQARELFQGRDKPDYLMLVNEQYVAP---QILRLSQGSGIKLFIVNSPLTLD 99 (350)
T ss_dssp HHHHHHHHHHSSSCCSEEEEECCSSHHH---HHHHHHTTSCCEEEEEESCCCTT
T ss_pred HHHHHHHHHhcCCCCCEEEEeCchhhHH---HHHHHHHhCCCcEEEEcCCCChH
Confidence 3444555555 799999987433222 23345677899999999876543
No 86
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.64 E-value=20 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 44 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
|-.-....|..|++.|........+...+..-.|+ .||..
T Consensus 9 H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~--~C~k~ 48 (62)
T 1vd4_A 9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCT--FCHTE 48 (62)
T ss_dssp CCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCS--SSCCB
T ss_pred cCCCCCccCCCCCchhccHHHhHhhcCCCCCEECC--CCCCc
Confidence 44445678999999887544333332233345788 89854
No 87
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=37.70 E-value=26 Score=27.67 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=38.5
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEEC
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHA 161 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g 161 (266)
.+.+-|++|++-.|....-.......|+++|+++|.|--. .+ ..+.+|+.|.-
T Consensus 79 ~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~ 132 (180)
T 1jeo_A 79 SYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPL 132 (180)
T ss_dssp CCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEEC
T ss_pred cCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEe
Confidence 3456789999999988777777777888999988877433 33 55666766643
No 88
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=36.78 E-value=17 Score=30.42 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHhhcCCEEEEEccCCChhhcccchHHHhc--CCCEEEEECC-CCCCCCCCccEEEEC
Q 024533 107 ENCRMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNL-QQTPKDKKASLVVHA 161 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~--~g~~lViIN~-~~t~~d~~adl~I~g 161 (266)
..+.+-|++|++-.|....-.......|++ +|+++|.|-- ..++..+.+|+.|.-
T Consensus 102 ~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 102 GILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp GGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 356678999999999888777777778888 9999887743 344444456666543
No 89
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=36.54 E-value=1.5e+02 Score=24.27 Aligned_cols=57 Identities=12% Similarity=-0.057 Sum_probs=35.3
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHc
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L 174 (266)
.+.|-+|+.++.. . .....+.+.|.|+|.+|....... .+ .|.-+-.+....++++|
T Consensus 62 ~~vdgiIi~~~~~--~---~~~~~l~~~~iPvV~i~~~~~~~~--~~-~V~~D~~~~g~~a~~~L 118 (276)
T 3jy6_A 62 RGFDGLILQSFSN--P---QTVQEILHQQMPVVSVDREMDACP--WP-QVVTDNFEAAKAATTAF 118 (276)
T ss_dssp TTCSEEEEESSCC--H---HHHHHHHTTSSCEEEESCCCTTCS--SC-EEECCHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCc--H---HHHHHHHHCCCCEEEEecccCCCC--CC-EEEEChHHHHHHHHHHH
Confidence 5799999999886 2 233345678999999997654322 12 34444444455555544
No 90
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.27 E-value=26 Score=30.27 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=28.0
Q ss_pred ceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCcc
Q 024533 39 KLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 86 (266)
Q Consensus 39 ~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~l 86 (266)
-|+.++|. .|..|+-..+..... .+.....+..|| .||-.|
T Consensus 192 avv~v~~~----~C~GC~~~lppq~~~-~i~~~~~Iv~Cp--~CgRIL 232 (256)
T 3na7_A 192 SIVTIKKQ----ACGGCFIRLNDKIYT-EVLTSGDMITCP--YCGRIL 232 (256)
T ss_dssp SEEECBTT----BCTTTCCBCCHHHHH-HHHHSSSCEECT--TTCCEE
T ss_pred eEEEeeCC----ccCCCCeeeCHHHHH-HHHCCCCEEECC--CCCeeE
Confidence 47888875 799999887755432 222244567899 999654
No 91
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=36.03 E-value=25 Score=27.91 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=41.4
Q ss_pred HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEECcH
Q 024533 106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHAPV 163 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g~~ 163 (266)
...+.+-|++|++-.|....-.......|+++|+++|.|--. ..+..+.+|+.|.-..
T Consensus 82 ~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~ 140 (187)
T 3sho_A 82 LANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAAT 140 (187)
T ss_dssp HHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCC
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecC
Confidence 445677899999999998877777777889999998877543 3344445666665433
No 92
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=34.88 E-value=16 Score=30.87 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=39.5
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CC-----------CCCCCccEEEE
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QT-----------PKDKKASLVVH 160 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t-----------~~d~~adl~I~ 160 (266)
+.+-|++|++-.|....-.-.+...|+++|+++|.|--. .+ +..+.+|+.|.
T Consensus 106 ~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 106 VTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp CCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 567899999999999887778888899999998887443 22 44456777764
No 93
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.50 E-value=43 Score=26.29 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcC--CCcceeecCCCCcccch
Q 024533 4 ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYMR 61 (266)
Q Consensus 4 ~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElH--Gnl~~~~C~~C~~~~~~ 61 (266)
..|+.|..|++.|.+..+-..| | ...+++. ..-....|..||+.++.
T Consensus 54 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 54 TVYRVLNQFDDAGIVTRHHFEG--------G---KSVFELSTQHHHDHLVCLDCGEVIEF 102 (150)
T ss_dssp HHHHHHHHHHHTTSEEEEECGG--------G---CEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHHHCCcEEEEEeCC--------C---ceEEEecCCCceeEEEECCCCCEEEe
Confidence 4688999999999876553221 1 1234431 22346899999987654
No 94
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=34.17 E-value=45 Score=22.27 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.0
Q ss_pred cceeecCCCCcccch
Q 024533 47 SFREICPSCGVEYMR 61 (266)
Q Consensus 47 l~~~~C~~C~~~~~~ 61 (266)
|.+.+|..||..|+-
T Consensus 1 m~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDP 15 (54)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCceECCCCCeEECC
Confidence 346799999999864
No 95
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=34.15 E-value=29 Score=27.54 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=36.2
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEE
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVV 159 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I 159 (266)
.+.+-|++|++-.|....-.......|+++|+++|.|--. .++..+.+|+.|
T Consensus 76 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l 128 (186)
T 1m3s_A 76 PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLII 128 (186)
T ss_dssp CCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEE
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEE
Confidence 3456789999999988777777777888999998877433 333333445544
No 96
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=33.71 E-value=16 Score=29.21 Aligned_cols=29 Identities=17% Similarity=0.555 Sum_probs=21.5
Q ss_pred CCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 44 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
.|.+...+|..||+.+. ...+.|+ .|++.
T Consensus 42 ~g~L~~~rC~~CG~~~f-----------PPr~~Cp--~C~s~ 70 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIFV-----------PARSYCE--HCFVK 70 (145)
T ss_dssp TTCCEEEECTTTCCEEE-----------SCCSEET--TTTEE
T ss_pred CCEEEEEEECCCCcEEe-----------CCCCCCC--CCCCC
Confidence 57888899999998652 1235798 89875
No 97
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=33.22 E-value=29 Score=27.44 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=39.3
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEECc
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAP 162 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g~ 162 (266)
.+.+-|++|++-.|....-.......|+++|+++|.|-- ..++..+.+|+.|.-.
T Consensus 93 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 93 MVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp TCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 356779999999999887777777888999998887733 3334444556665443
No 98
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=31.78 E-value=1.1e+02 Score=26.76 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=49.6
Q ss_pred EEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC--C-CCC------------
Q 024533 90 VLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--K-DKK------------ 154 (266)
Q Consensus 90 Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~--~-d~~------------ 154 (266)
|+.|...++.+. ..+.+..||+++. +|. ..++..-+..|...|.|+|.-|....+ . +..
T Consensus 255 vv~~~g~~~~~~---~~~~~~~adv~v~--pS~-~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~ 328 (413)
T 3oy2_A 255 IMINRTVLTDER---VDMMYNACDVIVN--CSS-GEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISV 328 (413)
T ss_dssp EEEECSCCCHHH---HHHHHHHCSEEEE--CCS-CCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEEC
T ss_pred eeeccCcCCHHH---HHHHHHhCCEEEe--CCC-cCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCccccccccccccc
Confidence 677777777543 4557788998876 443 234433345688899999987765321 1 111
Q ss_pred ----cc--EEEECcHHHHHHHHHHHcc
Q 024533 155 ----AS--LVVHAPVDKVIAGVMRHLN 175 (266)
Q Consensus 155 ----ad--l~I~g~~~evl~~L~~~L~ 175 (266)
.- ++-.++.+++...| +.+.
T Consensus 329 ~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 329 DDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp TTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred ccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 11 55567888887777 6654
No 99
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=30.79 E-value=27 Score=23.10 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=11.9
Q ss_pred cceeecCCCCcccch
Q 024533 47 SFREICPSCGVEYMR 61 (266)
Q Consensus 47 l~~~~C~~C~~~~~~ 61 (266)
|.+.+|..||..|+-
T Consensus 1 m~~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 1 MDIYVCTVCGYEYDP 15 (52)
T ss_dssp CCCEECSSSCCCCCT
T ss_pred CCcEEeCCCCeEEcC
Confidence 346799999999863
No 100
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.38 E-value=57 Score=24.81 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcC--CCcceeecCCCCcccch
Q 024533 4 ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYMR 61 (266)
Q Consensus 4 ~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElH--Gnl~~~~C~~C~~~~~~ 61 (266)
..|+.|..|++.|.+..+-..| | ...++.. +.-....|.+||+.++.
T Consensus 47 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 47 TVYRTLQSMASSGLVDTLHTDT--------G---ESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp HHHHHHHHHHTTTSEEEEECTT--------S---CEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred hHHHHHHHHHHCCCEEEEEeCC--------C---ceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 4688999999998876654333 2 1344431 23457899999987653
No 101
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.32 E-value=34 Score=26.79 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcC--CCcceeecCCCCcccch
Q 024533 4 ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH--GNSFREICPSCGVEYMR 61 (266)
Q Consensus 4 ~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElH--Gnl~~~~C~~C~~~~~~ 61 (266)
-.|+.|..|++.|.+..+-..| | ...+++. +.-....|.+||+.++.
T Consensus 54 TVYR~L~~L~e~Glv~~i~~~~--~---------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 54 TVYRTLELLEELGLVSHAHLGH--G---------APTYHLADRHHHIHLVCRDCTNVIEA 102 (145)
T ss_dssp HHHHHHHHHHHHTSEEEEECGG--G---------CEEEEETTSCCSEEEEESSSSCEEEE
T ss_pred HHHHHHHHHHHCCcEEEEEeCC--C---------ceEEEeCCCCCceEEEECCCCCEEEe
Confidence 4688999999999877665432 1 1123321 22356899999997654
No 102
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=29.67 E-value=21 Score=28.44 Aligned_cols=29 Identities=17% Similarity=0.555 Sum_probs=20.6
Q ss_pred CCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 44 HGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
.|.+.-.+|.+||+.+. ...+.|| .|++.
T Consensus 42 ~grL~~~rC~~CG~~~~-----------PPr~~Cp--~C~s~ 70 (145)
T 3irb_A 42 QNKIIGSKCSKCGRIFV-----------PARSYCE--HCFVK 70 (145)
T ss_dssp TTCCEEEECTTTCCEEE-----------SCCSEET--TTTEE
T ss_pred cCeEEEEEeCCCCcEEc-----------CchhhCc--CCCCC
Confidence 47777889999998652 1234688 89864
No 103
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=29.09 E-value=32 Score=22.96 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.0
Q ss_pred cceeecCCCCcccch
Q 024533 47 SFREICPSCGVEYMR 61 (266)
Q Consensus 47 l~~~~C~~C~~~~~~ 61 (266)
|...+|..||..|+-
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 346799999999864
No 104
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.08 E-value=34 Score=23.66 Aligned_cols=27 Identities=33% Similarity=0.779 Sum_probs=18.4
Q ss_pred eeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 49 REICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 49 ~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
...|..|+.+...+ . ...-+|+ .||..
T Consensus 21 ~Y~C~~Cg~~~~l~-------~-~~~iRC~--~CG~R 47 (63)
T 3h0g_L 21 IYLCADCGARNTIQ-------A-KEVIRCR--ECGHR 47 (63)
T ss_dssp CCBCSSSCCBCCCC-------S-SSCCCCS--SSCCC
T ss_pred EEECCCCCCeeecC-------C-CCceECC--CCCcE
Confidence 46899999877533 1 2345898 89864
No 105
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=28.58 E-value=31 Score=28.09 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=39.0
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC-CCCCCCCccEEEEC
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ-QTPKDKKASLVVHA 161 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~-~t~~d~~adl~I~g 161 (266)
+.+-|++|++-.|....-...+...|+++|+++|.|--. .++..+.+|+.|.-
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEE
Confidence 556799999999998877777778888999998877443 33444556666643
No 106
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.52 E-value=33 Score=24.08 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=13.1
Q ss_pred CcceeecCCCCcccch
Q 024533 46 NSFREICPSCGVEYMR 61 (266)
Q Consensus 46 nl~~~~C~~C~~~~~~ 61 (266)
.+...+|..||..|+-
T Consensus 4 ~m~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 4 DEGKYECEACGYIYEP 19 (70)
T ss_dssp CSSCEEETTTCCEECT
T ss_pred CCceEEeCCCCEEEcC
Confidence 4667899999999863
No 107
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=28.49 E-value=2.1e+02 Score=23.52 Aligned_cols=36 Identities=19% Similarity=0.052 Sum_probs=26.0
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
...|.+|++++.. .......+.+.|.|+|.+|....
T Consensus 63 ~~vdgiIi~~~~~----~~~~~~~~~~~~iPvV~~~~~~~ 98 (291)
T 3egc_A 63 RRVDGLILAPSEG----EHDYLRTELPKTFPIVAVNRELR 98 (291)
T ss_dssp TTCSEEEECCCSS----CCHHHHHSSCTTSCEEEESSCCC
T ss_pred CCCCEEEEeCCCC----ChHHHHHhhccCCCEEEEecccC
Confidence 5789999988875 22233345678999999998765
No 108
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.92 E-value=35 Score=28.65 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=19.5
Q ss_pred cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCc
Q 024533 47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSR 85 (266)
Q Consensus 47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~ 85 (266)
....+|..||..|.. ..+-.|| .||..
T Consensus 169 ~~~~~C~~CG~i~~g----------~~p~~CP--~C~~~ 195 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG----------EDFEKCP--ICFRP 195 (202)
T ss_dssp CCEEECSSSCCEEES----------SCCSBCT--TTCCB
T ss_pred CcEEEECCCCCEEcC----------cCCCCCC--CCCCC
Confidence 457899999998852 1224898 89864
No 109
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.86 E-value=68 Score=24.87 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCC-CcceeecCCCCcccch
Q 024533 4 ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHG-NSFREICPSCGVEYMR 61 (266)
Q Consensus 4 ~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHG-nl~~~~C~~C~~~~~~ 61 (266)
..++.|..|++.|.+..+-..| | ...+++.+ .-....|.+||+.++.
T Consensus 58 TVYR~L~~L~e~Glv~~~~~~~--------~---~~~Y~~~~~~H~HliC~~Cg~v~~~ 105 (145)
T 2fe3_A 58 TVYNNLRVFRESGLVKELTYGD--------A---SSRFDFVTSDHYHAICENCGKIVDF 105 (145)
T ss_dssp HHHHHHHHHHHTTSEEEECCTT--------S---CCEEEECCCCEEEEEETTTCCEEEC
T ss_pred hHHHHHHHHHHCCCEEEEeeCC--------C---ceEEECCCCCcceEEECCCCCEEEe
Confidence 4688999999998876554332 1 12333322 2245899999987654
No 110
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.76 E-value=52 Score=25.48 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcC---CCcceeecCCCCcccch
Q 024533 4 ITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELH---GNSFREICPSCGVEYMR 61 (266)
Q Consensus 4 ~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElH---Gnl~~~~C~~C~~~~~~ 61 (266)
-.|+.|..|++.|.+..+-..| |. ..+++- +.-+...|.+||+.++.
T Consensus 50 TVYR~L~~L~e~Glv~~~~~~~--g~---------~~Y~~~~~~~~H~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 50 TVYRTLQSLADAGEVDVLRTAE--GE---------SVYRRCSTGDHHHHLVCRACGKAVEV 99 (139)
T ss_dssp HHHHHHHHHHHTTSSEEEECTT--SC---------EEEECCSCSSCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCC--Cc---------eEEEECCCCCCccEEEECCCCCEeec
Confidence 4688999999999876655422 21 223321 12345899999997654
No 111
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=27.35 E-value=38 Score=27.32 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=39.7
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCCCCCCccEEEEC
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 161 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~~d~~adl~I~g 161 (266)
.+.+-|++|++-.|....-.......|+++|+++|.|-- ..++..+.+|+.|.-
T Consensus 89 ~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp GCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 456779999999999887777777888999999888844 334444556666643
No 112
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=27.05 E-value=1.8e+02 Score=23.77 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=26.3
Q ss_pred hcCCEEEEEccCCChh-hcccchHHHhcCCCEEEEECCCCC
Q 024533 110 RMADVVLCLGTSLQIT-PACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~-Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
...|-+|++++..... +.......+...|.|+|.+|....
T Consensus 70 ~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 110 (298)
T 3tb6_A 70 QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYA 110 (298)
T ss_dssp TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCT
T ss_pred CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcC
Confidence 5799999988764311 122233345678999999997654
No 113
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.91 E-value=31 Score=25.37 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=12.8
Q ss_pred cceeecCCCCcccch
Q 024533 47 SFREICPSCGVEYMR 61 (266)
Q Consensus 47 l~~~~C~~C~~~~~~ 61 (266)
+...+|..||..|+-
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 668999999999864
No 114
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.62 E-value=83 Score=18.56 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCcceeecCCCCcccchhhHHH-Hh--hccCCCCCCCCCCCC
Q 024533 44 HGNSFREICPSCGVEYMRDFEIE-TI--GMKKTPRRCSDVKCG 83 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~~~-~~--~~~~~~p~Cp~~~Cg 83 (266)
|..-....|..|++.|.....+. .+ ...+..-.|+ .|+
T Consensus 7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~--~C~ 47 (48)
T 2epr_A 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSG--PSS 47 (48)
T ss_dssp CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSC--CCC
T ss_pred CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCC--CCC
Confidence 33445578999999886543322 22 1223345787 786
No 115
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=26.42 E-value=31 Score=28.32 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=34.4
Q ss_pred HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC-CCCC
Q 024533 108 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTP 150 (266)
Q Consensus 108 ~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~-~~t~ 150 (266)
.+...|++|++-.|..-.-.-.+...++++|.++|.|-. ..+.
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~ 117 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTE 117 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCT
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhc
Confidence 677899999999998866566777888999999888865 5443
No 116
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=26.05 E-value=38 Score=34.06 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEccCCCh-hhcc---cchHH-------Hh--------cCCCEEEEECCCCCCCCCCcc
Q 024533 107 ENCRMADVVLCLGTSLQI-TPAC---NLPLK-------SL--------RGGGKIVIVNLQQTPKDKKAS 156 (266)
Q Consensus 107 ~~~~~aDLlLvlGTSL~V-~Pa~---~L~~~-------a~--------~~g~~lViIN~~~t~~d~~ad 156 (266)
..+.+||++|++|+-... .|.. .+... ++ .+|+++|.|++..+.....+|
T Consensus 220 ~D~~~ad~il~~G~Np~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~klivIDPr~t~ta~~Ad 288 (825)
T 1g8k_A 220 EDAQLADVIWSIGNNPYESQTNYFLNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIAR 288 (825)
T ss_dssp HHHHHCSEEEEESCCHHHHSHHHHHHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEEECSSCCHHHHHHH
T ss_pred HHHHhCCEEEEeCCChHHhCcchHhhhHHHhhhhhHHHHhhhhccccccCCCEEEEEeCCCCchhhhhh
Confidence 457899999999996543 2321 11110 11 258999999999887544444
No 117
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.96 E-value=2.4e+02 Score=23.00 Aligned_cols=37 Identities=8% Similarity=-0.068 Sum_probs=26.1
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP 150 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~ 150 (266)
...|.+|++++...- .....+.+.|.|+|.+|.....
T Consensus 68 ~~vdgiIi~~~~~~~----~~~~~l~~~~iPvV~~~~~~~~ 104 (292)
T 3k4h_A 68 RQIGGIILLYSREND----RIIQYLHEQNFPFVLIGKPYDR 104 (292)
T ss_dssp TCCCEEEESCCBTTC----HHHHHHHHTTCCEEEESCCSSC
T ss_pred CCCCEEEEeCCCCCh----HHHHHHHHCCCCEEEECCCCCC
Confidence 578999998876431 2334456789999999987544
No 118
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.89 E-value=37 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.498 Sum_probs=12.7
Q ss_pred cceeecCCCCcccch
Q 024533 47 SFREICPSCGVEYMR 61 (266)
Q Consensus 47 l~~~~C~~C~~~~~~ 61 (266)
+...+|..||..|+-
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 568999999999864
No 119
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=25.51 E-value=2.9e+02 Score=22.95 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=27.2
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP 150 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~ 150 (266)
..+|.+|+.+++... .......+.+.|.|+|.+|.....
T Consensus 57 ~~vdgiIi~~~~~~~--~~~~~~~~~~~~iPvV~~~~~~~~ 95 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQV--LSNVVKEAKQEGIKVLAYDRMIND 95 (313)
T ss_dssp TTCSEEEEECSSTTS--CHHHHHHHHTTTCEEEEESSCCTT
T ss_pred cCCCEEEEeCCChhh--hHHHHHHHHHCCCeEEEECCcCCC
Confidence 579999999886432 112334566789999999987544
No 120
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.01 E-value=90 Score=18.01 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=15.2
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2em7_A 6 SGTGEKPYKCEECGKGFICRR 26 (46)
T ss_dssp SSSCCCSEECSSSCCEESCHH
T ss_pred CCCCCcCccCCCccchhCCHH
Confidence 355555678999999887644
No 121
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=24.89 E-value=88 Score=18.01 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=15.5
Q ss_pred cCCCcceeecCCCCcccchhhH
Q 024533 43 LHGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~~ 64 (266)
.|-.-....|..|++.|.....
T Consensus 6 ~H~~~k~~~C~~C~k~f~~~~~ 27 (46)
T 2el4_A 6 SGTGVKPYGCSQCAKTFSLKSQ 27 (46)
T ss_dssp CSCCCCSEECSSSSCEESSHHH
T ss_pred CCCCCCceECCCCCchhCCHHH
Confidence 3555556789999998876543
No 122
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.64 E-value=95 Score=17.91 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=15.3
Q ss_pred cCCCcceeecCCCCcccchhhH
Q 024533 43 LHGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~~ 64 (266)
.|-.-....|..|++.|.....
T Consensus 6 ~H~~~k~~~C~~C~k~F~~~~~ 27 (46)
T 2ytn_A 6 SGTGKKPYKCNECGKVFTQNSH 27 (46)
T ss_dssp CCSCCSSCBCTTTCCBCSSHHH
T ss_pred CCCCCcCeECCCCCCeeCCHHH
Confidence 3544556789999998876543
No 123
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.38 E-value=95 Score=17.92 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=15.5
Q ss_pred cCCCcceeecCCCCcccchhhH
Q 024533 43 LHGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~~ 64 (266)
.|-.-....|..|++.|.....
T Consensus 6 ~H~~~k~~~C~~C~k~f~~~~~ 27 (46)
T 2epz_A 6 SGTGEKPFDCIDCGKAFSDHIG 27 (46)
T ss_dssp SCCCCCSBCCTTTCCCBSSHHH
T ss_pred CcCCCCCeECCCCCceeCCHHH
Confidence 3555556789999998876543
No 124
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=24.38 E-value=78 Score=25.43 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=31.6
Q ss_pred chhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCC
Q 024533 101 EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 148 (266)
Q Consensus 101 ~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~ 148 (266)
.++.-.+++.+||++|..++....--+..+- .|...|.|++.+....
T Consensus 58 i~~~d~~~i~~aD~vvA~l~~~d~Gt~~EiG-~A~algkPV~~l~~~~ 104 (152)
T 4fyk_A 58 IHEQNLNWLQQADVVVAEVTQPSLGVGYELG-RAVALGKPILCLFRPQ 104 (152)
T ss_dssp HHHHHHHHHHHCSEEEEECSSCCHHHHHHHH-HHHHTTCCEEEEECGG
T ss_pred HHHHHHHHHHHCCEEEEeCCCCCCCHHHHHH-HHHHcCCeEEEEEeCC
Confidence 3455567889999999999844433333443 4667889988865533
No 125
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=24.27 E-value=1.9e+02 Score=24.99 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=47.6
Q ss_pred cEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC--CCCCccEEEE-CcHHH
Q 024533 89 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVH-APVDK 165 (266)
Q Consensus 89 ~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~--~d~~adl~I~-g~~~e 165 (266)
+++.|...++. +...+.+..||+++.- |.. .++..-+..|...|.++|.-|..... ......+.+. ++.++
T Consensus 311 ~~~~~~g~~~~---~~~~~~~~~adv~v~p--s~~-e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~~g~~~~~~d~~~ 384 (439)
T 3fro_A 311 NVKVITEMLSR---EFVRELYGSVDFVIIP--SYF-EPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGE 384 (439)
T ss_dssp TEEEECSCCCH---HHHHHHHTTCSEEEEC--BSC-CSSCHHHHHHHHTTCEEEEESSTHHHHHCCTTTCEEECTTCHHH
T ss_pred CEEEEcCCCCH---HHHHHHHHHCCEEEeC--CCC-CCccHHHHHHHHCCCCeEEcCCCCcceeEEcCceEEeCCCCHHH
Confidence 44444444443 2344567789987653 322 33333344678899999988765322 2222556665 68888
Q ss_pred HHHHHHHHcc
Q 024533 166 VIAGVMRHLN 175 (266)
Q Consensus 166 vl~~L~~~L~ 175 (266)
+...|.+.+.
T Consensus 385 la~~i~~ll~ 394 (439)
T 3fro_A 385 LANAILKALE 394 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8777776665
No 126
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.92 E-value=1e+02 Score=17.80 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=15.1
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2eml_A 6 SGTGEKPYECSVCGKAFSHRQ 26 (46)
T ss_dssp CCSSCCSEECSSSCCEESSHH
T ss_pred CcCCCCCeeCCCcCCccCCHH
Confidence 355555678999999887654
No 127
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=23.91 E-value=3e+02 Score=22.57 Aligned_cols=36 Identities=11% Similarity=-0.176 Sum_probs=25.4
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t 149 (266)
...|-+|++++...- .....+.+.|.|+|.+|....
T Consensus 65 ~~vdgiIi~~~~~~~----~~~~~l~~~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 65 GSADGVIISKIEPND----PRVRFMTERNMPFVTHGRSDM 100 (288)
T ss_dssp TCCSEEEEESCCTTC----HHHHHHHHTTCCEEEESCCCS
T ss_pred CCccEEEEecCCCCc----HHHHHHhhCCCCEEEECCcCC
Confidence 579999998876431 223345678999999997643
No 128
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=23.64 E-value=31 Score=31.11 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=38.4
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCC-CEEEEE-CCCCCCCCCCccEEEE
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGG-GKIVIV-NLQQTPKDKKASLVVH 160 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g-~~lViI-N~~~t~~d~~adl~I~ 160 (266)
+.+-|++|++--|....-.-.....|+++| +++|.| |...++..+.+|+.|.
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~ 150 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALM 150 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEE
Confidence 456789999999998877777777888899 776665 6655665555666654
No 129
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.51 E-value=99 Score=17.88 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=15.2
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-+-....|..|++.|....
T Consensus 6 ~H~~~~~~~C~~C~k~f~~~~ 26 (46)
T 2em5_A 6 SGSSTKSHQCHECGRGFTLKS 26 (46)
T ss_dssp CCCCSCSEECSSSCCEESSHH
T ss_pred CCCCCCCeECCcCCCccCCHH
Confidence 355556678999999887544
No 130
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=23.45 E-value=1e+02 Score=17.70 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=14.9
Q ss_pred CCCcceeecCCCCcccchhhH
Q 024533 44 HGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~ 64 (266)
|-.-....|..|++.|.....
T Consensus 7 H~~~k~~~C~~C~k~f~~~~~ 27 (46)
T 2ema_A 7 GTGEKRYKCNECGKVFSRNSQ 27 (46)
T ss_dssp CTTSCCEECSSSCCEESSHHH
T ss_pred CCCCcCcCCCCCcchhCCHHH
Confidence 444556789999998876543
No 131
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=23.45 E-value=35 Score=30.65 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=38.5
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE-CCCCCCCCCCccEEEE
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVH 160 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI-N~~~t~~d~~adl~I~ 160 (266)
+.+-|++|++--|....-.-.....|+++|+++|.| |...++..+.+|+.|.
T Consensus 89 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~ 141 (344)
T 3fj1_A 89 RLDRALCLAVSQSGKSPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTID 141 (344)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeee
Confidence 345689999998988877777777888899987766 5556665556666654
No 132
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.41 E-value=1e+02 Score=17.79 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=15.2
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~k~~~C~~C~k~F~~~~ 26 (46)
T 2emy_A 6 SGTGENPYECHECGKAFSRKY 26 (46)
T ss_dssp CCCSSCCEECSSSCCEESSHH
T ss_pred CCCCCcCcCCCCCCcccCcHH
Confidence 355556678999999887543
No 133
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.12 E-value=93 Score=17.95 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=15.2
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|..-....|..|++.|....
T Consensus 6 ~H~~~~~~~C~~C~k~f~~~~ 26 (46)
T 2ytg_A 6 SGTGEKPFKCGECGKSYNQRV 26 (46)
T ss_dssp CCSSCCSEECTTTCCEESSSH
T ss_pred CCCCCCCeECCCCCcccCCHH
Confidence 355555688999999887544
No 134
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=22.99 E-value=2.1e+02 Score=22.68 Aligned_cols=72 Identities=15% Similarity=0.050 Sum_probs=42.6
Q ss_pred hhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC--CCC---------CCccEEEECcHHHHHHHH
Q 024533 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT--PKD---------KKASLVVHAPVDKVIAGV 170 (266)
Q Consensus 102 ~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t--~~d---------~~adl~I~g~~~evl~~L 170 (266)
+.+-.+++.+||++|++.+....--+..+- .|...|.+++.+..+.. ... ....+... +.+++...|
T Consensus 68 ~~~d~~~i~~aD~vva~~~~~d~Gt~~EiG-yA~algKPVi~l~~~~~~~~~n~M~~g~~~~~~~~~~~y-~~~el~~~l 145 (165)
T 2khz_A 68 HEQDLNWLQQADVVVAEVTQPSLGVGYELG-RAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDY-AEGEVETML 145 (165)
T ss_dssp HHHHHHHHHHCSEEEEECSSCCHHHHHHHH-HHHHTCSSEEEEECTTTTCCCCHHHHHTCCSSSEEEEEC-CTTTHHHHH
T ss_pred HHHHHHHHHhCCEEEEECCCCCCCHHHHHH-HHHHCCCEEEEEEcCCCCCcchhhhcccCccceeEEEec-CHHHHHHHH
Confidence 344467899999999988743333333332 46778999998855442 110 11223334 667776666
Q ss_pred HHHcc
Q 024533 171 MRHLN 175 (266)
Q Consensus 171 ~~~L~ 175 (266)
.+.+.
T Consensus 146 ~~~~~ 150 (165)
T 2khz_A 146 DRYFE 150 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 135
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=22.99 E-value=68 Score=29.94 Aligned_cols=81 Identities=17% Similarity=0.066 Sum_probs=50.2
Q ss_pred EEEcCCCCChhchhHHHHHhhcCC-EEEEEccCCCh----hhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHH
Q 024533 90 VLDWEDALPPVEMNPAEENCRMAD-VVLCLGTSLQI----TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVD 164 (266)
Q Consensus 90 Vv~FgE~lp~~~~~~a~~~~~~aD-LlLvlGTSL~V----~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~ 164 (266)
.+.|.+.+.++.+....+.++.+. ...-|||+|.. .|..+++ .|++.+|-+|.-.-+..--.+.++-.
T Consensus 310 ~Ii~SdgLde~~i~~l~~~~~~~~~d~fGVGT~L~~~~~~~~~l~~V-------~Klv~~~G~P~~KlSd~~~K~~~~~~ 382 (407)
T 3os4_A 310 VLVFSDNLDLEKALFLYRHFYQRIKLVFGIGTRLTCDIPDVKPLNIV-------IKLVECNDKPVAKLSDSPGKTICQDP 382 (407)
T ss_dssp EEEECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSCCTTCCCCCEE-------EEEEEETTEECCCCCSSTTCCCCCCH
T ss_pred EEEECCCCCHHHHHHHHHHhcCCCCcEEeechheeeCCCCCCCcceE-------EEEEEECCcceeEecCCCccccCCCH
Confidence 477999999877766666555544 57889999865 3555554 26888887665431111122333345
Q ss_pred HHHHHHHHHcccC
Q 024533 165 KVIAGVMRHLNLW 177 (266)
Q Consensus 165 evl~~L~~~L~~~ 177 (266)
+.+..+.+.+|++
T Consensus 383 ~~~~~~~~~~~~~ 395 (407)
T 3os4_A 383 AFVDQLRKAFALP 395 (407)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 6666777777754
No 136
>4aay_A AROA; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=22.91 E-value=27 Score=35.62 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=32.0
Q ss_pred HHHhhcCCEEEEEccCCChh-hcc---c-ch-------HHHh-------cCCCEEEEECCCCCCCCCCc
Q 024533 106 EENCRMADVVLCLGTSLQIT-PAC---N-LP-------LKSL-------RGGGKIVIVNLQQTPKDKKA 155 (266)
Q Consensus 106 ~~~~~~aDLlLvlGTSL~V~-Pa~---~-L~-------~~a~-------~~g~~lViIN~~~t~~d~~a 155 (266)
...+.+||++|++|+-.... |.. . ++ ..++ .+|+++|.|++..|.....+
T Consensus 223 ~~D~~~ad~il~~G~Np~~~~p~~~~~h~~~~~~~~~~~~~k~~~~~~~~~GaklIvIDPr~t~ta~~A 291 (845)
T 4aay_A 223 YEDAELADTIVAVGTNALETQTNYFLNHWIPNLRGESLGKKKELMPEEPHEAGRIIIVDPRRTVTVNAC 291 (845)
T ss_dssp THHHHHCSEEEEESCCHHHHSHHHHHHTHHHHHHTTTHHHHHHHSCSSCCCCCEEEEECSSCCHHHHHH
T ss_pred hhHHhhCCEEEEEeCChhHhCcchHHHHHHHHHHHHHHHHHhhhccccccCCCEEEEEeCCCCHHHHHH
Confidence 35667899999999965532 211 1 11 1111 26999999999998754333
No 137
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.62 E-value=1.1e+02 Score=17.70 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=14.6
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 H~~~k~~~C~~C~k~F~~~~ 26 (46)
T 2emf_A 7 GTGGKHFECTECGKAFTRKS 26 (46)
T ss_dssp SSSSCCEECSSSCCEESCHH
T ss_pred cCCCCCeECCCCCchhCCHH
Confidence 54455678999999887644
No 138
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=22.47 E-value=95 Score=17.97 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=14.4
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|..-....|..|++.|....
T Consensus 7 H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2ely_A 7 GTGEKPFKCVECGKGFSRRS 26 (46)
T ss_dssp CCCCCSBCCSSSCCCBSSTT
T ss_pred CCCCCCcccCccCcccCCHH
Confidence 55555678999999887543
No 139
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.46 E-value=1e+02 Score=17.70 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=14.5
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2ep2_A 7 GTGEKPYECSICGKSFTKKS 26 (46)
T ss_dssp SSCCCSEECSSSCCEESSHH
T ss_pred CCCCcCcCCCCCCcccCCHH
Confidence 44445678999999887654
No 140
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=22.38 E-value=1.2e+02 Score=17.42 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=14.5
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2em9_A 7 GTGEKPYNCKECGKSFRWAS 26 (46)
T ss_dssp CCCCCSEECSSSCCEESSHH
T ss_pred CCCCcCeECCccccccCChH
Confidence 54455678999999887543
No 141
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.38 E-value=1e+02 Score=17.71 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=14.8
Q ss_pred CCCcceeecCCCCcccchhhH
Q 024533 44 HGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~ 64 (266)
|-.-....|..|++.|.....
T Consensus 7 H~~~~~~~C~~C~k~f~~~~~ 27 (46)
T 2en1_A 7 GSGEKPFKCEECGKRFTQNSQ 27 (46)
T ss_dssp CCCCCSEEETTTTEEESSHHH
T ss_pred CCCCCCeeCCCCCcccCCHHH
Confidence 444456789999998876543
No 142
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.30 E-value=93 Score=18.00 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=15.2
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|..-....|..|++.|....
T Consensus 6 ~h~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2em8_A 6 SGSGEKPYKCVECGKGYKRRL 26 (46)
T ss_dssp CCCSCCSEECSSSCCEESSHH
T ss_pred CCCCCCCeECcccCchhCCHH
Confidence 355556678999999887543
No 143
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.26 E-value=2.7e+02 Score=23.17 Aligned_cols=35 Identities=11% Similarity=-0.126 Sum_probs=25.1
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 148 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~ 148 (266)
...|-+|++++...- .....+...|.|+|.+|...
T Consensus 82 ~~vdgiIi~~~~~~~----~~~~~l~~~~iPvV~i~~~~ 116 (305)
T 3huu_A 82 KSVDGFILLYSLKDD----PIEHLLNEFKVPYLIVGKSL 116 (305)
T ss_dssp TCCSEEEESSCBTTC----HHHHHHHHTTCCEEEESCCC
T ss_pred CCCCEEEEeCCcCCc----HHHHHHHHcCCCEEEECCCC
Confidence 568999998876431 23334567899999999875
No 144
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.24 E-value=1e+02 Score=17.72 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=14.9
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|..-....|..|++.|....
T Consensus 6 ~H~~~~~~~C~~C~k~f~~~~ 26 (46)
T 2eov_A 6 SGTGEKPYKCSDCGKSFTWKS 26 (46)
T ss_dssp CCSSCCSCBCSSSCCBCSSHH
T ss_pred CCCCCCCccCCccChhhCCHH
Confidence 355555678999999887543
No 145
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=22.18 E-value=63 Score=30.64 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=47.9
Q ss_pred EEEcCCCCChhchhHHHHHhhcC-CEEEEEccCCCh------------hhcccchHHHhcCCCEEEEECCCCCCCCCCcc
Q 024533 90 VLDWEDALPPVEMNPAEENCRMA-DVVLCLGTSLQI------------TPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS 156 (266)
Q Consensus 90 Vv~FgE~lp~~~~~~a~~~~~~a-DLlLvlGTSL~V------------~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~ad 156 (266)
++.|.+.+.++.+....+.++.+ ....-|||+|.. .|..+++ .|++.+|-+|+-.-+..-
T Consensus 320 ~Iv~SdgLde~~i~~L~~~~~~~~~d~FGVGT~L~~~~~~~~~~~~~~~~~l~~V-------yKLve~~G~P~~KlSd~~ 392 (446)
T 4hl7_A 320 LFIFSDGLDFDQALELCEYFAGRVKISFGIGTFLTNDLANWRNAAGVEYRPLSIV-------IKLAECQGRPVAKISDQP 392 (446)
T ss_dssp EEEECSSCCHHHHHHHHHHHTTTSEEEEEECHHHHSCCTTCBCTTCCBCCCCEEE-------EEEEEETTEECCBCCSSG
T ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCcEEEeccceeccCcccccccccCCCCceeE-------EEEEEECCcceeEecCCc
Confidence 57799999987666655555444 357889998875 3445554 368888876654211111
Q ss_pred EEEECcHHHHHHHHHHHccc
Q 024533 157 LVVHAPVDKVIAGVMRHLNL 176 (266)
Q Consensus 157 l~I~g~~~evl~~L~~~L~~ 176 (266)
-.+.++-.+++..+-+.+|.
T Consensus 393 gK~t~~d~~~~~~~k~~f~~ 412 (446)
T 4hl7_A 393 EKAMCEDPIFLANLKRRFNI 412 (446)
T ss_dssp GGCBCSCHHHHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHHHHcCC
Confidence 11223445566666666664
No 146
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.16 E-value=1.1e+02 Score=17.64 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=15.0
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~~~~~C~~C~k~f~~~~ 26 (46)
T 2ytk_A 6 SGSGEKPYKCNECGKVFTQNS 26 (46)
T ss_dssp CSSSSCSEECSSSCCEESSHH
T ss_pred cCCCCCCEeCCcCCCccCCHH
Confidence 354555678999999887543
No 147
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.14 E-value=1.1e+02 Score=17.60 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=14.6
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2ene_A 7 GTGEKPYKCNECGKVFRHNS 26 (46)
T ss_dssp CCCSSSEECSSSCCEESSHH
T ss_pred CCCCCCeECCCCCchhCChH
Confidence 54455678999999887544
No 148
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.11 E-value=1.1e+02 Score=17.60 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=15.3
Q ss_pred cCCCcceeecCCCCcccchhhH
Q 024533 43 LHGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~~ 64 (266)
.|-.-....|..|++.|.....
T Consensus 6 ~H~~~~~~~C~~C~k~f~~~~~ 27 (46)
T 2eop_A 6 SGTGEKPHECRECGKSFSFNSQ 27 (46)
T ss_dssp SCCCCCSCBCTTTCCBCSSHHH
T ss_pred ccCCCCCeeCCCCCchhCCHHH
Confidence 3545556789999998876543
No 149
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.03 E-value=1.1e+02 Score=17.61 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 h~~~k~~~C~~C~k~F~~~~ 26 (46)
T 2elz_A 7 GSVEKPYKCEDCGKGYNRRL 26 (46)
T ss_dssp CCCCSSCBCSSSCCBCSSHH
T ss_pred CCCCCCeeCcccCchhCCHH
Confidence 44445678999999887543
No 150
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=21.99 E-value=1e+02 Score=17.78 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=14.8
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~k~~~C~~C~k~F~~~~ 26 (46)
T 2emk_A 6 SGTGEKPYECKECGKAFSQTT 26 (46)
T ss_dssp CCSSSCSCBCSSSCCBCSCHH
T ss_pred ccCCCCceECCCCCchhCCHH
Confidence 354455678999999887644
No 151
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.60 E-value=1.1e+02 Score=17.51 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=14.4
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2emm_A 7 GTGERPHKCNECGKSFIQSA 26 (46)
T ss_dssp SSCCCSEECSSSCCEESSHH
T ss_pred cCCCCCeeCCCCChhhCCHH
Confidence 44445678999999887543
No 152
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.46 E-value=1.3e+02 Score=17.27 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=14.8
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2eme_A 6 SGSGEKPYVCDYCGKAFGLSA 26 (46)
T ss_dssp TTCCCCSEECSSSCCEESSHH
T ss_pred CCCCCCCeECCCCChhhCCHH
Confidence 344445678999999887543
No 153
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.43 E-value=1.1e+02 Score=17.48 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=15.3
Q ss_pred cCCCcceeecCCCCcccchhhH
Q 024533 43 LHGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~~ 64 (266)
.|-.-....|..|++.|.....
T Consensus 6 ~H~~~~~~~C~~C~k~f~~~~~ 27 (46)
T 2en8_A 6 SGSGEKSHTCDECGKNFCYISA 27 (46)
T ss_dssp CCCCCSSEECTTTCCEESSHHH
T ss_pred cCCCCCCeECCCcCcccCCHHH
Confidence 3544556789999998876543
No 154
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.32 E-value=69 Score=25.24 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=37.5
Q ss_pred CCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECC
Q 024533 96 ALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL 146 (266)
Q Consensus 96 ~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~ 146 (266)
.++.+.++++.+.+.+++-++++|.+..-..+..+.....+-|.++..++.
T Consensus 23 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~ 73 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTE 73 (187)
T ss_dssp TCCHHHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecC
Confidence 355667888888999999999999987655555554444567788888873
No 155
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.32 E-value=1.2e+02 Score=17.42 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=15.0
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|..-....|..|++.|....
T Consensus 6 ~H~~~~~~~C~~C~k~f~~~~ 26 (46)
T 2yso_A 6 SGSREKSHQCRECGEIFFQYV 26 (46)
T ss_dssp CSSCCCCEECTTTCCEESSHH
T ss_pred ccCCCCCEEccccChhhCCHH
Confidence 355555678999999887543
No 156
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=21.18 E-value=91 Score=28.62 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=41.4
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHH
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMR 172 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~ 172 (266)
+.+|++|++|-=.++.-++++. ...+.|++=||.+.-.+ .+++.. .+..+.+.++++
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~---~~~~~PvlGiN~G~LGF--Lt~~~~-~~~~~~l~~vl~ 163 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLF---QGSVPPVMAFHLGSLGF--LTPFSF-ENFQSQVTQVIE 163 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHC---SSSCCCEEEEESSSCTT--TCCEES-TTHHHHHHHHHH
T ss_pred cCCCEEEEEcChHHHHHHHHHh---ccCCCCEEEEcCCCCcc--ceeecH-HHHHHHHHHHHc
Confidence 5799999999998888777652 35678999999986554 223332 567777777765
No 157
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.12 E-value=79 Score=24.89 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=43.2
Q ss_pred CCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE----ECcHHHHHHHH
Q 024533 96 ALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV----HAPVDKVIAGV 170 (266)
Q Consensus 96 ~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I----~g~~~evl~~L 170 (266)
.++.+.++++.+.+.+++-++++|.+..-..+..+.....+-|.+...++......-...|+.| .|...+++..+
T Consensus 21 ~l~~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~ 99 (186)
T 1m3s_A 21 YISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTA 99 (186)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHHHHHHH
Confidence 4456678888888899999999998765444434433334456666555432222222345544 46666665443
No 158
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=20.87 E-value=81 Score=26.66 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCccccc
Q 024533 74 PRRCSDVKCGSRLKDT 89 (266)
Q Consensus 74 ~p~Cp~~~Cgg~lrP~ 89 (266)
+++|+.+.|.|.|++.
T Consensus 102 g~rC~~p~C~G~m~~e 117 (206)
T 3flo_B 102 GKRCLNDGCTGVMRYK 117 (206)
T ss_dssp TTBCSSTTCCCBEEES
T ss_pred CCCCCCCCCCeeEeee
Confidence 5778766888888754
No 159
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.83 E-value=1.2e+02 Score=17.49 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=14.8
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytd_A 6 SGSGEKPYKCSECGKAFHRHT 26 (46)
T ss_dssp CSCCCCSEECSSSCCEESSHH
T ss_pred ccCCCcCeECCCCCCeeCChH
Confidence 354455678999999887543
No 160
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=20.78 E-value=1.3e+02 Score=17.33 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=14.2
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 h~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2el6_A 7 GAGVNPYKCSQCEKSFSGKL 26 (46)
T ss_dssp SCCCCSEECSSSSCEESSHH
T ss_pred CCCCCCeECCCCCcccCCHH
Confidence 44445578999999887543
No 161
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=20.75 E-value=3.7e+02 Score=22.39 Aligned_cols=62 Identities=8% Similarity=-0.052 Sum_probs=34.8
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHc
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L 174 (266)
...|.+|+.++.-. ........+...|.|+|.+|......+. .+..|..+-.+....+.++|
T Consensus 58 ~~vdgiIi~~~~~~--~~~~~~~~~~~~giPvV~~~~~~~~~~~-~~~~V~~D~~~~g~~a~~~l 119 (330)
T 3uug_A 58 KGVKVLVIASIDGT--TLSDVLKQAGEQGIKVIAYDRLIRNSGD-VSYYATFDNFQVGVLQATSI 119 (330)
T ss_dssp HTCSEEEECCSSGG--GGHHHHHHHHHTTCEEEEESSCCCSCTT-CCEEEEECHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCch--hHHHHHHHHHHCCCCEEEECCCCCCCCc-eeEEEEeCHHHHHHHHHHHH
Confidence 57999998876521 1122334567789999999987654222 22344434444333333333
No 162
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.73 E-value=2.7e+02 Score=22.94 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=24.6
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 147 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~ 147 (266)
...|.+|+.+++.... ......+.+.|.|+|.+|..
T Consensus 56 ~~vdgiii~~~~~~~~--~~~~~~~~~~~iPvV~~~~~ 91 (306)
T 8abp_A 56 SGAKGFVICTPDPKLG--SAIVAKARGYDMKVIAVDDQ 91 (306)
T ss_dssp TTCCEEEEECSCGGGH--HHHHHHHHHTTCEEEEESSC
T ss_pred cCCCEEEEeCCCchhh--HHHHHHHHHCCCcEEEeCCC
Confidence 4689999988764321 12233456789999999954
No 163
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=20.63 E-value=47 Score=29.27 Aligned_cols=66 Identities=14% Similarity=-0.025 Sum_probs=43.1
Q ss_pred HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--------CCccEEEECcHHHHHHHHHH
Q 024533 105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--------KKASLVVHAPVDKVIAGVMR 172 (266)
Q Consensus 105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--------~~adl~I~g~~~evl~~L~~ 172 (266)
+...+..||++++-|||+.---.-.+...++ ++..+|++=+...-.+ ..+... --+.+.++..+..
T Consensus 180 ~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~-V~D~~~~~~~i~~ 253 (270)
T 2h1q_A 180 SEFILPECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFM-VKDNARAFRIVAG 253 (270)
T ss_dssp HHHHGGGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEE-ESCHHHHHHHHTT
T ss_pred HHHHhhcCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEeE-ecCHHHHHHHHHc
Confidence 4557899999999999988777777765553 4558888877743322 122222 3467777765543
No 164
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.54 E-value=86 Score=20.27 Aligned_cols=40 Identities=23% Similarity=0.520 Sum_probs=24.8
Q ss_pred cCCCcceeecCCCCcccchhhHHH-Hh--hccCCCCCCCCCCCCC
Q 024533 43 LHGNSFREICPSCGVEYMRDFEIE-TI--GMKKTPRRCSDVKCGS 84 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~~~~-~~--~~~~~~p~Cp~~~Cgg 84 (266)
.|-.-....|..|++.|.....+. .+ ...+..-.|+ .|+-
T Consensus 8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~--~C~~ 50 (72)
T 1x6e_A 8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGK 50 (72)
T ss_dssp TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECS--SSCC
T ss_pred ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECC--CCCc
Confidence 566667789999999887543322 11 1223345787 7874
No 165
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.43 E-value=1.2e+02 Score=17.44 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=14.8
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2eq4_A 6 SGTGEKLYNCKECGKSFSRAP 26 (46)
T ss_dssp CSSCCCCCCBTTTTBCCSCHH
T ss_pred cCCCCCCeECCCCCCccCchH
Confidence 354455678999999887543
No 166
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=1.2e+02 Score=17.41 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=14.5
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 H~~~~~~~C~~C~k~f~~~~ 26 (46)
T 2en6_A 7 GSGEKPYGCNECGKTFSQKS 26 (46)
T ss_dssp CCSSCCEEETTTTEEESSHH
T ss_pred cCCCcCeECCCCCcccCchH
Confidence 44455678999999887543
No 167
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.22 E-value=1.3e+02 Score=17.24 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=15.3
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~h~~~~~~~C~~C~k~f~~~~ 26 (46)
T 2ep0_A 6 SGTGEKPYKCDVCHKSFRYGS 26 (46)
T ss_dssp SSTTCCSEECSSSCCEESSHH
T ss_pred CCCCCCCeeCcccCcccCChH
Confidence 355556678999999887654
No 168
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.18 E-value=1.3e+02 Score=17.30 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=14.9
Q ss_pred CCCcceeecCCCCcccchhhH
Q 024533 44 HGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~ 64 (266)
|-.-....|..|++.|.....
T Consensus 7 H~~~k~~~C~~C~k~F~~~~~ 27 (46)
T 2eq0_A 7 GTGEKPYKCHECGKVFRRNSH 27 (46)
T ss_dssp TTCCCCEECTTTCCEESSHHH
T ss_pred CCCCCCeECCCCCchhCCHHH
Confidence 444556789999998876543
No 169
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.17 E-value=1e+02 Score=17.72 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=15.1
Q ss_pred cCCCcceeecCCCCcccchhh
Q 024533 43 LHGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 43 lHGnl~~~~C~~C~~~~~~~~ 63 (266)
.|-.-....|..|++.|....
T Consensus 6 ~H~~~k~~~C~~C~k~f~~~~ 26 (46)
T 2emp_A 6 SGTGVKPYMCNECGKAFSVYS 26 (46)
T ss_dssp CSSCCCSEECSSSCCEESCHH
T ss_pred ccCCCcCeECCCCCchhCCHH
Confidence 355555678999999887543
No 170
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.15 E-value=1.2e+02 Score=17.41 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=14.8
Q ss_pred CCCcceeecCCCCcccchhhH
Q 024533 44 HGNSFREICPSCGVEYMRDFE 64 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~~ 64 (266)
|-.-....|..|++.|.....
T Consensus 7 H~~~~~~~C~~C~k~F~~~~~ 27 (46)
T 2eoe_A 7 GTGEKPYKCNECGKVFTQNSH 27 (46)
T ss_dssp CCCCCSSEETTTTEECSSHHH
T ss_pred CCCCCCeECCCcChhhCCHHH
Confidence 444556789999998876543
No 171
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=20.03 E-value=2.7e+02 Score=22.49 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=22.4
Q ss_pred hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCC
Q 024533 110 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 148 (266)
Q Consensus 110 ~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~ 148 (266)
...|.+|+.+++..- + ....+...|.|+|.+|...
T Consensus 54 ~~vdgiI~~~~~~~~-~---~~~~~~~~~iPvV~~~~~~ 88 (276)
T 2h0a_A 54 YLTDGLILASYDLTE-R---FEEGRLPTERPVVLVDAQN 88 (276)
T ss_dssp CCCSEEEEESCCCC----------CCSCSSCEEEESSCC
T ss_pred CCCCEEEEecCCCCH-H---HHHHHhhcCCCEEEEeccC
Confidence 468999998876541 2 2223456789999998764
No 172
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=20.02 E-value=92 Score=27.75 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=37.8
Q ss_pred hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEE-CCCCCCCCCCccEEEE
Q 024533 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVH 160 (266)
Q Consensus 109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViI-N~~~t~~d~~adl~I~ 160 (266)
+.+-|++|++--|....-.-.....|+++|+++|.| |...++..+.+|+.|.
T Consensus 88 ~~~~dl~i~iS~SG~T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~ 140 (334)
T 3hba_A 88 KLAGGLVIVISQSGRSPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIP 140 (334)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeee
Confidence 345689999999988877777777788889886655 5556666666776664
No 173
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.01 E-value=1.1e+02 Score=17.63 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=14.6
Q ss_pred CCCcceeecCCCCcccchhh
Q 024533 44 HGNSFREICPSCGVEYMRDF 63 (266)
Q Consensus 44 HGnl~~~~C~~C~~~~~~~~ 63 (266)
|-.-....|..|++.|....
T Consensus 7 H~~~k~~~C~~C~k~F~~~~ 26 (46)
T 2emh_A 7 GTGERPYICTVCGKAFTDRS 26 (46)
T ss_dssp CSCCCSEECTTTCCEESSHH
T ss_pred CCCCCCcCCCCCCchhCCHH
Confidence 54455678999999887543
Done!