BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024534
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SJ6|A Chain A, Nmr Structure And Regulated Expression In Apl Cell Of
Human Sh3bgrl3
Length = 101
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 118 VYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLP 177
VY TS+ R V IL G R+Q D+S D++ +E++ + G K T P
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRAL---AGNPKATPP 62
Query: 178 RVFIGGRYIGGVEEVRQLNETGELKKFVE 206
++ G +Y G E + E L++F++
Sbjct: 63 QIVNGDQYCGDYELFVEAVEQNTLQEFLK 91
>pdb|1J0F|A Chain A, Solution Structure Of The Sh3 Domain Binding Glutamic
Acid- Rich Protein Like 3
Length = 100
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 118 VYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLP 177
VY TS+ R V IL G R+Q D+S D++ +E++ + G K T P
Sbjct: 13 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTL---AGNPKATPP 69
Query: 178 RVFIGGRYIGGVEEVRQLNETGELKKFVE 206
++ G Y G E + E L++F++
Sbjct: 70 QIVNGNHYCGDYELFVEAVEQDTLQEFLK 98
>pdb|1T1V|A Chain A, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
pdb|1T1V|B Chain B, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
Length = 93
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 118 VYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLP 177
VY TS+ R V IL G R+Q D+S D++ +E++ + G K T P
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTL---AGNPKATPP 62
Query: 178 RVFIGGRYIGGVEEVRQLNETGELKKFVE 206
++ G Y G E + E L++F++
Sbjct: 63 QIVNGNHYCGDYELFVEAVEQDTLQEFLK 91
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 133 CKAVRSIL---------RGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGG 183
CKA S L + ++LDE +S S + L+ I G + T+P V+I G
Sbjct: 30 CKATLSTLFQELNVPKSKALVLELDE--MSNGSEIQDALEEISG-----QKTVPNVYING 82
Query: 184 RYIGGVEEVRQLNETGELKKFVE 206
++IGG ++ L + G+L + ++
Sbjct: 83 KHIGGNSDLETLKKNGKLAEILK 105
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 145 VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKF 204
V+LDE LS S + L G G T+P VFIGG+ IGG + V + ++ EL
Sbjct: 50 VELDE--LSDGSQLQSALAHWTGRG-----TVPNVFIGGKQIGGCDTVVEKHQRNELLPL 102
Query: 205 VEGLPAAER 213
++ A +
Sbjct: 103 LQDAAATAK 111
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 145 VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKF 204
V+LDE LS S + L G G T+P VFIGG+ IGG + V + ++ EL
Sbjct: 51 VELDE--LSDGSQLQSALAHWTGRG-----TVPNVFIGGKQIGGCDTVVEKHQRNELLPL 103
Query: 205 VEGLPAAER 213
++ A +
Sbjct: 104 LQDAAATAK 112
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 133 CKAVRSIL---------RGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGG 183
CKA S L + ++LDE +S S + L+ I G + T+P V+I G
Sbjct: 50 CKATLSTLFQELNVPKSKALVLELDE--MSNGSEIQDALEEISG-----QKTVPNVYING 102
Query: 184 RYIGGVEEVRQLNETGELKKFVE 206
++IGG ++ L + G+L + ++
Sbjct: 103 KHIGGNSDLETLKKNGKLAEILK 125
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 110 PGADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGG 169
PG+ + +++Y R CK R +L V+ + D S +S E+ G
Sbjct: 2 PGSMKEIILY------TRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANG- 52
Query: 170 GQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
+ T P++FIG ++GG +++ L G+L ++
Sbjct: 53 ---RNTFPQIFIGDYHVGGCDDLYALENKGKLDSLLQ 86
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 110 PGADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGG 169
PG+ V++Y R C +++L + +E D S E+Q G
Sbjct: 2 PGSMVDVIIY------TRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSG-- 53
Query: 170 GQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
+ T P++FIG ++GG +++ L + G+L ++
Sbjct: 54 ---RNTFPQIFIGSVHVGGCDDLYALEDEGKLDSLLK 87
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFV 205
T+P VFIGG++IGG + +L GEL+ +
Sbjct: 72 TVPNVFIGGKHIGGCTDTVKLYRKGELEPLL 102
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
T+PR+F+ G +IGG + +L++ G+L V
Sbjct: 102 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
T+PR+F+ G +IGG + +L++ G+L V
Sbjct: 80 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILR--GFRVQLDERDLSMDSSFLN-ELQGI 165
A Q V+V + E C+ +RS L GFRV LD+RD+ + E++G+
Sbjct: 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGV 370
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 11/90 (12%)
Query: 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQ---LDERDLSMDSSFLNELQGILGGGGQ 171
+VVV+ ++ T C+ + IL ++ L+ D++ ++ NE+Q L
Sbjct: 14 KVVVF------IKPTCPYCRRAQEILSQLPIKQGLLEFVDITA-TNHTNEIQDYLQQLTG 66
Query: 172 SKLTLPRVFIGGRYIGGVEEVRQLNETGEL 201
++ T+PRVFIG IGG ++ L ++GEL
Sbjct: 67 AR-TVPRVFIGKDCIGGCSDLVSLQQSGEL 95
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 126 VRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRY 185
+ + F++ +S + ++LDE +S S + L+ I G + T+P V+I G++
Sbjct: 37 LSTLFQELNVPKS--KALVLELDE--MSNGSEIQDALEEISG-----QKTVPNVYINGKH 87
Query: 186 IGGVEEVRQLNETGELKKFVE 206
IGG ++ L + G+L + ++
Sbjct: 88 IGGNSDLETLKKNGKLAEILK 108
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
T+PR+F+ G +IGG + +L++ G+L V
Sbjct: 88 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 119
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 133 CKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEV 192
C + +L + +E L D++ ++ ++ + G + T+P+VFIGG++IGG +++
Sbjct: 183 CAKAKQLLHDKGLSFEEIILGHDATIVS-VRAVSG-----RTTVPQVFIGGKHIGGSDDL 236
Query: 193 RQ 194
+
Sbjct: 237 EK 238
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGEL 201
T+PRVFIG IGG ++ L ++GEL
Sbjct: 68 TVPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVEG 207
T P++++ G +GG++ V++L E GEL + G
Sbjct: 72 TYPQLYVKGELVGGLDIVKELKENGELLPILRG 104
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 156 SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGEL 201
+S NE+Q L ++ T+PRVFIG IGG ++ +++ GEL
Sbjct: 50 TSDTNEIQDYLQQLTGAR-TVPRVFIGKECIGGCTDLESMHKRGEL 94
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
T P+++IGG + GG + + +TGEL++ VE
Sbjct: 73 TFPQLYIGGEFFGGCDITLEAFKTGELQEEVE 104
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELK 202
T+P VF+ G++IGG + +LN G+L+
Sbjct: 73 TVPNVFVCGKHIGGCTDTVKLNRKGDLE 100
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 173 KLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
K +LP++FI ++IGG +++ L+ G+L +
Sbjct: 65 KRSLPQIFIDDQHIGGCDDIYALDGAGKLDPLLH 98
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGEL 201
T+P+V++ G ++GG + + Q+++ G+L
Sbjct: 76 TIPQVYLNGEFVGGCDILLQMHQNGDL 102
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 193 RQLNETGELKKFVEGLPAAERGVCNICGGYSFVL-CGECDGSHKVYAEKGGGFKSCNACN 251
R+ N T E G ++ VC Y +L CG DG+ + G G N
Sbjct: 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN 146
Query: 252 ENGLIRCPSCSYAP 265
I C + S+AP
Sbjct: 147 NAHTIGCNAVSWAP 160
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVEG 207
T P++++ G +GG++ V++L + GEL ++G
Sbjct: 70 TYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102
>pdb|3ZY2|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp (High
Resolution Dataset)
pdb|3ZY3|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp
(Crystal-Form-Iii)
pdb|3ZY3|B Chain B, Crystal Structure Of Pofut1 In Complex With Gdp
(Crystal-Form-Iii)
pdb|3ZY4|A Chain A, Crystal Structure Of Pofut1 Apo-Form (Crystal-Form-I)
pdb|3ZY5|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
(Crystal-Form-I)
pdb|3ZY6|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
(Crystal-Form-Ii)
Length = 362
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 180 FIGGRYIGGVEEVRQLNETGELKKFVEGLPAAERGV 215
F+G Y G + LN+ G KK++E P+ E V
Sbjct: 133 FVGDEYFGDIPGGFDLNQMGSRKKWLEKFPSEEYPV 168
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 134 KAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193
K + IL +Q D+ D L+ S T P++++ G IGG++ ++
Sbjct: 35 KQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY-----SSWPTYPQLYVSGELIGGLDIIK 89
Query: 194 QLNETGEL 201
+L + EL
Sbjct: 90 ELEASEEL 97
>pdb|4GHC|A Chain A, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.55 Ang Resolution
pdb|4GHC|B Chain B, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.55 Ang Resolution
pdb|4GHC|C Chain C, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.55 Ang Resolution
pdb|4GHC|D Chain D, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.55 Ang Resolution
pdb|4GHD|A Chain A, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With Hpca At
1.85 Ang Resolution
pdb|4GHD|B Chain B, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With Hpca At
1.85 Ang Resolution
pdb|4GHD|C Chain C, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With Hpca At
1.85 Ang Resolution
pdb|4GHD|D Chain D, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With Hpca At
1.85 Ang Resolution
pdb|4GHE|A Chain A, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol At 1.60 Ang Resolution
pdb|4GHE|B Chain B, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol At 1.60 Ang Resolution
pdb|4GHE|C Chain C, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol At 1.60 Ang Resolution
pdb|4GHE|D Chain D, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol At 1.60 Ang Resolution
pdb|4GHF|A Chain A, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol And Dioxygen At 1.67 Ang Resolution
pdb|4GHF|B Chain B, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol And Dioxygen At 1.67 Ang Resolution
pdb|4GHF|C Chain C, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol And Dioxygen At 1.67 Ang Resolution
pdb|4GHF|D Chain D, Structure Of Y257f Variant Of Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum In Complex With
4-Nitrocatechol And Dioxygen At 1.67 Ang Resolution
Length = 365
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 189 VEEVRQLNETGELKKFVEGLPAAERGVCNICGGYSFVLCGECDGSHKVYAEKGGGFKSCN 248
E + L+ G +++ +E +E V G+SF G+ DGS+ A K GFK N
Sbjct: 306 TEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQASK--GFKLGN 363
>pdb|1Q0C|A Chain A, Anerobic Substrate Complex Of Homoprotocatechuate 2,3-
Dioxygenase From Brevibacterium Fuscum. (Complex With
3,4- Dihydroxyphenylacetate)
pdb|1Q0C|B Chain B, Anerobic Substrate Complex Of Homoprotocatechuate 2,3-
Dioxygenase From Brevibacterium Fuscum. (Complex With
3,4- Dihydroxyphenylacetate)
pdb|1Q0C|C Chain C, Anerobic Substrate Complex Of Homoprotocatechuate 2,3-
Dioxygenase From Brevibacterium Fuscum. (Complex With
3,4- Dihydroxyphenylacetate)
pdb|1Q0C|D Chain D, Anerobic Substrate Complex Of Homoprotocatechuate 2,3-
Dioxygenase From Brevibacterium Fuscum. (Complex With
3,4- Dihydroxyphenylacetate)
pdb|1Q0O|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum (Full Length Protein)
pdb|1Q0O|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Brevibacterium Fuscum (Full Length Protein)
pdb|2IG9|A Chain A, Structure Of A Full-Length Homoprotocatechuate
2,3-Dioxygenase From B. Fuscum In A New Spacegroup.
pdb|2IG9|B Chain B, Structure Of A Full-Length Homoprotocatechuate
2,3-Dioxygenase From B. Fuscum In A New Spacegroup.
pdb|2IG9|C Chain C, Structure Of A Full-Length Homoprotocatechuate
2,3-Dioxygenase From B. Fuscum In A New Spacegroup.
pdb|2IG9|D Chain D, Structure Of A Full-Length Homoprotocatechuate
2,3-Dioxygenase From B. Fuscum In A New Spacegroup.
pdb|2IGA|A Chain A, Structure Of Homoprotocatechuate 2,3-Dioxygenase From B.
Fuscum In Complex With Reactive Intermediates Formed Via
In Crystallo Reaction With 4-Nitrocatechol At Low Oxygen
Concentrations.
pdb|2IGA|B Chain B, Structure Of Homoprotocatechuate 2,3-Dioxygenase From B.
Fuscum In Complex With Reactive Intermediates Formed Via
In Crystallo Reaction With 4-Nitrocatechol At Low Oxygen
Concentrations.
pdb|2IGA|C Chain C, Structure Of Homoprotocatechuate 2,3-Dioxygenase From B.
Fuscum In Complex With Reactive Intermediates Formed Via
In Crystallo Reaction With 4-Nitrocatechol At Low Oxygen
Concentrations.
pdb|2IGA|D Chain D, Structure Of Homoprotocatechuate 2,3-Dioxygenase From B.
Fuscum In Complex With Reactive Intermediates Formed Via
In Crystallo Reaction With 4-Nitrocatechol At Low Oxygen
Concentrations.
pdb|3BZA|A Chain A, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.7 Ang Resolution
pdb|3BZA|B Chain B, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.7 Ang Resolution
pdb|3BZA|C Chain C, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.7 Ang Resolution
pdb|3BZA|D Chain D, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.7 Ang Resolution
pdb|3OJJ|A Chain A, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.72 Ang Resolution
pdb|3OJJ|B Chain B, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.72 Ang Resolution
pdb|3OJJ|C Chain C, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.72 Ang Resolution
pdb|3OJJ|D Chain D, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase From B.Fuscum At 1.72 Ang Resolution
pdb|3OJK|A Chain A, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase In Complex With 4-Nitrocatechol At 1.68
Ang Resolution
pdb|3OJK|B Chain B, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase In Complex With 4-Nitrocatechol At 1.68
Ang Resolution
pdb|3OJK|C Chain C, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase In Complex With 4-Nitrocatechol At 1.68
Ang Resolution
pdb|3OJK|D Chain D, Structure Of Co-Substituted Homoprotocatechuate
2,3-Dioxygenase In Complex With 4-Nitrocatechol At 1.68
Ang Resolution
pdb|3OJN|A Chain A, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase At 1.65 Ang Resolution
pdb|3OJN|B Chain B, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase At 1.65 Ang Resolution
pdb|3OJN|C Chain C, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase At 1.65 Ang Resolution
pdb|3OJN|D Chain D, Structure Of Mn-Substituted Homoprotocatechuate
2,3-Dioxygenase At 1.65 Ang Resolution
pdb|3OJT|A Chain A, Structure Of Native Fe-Containing Homoprotocatechuate
2,3-Dioxygenase At 1.70 Ang Resolution
pdb|3OJT|B Chain B, Structure Of Native Fe-Containing Homoprotocatechuate
2,3-Dioxygenase At 1.70 Ang Resolution
pdb|3OJT|C Chain C, Structure Of Native Fe-Containing Homoprotocatechuate
2,3-Dioxygenase At 1.70 Ang Resolution
pdb|3OJT|D Chain D, Structure Of Native Fe-Containing Homoprotocatechuate
2,3-Dioxygenase At 1.70 Ang Resolution
pdb|4GHG|A Chain A, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With Hpca At 1.50 Ang Resolution
pdb|4GHG|B Chain B, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With Hpca At 1.50 Ang Resolution
pdb|4GHG|C Chain C, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With Hpca At 1.50 Ang Resolution
pdb|4GHG|D Chain D, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With Hpca At 1.50 Ang Resolution
pdb|4GHH|A Chain A, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With 4-Nitrocatechol At 1.55 Ang
Resolution
pdb|4GHH|B Chain B, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With 4-Nitrocatechol At 1.55 Ang
Resolution
pdb|4GHH|C Chain C, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With 4-Nitrocatechol At 1.55 Ang
Resolution
pdb|4GHH|D Chain D, Structure Of Homoprotocatechuate 2,3-Dioxygenase From
B.Fuscum In Complex With 4-Nitrocatechol At 1.55 Ang
Resolution
Length = 365
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 189 VEEVRQLNETGELKKFVEGLPAAERGVCNICGGYSFVLCGECDGSHKVYAEKGGGFKSCN 248
E + L+ G +++ +E +E V G+SF G+ DGS+ A K GFK N
Sbjct: 306 TEASKVLDLDGNVQEIIERTDDSELEVTIGADGFSFTRAGDEDGSYHGQASK--GFKLGN 363
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
T P++++ G +GG + V ++ + GEL++ ++
Sbjct: 70 TFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 101
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
T P++++ G +GG + V ++ + GEL++ ++
Sbjct: 90 TFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
T P+++I G + GG + + ++GEL++ VE
Sbjct: 73 TFPQLYIDGEFFGGCDITVEAYKSGELQEQVE 104
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVE 206
T+P++++ +IGG + + + +GEL +E
Sbjct: 74 TIPQLYVNKEFIGGCDVITSMARSGELADLLE 105
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQ------LDERDLSMDSSFLNELQGI 165
A+ +V ++ V+ T C+ IL F + +D ++ ++ + + I
Sbjct: 17 ANNKVTIF------VKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQI 70
Query: 166 LGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGEL 201
GG T+PR+F G IGG ++ +++ L
Sbjct: 71 TGGK-----TVPRIFFGKTSIGGYSDLLEIDNMDAL 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,249,393
Number of Sequences: 62578
Number of extensions: 288195
Number of successful extensions: 566
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 42
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)