Query 024534
Match_columns 266
No_of_seqs 255 out of 1292
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 2.4E-54 5.3E-59 393.6 18.8 157 106-263 123-281 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 1.8E-51 3.8E-56 348.0 17.0 143 115-258 1-147 (147)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 2.3E-24 5E-29 169.4 9.9 90 116-206 2-91 (92)
4 TIGR02189 GlrX-like_plant Glut 99.9 2.6E-22 5.6E-27 158.8 11.1 88 112-210 6-96 (99)
5 PRK10824 glutaredoxin-4; Provi 99.9 2.1E-22 4.6E-27 164.4 10.8 93 112-210 13-105 (115)
6 TIGR00365 monothiol glutaredox 99.9 3.7E-22 8.1E-27 157.3 11.7 88 112-205 10-97 (97)
7 PHA03050 glutaredoxin; Provisi 99.9 1.1E-21 2.3E-26 158.1 11.5 89 112-211 11-105 (108)
8 cd03028 GRX_PICOT_like Glutare 99.9 5E-21 1.1E-25 148.3 10.7 85 112-202 6-90 (90)
9 TIGR02181 GRX_bact Glutaredoxi 99.8 1.6E-20 3.6E-25 140.2 9.9 79 116-205 1-79 (79)
10 PRK10638 glutaredoxin 3; Provi 99.8 6E-20 1.3E-24 139.4 11.2 82 114-206 2-83 (83)
11 cd03418 GRX_GRXb_1_3_like Glut 99.8 9.1E-19 2E-23 128.7 10.5 75 115-199 1-75 (75)
12 cd03027 GRX_DEP Glutaredoxin ( 99.8 8E-19 1.7E-23 129.8 9.8 73 114-197 1-73 (73)
13 KOG1752 Glutaredoxin and relat 99.8 9E-19 1.9E-23 140.8 10.6 88 112-210 12-102 (104)
14 PTZ00062 glutaredoxin; Provisi 99.8 9.5E-19 2.1E-23 155.5 11.7 91 111-207 110-200 (204)
15 TIGR02180 GRX_euk Glutaredoxin 99.7 1.2E-17 2.5E-22 124.4 9.5 79 116-205 1-84 (84)
16 cd03419 GRX_GRXh_1_2_like Glut 99.7 3.1E-17 6.7E-22 122.0 9.1 79 115-204 1-82 (82)
17 COG0695 GrxC Glutaredoxin and 99.7 4.3E-17 9.3E-22 124.5 8.8 76 115-201 2-79 (80)
18 cd03029 GRX_hybridPRX5 Glutare 99.7 1.1E-16 2.3E-21 118.0 9.7 70 115-196 2-71 (72)
19 COG0278 Glutaredoxin-related p 99.7 9.5E-17 2.1E-21 128.0 9.5 92 111-208 12-104 (105)
20 TIGR02190 GlrX-dom Glutaredoxi 99.7 2E-16 4.4E-21 119.3 10.4 73 111-195 5-77 (79)
21 cd02066 GRX_family Glutaredoxi 99.7 2.5E-16 5.4E-21 112.0 10.2 72 115-197 1-72 (72)
22 TIGR02183 GRXA Glutaredoxin, G 99.7 3.4E-16 7.3E-21 120.3 10.0 75 116-199 2-81 (86)
23 PRK11200 grxA glutaredoxin 1; 99.7 5.5E-16 1.2E-20 117.9 10.4 75 115-198 2-81 (85)
24 PF04908 SH3BGR: SH3-binding, 99.7 3.4E-16 7.5E-21 124.9 8.6 92 115-206 2-97 (99)
25 PF00462 Glutaredoxin: Glutare 99.6 6.3E-15 1.4E-19 105.0 8.4 60 116-186 1-60 (60)
26 PRK12759 bifunctional gluaredo 99.5 2.4E-14 5.3E-19 138.6 10.8 89 114-211 2-94 (410)
27 KOG0911 Glutaredoxin-related p 99.5 2.9E-14 6.4E-19 127.9 9.8 92 110-207 135-226 (227)
28 TIGR02194 GlrX_NrdH Glutaredox 99.4 4.7E-13 1E-17 98.9 7.7 63 116-190 1-64 (72)
29 PRK10329 glutaredoxin-like pro 99.4 1.8E-12 3.9E-17 99.1 8.8 64 115-190 2-65 (81)
30 TIGR02196 GlrX_YruB Glutaredox 99.2 1.8E-10 4E-15 82.2 9.5 66 115-191 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.1 4E-10 8.8E-15 80.4 9.0 66 115-191 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 99.0 5.4E-09 1.2E-13 76.1 9.1 65 115-190 1-67 (77)
33 cd02973 TRX_GRX_like Thioredox 98.8 1.7E-08 3.6E-13 72.6 6.2 58 115-187 2-64 (67)
34 KOG4023 Uncharacterized conser 98.6 1.2E-07 2.6E-12 75.9 6.7 97 115-211 3-102 (108)
35 cd03041 GST_N_2GST_N GST_N fam 98.5 6.5E-07 1.4E-11 66.7 9.1 70 116-196 2-73 (77)
36 cd03040 GST_N_mPGES2 GST_N fam 98.5 1.8E-06 3.8E-11 63.6 9.4 68 115-196 1-72 (77)
37 cd00570 GST_N_family Glutathio 98.4 7E-07 1.5E-11 61.8 6.3 68 117-195 2-69 (71)
38 cd03037 GST_N_GRX2 GST_N famil 98.4 1.9E-06 4.1E-11 62.7 8.1 68 117-197 2-70 (71)
39 cd03055 GST_N_Omega GST_N fami 98.3 5.5E-06 1.2E-10 63.5 8.7 73 111-195 14-87 (89)
40 cd03036 ArsC_like Arsenate Red 98.2 2.7E-06 5.9E-11 68.4 5.0 47 116-168 1-47 (111)
41 cd03059 GST_N_SspA GST_N famil 98.2 1.1E-05 2.5E-10 58.2 7.7 68 116-195 1-68 (73)
42 cd02977 ArsC_family Arsenate R 98.1 4.1E-06 8.9E-11 66.1 4.7 47 116-168 1-47 (105)
43 TIGR00411 redox_disulf_1 small 98.0 2.7E-05 5.8E-10 57.3 7.9 55 115-184 2-62 (82)
44 PF13417 GST_N_3: Glutathione 98.0 2.9E-05 6.2E-10 57.4 7.1 68 118-197 1-68 (75)
45 cd03060 GST_N_Omega_like GST_N 98.0 3.3E-05 7.3E-10 56.2 7.3 65 117-193 2-67 (71)
46 cd03051 GST_N_GTT2_like GST_N 98.0 2.3E-05 5E-10 56.2 6.2 67 117-194 2-71 (74)
47 PF05768 DUF836: Glutaredoxin- 98.0 8.3E-05 1.8E-09 56.4 9.4 53 115-183 1-57 (81)
48 PRK01655 spxA transcriptional 98.0 1.9E-05 4E-10 65.6 6.3 47 116-168 2-48 (131)
49 cd03045 GST_N_Delta_Epsilon GS 97.9 6.4E-05 1.4E-09 54.5 6.9 68 116-194 1-70 (74)
50 TIGR01617 arsC_related transcr 97.8 4.1E-05 8.8E-10 61.9 6.2 47 116-168 1-47 (117)
51 cd03032 ArsC_Spx Arsenate Redu 97.8 5.6E-05 1.2E-09 61.0 6.3 47 116-168 2-48 (115)
52 cd03056 GST_N_4 GST_N family, 97.8 0.00013 2.7E-09 52.4 7.0 67 117-194 2-70 (73)
53 PRK13344 spxA transcriptional 97.7 7.2E-05 1.6E-09 62.3 5.7 47 116-168 2-48 (132)
54 PRK12559 transcriptional regul 97.7 7.6E-05 1.7E-09 62.1 5.6 47 116-168 2-48 (131)
55 cd03035 ArsC_Yffb Arsenate Red 97.7 7.6E-05 1.6E-09 59.8 5.0 47 116-168 1-47 (105)
56 cd03026 AhpF_NTD_C TRX-GRX-lik 97.6 0.00014 3E-09 56.5 5.9 59 114-187 14-77 (89)
57 PHA02125 thioredoxin-like prot 97.6 0.00033 7.3E-09 52.0 7.2 55 116-186 2-56 (75)
58 cd03033 ArsC_15kD Arsenate Red 97.6 0.00014 3E-09 59.1 5.3 48 115-168 1-48 (113)
59 cd03054 GST_N_Metaxin GST_N fa 97.5 0.0005 1.1E-08 50.0 7.3 60 125-197 11-70 (72)
60 cd03053 GST_N_Phi GST_N family 97.4 0.0013 2.7E-08 48.0 7.8 70 116-196 2-73 (76)
61 cd03061 GST_N_CLIC GST_N famil 97.3 0.0025 5.5E-08 50.2 9.7 76 115-196 5-82 (91)
62 PF13192 Thioredoxin_3: Thiore 97.3 0.0019 4E-08 48.2 8.2 47 129-185 9-59 (76)
63 cd03058 GST_N_Tau GST_N family 97.3 0.0014 3.1E-08 47.7 7.5 69 116-195 1-69 (74)
64 cd03052 GST_N_GDAP1 GST_N fami 97.3 0.00099 2.2E-08 49.3 6.7 68 116-194 1-70 (73)
65 TIGR00412 redox_disulf_2 small 97.3 0.00099 2.2E-08 49.8 6.6 54 116-186 3-60 (76)
66 KOG3029 Glutathione S-transfer 97.2 0.0015 3.2E-08 61.6 7.9 86 112-211 87-178 (370)
67 cd02975 PfPDO_like_N Pyrococcu 97.2 0.002 4.4E-08 51.6 7.8 54 114-181 23-81 (113)
68 cd03042 GST_N_Zeta GST_N famil 97.2 0.0016 3.4E-08 46.8 6.4 67 117-194 2-70 (73)
69 cd03076 GST_N_Pi GST_N family, 97.1 0.0029 6.3E-08 46.4 7.7 68 116-195 2-69 (73)
70 TIGR01616 nitro_assoc nitrogen 97.0 0.0043 9.4E-08 51.5 8.7 47 115-167 2-48 (126)
71 cd03049 GST_N_3 GST_N family, 97.0 0.0024 5.2E-08 46.3 6.4 66 117-194 2-70 (73)
72 cd03039 GST_N_Sigma_like GST_N 97.0 0.0032 7E-08 45.6 6.8 67 117-194 2-68 (72)
73 TIGR01295 PedC_BrcD bacterioci 97.0 0.0029 6.3E-08 51.7 7.1 70 114-189 24-106 (122)
74 PRK10026 arsenate reductase; P 96.9 0.0018 3.9E-08 55.0 5.6 48 115-168 3-50 (141)
75 cd03034 ArsC_ArsC Arsenate Red 96.9 0.0017 3.7E-08 52.3 5.2 47 116-168 1-47 (112)
76 TIGR00014 arsC arsenate reduct 96.9 0.0019 4.1E-08 52.3 5.2 47 116-168 1-47 (114)
77 cd02949 TRX_NTR TRX domain, no 96.9 0.0084 1.8E-07 46.0 8.5 60 114-187 14-81 (97)
78 PRK10387 glutaredoxin 2; Provi 96.9 0.0048 1.1E-07 53.0 7.9 69 116-197 1-70 (210)
79 COG1393 ArsC Arsenate reductas 96.9 0.002 4.2E-08 53.0 5.1 48 115-168 2-49 (117)
80 TIGR02182 GRXB Glutaredoxin, G 96.9 0.004 8.6E-08 54.6 7.4 67 118-197 2-69 (209)
81 cd03048 GST_N_Ure2p_like GST_N 96.8 0.0055 1.2E-07 45.4 7.1 68 116-195 2-74 (81)
82 cd02947 TRX_family TRX family; 96.8 0.0062 1.3E-07 43.8 7.0 59 114-186 11-76 (93)
83 cd01659 TRX_superfamily Thiore 96.8 0.0057 1.2E-07 39.7 6.0 56 116-183 1-61 (69)
84 PRK10853 putative reductase; P 96.7 0.0026 5.6E-08 52.1 5.0 47 116-168 2-48 (118)
85 COG4545 Glutaredoxin-related p 96.6 0.0066 1.4E-07 46.9 5.7 70 117-193 5-82 (85)
86 cd03080 GST_N_Metaxin_like GST 96.5 0.014 3.1E-07 42.8 7.2 68 116-196 2-70 (75)
87 cd03050 GST_N_Theta GST_N fami 96.5 0.018 3.9E-07 42.1 7.5 67 117-194 2-70 (76)
88 cd03043 GST_N_1 GST_N family, 96.4 0.018 4E-07 42.3 7.3 65 125-194 5-70 (73)
89 cd03038 GST_N_etherase_LigE GS 96.4 0.0074 1.6E-07 45.2 5.0 65 126-196 12-79 (84)
90 cd02953 DsbDgamma DsbD gamma f 96.3 0.018 3.9E-07 44.4 6.8 49 128-181 21-78 (104)
91 PRK09481 sspA stringent starva 96.2 0.025 5.5E-07 49.2 8.3 71 112-194 7-77 (211)
92 PHA02278 thioredoxin-like prot 96.2 0.031 6.7E-07 44.5 8.0 65 112-186 13-85 (103)
93 TIGR02187 GlrX_arch Glutaredox 96.2 0.014 2.9E-07 51.7 6.5 54 115-183 136-194 (215)
94 cd03044 GST_N_EF1Bgamma GST_N 96.2 0.021 4.6E-07 41.8 6.5 61 129-194 8-70 (75)
95 TIGR00862 O-ClC intracellular 96.2 0.033 7.1E-07 50.8 9.1 76 116-197 3-80 (236)
96 PF00085 Thioredoxin: Thioredo 96.1 0.026 5.6E-07 42.3 6.8 61 113-187 17-85 (103)
97 PF13409 GST_N_2: Glutathione 96.1 0.011 2.4E-07 43.2 4.6 64 129-197 1-68 (70)
98 cd03046 GST_N_GTT1_like GST_N 96.0 0.028 6E-07 40.6 6.3 61 131-196 9-71 (76)
99 PF03960 ArsC: ArsC family; I 95.9 0.019 4.2E-07 45.7 5.8 41 128-168 4-44 (110)
100 PLN03165 chaperone protein dna 95.9 0.0091 2E-07 48.9 3.8 49 214-262 42-93 (111)
101 cd03047 GST_N_2 GST_N family, 95.8 0.043 9.3E-07 39.8 6.8 66 117-193 2-69 (73)
102 cd03057 GST_N_Beta GST_N famil 95.8 0.04 8.7E-07 40.2 6.5 66 117-194 2-70 (77)
103 TIGR03140 AhpF alkyl hydropero 95.7 0.023 4.9E-07 56.6 6.4 62 111-187 116-182 (515)
104 PTZ00051 thioredoxin; Provisio 95.7 0.082 1.8E-06 39.9 8.1 60 114-187 19-85 (98)
105 cd02956 ybbN ybbN protein fami 95.7 0.068 1.5E-06 40.3 7.6 59 114-186 13-79 (96)
106 cd02957 Phd_like Phosducin (Ph 95.6 0.055 1.2E-06 42.8 7.2 67 114-195 25-98 (113)
107 PRK15317 alkyl hydroperoxide r 95.6 0.026 5.7E-07 56.1 6.3 62 111-187 115-181 (517)
108 cd02989 Phd_like_TxnDC9 Phosdu 95.5 0.065 1.4E-06 42.9 7.3 60 114-187 23-89 (113)
109 TIGR01068 thioredoxin thioredo 95.5 0.15 3.1E-06 37.9 8.7 59 114-186 15-81 (101)
110 PF13098 Thioredoxin_2: Thiore 95.3 0.099 2.1E-06 40.4 7.5 70 113-192 5-105 (112)
111 cd02954 DIM1 Dim1 family; Dim1 95.2 0.11 2.4E-06 42.5 7.9 60 114-187 15-82 (114)
112 TIGR02187 GlrX_arch Glutaredox 95.2 0.088 1.9E-06 46.5 7.7 63 114-186 21-90 (215)
113 cd02951 SoxW SoxW family; SoxW 95.1 0.11 2.3E-06 41.5 7.2 60 114-183 15-93 (125)
114 cd02985 TRX_CDSP32 TRX family, 95.1 0.22 4.7E-06 38.8 8.8 62 114-186 16-84 (103)
115 PRK10996 thioredoxin 2; Provis 95.0 0.11 2.3E-06 43.1 7.3 59 114-186 53-119 (139)
116 TIGR03143 AhpF_homolog putativ 94.9 0.057 1.2E-06 54.4 6.5 59 112-185 476-539 (555)
117 PRK09381 trxA thioredoxin; Pro 94.9 0.14 3E-06 39.7 7.2 60 114-187 22-89 (109)
118 TIGR01126 pdi_dom protein disu 94.7 0.12 2.7E-06 38.6 6.4 52 115-181 16-75 (102)
119 cd02987 Phd_like_Phd Phosducin 94.6 0.19 4.2E-06 43.5 8.0 79 114-207 84-173 (175)
120 PLN02378 glutathione S-transfe 94.3 0.17 3.7E-06 44.3 7.3 61 128-194 18-78 (213)
121 PRK15113 glutathione S-transfe 94.3 0.24 5.2E-06 43.2 8.2 71 115-194 5-77 (214)
122 TIGR01262 maiA maleylacetoacet 94.3 0.089 1.9E-06 45.1 5.3 62 129-195 7-71 (210)
123 PLN02817 glutathione dehydroge 93.9 0.18 4E-06 46.4 7.0 61 129-195 72-132 (265)
124 cd03004 PDI_a_ERdj5_C PDIa fam 93.8 0.34 7.4E-06 37.0 7.2 47 128-183 29-83 (104)
125 cd02984 TRX_PICOT TRX domain, 93.6 0.46 9.9E-06 35.6 7.5 59 114-186 15-81 (97)
126 PLN02473 glutathione S-transfe 93.5 0.27 5.8E-06 42.4 7.0 69 116-195 3-73 (214)
127 cd03077 GST_N_Alpha GST_N fami 93.5 0.58 1.3E-05 34.8 7.8 69 116-194 2-70 (79)
128 cd02994 PDI_a_TMX PDIa family, 93.4 0.19 4.1E-06 38.3 5.2 55 115-184 19-82 (101)
129 cd02963 TRX_DnaJ TRX domain, D 93.3 0.48 1E-05 37.4 7.5 59 114-186 25-92 (111)
130 cd02948 TRX_NDPK TRX domain, T 93.2 0.9 2E-05 35.1 8.9 58 114-186 18-84 (102)
131 PF06953 ArsD: Arsenical resis 93.2 0.42 9.2E-06 39.8 7.2 60 134-195 30-94 (123)
132 cd02965 HyaE HyaE family; HyaE 93.0 0.4 8.7E-06 39.1 6.8 63 113-189 27-99 (111)
133 cd02961 PDI_a_family Protein D 93.0 0.43 9.4E-06 34.8 6.5 45 128-181 25-77 (101)
134 cd02950 TxlA TRX-like protein 92.8 0.62 1.3E-05 38.8 7.9 82 114-209 21-114 (142)
135 KOG0907 Thioredoxin [Posttrans 92.8 0.57 1.2E-05 37.7 7.3 58 113-184 21-85 (106)
136 cd02996 PDI_a_ERp44 PDIa famil 92.7 0.42 9.1E-06 37.0 6.3 48 128-184 28-89 (108)
137 cd03003 PDI_a_ERdj5_N PDIa fam 92.6 0.45 9.8E-06 36.3 6.3 48 128-184 28-83 (101)
138 KOG0910 Thioredoxin-like prote 92.6 0.17 3.6E-06 43.6 4.2 56 116-186 65-128 (150)
139 KOG0406 Glutathione S-transfer 92.4 0.77 1.7E-05 42.2 8.4 65 113-189 7-72 (231)
140 cd03065 PDI_b_Calsequestrin_N 91.9 0.76 1.6E-05 37.8 7.1 62 112-187 26-101 (120)
141 PRK10877 protein disulfide iso 91.8 1.5 3.3E-05 39.6 9.7 33 112-150 107-142 (232)
142 cd03002 PDI_a_MPD1_like PDI fa 91.6 0.54 1.2E-05 36.0 5.7 47 128-181 28-80 (109)
143 cd02959 ERp19 Endoplasmic reti 91.4 0.41 9E-06 38.6 5.1 63 114-187 20-91 (117)
144 COG3118 Thioredoxin domain-con 91.4 0.53 1.1E-05 44.8 6.4 65 112-190 42-114 (304)
145 KOG1422 Intracellular Cl- chan 91.4 0.58 1.3E-05 42.6 6.3 63 128-196 19-81 (221)
146 cd03001 PDI_a_P5 PDIa family, 91.3 0.98 2.1E-05 34.0 6.8 44 128-180 28-77 (103)
147 cd03078 GST_N_Metaxin1_like GS 90.7 2.5 5.5E-05 31.3 8.4 61 124-197 10-70 (73)
148 PF00684 DnaJ_CXXCXGXG: DnaJ c 90.5 0.37 8.1E-06 35.3 3.6 40 223-262 14-63 (66)
149 COG0484 DnaJ DnaJ-class molecu 90.4 0.17 3.7E-06 49.3 2.3 48 215-262 144-204 (371)
150 cd02962 TMX2 TMX2 family; comp 90.3 1.3 2.9E-05 37.7 7.3 56 128-187 57-122 (152)
151 cd02998 PDI_a_ERp38 PDIa famil 90.1 1 2.2E-05 33.7 6.0 45 128-181 28-81 (105)
152 PRK10357 putative glutathione 90.0 0.82 1.8E-05 39.1 5.9 64 117-192 2-66 (202)
153 PLN02395 glutathione S-transfe 89.9 1.2 2.7E-05 38.2 7.0 68 116-195 3-72 (215)
154 cd03005 PDI_a_ERp46 PDIa famil 89.5 1.1 2.3E-05 33.7 5.6 49 128-185 26-85 (102)
155 PRK13728 conjugal transfer pro 89.5 2.5 5.3E-05 37.4 8.6 81 115-207 72-173 (181)
156 cd02999 PDI_a_ERp44_like PDIa 89.5 1.3 2.9E-05 34.4 6.3 44 128-180 28-77 (100)
157 cd02952 TRP14_like Human TRX-r 89.4 0.76 1.6E-05 37.8 5.0 50 128-181 38-96 (119)
158 COG2999 GrxB Glutaredoxin 2 [P 89.0 0.53 1.1E-05 42.1 4.0 62 129-197 8-70 (215)
159 PRK10767 chaperone protein Dna 89.0 0.38 8.3E-06 46.3 3.5 63 200-262 125-202 (371)
160 cd03020 DsbA_DsbC_DsbG DsbA fa 89.0 2.9 6.2E-05 36.2 8.6 35 112-152 77-113 (197)
161 COG3019 Predicted metal-bindin 88.9 3.2 6.9E-05 35.7 8.5 76 114-200 26-104 (149)
162 cd02955 SSP411 TRX domain, SSP 88.9 1.7 3.7E-05 35.8 6.8 64 113-186 15-94 (124)
163 cd02988 Phd_like_VIAF Phosduci 88.6 1.6 3.4E-05 38.5 6.8 77 114-207 103-190 (192)
164 cd02986 DLP Dim1 family, Dim1- 88.6 2.2 4.7E-05 35.2 7.1 61 112-186 13-81 (114)
165 cd02997 PDI_a_PDIR PDIa family 88.5 1.6 3.6E-05 32.7 6.0 50 128-184 27-86 (104)
166 PF13901 DUF4206: Domain of un 88.4 0.11 2.3E-06 46.3 -0.8 86 175-262 102-196 (202)
167 PTZ00057 glutathione s-transfe 88.4 4.6 0.0001 34.9 9.5 72 116-194 5-77 (205)
168 COG0625 Gst Glutathione S-tran 88.3 1.2 2.6E-05 38.4 5.8 59 129-192 8-68 (211)
169 PRK14300 chaperone protein Dna 88.3 0.44 9.4E-06 46.1 3.3 63 200-262 128-205 (372)
170 PRK14287 chaperone protein Dna 88.0 0.45 9.7E-06 46.0 3.2 48 215-262 140-202 (371)
171 PRK13972 GSH-dependent disulfi 88.0 2.2 4.8E-05 37.0 7.3 54 116-181 2-57 (215)
172 cd02972 DsbA_family DsbA famil 87.9 1.8 4E-05 31.2 5.8 33 116-154 1-39 (98)
173 cd03079 GST_N_Metaxin2 GST_N f 87.5 3.1 6.8E-05 31.4 6.9 56 129-196 16-71 (74)
174 PRK14290 chaperone protein Dna 87.4 0.52 1.1E-05 45.4 3.2 49 214-262 150-212 (365)
175 PF13719 zinc_ribbon_5: zinc-r 86.9 0.51 1.1E-05 31.1 2.0 29 224-252 2-33 (37)
176 cd03008 TryX_like_RdCVF Trypar 86.6 8.6 0.00019 32.6 9.9 24 114-142 26-49 (146)
177 cd03075 GST_N_Mu GST_N family, 86.6 4.6 0.0001 30.2 7.5 64 130-193 9-75 (82)
178 cd02993 PDI_a_APS_reductase PD 86.6 1.6 3.4E-05 34.1 5.1 53 115-180 24-83 (109)
179 PTZ00443 Thioredoxin domain-co 86.5 3.3 7.1E-05 37.6 7.7 50 128-186 62-119 (224)
180 KOG2813 Predicted molecular ch 86.3 0.43 9.2E-06 46.0 2.0 20 215-234 189-208 (406)
181 cd03000 PDI_a_TMX3 PDIa family 86.2 2.1 4.5E-05 32.9 5.5 56 114-183 16-81 (104)
182 PLN00410 U5 snRNP protein, DIM 86.1 4.9 0.00011 34.2 8.1 50 127-184 32-89 (142)
183 PRK11752 putative S-transferas 85.9 3.2 7E-05 37.8 7.5 73 110-194 39-123 (264)
184 PRK14284 chaperone protein Dna 85.6 0.81 1.7E-05 44.5 3.5 49 214-262 159-218 (391)
185 cd02995 PDI_a_PDI_a'_C PDIa fa 85.5 2.2 4.8E-05 31.9 5.3 51 115-181 21-79 (104)
186 KOG4420 Uncharacterized conser 84.8 0.74 1.6E-05 43.4 2.7 73 116-198 27-100 (325)
187 TIGR02349 DnaJ_bact chaperone 84.7 0.8 1.7E-05 43.7 3.0 49 214-262 144-207 (354)
188 COG5494 Predicted thioredoxin/ 84.3 5.1 0.00011 36.8 7.8 68 114-196 11-84 (265)
189 PRK14285 chaperone protein Dna 84.2 0.99 2.1E-05 43.6 3.4 49 214-262 147-206 (365)
190 PRK14295 chaperone protein Dna 84.2 0.91 2E-05 44.2 3.2 49 214-262 167-226 (389)
191 PRK14286 chaperone protein Dna 84.0 0.92 2E-05 43.9 3.1 63 200-262 133-210 (372)
192 PRK00293 dipZ thiol:disulfide 83.9 4.3 9.2E-05 41.5 8.0 58 114-181 475-540 (571)
193 cd03006 PDI_a_EFP1_N PDIa fami 83.9 3.3 7.2E-05 33.4 5.9 55 116-184 33-95 (113)
194 PRK14289 chaperone protein Dna 83.8 0.83 1.8E-05 44.3 2.7 63 200-262 137-218 (386)
195 PRK10542 glutathionine S-trans 83.7 3.3 7.1E-05 35.1 6.1 59 131-194 9-71 (201)
196 COG0178 UvrA Excinuclease ATPa 83.6 1.2 2.6E-05 47.7 3.9 50 184-234 696-763 (935)
197 PRK14291 chaperone protein Dna 83.4 1.1 2.3E-05 43.5 3.3 63 200-262 139-215 (382)
198 PF00684 DnaJ_CXXCXGXG: DnaJ c 83.2 1.4 3.1E-05 32.2 3.2 36 214-254 16-66 (66)
199 PRK14282 chaperone protein Dna 83.2 1 2.2E-05 43.4 3.1 49 214-262 153-216 (369)
200 PRK14294 chaperone protein Dna 83.2 1.2 2.5E-05 43.0 3.4 48 215-262 146-204 (366)
201 PRK14298 chaperone protein Dna 83.1 1.1 2.3E-05 43.6 3.1 49 214-262 142-205 (377)
202 PRK14288 chaperone protein Dna 82.9 1.1 2.3E-05 43.4 3.1 48 215-262 142-199 (369)
203 PF13728 TraF: F plasmid trans 82.2 4.5 9.8E-05 36.3 6.6 60 111-181 119-189 (215)
204 PF02798 GST_N: Glutathione S- 82.2 6.9 0.00015 28.7 6.6 59 132-194 11-72 (76)
205 PRK14301 chaperone protein Dna 82.2 1.2 2.5E-05 43.2 3.0 49 214-262 145-204 (373)
206 KOG4244 Failed axon connection 82.1 2.1 4.5E-05 40.3 4.5 68 113-193 43-111 (281)
207 COG3340 PepE Peptidase E [Amin 82.0 10 0.00022 34.8 8.8 80 114-207 32-114 (224)
208 PRK14292 chaperone protein Dna 82.0 1.2 2.6E-05 42.9 3.0 49 214-262 140-204 (371)
209 PRK14296 chaperone protein Dna 81.9 1.2 2.7E-05 43.0 3.1 48 215-262 151-213 (372)
210 cd02992 PDI_a_QSOX PDIa family 81.8 3.4 7.4E-05 32.8 5.1 47 128-181 29-84 (114)
211 cd03009 TryX_like_TryX_NRX Try 81.8 7.1 0.00015 31.0 7.0 37 114-155 19-64 (131)
212 PRK14280 chaperone protein Dna 81.7 1.3 2.9E-05 42.8 3.3 49 214-262 144-207 (376)
213 PRK14293 chaperone protein Dna 81.5 1.5 3.2E-05 42.4 3.4 63 200-262 126-207 (374)
214 PRK14283 chaperone protein Dna 81.4 1.6 3.5E-05 42.2 3.7 63 200-262 129-210 (378)
215 PTZ00037 DnaJ_C chaperone prot 81.1 1.4 3E-05 43.6 3.2 48 215-262 152-215 (421)
216 PF14595 Thioredoxin_9: Thiore 81.0 0.78 1.7E-05 38.0 1.2 58 112-181 41-103 (129)
217 smart00653 eIF2B_5 domain pres 81.0 8.8 0.00019 31.3 7.3 69 159-251 39-108 (110)
218 PRK14276 chaperone protein Dna 80.9 1.4 3E-05 42.7 3.1 49 214-262 147-210 (380)
219 PRK14278 chaperone protein Dna 80.4 1.7 3.7E-05 42.2 3.5 48 215-262 141-203 (378)
220 PRK12336 translation initiatio 80.1 10 0.00022 33.8 8.1 34 222-255 96-130 (201)
221 PF11009 DUF2847: Protein of u 79.8 11 0.00025 30.5 7.5 67 112-187 18-92 (105)
222 KOG0868 Glutathione S-transfer 79.7 3.6 7.9E-05 37.0 5.0 70 114-194 4-76 (217)
223 PRK14296 chaperone protein Dna 79.5 1.5 3.3E-05 42.4 2.9 36 215-256 168-218 (372)
224 cd02982 PDI_b'_family Protein 79.5 4.8 0.0001 30.3 5.1 47 128-181 22-74 (103)
225 PRK14297 chaperone protein Dna 79.3 1.8 3.8E-05 42.0 3.2 49 214-262 149-212 (380)
226 PRK14280 chaperone protein Dna 79.0 2 4.3E-05 41.6 3.5 37 214-256 161-212 (376)
227 PRK14288 chaperone protein Dna 79.0 1.8 3.9E-05 41.8 3.2 37 214-256 157-204 (369)
228 PF13899 Thioredoxin_7: Thiore 78.9 5.6 0.00012 29.4 5.2 37 113-154 17-62 (82)
229 PTZ00062 glutaredoxin; Provisi 78.9 6.4 0.00014 35.3 6.4 54 113-188 17-77 (204)
230 PRK14279 chaperone protein Dna 78.7 1.7 3.7E-05 42.4 2.9 48 214-261 174-232 (392)
231 cd03022 DsbA_HCCA_Iso DsbA fam 78.4 1.9 4.2E-05 36.2 2.8 63 134-196 124-188 (192)
232 PTZ00037 DnaJ_C chaperone prot 78.4 1.7 3.8E-05 42.9 2.9 39 215-257 168-221 (421)
233 PRK14281 chaperone protein Dna 78.3 1.9 4.1E-05 42.1 3.1 63 200-262 146-226 (397)
234 PRK14277 chaperone protein Dna 78.2 1.8 4E-05 42.0 3.0 63 200-262 138-219 (386)
235 PRK14279 chaperone protein Dna 78.1 2.2 4.7E-05 41.6 3.4 38 214-257 191-239 (392)
236 cd03023 DsbA_Com1_like DsbA fa 77.9 1.3 2.8E-05 35.3 1.6 63 134-196 86-150 (154)
237 cd02964 TryX_like_family Trypa 77.9 11 0.00023 30.2 7.0 37 114-155 18-63 (132)
238 PRK14285 chaperone protein Dna 77.9 1.9 4.2E-05 41.6 3.0 37 215-257 165-212 (365)
239 KOG2767 Translation initiation 77.6 1.6 3.6E-05 42.4 2.4 77 160-257 40-131 (400)
240 KOG2813 Predicted molecular ch 77.4 1.6 3.4E-05 42.2 2.2 49 214-262 199-263 (406)
241 PRK14286 chaperone protein Dna 77.3 2.5 5.4E-05 40.9 3.6 38 214-257 168-216 (372)
242 PRK14284 chaperone protein Dna 77.2 2.1 4.5E-05 41.7 3.0 37 214-256 176-223 (391)
243 PF10865 DUF2703: Domain of un 77.1 11 0.00024 31.2 6.9 79 127-240 12-104 (120)
244 PRK14301 chaperone protein Dna 77.1 2.3 5E-05 41.2 3.3 38 214-257 162-210 (373)
245 TIGR02642 phage_xxxx uncharact 77.0 1.9 4.1E-05 38.4 2.5 27 213-239 99-130 (186)
246 TIGR02349 DnaJ_bact chaperone 77.0 2.6 5.7E-05 40.2 3.6 38 214-257 161-213 (354)
247 TIGR02740 TraF-like TraF-like 77.0 5.3 0.00012 37.0 5.5 49 128-181 176-235 (271)
248 PRK14282 chaperone protein Dna 76.7 2.2 4.7E-05 41.2 3.0 37 215-257 171-222 (369)
249 PRK14276 chaperone protein Dna 76.4 2.3 4.9E-05 41.3 3.0 37 214-256 164-215 (380)
250 PRK14277 chaperone protein Dna 76.4 2.7 5.8E-05 40.9 3.5 37 214-256 173-224 (386)
251 PRK10767 chaperone protein Dna 76.4 2.6 5.6E-05 40.6 3.4 37 215-257 161-208 (371)
252 PRK14278 chaperone protein Dna 76.3 2.4 5.3E-05 41.1 3.2 36 215-256 158-208 (378)
253 KOG0712 Molecular chaperone (D 75.8 1.9 4.1E-05 41.7 2.3 63 200-262 110-193 (337)
254 KOG1695 Glutathione S-transfer 75.8 9.9 0.00022 34.2 6.7 60 129-194 11-70 (206)
255 PRK03147 thiol-disulfide oxido 75.5 23 0.00049 29.2 8.5 37 114-155 62-105 (173)
256 PRK14297 chaperone protein Dna 75.2 3 6.4E-05 40.4 3.5 37 214-256 166-217 (380)
257 PRK14295 chaperone protein Dna 75.0 3.3 7.2E-05 40.3 3.8 38 214-257 184-232 (389)
258 cd03010 TlpA_like_DsbE TlpA-li 75.0 19 0.00042 28.2 7.6 29 128-156 35-67 (127)
259 PRK14292 chaperone protein Dna 74.9 2.3 5E-05 41.0 2.6 34 222-257 137-170 (371)
260 PRK14294 chaperone protein Dna 74.0 3.2 6.9E-05 40.0 3.3 36 215-256 163-209 (366)
261 PRK14300 chaperone protein Dna 73.6 3.4 7.4E-05 39.9 3.5 36 215-256 164-210 (372)
262 PF08271 TF_Zn_Ribbon: TFIIB z 73.6 3.2 7E-05 27.8 2.3 24 226-250 2-25 (43)
263 PRK14873 primosome assembly pr 73.3 2.9 6.2E-05 43.8 3.0 44 215-262 385-429 (665)
264 TIGR00595 priA primosomal prot 72.8 3 6.5E-05 42.0 3.0 44 215-262 215-260 (505)
265 PRK14290 chaperone protein Dna 72.7 3.3 7.2E-05 39.9 3.1 36 215-256 167-217 (365)
266 PRK14298 chaperone protein Dna 72.3 3.1 6.8E-05 40.3 2.9 38 214-257 159-211 (377)
267 PRK14281 chaperone protein Dna 72.2 3.5 7.5E-05 40.3 3.2 38 214-257 180-232 (397)
268 PRK14293 chaperone protein Dna 72.1 2.3 5.1E-05 41.1 1.9 32 222-256 141-172 (374)
269 PF11287 DUF3088: Protein of u 71.2 8.6 0.00019 31.7 4.7 52 126-183 20-76 (112)
270 PF13462 Thioredoxin_4: Thiore 71.0 7.3 0.00016 31.6 4.4 24 172-195 133-156 (162)
271 PF10568 Tom37: Outer mitochon 70.2 20 0.00043 26.8 6.2 54 129-195 13-70 (72)
272 PF13717 zinc_ribbon_4: zinc-r 70.2 3.7 8E-05 26.9 2.0 29 224-252 2-33 (36)
273 PRK14291 chaperone protein Dna 70.1 3.1 6.6E-05 40.4 2.3 37 214-257 174-221 (382)
274 TIGR02642 phage_xxxx uncharact 69.6 3.6 7.8E-05 36.6 2.4 30 224-257 99-128 (186)
275 PRK15412 thiol:disulfide inter 69.5 25 0.00055 30.1 7.7 30 128-157 78-110 (185)
276 TIGR00424 APS_reduc 5'-adenyly 69.1 13 0.00029 37.3 6.6 49 128-183 381-438 (463)
277 PF06764 DUF1223: Protein of u 68.1 29 0.00063 31.1 7.9 66 116-190 2-86 (202)
278 PF03479 DUF296: Domain of unk 68.0 1.2 2.6E-05 36.2 -0.9 23 54-76 76-98 (120)
279 PRK14283 chaperone protein Dna 68.0 4.3 9.4E-05 39.3 2.8 32 222-256 144-175 (378)
280 cd02958 UAS UAS family; UAS is 67.7 11 0.00023 29.6 4.6 71 113-195 17-103 (114)
281 PRK14289 chaperone protein Dna 67.7 4.8 0.0001 39.0 3.0 37 214-256 172-223 (386)
282 PRK14287 chaperone protein Dna 67.7 4.7 0.0001 39.0 3.0 38 214-257 156-208 (371)
283 TIGR00385 dsbE periplasmic pro 67.4 29 0.00063 29.3 7.5 37 114-155 64-103 (173)
284 PRK12495 hypothetical protein; 67.3 7.6 0.00016 35.6 4.0 25 200-224 29-53 (226)
285 PRK05580 primosome assembly pr 67.3 4.5 9.8E-05 42.2 2.9 44 215-262 383-428 (679)
286 PTZ00102 disulphide isomerase; 66.6 17 0.00037 35.1 6.7 48 128-184 59-117 (477)
287 TIGR02738 TrbB type-F conjugat 65.0 30 0.00065 29.4 7.1 37 112-154 50-90 (153)
288 PF15616 TerY-C: TerY-C metal 64.4 6.8 0.00015 33.1 2.9 39 214-256 78-117 (131)
289 cd03031 GRX_GRX_like Glutaredo 63.7 5.6 0.00012 33.9 2.4 27 226-261 101-139 (147)
290 cd03011 TlpA_like_ScsD_MtbDsbE 63.6 6.4 0.00014 30.6 2.5 25 114-143 21-45 (123)
291 PF14205 Cys_rich_KTR: Cystein 63.0 8.9 0.00019 27.8 2.9 35 222-256 2-40 (55)
292 TIGR01130 ER_PDI_fam protein d 62.7 23 0.0005 33.7 6.6 49 128-185 28-87 (462)
293 COG3634 AhpF Alkyl hydroperoxi 62.5 12 0.00027 37.1 4.7 63 111-188 115-182 (520)
294 PLN02309 5'-adenylylsulfate re 62.1 16 0.00034 36.8 5.5 46 128-181 375-428 (457)
295 COG0484 DnaJ DnaJ-class molecu 61.6 6.4 0.00014 38.6 2.6 32 222-256 140-171 (371)
296 COG1661 Predicted DNA-binding 61.5 4.3 9.3E-05 34.7 1.2 22 55-76 84-105 (141)
297 PF07315 DUF1462: Protein of u 61.2 24 0.00051 28.2 5.3 41 144-187 37-79 (93)
298 cd00079 HELICc Helicase superf 60.0 18 0.00039 27.7 4.5 50 112-168 27-76 (131)
299 PRK10954 periplasmic protein d 59.8 9.5 0.00021 33.4 3.2 58 134-191 124-183 (207)
300 cd03019 DsbA_DsbA DsbA family, 59.6 6.1 0.00013 32.6 1.8 58 134-191 100-159 (178)
301 smart00594 UAS UAS domain. 59.2 48 0.001 26.5 7.0 56 114-181 28-92 (122)
302 PTZ00102 disulphide isomerase; 58.8 23 0.00049 34.3 5.9 54 114-181 376-437 (477)
303 PF09297 zf-NADH-PPase: NADH p 58.6 6.7 0.00014 24.7 1.5 24 227-252 6-29 (32)
304 PHA00626 hypothetical protein 58.0 8.5 0.00018 28.2 2.1 20 244-263 11-31 (59)
305 cd02967 mauD Methylamine utili 57.6 45 0.00098 25.3 6.4 16 128-143 31-46 (114)
306 COG4837 Uncharacterized protei 56.6 32 0.0007 27.8 5.3 67 113-187 4-86 (106)
307 smart00834 CxxC_CXXC_SSSS Puta 54.6 7.5 0.00016 25.1 1.3 27 226-252 7-34 (41)
308 TIGR02739 TraF type-F conjugat 54.5 23 0.0005 32.9 4.9 60 111-181 149-219 (256)
309 PLN03165 chaperone protein dna 54.5 9.2 0.0002 31.4 2.0 21 215-235 77-97 (111)
310 PLN02189 cellulose synthase 54.2 9.4 0.0002 42.0 2.6 37 213-261 34-82 (1040)
311 TIGR02098 MJ0042_CXXC MJ0042 f 53.2 12 0.00026 24.1 2.1 29 225-253 3-34 (38)
312 PRK11657 dsbG disulfide isomer 53.0 23 0.00051 32.3 4.7 33 114-152 119-155 (251)
313 PF08792 A2L_zn_ribbon: A2L zi 52.1 9.2 0.0002 24.7 1.3 24 226-251 5-28 (33)
314 TIGR00630 uvra excinuclease AB 51.8 11 0.00024 41.1 2.6 22 214-235 737-770 (924)
315 KOG0867 Glutathione S-transfer 51.1 54 0.0012 29.2 6.6 70 115-195 2-73 (226)
316 TIGR01162 purE phosphoribosyla 50.8 47 0.001 28.8 5.9 69 129-197 10-100 (156)
317 TIGR00311 aIF-2beta translatio 50.1 18 0.0004 30.4 3.2 35 222-256 95-130 (133)
318 PF06110 DUF953: Eukaryotic pr 50.1 25 0.00054 29.0 4.0 63 113-180 19-94 (119)
319 PF14569 zf-UDP: Zinc-binding 49.8 5.5 0.00012 30.9 0.0 21 212-232 8-36 (80)
320 PF04566 RNA_pol_Rpb2_4: RNA p 49.7 16 0.00035 26.8 2.5 19 179-197 1-19 (63)
321 PF01323 DSBA: DSBA-like thior 49.6 4.8 0.0001 33.7 -0.3 62 135-196 125-189 (193)
322 PLN02436 cellulose synthase A 49.6 13 0.00027 41.2 2.6 20 213-232 36-63 (1094)
323 PRK11509 hydrogenase-1 operon 49.5 41 0.0009 28.3 5.2 64 115-190 36-108 (132)
324 PRK03988 translation initiatio 49.0 19 0.00041 30.6 3.1 35 222-256 100-135 (138)
325 PF09413 DUF2007: Domain of un 49.0 13 0.00028 26.6 1.9 53 116-184 1-53 (67)
326 PLN02400 cellulose synthase 48.6 13 0.00028 41.1 2.6 37 213-261 36-84 (1085)
327 cd02970 PRX_like2 Peroxiredoxi 48.6 93 0.002 24.5 7.1 25 129-153 35-66 (149)
328 PRK00635 excinuclease ABC subu 48.4 18 0.00039 42.2 3.8 50 185-235 1574-1641(1809)
329 PRK14714 DNA polymerase II lar 48.0 12 0.00025 42.1 2.1 43 214-263 668-717 (1337)
330 PF02114 Phosducin: Phosducin; 48.0 27 0.00058 32.5 4.3 83 115-212 148-241 (265)
331 PF11331 DUF3133: Protein of u 47.6 8.8 0.00019 26.8 0.8 34 220-253 2-40 (46)
332 PF04134 DUF393: Protein of un 47.4 75 0.0016 24.6 6.2 69 128-198 5-76 (114)
333 PLN02638 cellulose synthase A 46.8 14 0.00031 40.8 2.6 20 213-232 17-44 (1079)
334 COG0041 PurE Phosphoribosylcar 46.7 94 0.002 27.2 7.1 77 115-195 4-102 (162)
335 cd01480 vWA_collagen_alpha_1-V 46.5 1E+02 0.0023 26.1 7.5 70 113-184 109-184 (186)
336 PF14570 zf-RING_4: RING/Ubox 46.2 5.9 0.00013 27.9 -0.3 20 243-262 21-44 (48)
337 smart00778 Prim_Zn_Ribbon Zinc 45.6 14 0.00031 24.6 1.5 30 223-252 2-33 (37)
338 PF13905 Thioredoxin_8: Thiore 45.5 55 0.0012 24.1 5.0 40 128-168 11-56 (95)
339 PF01873 eIF-5_eIF-2B: Domain 45.1 12 0.00026 31.2 1.3 31 222-252 91-122 (125)
340 cd03146 GAT1_Peptidase_E Type 45.0 55 0.0012 28.8 5.7 63 131-207 46-109 (212)
341 PF14354 Lar_restr_allev: Rest 44.5 17 0.00037 25.6 1.9 28 224-252 3-37 (61)
342 KOG4218 Nuclear hormone recept 44.5 7.5 0.00016 38.1 0.0 49 214-263 16-75 (475)
343 cd02966 TlpA_like_family TlpA- 44.4 77 0.0017 22.9 5.6 28 128-155 29-63 (116)
344 PRK13703 conjugal pilus assemb 43.0 17 0.00037 33.7 2.1 60 111-181 142-212 (248)
345 cd03024 DsbA_FrnE DsbA family, 42.2 64 0.0014 27.2 5.5 23 172-194 172-195 (201)
346 PF08273 Prim_Zn_Ribbon: Zinc- 42.1 23 0.00049 24.0 2.1 29 223-251 2-33 (40)
347 PF03691 UPF0167: Uncharacteri 42.0 92 0.002 27.5 6.5 99 106-209 25-137 (176)
348 cd03023 DsbA_Com1_like DsbA fa 41.5 34 0.00073 27.1 3.4 35 113-153 6-45 (154)
349 PF00731 AIRC: AIR carboxylase 41.1 45 0.00097 28.7 4.3 39 115-157 2-40 (150)
350 KOG3171 Conserved phosducin-li 40.9 36 0.00078 31.6 3.8 38 174-211 210-253 (273)
351 PF12172 DUF35_N: Rubredoxin-l 40.7 12 0.00026 24.1 0.6 19 214-232 12-33 (37)
352 PF14451 Ub-Mut7C: Mut7-C ubiq 40.0 22 0.00047 27.4 2.0 21 132-152 31-51 (81)
353 COG1198 PriA Primosomal protei 39.8 24 0.00053 37.5 3.0 44 215-262 437-482 (730)
354 TIGR02661 MauD methylamine deh 39.6 82 0.0018 27.1 5.8 33 114-151 75-111 (189)
355 PRK14018 trifunctional thiored 39.4 1.1E+02 0.0025 31.3 7.5 25 114-143 57-81 (521)
356 PF13462 Thioredoxin_4: Thiore 39.2 58 0.0013 26.2 4.6 42 110-157 10-59 (162)
357 PF12760 Zn_Tnp_IS1595: Transp 38.7 28 0.00061 23.6 2.2 24 227-251 21-44 (46)
358 KOG0908 Thioredoxin-like prote 38.0 79 0.0017 30.0 5.6 62 114-190 23-94 (288)
359 PF08534 Redoxin: Redoxin; In 37.8 2.1E+02 0.0045 22.8 7.8 47 114-164 29-82 (146)
360 TIGR00108 eRF peptide chain re 37.3 16 0.00034 36.1 1.0 54 182-235 290-357 (409)
361 smart00659 RPOLCX RNA polymera 37.1 22 0.00047 24.4 1.4 27 226-255 4-30 (44)
362 KOG1829 Uncharacterized conser 36.7 12 0.00027 38.7 0.2 132 130-262 393-557 (580)
363 COG0526 TrxA Thiol-disulfide i 36.3 80 0.0017 22.2 4.5 36 128-163 42-84 (127)
364 PRK04023 DNA polymerase II lar 35.5 28 0.0006 38.5 2.6 43 214-263 627-671 (1121)
365 cd02127 PA_hPAP21_like PA_hPAP 35.4 1.1E+02 0.0024 24.7 5.6 64 113-184 34-97 (118)
366 TIGR03143 AhpF_homolog putativ 35.3 75 0.0016 32.1 5.5 44 129-181 377-425 (555)
367 PF07092 DUF1356: Protein of u 34.6 17 0.00038 33.6 0.8 26 214-239 28-53 (238)
368 PF03575 Peptidase_S51: Peptid 34.4 1.4E+02 0.0031 24.7 6.3 23 133-155 2-24 (154)
369 TIGR00595 priA primosomal prot 34.4 28 0.00061 35.1 2.3 35 218-263 207-248 (505)
370 TIGR01130 ER_PDI_fam protein d 34.2 77 0.0017 30.1 5.2 43 128-181 374-425 (462)
371 PRK05282 (alpha)-aspartyl dipe 34.1 1.7E+02 0.0036 26.7 7.1 40 114-154 32-71 (233)
372 PF01396 zf-C4_Topoisom: Topoi 33.5 43 0.00092 22.2 2.3 25 225-249 2-26 (39)
373 COG1107 Archaea-specific RecJ- 33.1 34 0.00074 35.9 2.6 42 214-255 54-106 (715)
374 cd05295 MDH_like Malate dehydr 32.4 1.1E+02 0.0025 30.7 6.2 71 127-197 1-82 (452)
375 COG4566 TtrR Response regulato 32.2 1.3E+02 0.0028 27.3 5.8 35 147-184 51-85 (202)
376 PLN02915 cellulose synthase A 32.0 30 0.00065 38.2 2.2 20 214-233 16-43 (1044)
377 cd03129 GAT1_Peptidase_E_like 31.9 3.1E+02 0.0066 23.8 8.2 83 112-208 28-111 (210)
378 KOG2324 Prolyl-tRNA synthetase 31.6 33 0.00071 34.1 2.1 34 224-257 227-260 (457)
379 PF00578 AhpC-TSA: AhpC/TSA fa 31.4 2.1E+02 0.0046 21.7 6.5 37 114-154 26-69 (124)
380 PRK00564 hypA hydrogenase nick 31.2 43 0.00093 27.3 2.5 20 215-234 73-98 (117)
381 KOG4684 Uncharacterized conser 31.2 18 0.0004 33.3 0.4 17 245-261 171-195 (275)
382 PF14319 Zn_Tnp_IS91: Transpos 31.0 58 0.0013 26.3 3.2 27 200-226 26-55 (111)
383 PF04236 Transp_Tc5_C: Tc5 tra 31.0 28 0.00061 25.8 1.3 19 244-262 27-47 (63)
384 TIGR03676 aRF1/eRF1 peptide ch 30.4 32 0.0007 33.9 1.9 55 182-236 286-354 (403)
385 TIGR03826 YvyF flagellar opero 30.0 91 0.002 26.5 4.3 42 189-233 60-103 (137)
386 COG4332 Uncharacterized protei 29.9 30 0.00064 31.1 1.4 46 215-263 19-72 (203)
387 PRK02935 hypothetical protein; 29.9 33 0.00071 28.2 1.6 26 224-253 70-95 (110)
388 TIGR02605 CxxC_CxxC_SSSS putat 29.5 31 0.00067 23.5 1.2 28 226-253 7-35 (52)
389 cd03012 TlpA_like_DipZ_like Tl 29.0 2E+02 0.0042 22.5 6.0 24 114-142 24-47 (126)
390 KOG3425 Uncharacterized conser 28.7 84 0.0018 26.5 3.8 41 114-154 26-75 (128)
391 COG3011 Predicted thiol-disulf 28.5 1.7E+02 0.0038 24.9 5.8 70 114-194 9-81 (137)
392 KOG2824 Glutaredoxin-related p 28.2 43 0.00094 31.7 2.3 57 1-65 23-81 (281)
393 PF14803 Nudix_N_2: Nudix N-te 28.0 34 0.00074 22.3 1.1 26 227-252 3-30 (34)
394 COG1107 Archaea-specific RecJ- 28.0 35 0.00076 35.7 1.8 13 225-237 54-66 (715)
395 PF09788 Tmemb_55A: Transmembr 27.9 32 0.00069 32.2 1.3 10 253-262 175-184 (256)
396 PTZ00408 NAD-dependent deacety 27.1 36 0.00078 31.1 1.6 37 220-257 113-150 (242)
397 PF04216 FdhE: Protein involve 27.0 43 0.00093 31.1 2.1 34 214-253 173-220 (290)
398 PRK01297 ATP-dependent RNA hel 27.0 1.5E+02 0.0033 29.1 6.0 93 113-212 335-427 (475)
399 PF11023 DUF2614: Protein of u 27.0 30 0.00066 28.6 0.9 28 223-254 68-95 (114)
400 PRK04023 DNA polymerase II lar 26.3 43 0.00094 37.1 2.2 14 135-148 506-519 (1121)
401 PRK15348 type III secretion sy 26.1 97 0.0021 28.8 4.2 91 115-211 20-122 (249)
402 cd02960 AGR Anterior Gradient 26.0 83 0.0018 26.3 3.4 23 113-140 23-45 (130)
403 PRK00635 excinuclease ABC subu 25.9 74 0.0016 37.4 4.0 51 184-235 686-751 (1809)
404 PF01807 zf-CHC2: CHC2 zinc fi 25.8 1.1E+02 0.0024 23.8 3.9 59 192-255 6-65 (97)
405 cd03019 DsbA_DsbA DsbA family, 25.4 91 0.002 25.5 3.6 37 111-153 14-56 (178)
406 PRK00349 uvrA excinuclease ABC 25.3 61 0.0013 35.6 3.1 22 214-235 739-772 (943)
407 PRK04011 peptide chain release 25.3 41 0.0009 33.2 1.7 55 182-236 294-362 (411)
408 cd03007 PDI_a_ERp29_N PDIa fam 24.8 3.8E+02 0.0083 21.8 7.7 63 115-184 21-91 (116)
409 PLN02948 phosphoribosylaminoim 24.8 2.5E+02 0.0054 28.9 7.3 44 109-156 406-449 (577)
410 PF13408 Zn_ribbon_recom: Reco 24.5 1.2E+02 0.0026 20.5 3.5 37 223-260 4-41 (58)
411 PF13905 Thioredoxin_8: Thiore 24.5 2.8E+02 0.0061 20.1 6.6 56 113-181 33-88 (95)
412 PF01927 Mut7-C: Mut7-C RNAse 24.4 43 0.00094 28.0 1.5 47 200-252 73-132 (147)
413 PLN02412 probable glutathione 24.3 2.4E+02 0.0051 23.7 6.0 7 129-135 40-46 (167)
414 COG2143 Thioredoxin-related pr 24.3 2.3E+02 0.0051 25.1 5.9 59 115-184 45-125 (182)
415 COG0551 TopA Zn-finger domain 24.1 78 0.0017 26.1 2.9 9 244-252 60-68 (140)
416 COG2260 Predicted Zn-ribbon RN 23.9 39 0.00084 24.9 0.9 18 244-261 5-23 (59)
417 PF08646 Rep_fac-A_C: Replicat 23.7 54 0.0012 27.0 1.9 29 222-253 16-46 (146)
418 TIGR03439 methyl_EasF probable 23.7 1.8E+02 0.0039 27.8 5.6 26 129-154 84-114 (319)
419 PRK12775 putative trifunctiona 23.7 1.2E+02 0.0025 33.5 4.9 29 173-201 717-745 (1006)
420 PF01096 TFIIS_C: Transcriptio 23.2 45 0.00097 22.0 1.1 28 225-252 1-36 (39)
421 PHA02558 uvsW UvsW helicase; P 23.1 4E+02 0.0086 26.6 8.2 62 114-187 345-406 (501)
422 cd03017 PRX_BCP Peroxiredoxin 23.1 3.2E+02 0.007 21.3 6.3 36 114-153 24-66 (140)
423 PTZ00110 helicase; Provisional 22.7 2.7E+02 0.0059 28.2 7.0 89 112-212 376-469 (545)
424 PF07449 HyaE: Hydrogenase-1 e 22.6 4.2E+02 0.0091 21.5 6.8 71 114-194 27-103 (107)
425 cd02971 PRX_family Peroxiredox 22.3 3.8E+02 0.0081 20.8 6.9 37 113-153 22-65 (140)
426 PLN02234 1-deoxy-D-xylulose-5- 22.0 1.3E+02 0.0027 31.8 4.5 81 114-205 545-628 (641)
427 PRK00398 rpoP DNA-directed RNA 21.8 83 0.0018 21.1 2.2 9 244-252 21-29 (46)
428 PLN02399 phospholipid hydroper 21.8 2.3E+02 0.005 25.9 5.7 25 128-152 109-140 (236)
429 COG4049 Uncharacterized protei 21.7 56 0.0012 24.1 1.4 17 235-251 8-24 (65)
430 COG1597 LCB5 Sphingosine kinas 21.7 2.2E+02 0.0048 26.7 5.8 52 115-166 4-55 (301)
431 PLN02790 transketolase 21.5 2.5E+02 0.0055 29.4 6.6 87 114-210 541-641 (654)
432 PF03358 FMN_red: NADPH-depend 21.4 1E+02 0.0022 24.8 3.1 41 115-155 2-42 (152)
433 PF05180 zf-DNL: DNL zinc fing 21.4 41 0.00089 25.2 0.6 30 227-256 7-41 (66)
434 COG3809 Uncharacterized protei 20.8 71 0.0015 25.1 1.9 28 225-252 2-29 (88)
435 cd03015 PRX_Typ2cys Peroxiredo 20.6 3.4E+02 0.0074 22.6 6.2 35 114-152 30-71 (173)
436 PRK00415 rps27e 30S ribosomal 20.5 1.1E+02 0.0024 22.5 2.7 28 224-252 11-38 (59)
437 PRK00420 hypothetical protein; 20.4 59 0.0013 26.8 1.4 11 243-253 39-49 (112)
438 PF09526 DUF2387: Probable met 20.4 1.1E+02 0.0023 23.2 2.7 30 223-252 4-38 (71)
439 PRK07220 DNA topoisomerase I; 20.3 1.1E+02 0.0024 32.5 3.8 50 214-263 590-665 (740)
440 PF13364 BetaGal_dom4_5: Beta- 20.3 67 0.0015 25.6 1.7 17 174-190 62-78 (111)
441 TIGR03655 anti_R_Lar restricti 20.3 81 0.0018 21.9 1.9 30 225-254 2-36 (53)
442 PF09788 Tmemb_55A: Transmembr 20.3 74 0.0016 29.8 2.2 34 221-254 62-95 (256)
443 COG5429 Uncharacterized secret 20.3 88 0.0019 29.3 2.6 67 114-189 43-128 (261)
444 smart00440 ZnF_C2C2 C2C2 Zinc 20.1 1E+02 0.0022 20.4 2.3 27 226-252 2-36 (40)
445 PRK14892 putative transcriptio 20.0 67 0.0015 25.8 1.6 9 223-231 20-28 (99)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-54 Score=393.55 Aligned_cols=157 Identities=57% Similarity=1.044 Sum_probs=147.3
Q ss_pred cccCCCCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEE
Q 024534 106 TIRIPGADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRY 185 (266)
Q Consensus 106 ~~~~p~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~ 185 (266)
..|+|+++++||||+|||||||+||++|..||+||++++|.|+||||+||..|++||++++|. .....++|+|||+|+|
T Consensus 123 ~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~-~~~~~~LPrVFV~Gry 201 (281)
T KOG2824|consen 123 EVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGE-DEKAVSLPRVFVKGRY 201 (281)
T ss_pred hcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhc-ccccCccCeEEEccEE
Confidence 357899999999999999999999999999999999999999999999999999999999996 2347999999999999
Q ss_pred EcchhHHHhHHhhccHHHHhhcCCCCCCccccccCceeeEEcCCCCCcceeEe--cCCCceecCCccccCceecCCCCCC
Q 024534 186 IGGVEEVRQLNETGELKKFVEGLPAAERGVCNICGGYSFVLCGECDGSHKVYA--EKGGGFKSCNACNENGLIRCPSCSY 263 (266)
Q Consensus 186 IGG~del~~L~esGeL~~lL~~~~~~~~~~C~~Cgg~rfv~C~~C~GS~K~~~--~~~~~~~rC~~CNEnGLirCp~C~~ 263 (266)
|||++||++|||.|+|.+||++++......|++|||+||+||..||||+|++. ++.++|+||.+||||||||||.|+.
T Consensus 202 IGgaeeV~~LnE~GkL~~lL~~~p~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs~ 281 (281)
T KOG2824|consen 202 IGGAEEVVRLNEEGKLGKLLKGIPCEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVCSN 281 (281)
T ss_pred eccHHHhhhhhhcchHHHHHhcCCCCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCccCC
Confidence 99999999999999999999999966667999999999999999999999999 4445899999999999999999974
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=1.8e-51 Score=348.01 Aligned_cols=143 Identities=60% Similarity=1.101 Sum_probs=133.6
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
+||||||||||||+||++|++||+||++++|+|+|+||+||.++++||+++++.. +++.++|||||+|+||||+||+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~-~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAE-LKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCC-CCCCCCCEEEECCEEEecHHHHHH
Confidence 5999999999999999999999999999999999999999999999999998851 346899999999999999999999
Q ss_pred HHhhccHHHHhhcCCCCCCc-cccccCceeeEEcCCCCCcceeEecCC---CceecCCccccCceecC
Q 024534 195 LNETGELKKFVEGLPAAERG-VCNICGGYSFVLCGECDGSHKVYAEKG---GGFKSCNACNENGLIRC 258 (266)
Q Consensus 195 L~esGeL~~lL~~~~~~~~~-~C~~Cgg~rfv~C~~C~GS~K~~~~~~---~~~~rC~~CNEnGLirC 258 (266)
|||+|+|+++|++++..... .|++|||.|||||..|+||+|++.++. +.++||++|||||||||
T Consensus 80 L~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 80 LNESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 99999999999998765543 799999999999999999999999872 47999999999999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.91 E-value=2.3e-24 Score=169.44 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L 195 (266)
|+||+||++|+|++...|++|+++|++++|.|+|+||++|++.+++|+++++.. .+..++|||||+|+||||+||+.+|
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~-~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNE-NGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCC-CCCCCCCEEEECCEEeeCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999998631 2468999999999999999999999
Q ss_pred HhhccHHHHhh
Q 024534 196 NETGELKKFVE 206 (266)
Q Consensus 196 ~esGeL~~lL~ 206 (266)
+++|+|+++|+
T Consensus 81 ~e~g~L~~lLk 91 (92)
T cd03030 81 KENNTLEEFLK 91 (92)
T ss_pred HhCCCHHHHhC
Confidence 99999999985
No 4
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.88 E-value=2.6e-22 Score=158.81 Aligned_cols=88 Identities=25% Similarity=0.469 Sum_probs=78.8
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHH---HHHHHHHHHCCCCCCCCCccEEEeCCEEEcc
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSS---FLNELQGILGGGGQSKLTLPRVFIGGRYIGG 188 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~---~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG 188 (266)
.+++|+||+++ +||+|.+++++|++++++|+++||+.++. .++++.+++|. .++|+|||||++|||
T Consensus 6 ~~~~Vvvysk~------~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-----~tvP~Vfi~g~~iGG 74 (99)
T TIGR02189 6 SEKAVVIFSRS------SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-----PAVPAVFVGGKLVGG 74 (99)
T ss_pred ccCCEEEEECC------CCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-----CCcCeEEECCEEEcC
Confidence 45889999977 99999999999999999999999998755 44566666665 999999999999999
Q ss_pred hhHHHhHHhhccHHHHhhcCCC
Q 024534 189 VEEVRQLNETGELKKFVEGLPA 210 (266)
Q Consensus 189 ~del~~L~esGeL~~lL~~~~~ 210 (266)
+||+++|+++|+|+++|+.+++
T Consensus 75 ~ddl~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 75 LENVMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHHHHcCCHHHHHHHhCc
Confidence 9999999999999999988765
No 5
>PRK10824 glutaredoxin-4; Provisional
Probab=99.88 E-value=2.1e-22 Score=164.43 Aligned_cols=93 Identities=17% Similarity=0.314 Sum_probs=85.5
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
.+++||||+++ ..-.++|+||.+|+++|+.+++.|.++||..|.+.+++|++++|. .|||||||||++|||+|+
T Consensus 13 ~~~~Vvvf~Kg-~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-----~TVPQIFI~G~~IGG~dd 86 (115)
T PRK10824 13 AENPILLYMKG-SPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-----PTFPQLWVDGELVGGCDI 86 (115)
T ss_pred hcCCEEEEECC-CCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-----CCCCeEEECCEEEcChHH
Confidence 56899999875 334578999999999999999999999999999999999999987 999999999999999999
Q ss_pred HHhHHhhccHHHHhhcCCC
Q 024534 192 VRQLNETGELKKFVEGLPA 210 (266)
Q Consensus 192 l~~L~esGeL~~lL~~~~~ 210 (266)
+.+|+++|+|+++|+.+++
T Consensus 87 l~~l~~~G~L~~lL~~~~~ 105 (115)
T PRK10824 87 VIEMYQRGELQQLIKETAA 105 (115)
T ss_pred HHHHHHCCCHHHHHHHHHh
Confidence 9999999999999987665
No 6
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.88 E-value=3.7e-22 Score=157.33 Aligned_cols=88 Identities=17% Similarity=0.349 Sum_probs=80.9
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
.+++||||+++. .-+++||+|.+|+++|+.++|+|+++||..+++.+++|+++.|. .++|||||||++|||+||
T Consensus 10 ~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-----~tvP~vfi~g~~iGG~dd 83 (97)
T TIGR00365 10 KENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-----PTIPQLYVKGEFVGGCDI 83 (97)
T ss_pred ccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-----CCCCEEEECCEEEeChHH
Confidence 568999998742 33568999999999999999999999999999999999999987 899999999999999999
Q ss_pred HHhHHhhccHHHHh
Q 024534 192 VRQLNETGELKKFV 205 (266)
Q Consensus 192 l~~L~esGeL~~lL 205 (266)
+.+|+++|+|.++|
T Consensus 84 l~~l~~~g~L~~~l 97 (97)
T TIGR00365 84 IMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHCcChHHhC
Confidence 99999999999986
No 7
>PHA03050 glutaredoxin; Provisional
Probab=99.87 E-value=1.1e-21 Score=158.06 Aligned_cols=89 Identities=22% Similarity=0.475 Sum_probs=82.6
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCC---cEEEEECCC---CHHHHHHHHHHHCCCCCCCCCccEEEeCCEE
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRV---QLDERDLSM---DSSFLNELQGILGGGGQSKLTLPRVFIGGRY 185 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV---~~eErDVs~---d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~ 185 (266)
.+++|+||+++ +||||.+|+++|+.++| .|+++||+. +.+.+++|.++.|. .+||+|||||++
T Consensus 11 ~~~~V~vys~~------~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-----~tVP~IfI~g~~ 79 (108)
T PHA03050 11 ANNKVTIFVKF------TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-----RTVPRIFFGKTS 79 (108)
T ss_pred ccCCEEEEECC------CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-----CCcCEEEECCEE
Confidence 45789999987 99999999999999999 799999986 56789999999987 899999999999
Q ss_pred EcchhHHHhHHhhccHHHHhhcCCCC
Q 024534 186 IGGVEEVRQLNETGELKKFVEGLPAA 211 (266)
Q Consensus 186 IGG~del~~L~esGeL~~lL~~~~~~ 211 (266)
|||+||+++|+++|+|.++|+.+++.
T Consensus 80 iGG~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 80 IGGYSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred EeChHHHHHHHHcCCHHHHHHHcccc
Confidence 99999999999999999999998765
No 8
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.85 E-value=5e-21 Score=148.28 Aligned_cols=85 Identities=22% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
.+++||||+++ ....++|++|.+|+++|+.++++|+++||..|.+.+++|.++.|. .++|+|||||++|||+++
T Consensus 6 ~~~~vvvf~k~-~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-----~tvP~vfi~g~~iGG~~~ 79 (90)
T cd03028 6 KENPVVLFMKG-TPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-----PTFPQLYVNGELVGGCDI 79 (90)
T ss_pred ccCCEEEEEcC-CCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-----CCCCEEEECCEEEeCHHH
Confidence 45899999874 334569999999999999999999999999999999999999987 899999999999999999
Q ss_pred HHhHHhhccHH
Q 024534 192 VRQLNETGELK 202 (266)
Q Consensus 192 l~~L~esGeL~ 202 (266)
+++||++|+|+
T Consensus 80 l~~l~~~g~L~ 90 (90)
T cd03028 80 VKEMHESGELQ 90 (90)
T ss_pred HHHHHHcCCcC
Confidence 99999999984
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.84 E-value=1.6e-20 Score=140.24 Aligned_cols=79 Identities=24% Similarity=0.483 Sum_probs=75.3
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L 195 (266)
|+||+++ +|++|.+|+++|++++|.|+++||+++++.++++.++.|. .++|+|||||++|||++++.+|
T Consensus 1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-----~~vP~i~i~g~~igg~~~~~~~ 69 (79)
T TIGR02181 1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-----RTVPQIFIGDVHVGGCDDLYAL 69 (79)
T ss_pred CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-----CCcCEEEECCEEEcChHHHHHH
Confidence 6899976 9999999999999999999999999999999999998886 9999999999999999999999
Q ss_pred HhhccHHHHh
Q 024534 196 NETGELKKFV 205 (266)
Q Consensus 196 ~esGeL~~lL 205 (266)
+++|+|+++|
T Consensus 70 ~~~g~l~~~l 79 (79)
T TIGR02181 70 DREGKLDPLL 79 (79)
T ss_pred HHcCChhhhC
Confidence 9999999986
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.83 E-value=6e-20 Score=139.42 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=77.4
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
.+|+||+++ +|++|.+|+.+|+.+++.|+++||+.+.+.++++.++.|. .++|+|||||++|||++++.
T Consensus 2 ~~v~ly~~~------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-----~~vP~i~~~g~~igG~~~~~ 70 (83)
T PRK10638 2 ANVEIYTKA------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-----TTVPQIFIDAQHIGGCDDLY 70 (83)
T ss_pred CcEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-----CCcCEEEECCEEEeCHHHHH
Confidence 369999976 9999999999999999999999999998888999999887 89999999999999999999
Q ss_pred hHHhhccHHHHhh
Q 024534 194 QLNETGELKKFVE 206 (266)
Q Consensus 194 ~L~esGeL~~lL~ 206 (266)
+++++|+|.++|+
T Consensus 71 ~~~~~g~l~~~~~ 83 (83)
T PRK10638 71 ALDARGGLDPLLK 83 (83)
T ss_pred HHHHcCCHHHHhC
Confidence 9999999999985
No 11
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.79 E-value=9.1e-19 Score=128.72 Aligned_cols=75 Identities=28% Similarity=0.539 Sum_probs=69.5
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
+|+||+++ +|++|.+|+++|++++|+|+++||+++.+.+++|.++.|. ..++|+|||||++|||++++++
T Consensus 1 ~i~ly~~~------~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~----~~~vP~v~i~g~~igg~~~~~~ 70 (75)
T cd03418 1 KVEIYTKP------NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG----RRTVPQIFIGDVHIGGCDDLYA 70 (75)
T ss_pred CEEEEeCC------CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC----CCccCEEEECCEEEeChHHHHH
Confidence 58999976 9999999999999999999999999998888999988886 2399999999999999999999
Q ss_pred HHhhc
Q 024534 195 LNETG 199 (266)
Q Consensus 195 L~esG 199 (266)
|+++|
T Consensus 71 ~~~~g 75 (75)
T cd03418 71 LERKG 75 (75)
T ss_pred HHhCc
Confidence 99987
No 12
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.79 E-value=8e-19 Score=129.84 Aligned_cols=73 Identities=29% Similarity=0.504 Sum_probs=69.0
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
++|+||+++ +|++|++|+++|+.++|+|+++||.++...+++|++++|. .++|+|||||++|||++|+.
T Consensus 1 ~~v~ly~~~------~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-----~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 1 GRVTIYSRL------GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-----SVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred CEEEEEecC------CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-----CCcCEEEECCEEEeCHHHHH
Confidence 479999977 9999999999999999999999999999999999999987 89999999999999999999
Q ss_pred hHHh
Q 024534 194 QLNE 197 (266)
Q Consensus 194 ~L~e 197 (266)
+|+|
T Consensus 70 ~~~~ 73 (73)
T cd03027 70 SLEE 73 (73)
T ss_pred hhcC
Confidence 9875
No 13
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=9e-19 Score=140.84 Aligned_cols=88 Identities=30% Similarity=0.566 Sum_probs=76.4
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcc
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMD---SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGG 188 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d---~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG 188 (266)
.+++||||+++ +|++|.++|.+|..+++.+..++++.+ .+++++|.++.|. .|||+|||+|++|||
T Consensus 12 ~~~~VVifSKs------~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-----~tvP~vFI~Gk~iGG 80 (104)
T KOG1752|consen 12 SENPVVIFSKS------SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-----RTVPNVFIGGKFIGG 80 (104)
T ss_pred hcCCEEEEECC------cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-----CCCCEEEECCEEEcC
Confidence 56899999987 999999999999999998766666554 3566677766665 899999999999999
Q ss_pred hhHHHhHHhhccHHHHhhcCCC
Q 024534 189 VEEVRQLNETGELKKFVEGLPA 210 (266)
Q Consensus 189 ~del~~L~esGeL~~lL~~~~~ 210 (266)
.+++++||++|+|.++|+.+++
T Consensus 81 ~~dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 81 ASDLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred HHHHHHHHHcCCHHHHHHHhhc
Confidence 9999999999999999988664
No 14
>PTZ00062 glutaredoxin; Provisional
Probab=99.78 E-value=9.5e-19 Score=155.46 Aligned_cols=91 Identities=19% Similarity=0.346 Sum_probs=82.7
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchh
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVE 190 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~d 190 (266)
-.+++|+||.++ +...++|++|++++++|+.++|+|+++||..|.+.+++|+++.|. .|+|||||||++|||+|
T Consensus 110 i~~~~Vvvf~Kg-~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-----~TvPqVfI~G~~IGG~d 183 (204)
T PTZ00062 110 IRNHKILLFMKG-SKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-----PTYPQLYVNGELIGGHD 183 (204)
T ss_pred HhcCCEEEEEcc-CCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-----CCCCeEEECCEEEcChH
Confidence 456899999974 223468999999999999999999999999999999999999887 99999999999999999
Q ss_pred HHHhHHhhccHHHHhhc
Q 024534 191 EVRQLNETGELKKFVEG 207 (266)
Q Consensus 191 el~~L~esGeL~~lL~~ 207 (266)
++++|+++|+|+++|..
T Consensus 184 ~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 184 IIKELYESNSLRKVIPD 200 (204)
T ss_pred HHHHHHHcCChhhhhhh
Confidence 99999999999999854
No 15
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.74 E-value=1.2e-17 Score=124.36 Aligned_cols=79 Identities=32% Similarity=0.571 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCc--EEEEECCCC---HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchh
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQ--LDERDLSMD---SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVE 190 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~--~eErDVs~d---~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~d 190 (266)
|++|+++ +|++|.+++.+|+++++. |+.+||+.+ ...+++|.++.|. .++|+|||||++|||++
T Consensus 1 V~~f~~~------~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-----~~vP~v~i~g~~igg~~ 69 (84)
T TIGR02180 1 VVVFSKS------YCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-----RTVPNIFINGKFIGGCS 69 (84)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-----CCCCeEEECCEEEcCHH
Confidence 6899976 999999999999999998 888888754 4556778888776 89999999999999999
Q ss_pred HHHhHHhhccHHHHh
Q 024534 191 EVRQLNETGELKKFV 205 (266)
Q Consensus 191 el~~L~esGeL~~lL 205 (266)
++.+|+++|+|.++|
T Consensus 70 ~~~~~~~~g~l~~~~ 84 (84)
T TIGR02180 70 DLLALYKSGKLAELL 84 (84)
T ss_pred HHHHHHHcCChhhhC
Confidence 999999999999886
No 16
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.72 E-value=3.1e-17 Score=122.05 Aligned_cols=79 Identities=35% Similarity=0.621 Sum_probs=70.4
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMD---SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d---~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
+|++|++. +||+|.+++++|+.+++.|+++|++.+ .+.++++++++|. .++|+|||+|++|||+++
T Consensus 1 ~v~~y~~~------~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-----~~~P~v~~~g~~igg~~~ 69 (82)
T cd03419 1 PVVVFSKS------YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-----RTVPNVFIGGKFIGGCDD 69 (82)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-----CCCCeEEECCEEEcCHHH
Confidence 58999966 999999999999999999988887765 4457788888886 899999999999999999
Q ss_pred HHhHHhhccHHHH
Q 024534 192 VRQLNETGELKKF 204 (266)
Q Consensus 192 l~~L~esGeL~~l 204 (266)
+.+|.++|+|+++
T Consensus 70 ~~~~~~~g~l~~~ 82 (82)
T cd03419 70 LMALHKSGKLVKL 82 (82)
T ss_pred HHHHHHcCCccCC
Confidence 9999999999764
No 17
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.3e-17 Score=124.54 Aligned_cols=76 Identities=28% Similarity=0.516 Sum_probs=66.6
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEV 192 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del 192 (266)
.|+||+++ +||||.++|++|+.+|+.|+++|+.++. +.++.+++..|. .++|||||||++|||.+++
T Consensus 2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-----~tvP~I~i~~~~igg~~d~ 70 (80)
T COG0695 2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-----RTVPQIFIGGKHVGGCDDL 70 (80)
T ss_pred CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-----CCcCEEEECCEEEeCcccH
Confidence 58999976 9999999999999999999999999987 444555554465 9999999999999999999
Q ss_pred HhHHhhccH
Q 024534 193 RQLNETGEL 201 (266)
Q Consensus 193 ~~L~esGeL 201 (266)
.+++..|.|
T Consensus 71 ~~~~~~~~l 79 (80)
T COG0695 71 DALEAKGKL 79 (80)
T ss_pred HHHHhhccC
Confidence 999988876
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.70 E-value=1.1e-16 Score=117.99 Aligned_cols=70 Identities=24% Similarity=0.475 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
+|+||+++ +|++|.+||++|++++|+|+++||+.+.. .++++++.|. .++|+|||||++|||++|+.+
T Consensus 2 ~v~lys~~------~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~-----~~vP~ifi~g~~igg~~~l~~ 69 (72)
T cd03029 2 SVSLFTKP------GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGA-----MTVPQVFIDGELIGGSDDLEK 69 (72)
T ss_pred eEEEEECC------CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCC-----CCcCeEEECCEEEeCHHHHHH
Confidence 69999976 99999999999999999999999998874 4677777776 899999999999999999987
Q ss_pred HH
Q 024534 195 LN 196 (266)
Q Consensus 195 L~ 196 (266)
+.
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 64
No 19
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.5e-17 Score=128.00 Aligned_cols=92 Identities=20% Similarity=0.346 Sum_probs=85.0
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcch
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFR-VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGV 189 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g-V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~ 189 (266)
.++++||||.+. +.-.+.|.+..++-.||..+| +.|..+||-.|+++|+.|++.... .|+||+||+|++|||.
T Consensus 12 i~~n~VvLFMKG-tp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-----PT~PQLyi~GEfvGG~ 85 (105)
T COG0278 12 IKENPVVLFMKG-TPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-----PTFPQLYVNGEFVGGC 85 (105)
T ss_pred hhcCceEEEecC-CCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-----CCCceeeECCEEeccH
Confidence 357899999987 566778999999999999999 899999999999999999998875 9999999999999999
Q ss_pred hHHHhHHhhccHHHHhhcC
Q 024534 190 EEVRQLNETGELKKFVEGL 208 (266)
Q Consensus 190 del~~L~esGeL~~lL~~~ 208 (266)
|-+.+|+++|+|+++|+..
T Consensus 86 DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 86 DIVREMYQSGELQTLLKEA 104 (105)
T ss_pred HHHHHHHHcchHHHHHHhc
Confidence 9999999999999999764
No 20
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.69 E-value=2e-16 Score=119.25 Aligned_cols=73 Identities=29% Similarity=0.510 Sum_probs=64.9
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchh
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVE 190 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~d 190 (266)
..+++|+||+++ +|++|.+||++|+.+||+|+++||+.+... +++.++.|. .++|+|||||++|||++
T Consensus 5 ~~~~~V~ly~~~------~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~-----~~vP~i~i~g~~igG~~ 72 (79)
T TIGR02190 5 RKPESVVVFTKP------GCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGA-----TTVPQVFIGGKLIGGSD 72 (79)
T ss_pred CCCCCEEEEECC------CCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCC-----CCcCeEEECCEEEcCHH
Confidence 366899999976 999999999999999999999999887554 577777776 99999999999999999
Q ss_pred HHHhH
Q 024534 191 EVRQL 195 (266)
Q Consensus 191 el~~L 195 (266)
+|.++
T Consensus 73 ~l~~~ 77 (79)
T TIGR02190 73 ELEAY 77 (79)
T ss_pred HHHHH
Confidence 99875
No 21
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.69 E-value=2.5e-16 Score=112.05 Aligned_cols=72 Identities=33% Similarity=0.672 Sum_probs=67.8
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
+|+||++. +|++|++++.+|+.+++.|+++|+..+.+.+++|+++.|. .++|+||+||++|||++++++
T Consensus 1 ~v~ly~~~------~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-----~~~P~~~~~~~~igg~~~~~~ 69 (72)
T cd02066 1 KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-----PTVPQIFINGEFIGGYDDLKA 69 (72)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-----CCcCEEEECCEEEecHHHHHH
Confidence 58999976 9999999999999999999999999998888999999887 999999999999999999999
Q ss_pred HHh
Q 024534 195 LNE 197 (266)
Q Consensus 195 L~e 197 (266)
|++
T Consensus 70 ~~~ 72 (72)
T cd02066 70 LHE 72 (72)
T ss_pred hhC
Confidence 874
No 22
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.67 E-value=3.4e-16 Score=120.27 Aligned_cols=75 Identities=17% Similarity=0.366 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCC-----CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchh
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFR-----VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVE 190 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~g-----V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~d 190 (266)
|+||+++ +|++|.+|+++|+.++ +.|+++||..+...+++|.++.|. ...++|+|||||++|||++
T Consensus 2 V~vys~~------~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~---~~~tVP~ifi~g~~igG~~ 72 (86)
T TIGR02183 2 VVIFGRP------GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGK---PVETVPQIFVDEKHVGGCT 72 (86)
T ss_pred EEEEeCC------CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCC---CCCCcCeEEECCEEecCHH
Confidence 7899976 9999999999999984 679999998776667889888874 3479999999999999999
Q ss_pred HHHhHHhhc
Q 024534 191 EVRQLNETG 199 (266)
Q Consensus 191 el~~L~esG 199 (266)
||.++++++
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 999998764
No 23
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.67 E-value=5.5e-16 Score=117.92 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=67.3
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcch
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRG-----FRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGV 189 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~-----~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~ 189 (266)
+|+||+++ +|++|.+|+++|+. .++.|+++||..+...+++|.++.+. ...++|+|||||++|||+
T Consensus 2 ~v~iy~~~------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~---~~~~vP~ifi~g~~igg~ 72 (85)
T PRK11200 2 FVVIFGRP------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK---PVETVPQIFVDQKHIGGC 72 (85)
T ss_pred EEEEEeCC------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC---CCCcCCEEEECCEEEcCH
Confidence 68999976 99999999999999 79999999999887677899988875 347999999999999999
Q ss_pred hHHHhHHhh
Q 024534 190 EEVRQLNET 198 (266)
Q Consensus 190 del~~L~es 198 (266)
+|+.++++.
T Consensus 73 ~~~~~~~~~ 81 (85)
T PRK11200 73 TDFEAYVKE 81 (85)
T ss_pred HHHHHHHHH
Confidence 999998764
No 24
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.66 E-value=3.4e-16 Score=124.89 Aligned_cols=92 Identities=28% Similarity=0.466 Sum_probs=74.8
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHC----CCCCCCCCccEEEeCCEEEcchh
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILG----GGGQSKLTLPRVFIGGRYIGGVE 190 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg----~~~~~~~tvPqVFI~G~~IGG~d 190 (266)
.|.||+||++|.++.-..++++..||+.++|+|+++||++|.+.|+.+++..| ..+.+..-+||||+||+|+|+||
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 48899999999999999999999999999999999999999999999999985 11223456689999999999999
Q ss_pred HHHhHHhhccHHHHhh
Q 024534 191 EVRQLNETGELKKFVE 206 (266)
Q Consensus 191 el~~L~esGeL~~lL~ 206 (266)
++.+++|+|+|.++|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999995
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.59 E-value=6.3e-15 Score=105.05 Aligned_cols=60 Identities=33% Similarity=0.546 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEE
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYI 186 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~I 186 (266)
|+||++. +|++|.+++++|+++|++|+++||+.|.+.+++|+++.|. .++|+|||||++|
T Consensus 1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-----~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-----RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-----SSSSEEEETTEEE
T ss_pred cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-----CccCEEEECCEEC
Confidence 7899965 9999999999999999999999999999999999999986 9999999999987
No 26
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.54 E-value=2.4e-14 Score=138.57 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=72.8
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC----CCCCCCCccEEEeCCEEEcch
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG----GGQSKLTLPRVFIGGRYIGGV 189 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~----~~~~~~tvPqVFI~G~~IGG~ 189 (266)
.+|+||+++ +||+|.++|++|+.+||+|+++||+.|+...+ +.+.++. ...+..+||||||||++|||+
T Consensus 2 ~~V~vys~~------~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~-~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf 74 (410)
T PRK12759 2 VEVRIYTKT------NCPFCDLAKSWFGANDIPFTQISLDDDVKRAE-FYAEVNKNILLVEEHIRTVPQIFVGDVHIGGY 74 (410)
T ss_pred CcEEEEeCC------CCHHHHHHHHHHHHCCCCeEEEECCCChhHHH-HHHHHhhccccccCCCCccCeEEECCEEEeCc
Confidence 479999988 99999999999999999999999998765433 3322221 012348999999999999999
Q ss_pred hHHHhHHhhccHHHHhhcCCCC
Q 024534 190 EEVRQLNETGELKKFVEGLPAA 211 (266)
Q Consensus 190 del~~L~esGeL~~lL~~~~~~ 211 (266)
+++.+ .+|+|.++|++.+..
T Consensus 75 ~~l~~--~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 75 DNLMA--RAGEVIARVKGSSLT 94 (410)
T ss_pred hHHHH--HhCCHHHHhcCCccc
Confidence 99987 889999999987654
No 27
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.9e-14 Score=127.91 Aligned_cols=92 Identities=18% Similarity=0.343 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcch
Q 024534 110 PGADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGV 189 (266)
Q Consensus 110 p~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~ 189 (266)
.+..++|+||.++ ..-.+.|.+.+++..||+.++|.|...||..|.+.|+-|++.... .|+|||||+|++|||.
T Consensus 135 lv~a~~v~lFmKG-~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-----PTfPQlyI~GEFiGGl 208 (227)
T KOG0911|consen 135 LVKAKPVMLFMKG-TPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-----PTFPQLYVKGEFIGGL 208 (227)
T ss_pred hcccCeEEEEecC-CCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-----CCccceeECCEeccCc
Confidence 4567899999886 445677999999999999999999999999999999999998765 9999999999999999
Q ss_pred hHHHhHHhhccHHHHhhc
Q 024534 190 EEVRQLNETGELKKFVEG 207 (266)
Q Consensus 190 del~~L~esGeL~~lL~~ 207 (266)
|-+.+||++|+|...|++
T Consensus 209 DIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 209 DILKEMHEKGELVYTLKE 226 (227)
T ss_pred HHHHHHhhcccHHHHhhc
Confidence 999999999999999975
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.43 E-value=4.7e-13 Score=98.95 Aligned_cols=63 Identities=16% Similarity=0.343 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCE-EEcchh
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGR-YIGGVE 190 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~-~IGG~d 190 (266)
|+||++. +|++|++++++|++++|.|+++||..|+..++++++. |. .++|+|||+|+ ++||++
T Consensus 1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~-----~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GF-----RQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CC-----cccCEEEECCCcEEeccC
Confidence 6799966 9999999999999999999999999999888888763 65 89999999775 999997
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.39 E-value=1.8e-12 Score=99.12 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchh
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVE 190 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~d 190 (266)
+|+||++. +|++|.++|.+|+++||.|+++||+.|++..++++. .|. .++|+|+|+|+.++|++
T Consensus 2 ~v~lYt~~------~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~-----~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRN------DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGF-----RQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCC------CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCC-----CCcCEEEECCEEEecCC
Confidence 69999976 999999999999999999999999999888888876 365 89999999999999996
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.19 E-value=1.8e-10 Score=82.22 Aligned_cols=66 Identities=29% Similarity=0.452 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
+|+||+.+ +|++|++++.+|+.+++.|+++|++.+....+++.++.|. .++|.|+++|+.++|++.
T Consensus 1 ~i~lf~~~------~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-----~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTP------WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-----RGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCC------CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-----CcccEEEECCEEEeeCCH
Confidence 48899976 9999999999999999999999999888888888888886 899999999999988753
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.13 E-value=4e-10 Score=80.40 Aligned_cols=66 Identities=29% Similarity=0.455 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
.|++|+.. +|++|.+++.+|+.++++|..+|++.+....+++.++.+. .++|.|+++|+.|+|++.
T Consensus 1 ~v~l~~~~------~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-----~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKP------DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-----RSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCC------CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-----cccCEEEECCEEEecCCH
Confidence 47899866 9999999999999999999999999888888888887765 899999999999999874
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.96 E-value=5.4e-09 Score=76.11 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=55.5
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHH-CCCCCCCCCccEEEe-CCEEEcchh
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGIL-GGGGQSKLTLPRVFI-GGRYIGGVE 190 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ell-g~~~~~~~tvPqVFI-~G~~IGG~d 190 (266)
+|+||+++ +|++|++++.+|+.+++.|+.+|++.+....++++++. +. .++|+|++ ||+.+....
T Consensus 1 ~v~ly~~~------~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-----~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTT------WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-----MTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECC------CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-----ceeCEEEECCCeEecCCC
Confidence 48999977 99999999999999999999999998887778888875 54 89999976 667776554
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.78 E-value=1.7e-08 Score=72.65 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEc
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIG 187 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IG 187 (266)
+|++|+++ +|++|.+++.+|+.+ ++.|.++|++.+ .++.+.+|. .++|+|+|+|++++
T Consensus 2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~----~~l~~~~~i-----~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSP------TCPYCPDAVQAANRIAALNPNISAEMIDAAEF----PDLADEYGV-----MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECC------CCCCcHHHHHHHHHHHHhCCceEEEEEEcccC----HhHHHHcCC-----cccCEEEECCEEEE
Confidence 58899976 999999999999976 688999999766 346666775 78999999999886
No 34
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.2e-07 Score=75.91 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=82.1
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC---CCCCCCCccEEEeCCEEEcchhH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG---GGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~---~~~~~~tvPqVFI~G~~IGG~de 191 (266)
.|.+|++|.+|....-..-.++..+|+...|.|+++||.+....+.++...+.. .-.+....||||-+++|.|+||.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 488999999999888888899999999999999999999887776666555432 12345799999999999999999
Q ss_pred HHhHHhhccHHHHhhcCCCC
Q 024534 192 VRQLNETGELKKFVEGLPAA 211 (266)
Q Consensus 192 l~~L~esGeL~~lL~~~~~~ 211 (266)
+.+..|+..|.++|.-++..
T Consensus 83 F~ea~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLAPPP 102 (108)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 99999999999999876653
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.54 E-value=6.5e-07 Score=66.70 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe--CCEEEcchhHHH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI--GGRYIGGVEEVR 193 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI--~G~~IGG~del~ 193 (266)
++||+.+ .|++|.+|+.+|+.+||+|+++||..+....+++.++.+. .++|.+.. +|..+.+...+.
T Consensus 2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-----~~vP~l~~~~~~~~l~es~~I~ 70 (77)
T cd03041 2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-----VQVPYLVDPNTGVQMFESADIV 70 (77)
T ss_pred ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-----CcccEEEeCCCCeEEEcHHHHH
Confidence 6789866 9999999999999999999999998765556788776554 89999976 356777666666
Q ss_pred hHH
Q 024534 194 QLN 196 (266)
Q Consensus 194 ~L~ 196 (266)
+..
T Consensus 71 ~yL 73 (77)
T cd03041 71 KYL 73 (77)
T ss_pred HHH
Confidence 543
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.46 E-value=1.8e-06 Score=63.64 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=52.9
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeC----CEEEcchh
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIG----GRYIGGVE 190 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~----G~~IGG~d 190 (266)
+|.||+.. .|++|++++.+|+.+||.|++++++. ..+.+++ ..+. .++|+++++ |+.|....
T Consensus 1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~~~-----~~vP~l~~~~~~~~~~l~eS~ 66 (77)
T cd03040 1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WSSY-----KKVPILRVESGGDGQQLVDSS 66 (77)
T ss_pred CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-HhCC-----CccCEEEECCCCCccEEEcHH
Confidence 57899976 99999999999999999999999854 3345553 3443 899999987 67777776
Q ss_pred HHHhHH
Q 024534 191 EVRQLN 196 (266)
Q Consensus 191 el~~L~ 196 (266)
.+.+..
T Consensus 67 ~I~~yL 72 (77)
T cd03040 67 VIISTL 72 (77)
T ss_pred HHHHHH
Confidence 666543
No 37
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.43 E-value=7e-07 Score=61.85 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=54.2
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhH
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L 195 (266)
.||+.. .|++|.+++.+|+.++++|+.++++.+.....++++..+. .++|.|+++|+.+++...+.+.
T Consensus 2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-----GKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-----CCCCEEEECCEEEEcHHHHHHH
Confidence 467754 8999999999999999999999987654333356665554 8999999999999988776553
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.39 E-value=1.9e-06 Score=62.66 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=53.0
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeC-CEEEcchhHHHhH
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIG-GRYIGGVEEVRQL 195 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~-G~~IGG~del~~L 195 (266)
.||+.. .|++|.++|.+|..+|+.|+++.++.+... .+ .+..+. .++|.|+++ |..+++...+.+.
T Consensus 2 ~Ly~~~------~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~~-~~~~~~-----~~vP~L~~~~~~~l~es~aI~~y 68 (71)
T cd03037 2 KLYIYE------HCPFCVKARMIAGLKNIPVEQIILQNDDEA-TP-IRMIGA-----KQVPILEKDDGSFMAESLDIVAF 68 (71)
T ss_pred ceEecC------CCcHhHHHHHHHHHcCCCeEEEECCCCchH-HH-HHhcCC-----CccCEEEeCCCeEeehHHHHHHH
Confidence 478765 999999999999999999999998765321 22 334443 789999997 8999998888765
Q ss_pred Hh
Q 024534 196 NE 197 (266)
Q Consensus 196 ~e 197 (266)
.+
T Consensus 69 L~ 70 (71)
T cd03037 69 ID 70 (71)
T ss_pred Hh
Confidence 43
No 39
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.28 E-value=5.5e-06 Score=63.49 Aligned_cols=73 Identities=8% Similarity=0.028 Sum_probs=57.4
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeC-CEEEcch
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIG-GRYIGGV 189 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~-G~~IGG~ 189 (266)
-..+.+.||+.. .|++|.+++.+|+.+|+.|++++++... ..+++.++... .++|.+.++ |..|...
T Consensus 14 ~~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~-----~~vPvL~~~~g~~l~eS 81 (89)
T cd03055 14 PVPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQ-----GKVPALEIDEGKVVYES 81 (89)
T ss_pred CCCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCC-----CCcCEEEECCCCEEECH
Confidence 345779999966 9999999999999999999999987643 23456666554 789999998 7887766
Q ss_pred hHHHhH
Q 024534 190 EEVRQL 195 (266)
Q Consensus 190 del~~L 195 (266)
..+.+.
T Consensus 82 ~aI~~y 87 (89)
T cd03055 82 LIICEY 87 (89)
T ss_pred HHHHHh
Confidence 666554
No 40
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.16 E-value=2.7e-06 Score=68.40 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|.||++. +|++|++|+++|+++|+.|+++|+..++..+++|.++++.
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 5799976 9999999999999999999999999998888899888775
No 41
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.15 E-value=1.1e-05 Score=58.22 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L 195 (266)
++||+.. +|++|.+++.+|+.+|++|++++++.+. ...++++.... .++|.+..+|..+.....+.+.
T Consensus 1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~-----~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPY-----GTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCC-----CCCCEEEECCEEEEcHHHHHHH
Confidence 4688866 9999999999999999999999887542 23566666544 7999998888777666555544
No 42
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.10 E-value=4.1e-06 Score=66.11 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|+||++. +|++|++|+++|+++||.|+++||..++...++|+++++.
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 5799976 9999999999999999999999999888778899988876
No 43
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.05 E-value=2.7e-05 Score=57.26 Aligned_cols=55 Identities=15% Similarity=0.359 Sum_probs=42.1
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHh----CC--CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCE
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRG----FR--VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGR 184 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~----~g--V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~ 184 (266)
.|+||+.+ +|++|+.++.+|+. ++ +.+..+|+..+. ++.+.+|- .++|.++++|+
T Consensus 2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~----~~~~~~~v-----~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSP------TCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP----QKAMEYGI-----MAVPAIVINGD 62 (82)
T ss_pred EEEEEECC------CCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH----HHHHHcCC-----ccCCEEEECCE
Confidence 47899866 99999999999874 34 567788887654 34444564 78999999997
No 44
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.98 E-value=2.9e-05 Score=57.38 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=57.0
Q ss_pred EEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhHHh
Q 024534 118 VYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNE 197 (266)
Q Consensus 118 IYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L~e 197 (266)
||... .|++|.+|+.+|+-+||.|+.++++.... .+++.++.+. .++|.+..||..|.+...+.+..+
T Consensus 1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~-----~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPK-----GKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTT-----SBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhccc-----ccceEEEECCEEEeCHHHHHHHHH
Confidence 56665 99999999999999999999999876543 5777777765 899999999999998888776543
No 45
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.98 E-value=3.3e-05 Score=56.23 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=51.0
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeC-CEEEcchhHHH
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIG-GRYIGGVEEVR 193 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~-G~~IGG~del~ 193 (266)
+||+.. .|++|.+++.+|+.+|+.|+.++++.... .+++.++... .++|.+..+ |..|.....+.
T Consensus 2 ~ly~~~------~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~-----~~vP~L~~~~g~~l~eS~aI~ 67 (71)
T cd03060 2 ILYSFR------RCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPK-----GTVPVLVLGNGTVIEESLDIM 67 (71)
T ss_pred EEEecC------CCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCC-----CCCCEEEECCCcEEecHHHHH
Confidence 688865 99999999999999999999998876422 3567666555 899999996 88776555444
No 46
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.96 E-value=2.3e-05 Score=56.23 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=49.7
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEe-CCEEEcchhHHH
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFI-GGRYIGGVEEVR 193 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI-~G~~IGG~del~ 193 (266)
.||+.. +|++|.+++.+|+.+++.|++++++... ...+++.++... .++|.+.+ ||..+.....+.
T Consensus 2 ~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-----~~vP~l~~~~~~~l~es~aI~ 70 (74)
T cd03051 2 KLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-----GTVPVLELDDGTVITESVAIC 70 (74)
T ss_pred EEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-----CCCCEEEeCCCCEEecHHHHH
Confidence 678865 8999999999999999999888876432 234566766654 89999997 556665554444
Q ss_pred h
Q 024534 194 Q 194 (266)
Q Consensus 194 ~ 194 (266)
+
T Consensus 71 ~ 71 (74)
T cd03051 71 R 71 (74)
T ss_pred H
Confidence 3
No 47
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.96 E-value=8.3e-05 Score=56.41 Aligned_cols=53 Identities=26% Similarity=0.483 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCC----CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFR----VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGG 183 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~g----V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G 183 (266)
+|++|++ ++|.-|..++.+|+... +.++++||+.|+ +|.++++ ..+|+++++|
T Consensus 1 ~l~l~~k------~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~----~l~~~Y~------~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTK------PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDP----ELFEKYG------YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTH----HHHHHSC------TSTSEEEETT
T ss_pred CEEEEcC------CCCChHHHHHHHHHHHHhhcCceEEEEECCCCH----HHHHHhc------CCCCEEEEcC
Confidence 4889995 49999999999999654 668999999774 4777777 5899999999
No 48
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.96 E-value=1.9e-05 Score=65.60 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|.||++. +|++|++|+++|+.+||.|+++|+..++..++||.+++..
T Consensus 2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHH
Confidence 7899976 9999999999999999999999999998888888887764
No 49
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.85 E-value=6.4e-05 Score=54.52 Aligned_cols=68 Identities=13% Similarity=0.236 Sum_probs=51.9
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMD--SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d--~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
+.||+.. .|++|.+++.+|+.+|+.|++++++.. ....+++.++... ..+|.+.++|..|.....+.
T Consensus 1 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-----~~vP~l~~~~~~l~es~aI~ 69 (74)
T cd03045 1 IDLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-----HTVPTLVDNGFVLWESHAIL 69 (74)
T ss_pred CEEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-----CCCCEEEECCEEEEcHHHHH
Confidence 3578865 999999999999999999999888742 2345677776554 79999988887766555544
Q ss_pred h
Q 024534 194 Q 194 (266)
Q Consensus 194 ~ 194 (266)
+
T Consensus 70 ~ 70 (74)
T cd03045 70 I 70 (74)
T ss_pred H
Confidence 4
No 50
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.84 E-value=4.1e-05 Score=61.88 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=42.5
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|.||+.. +|++|++|+++|+++||.|+++|+..++..+++|.+++..
T Consensus 1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~ 47 (117)
T TIGR01617 1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSL 47 (117)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHH
Confidence 5789876 9999999999999999999999999988888889888765
No 51
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.79 E-value=5.6e-05 Score=60.95 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|.||+.. +|+.|++|+++|+.+||.|+++|+..++..++||.+.+..
T Consensus 2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~ 48 (115)
T cd03032 2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSL 48 (115)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHH
Confidence 7899976 9999999999999999999999999888778888888764
No 52
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.75 E-value=0.00013 Score=52.45 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=51.3
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMD--SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d--~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
.+|+.. .|++|.+++.+|+.+|++|++++|+.. ....+++.++... .++|.+..+|..|.....+.+
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-----~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-----GEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-----CCCCEEEECCEEEEcHHHHHH
Confidence 578754 899999999999999999999998753 2234566665544 789999999988776555543
No 53
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.70 E-value=7.2e-05 Score=62.32 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=41.6
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|.||+.. +|+.|++|+++|+++||.|+++|+..++-.++||.+.+..
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~ 48 (132)
T PRK13344 2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTK 48 (132)
T ss_pred EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHH
Confidence 7899976 9999999999999999999999999887777787777654
No 54
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.69 E-value=7.6e-05 Score=62.12 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|+||+.. +|+.|++++++|+.+||.|+++|+..++-..+||.+.+..
T Consensus 2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 7899976 9999999999999999999999999888778888887754
No 55
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.66 E-value=7.6e-05 Score=59.78 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|+||+.. +|..|++|+++|+.+|+.|+++|+..++--.+||.+++..
T Consensus 1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 5799976 9999999999999999999999999988778888888765
No 56
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.62 E-value=0.00014 Score=56.52 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=47.4
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEc
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIG 187 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IG 187 (266)
-.|.+|++. +|++|..++.+++.+ ++.|+.+|++.. .++.+.++- ..+|.++|||+.++
T Consensus 14 v~i~~F~~~------~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~----~e~a~~~~V-----~~vPt~vidG~~~~ 77 (89)
T cd03026 14 INFETYVSL------SCHNCPDVVQALNLMAVLNPNIEHEMIDGALF----QDEVEERGI-----MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEEECC------CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC----HHHHHHcCC-----ccCCEEEECCEEEE
Confidence 368888876 999999999988866 688999998755 455556665 78999999998765
No 57
>PHA02125 thioredoxin-like protein
Probab=97.58 E-value=0.00033 Score=51.99 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=39.6
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEE
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYI 186 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~I 186 (266)
|++|+++ +|+.|+.++.+|++..+.+..+|++.+ .++.+.++- ..+|.+. +|+.+
T Consensus 2 iv~f~a~------wC~~Ck~~~~~l~~~~~~~~~vd~~~~----~~l~~~~~v-----~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAE------WCANCKMVKPMLANVEYTYVDVDTDEG----VELTAKHHI-----RSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECC------CCHhHHHHHHHHHHHhheEEeeeCCCC----HHHHHHcCC-----ceeCeEE-CCEEE
Confidence 6788876 999999999999876554444454333 466666765 8999876 77544
No 58
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.55 E-value=0.00014 Score=59.14 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=42.7
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
.|+||+.. .|..|++|+++|+.+|+.|+++|+..++--++||++.+..
T Consensus 1 ~i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~ 48 (113)
T cd03033 1 DIIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGD 48 (113)
T ss_pred CEEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHH
Confidence 37899976 9999999999999999999999999887777888888764
No 59
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.52 E-value=0.0005 Score=50.03 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=48.5
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhHHh
Q 024534 125 VVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNE 197 (266)
Q Consensus 125 gvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L~e 197 (266)
++...|++|.+++.+|+.+|++|++++++... +. ....+|.+.++|+.+.+...+.+..+
T Consensus 11 ~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~-----p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 11 GLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RS-----PTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cC-----CCcccCEEEECCEEEcCHHHHHHHHh
Confidence 34458999999999999999999999997532 22 24799999999999998887776543
No 60
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.35 E-value=0.0013 Score=47.98 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
+.+|... .|++|.+++.+|..+|++|+.+.++... ...+++.++... ..+|.+..+|..|.....+.
T Consensus 2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-----~~vP~l~~~g~~l~es~aI~ 70 (76)
T cd03053 2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-----GQIPALEDGDLKLFESRAIT 70 (76)
T ss_pred eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-----CCCCEEEECCEEEEcHHHHH
Confidence 5688754 8999999999999999999998887532 223456665554 88999988888777666665
Q ss_pred hHH
Q 024534 194 QLN 196 (266)
Q Consensus 194 ~L~ 196 (266)
+..
T Consensus 71 ~yL 73 (76)
T cd03053 71 RYL 73 (76)
T ss_pred HHH
Confidence 543
No 61
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.33 E-value=0.0025 Score=50.18 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=56.0
Q ss_pred cEEEEEEcCCCC--CCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHH
Q 024534 115 RVVVYFTSLRVV--RSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEV 192 (266)
Q Consensus 115 kVVIYttSLrgv--R~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del 192 (266)
.|.+|.+.-++. ...|++|++++.+|..+||.|+..+|+++.. -+.+.++.-. ..+|.+..+|..|..-+.+
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~-----g~vPvL~~~~~~i~eS~~I 78 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPG-----TQPPFLLYNGEVKTDNNKI 78 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCC-----CCCCEEEECCEEecCHHHH
Confidence 466776654332 4579999999999999999999988876532 1445565544 7899998888888777666
Q ss_pred HhHH
Q 024534 193 RQLN 196 (266)
Q Consensus 193 ~~L~ 196 (266)
.+..
T Consensus 79 ~eYL 82 (91)
T cd03061 79 EEFL 82 (91)
T ss_pred HHHH
Confidence 6543
No 62
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.29 E-value=0.0019 Score=48.24 Aligned_cols=47 Identities=17% Similarity=0.414 Sum_probs=35.8
Q ss_pred CChHHHHHHH----HHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEE
Q 024534 129 TFEDCKAVRS----ILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRY 185 (266)
Q Consensus 129 tC~~C~~vk~----iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~ 185 (266)
+|++|.++.+ ++..+++.++.+|+. | .+++ ..+|- .++|.++|||+.
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~ygv-----~~vPalvIng~~ 59 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKYGV-----MSVPALVINGKV 59 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHTT------SSSSEEEETTEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHcCC-----CCCCEEEECCEE
Confidence 8999997666 555778999999983 3 2455 66665 899999999974
No 63
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.29 E-value=0.0014 Score=47.73 Aligned_cols=69 Identities=13% Similarity=-0.046 Sum_probs=48.8
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L 195 (266)
+.+|+.. .|++|.+++.+|+.+|++|++++++.. ....+++++... ..++|.+..+|.-+.....+.+.
T Consensus 1 ~~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~----~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPV----HKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECC------CCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCC----CCCCCEEEECCEEeehHHHHHHH
Confidence 3577754 899999999999999999999887653 112344444321 26899998888776665555443
No 64
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.29 E-value=0.00099 Score=49.34 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
+++|... .++.|.+|+.+|+.+|++|+.++++... ...+++.++... .++|.+..||..|.....+.
T Consensus 1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-----g~vP~L~~~g~~l~Es~aI~ 69 (73)
T cd03052 1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-----GEVPVLIHGDNIICDPTQII 69 (73)
T ss_pred CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-----CCCCEEEECCEEEEcHHHHH
Confidence 4678755 8999999999999999999998886532 223567777665 89999998888777665554
Q ss_pred h
Q 024534 194 Q 194 (266)
Q Consensus 194 ~ 194 (266)
+
T Consensus 70 ~ 70 (73)
T cd03052 70 D 70 (73)
T ss_pred H
Confidence 4
No 65
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.27 E-value=0.00099 Score=49.79 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=41.0
Q ss_pred EEEEEEcCCCCCCCChHHHHH----HHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEE
Q 024534 116 VVVYFTSLRVVRSTFEDCKAV----RSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYI 186 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~v----k~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~I 186 (266)
|.+|+ + +|+.|+.+ +++++++++.++.++|+.. +++.+ +|- .++|.|+|||+.+
T Consensus 3 i~~~a-~------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~----~~a~~-~~v-----~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-T------GCANCQMTEKNVKKAVEELGIDAEFEKVTDM----NEILE-AGV-----TATPGVAVDGELV 60 (76)
T ss_pred EEEEC-C------CCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH----HHHHH-cCC-----CcCCEEEECCEEE
Confidence 66776 5 99999999 6688888999999999731 23322 444 8999999999765
No 66
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.17 E-value=0.0015 Score=61.65 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=64.4
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
.+-++++|.-. |||+|.+||++|+=+++.|..+.| |+-.|+|++= .....||.+.|+|+.+-.-.-
T Consensus 87 s~L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk~------SsykKVPil~~~Geqm~dSsv 152 (370)
T KOG3029|consen 87 SPLDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIKW------SSYKKVPILLIRGEQMVDSSV 152 (370)
T ss_pred CCceEEEEeec------cCchHHHHHHHHhhcCCceEEEEe--cchhhhhccc------cccccccEEEeccceechhHH
Confidence 34589999865 999999999999999999999888 4555555532 235889999999987666655
Q ss_pred HHhHH------hhccHHHHhhcCCCC
Q 024534 192 VRQLN------ETGELKKFVEGLPAA 211 (266)
Q Consensus 192 l~~L~------esGeL~~lL~~~~~~ 211 (266)
+..+. ..-.|.++.+..|+.
T Consensus 153 IIs~laTyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 153 IISLLATYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred HHHHHHHHhccCCCCHHHHHHhcccc
Confidence 55443 345677777777754
No 67
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.17 E-value=0.002 Score=51.59 Aligned_cols=54 Identities=19% Similarity=0.375 Sum_probs=41.7
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCC-----CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFR-----VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g-----V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
..|+||++ ..+|++|+.++.+|+.+. +.|..+|++.+ .++.+.++- .++|.++|
T Consensus 23 ~~vvv~f~-----a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~----~~l~~~~~v-----~~vPt~~i 81 (113)
T cd02975 23 VDLVVFSS-----KEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED----KEKAEKYGV-----ERVPTTIF 81 (113)
T ss_pred eEEEEEeC-----CCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC----HHHHHHcCC-----CcCCEEEE
Confidence 45777754 359999999999998664 56888998765 356667775 89999988
No 68
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.15 E-value=0.0016 Score=46.77 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=49.2
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
.+|+.. .++.|.+++.+|+.+|++|+.+.+++.. ...+++.+.... ..+|.+..+|..+.....+.+
T Consensus 2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-----~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-----GLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-----CCCCEEEECCEEEEcHHHHHH
Confidence 466543 7889999999999999999998887532 223566665544 899999988887765555444
No 69
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.13 E-value=0.0029 Score=46.42 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=50.9
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L 195 (266)
+.+|... .++.|.+++.+|..+|++|+.+.++.+ ...+++.++.. ..++|.+..+|..|.....+.+.
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p-----~~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 2 YTLTYFP------VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKML-----FGQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred cEEEEeC------CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCC-----CCCCCEEEECCEEEEcHHHHHHH
Confidence 5677754 689999999999999999999988752 33344444333 37899999998888766666554
No 70
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.04 E-value=0.0043 Score=51.46 Aligned_cols=47 Identities=11% Similarity=0.231 Sum_probs=39.4
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILG 167 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg 167 (266)
.|.||... .|.-|++++++|+.+||.|+++|+..++--++||++.+.
T Consensus 2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 37899865 999999999999999999999999877655666666654
No 71
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.03 E-value=0.0024 Score=46.31 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=47.8
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe-CCEEEcchhHHH
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRG--FRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI-GGRYIGGVEEVR 193 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~--~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI-~G~~IGG~del~ 193 (266)
.+|+.. .|++|.+++.+|.. ++++|+++.++.. ....++.+.... .++|.+.. ||..|.....+.
T Consensus 2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~-----~~vP~l~~~~g~~l~es~aI~ 69 (73)
T cd03049 2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPL-----GKIPALVLDDGEALFDSRVIC 69 (73)
T ss_pred EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCC-----CCCCEEEECCCCEEECHHHHH
Confidence 567654 89999999999999 8999999988642 223455555444 88999975 677766555544
Q ss_pred h
Q 024534 194 Q 194 (266)
Q Consensus 194 ~ 194 (266)
+
T Consensus 70 ~ 70 (73)
T cd03049 70 E 70 (73)
T ss_pred h
Confidence 3
No 72
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.00 E-value=0.0032 Score=45.59 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=47.5
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
+||... .++.|.+++.+|+.+|++|+.++++.......++.+.. ...++|.+..+|..|.....+.+
T Consensus 2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~-----p~~~vP~L~~~~~~l~es~aI~~ 68 (72)
T cd03039 2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL-----PFGQLPVLEIDGKKLTQSNAILR 68 (72)
T ss_pred EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC-----cCCCCCEEEECCEEEEecHHHHH
Confidence 567643 78999999999999999999998865322222233322 35899999988887776555544
No 73
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.98 E-value=0.0029 Score=51.69 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=43.4
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHH----hCCCcEEEEECCCCH--H-----HHHHHHHHHCCCCCCCCCccEE--E
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILR----GFRVQLDERDLSMDS--S-----FLNELQGILGGGGQSKLTLPRV--F 180 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~----~~gV~~eErDVs~d~--~-----~r~EL~ellg~~~~~~~tvPqV--F 180 (266)
..++||+. +.||++|+.+.-+|+ ..++.+..+|++.+. + -..++.+..+. ..+...+|.+ |
T Consensus 24 ~~~iv~f~-----~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i-~~~i~~~PT~v~~ 97 (122)
T TIGR01295 24 ETATFFIG-----RKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI-PTSFMGTPTFVHI 97 (122)
T ss_pred CcEEEEEE-----CCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC-cccCCCCCEEEEE
Confidence 44566665 579999999766665 446889999998653 1 11234444432 0123558887 4
Q ss_pred eCCEEEcch
Q 024534 181 IGGRYIGGV 189 (266)
Q Consensus 181 I~G~~IGG~ 189 (266)
-+|+.++..
T Consensus 98 k~Gk~v~~~ 106 (122)
T TIGR01295 98 TDGKQVSVR 106 (122)
T ss_pred eCCeEEEEE
Confidence 588776544
No 74
>PRK10026 arsenate reductase; Provisional
Probab=96.92 E-value=0.0018 Score=54.96 Aligned_cols=48 Identities=8% Similarity=0.152 Sum_probs=42.9
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
.|.||... .|.-|++++++|+.+|+.|+++|+..++--.+||+..+..
T Consensus 3 ~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~ 50 (141)
T PRK10026 3 NITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIAD 50 (141)
T ss_pred EEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHh
Confidence 58899976 9999999999999999999999999887777888887765
No 75
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.91 E-value=0.0017 Score=52.26 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=40.6
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|.||+.+ .|.-|++|+++|+.++++|+++|+..++--.+||.+++..
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~ 47 (112)
T cd03034 1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAK 47 (112)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHH
Confidence 5789976 9999999999999999999999998877666777777654
No 76
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.88 E-value=0.0019 Score=52.28 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=41.5
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|.||+.. +|.-|++++++|+.+++.|+++|+..++--.+||.+++..
T Consensus 1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~ 47 (114)
T TIGR00014 1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAK 47 (114)
T ss_pred CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHH
Confidence 5789876 9999999999999999999999999887777888887765
No 77
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.86 E-value=0.0084 Score=45.98 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=42.0
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe--CCEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG------FRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI--GGRY 185 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~------~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI--~G~~ 185 (266)
..|+||+. ..+|+.|+.+..+|+. .++.+.++|++.+. ++.+.++- ..+|.++| +|+.
T Consensus 14 ~~vlv~f~-----a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~----~l~~~~~v-----~~vPt~~i~~~g~~ 79 (97)
T cd02949 14 RLILVLYT-----SPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ----EIAEAAGI-----MGTPTVQFFKDKEL 79 (97)
T ss_pred CeEEEEEE-----CCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH----HHHHHCCC-----eeccEEEEEECCeE
Confidence 34555554 2599999999998876 34778889987764 45555564 78898754 7766
Q ss_pred Ec
Q 024534 186 IG 187 (266)
Q Consensus 186 IG 187 (266)
++
T Consensus 80 v~ 81 (97)
T cd02949 80 VK 81 (97)
T ss_pred EE
Confidence 53
No 78
>PRK10387 glutaredoxin 2; Provisional
Probab=96.86 E-value=0.0048 Score=53.00 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=51.5
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE-EeCCEEEcchhHHHh
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV-FIGGRYIGGVEEVRQ 194 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV-FI~G~~IGG~del~~ 194 (266)
+.||+.. .|++|.+|+.+|+.+||+|+.++++.+... .. .+..+. .+||.+ .-+|..|.....+.+
T Consensus 1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~-----~~VPvL~~~~g~~l~eS~aI~~ 67 (210)
T PRK10387 1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQ-----KQVPILQKDDGSYMPESLDIVH 67 (210)
T ss_pred CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCC-----cccceEEecCCeEecCHHHHHH
Confidence 3578755 899999999999999999999998654322 22 233333 799999 568888888877766
Q ss_pred HHh
Q 024534 195 LNE 197 (266)
Q Consensus 195 L~e 197 (266)
..+
T Consensus 68 yL~ 70 (210)
T PRK10387 68 YID 70 (210)
T ss_pred HHH
Confidence 544
No 79
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.002 Score=52.96 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=42.6
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
.|.||... .|.-|++|+++|+++||.|+++|+..++--+++|.+++..
T Consensus 2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~ 49 (117)
T COG1393 2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSK 49 (117)
T ss_pred eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHH
Confidence 48899976 9999999999999999999999999887778888887754
No 80
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.85 E-value=0.004 Score=54.57 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=50.9
Q ss_pred EEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE-eCCEEEcchhHHHhHH
Q 024534 118 VYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF-IGGRYIGGVEEVRQLN 196 (266)
Q Consensus 118 IYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF-I~G~~IGG~del~~L~ 196 (266)
+|+.. .||+|.+|+.+|..+|++|+.+++..+.. ....++.. ..++|.+. .||..|.+...+.+..
T Consensus 2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~--~~~~~~np-----~g~vP~l~~~~g~~l~es~~I~~yL 68 (209)
T TIGR02182 2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE--ETPIRMIG-----AKQVPILQKDDGRAMPESLDIVAYF 68 (209)
T ss_pred eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc--hhHHHhcC-----CCCcceEEeeCCeEeccHHHHHHHH
Confidence 56654 89999999999999999999998865432 12233333 37999997 7889999888887754
Q ss_pred h
Q 024534 197 E 197 (266)
Q Consensus 197 e 197 (266)
+
T Consensus 69 ~ 69 (209)
T TIGR02182 69 D 69 (209)
T ss_pred H
Confidence 4
No 81
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.84 E-value=0.0055 Score=45.37 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHHCCCCCCCCCccEEEeC---CEEEcchh
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMD--SSFLNELQGILGGGGQSKLTLPRVFIG---GRYIGGVE 190 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d--~~~r~EL~ellg~~~~~~~tvPqVFI~---G~~IGG~d 190 (266)
+.||... . ++|.+++.+|+.+|++|+.+.++.. ....+++.++... .++|.+..+ |..|....
T Consensus 2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-----~~vP~l~~~~~~g~~l~eS~ 69 (81)
T cd03048 2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-----GRIPAIVDHNGTPLTVFESG 69 (81)
T ss_pred eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-----CCCCEEEeCCCCceEEEcHH
Confidence 5788753 5 9999999999999999988777642 2334566665554 889999887 67766555
Q ss_pred HHHhH
Q 024534 191 EVRQL 195 (266)
Q Consensus 191 el~~L 195 (266)
.+.+.
T Consensus 70 aI~~y 74 (81)
T cd03048 70 AILLY 74 (81)
T ss_pred HHHHH
Confidence 55443
No 82
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.80 E-value=0.0062 Score=43.80 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=42.6
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe--CCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG-----FRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI--GGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~-----~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI--~G~~I 186 (266)
..++||.++ .+|++|..+..+|+. .++.+..+|++.+.. +.+.++- ..+|.+++ +|+.+
T Consensus 11 ~~~ll~~~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~v-----~~~P~~~~~~~g~~~ 76 (93)
T cd02947 11 KPVVVDFWA-----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE----LAEEYGV-----RSIPTFLFFKNGKEV 76 (93)
T ss_pred CcEEEEEEC-----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh----HHHhcCc-----ccccEEEEEECCEEE
Confidence 445555543 499999999999988 778899999987544 3444554 78999876 77644
No 83
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.77 E-value=0.0057 Score=39.70 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=41.2
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILR-----GFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGG 183 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~-----~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G 183 (266)
|++|..+ +|++|.+++..|+ ..++.+..+|++......+. ....+ ...+|.+++.+
T Consensus 1 l~~~~~~------~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAP------WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE-LKRYG-----VGGVPTLVVFG 61 (69)
T ss_pred CEEEECC------CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH-HHhCC-----CccccEEEEEe
Confidence 3566654 9999999999999 67889999999877654333 12233 37899998765
No 84
>PRK10853 putative reductase; Provisional
Probab=96.73 E-value=0.0026 Score=52.11 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=42.0
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
|.||... .|.-|++|+++|+.+|+.|+++|+..++--.+||.+.+..
T Consensus 2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 6899876 9999999999999999999999998887777888888765
No 85
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0066 Score=46.88 Aligned_cols=70 Identities=11% Similarity=0.215 Sum_probs=47.0
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHH-HHHHHHHHHCC------CCCCCCCccEEEeCC-EEEcc
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSS-FLNELQGILGG------GGQSKLTLPRVFIGG-RYIGG 188 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~-~r~EL~ellg~------~~~~~~tvPqVFI~G-~~IGG 188 (266)
++|.+. .||+|..+...|++++|.|+++||...-. +++.|+-+=.+ +..+...+|.+.+++ +.|=|
T Consensus 5 ~lfgsn------~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSN------LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccc------cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 677765 99999999999999999999999975422 22222211100 234568999998754 44444
Q ss_pred hhHHH
Q 024534 189 VEEVR 193 (266)
Q Consensus 189 ~del~ 193 (266)
+++.
T Consensus 79 -~Dl~ 82 (85)
T COG4545 79 -DDLS 82 (85)
T ss_pred -chhh
Confidence 4443
No 86
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.49 E-value=0.014 Score=42.84 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=49.5
Q ss_pred EEEEEEc-CCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 116 VVVYFTS-LRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 116 VVIYttS-LrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
++||... -.+....+++|.+|+.+|+.+|++|+.++++.- ++. ...++|.+..+|+.|.+...+.+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~-----p~g~vPvl~~~g~~l~eS~~I~~ 68 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRS-----PKGKLPFIELNGEKIADSELIID 68 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC-----CCCCCCEEEECCEEEcCHHHHHH
Confidence 4555432 123344689999999999999999998887541 222 24889999999999888877665
Q ss_pred HH
Q 024534 195 LN 196 (266)
Q Consensus 195 L~ 196 (266)
..
T Consensus 69 yL 70 (75)
T cd03080 69 HL 70 (75)
T ss_pred HH
Confidence 43
No 87
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.46 E-value=0.018 Score=42.07 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=48.5
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
.+|... .++.|.+++.+|+.+|++|+.+.++... ...+++.++... ..+|.+..+|..|-....+.+
T Consensus 2 ~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-----~~vP~L~~~~~~l~eS~aI~~ 70 (76)
T cd03050 2 KLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-----GKVPAIVDGDFTLAESVAILR 70 (76)
T ss_pred EEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-----CCCCEEEECCEEEEcHHHHHH
Confidence 577754 8899999999999999999988876432 223456665544 899999888876655444443
No 88
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.40 E-value=0.018 Score=42.28 Aligned_cols=65 Identities=8% Similarity=-0.012 Sum_probs=49.5
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 125 VVRSTFEDCKAVRSILRGFRVQLDERDLSMDS-SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 125 gvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~-~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
+.+..++++.+++-+|+.+|++|+.+.++... ....+++++... ..+|.+..+|+.|.....+.+
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-----g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-----GKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-----CcCCEEEECCEEEEcHHHHHH
Confidence 56788999999999999999999998887542 223566665444 899999999887766555543
No 89
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.36 E-value=0.0074 Score=45.15 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeC-CEEEcchhHHHhHH
Q 024534 126 VRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIG-GRYIGGVEEVRQLN 196 (266)
Q Consensus 126 vR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~-G~~IGG~del~~L~ 196 (266)
.+..+++|.+++.+|..+|++|+.+.++... ....++ ++. ....+|.+..+ |+.|.+...+.+..
T Consensus 12 ~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~-----p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 12 VRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG-----GFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC-----CCceeCeEEECCCCEEeCHHHHHHHH
Confidence 4668999999999999999999988876432 112222 222 24899999888 88888777666554
No 90
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.25 E-value=0.018 Score=44.41 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHH------H-hC--CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSIL------R-GF--RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL------~-~~--gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
.+|++|+.....+ . .+ ++.+..+|++.+.....++.+.++- .++|.++|
T Consensus 21 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i-----~~~Pti~~ 78 (104)
T cd02953 21 DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV-----FGPPTYLF 78 (104)
T ss_pred chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC-----CCCCEEEE
Confidence 4999999887543 1 11 5777788887765545677777776 78998754
No 91
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.21 E-value=0.025 Score=49.23 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=53.5
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
+...+.||+.. .|++|.+|+.+|+.+|++|+.+.|+.. ...+++.++.-. .+||.+..+|..|--...
T Consensus 7 ~~~~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~-----g~VPvL~~~g~~l~ES~A 74 (211)
T PRK09481 7 KRSVMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPY-----QSVPTLVDRELTLYESRI 74 (211)
T ss_pred CCCeeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCC-----CCCCEEEECCEEeeCHHH
Confidence 33458899854 899999999999999999999998753 223566666544 899999988877655544
Q ss_pred HHh
Q 024534 192 VRQ 194 (266)
Q Consensus 192 l~~ 194 (266)
+.+
T Consensus 75 Il~ 77 (211)
T PRK09481 75 IME 77 (211)
T ss_pred HHH
Confidence 443
No 92
>PHA02278 thioredoxin-like protein
Probab=96.20 E-value=0.031 Score=44.50 Aligned_cols=65 Identities=14% Similarity=0.330 Sum_probs=45.2
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCC
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGG 183 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G 183 (266)
....|+||+.+ .+|+.|+.+..+|+.+ .+.+..+||+.+.....++.+.++- .++|.+ |-||
T Consensus 13 ~~~~vvV~F~A-----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-----~~iPT~i~fk~G 82 (103)
T PHA02278 13 QKKDVIVMITQ-----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-----MSTPVLIGYKDG 82 (103)
T ss_pred CCCcEEEEEEC-----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-----ccccEEEEEECC
Confidence 34567777664 6999999988877654 2558889998653223567777765 788877 4588
Q ss_pred EEE
Q 024534 184 RYI 186 (266)
Q Consensus 184 ~~I 186 (266)
+.+
T Consensus 83 ~~v 85 (103)
T PHA02278 83 QLV 85 (103)
T ss_pred EEE
Confidence 765
No 93
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.18 E-value=0.014 Score=51.67 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=41.2
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGG 183 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G 183 (266)
.|++|+++ +|++|..++.+|+.+ .|.+..+|++.+ .++.+.++- .++|.++|++
T Consensus 136 ~I~~F~a~------~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~----~~~~~~~~V-----~~vPtl~i~~ 194 (215)
T TIGR02187 136 RIEVFVTP------TCPYCPYAVLMAHKFALANDKILGEMIEANEN----PDLAEKYGV-----MSVPKIVINK 194 (215)
T ss_pred EEEEEECC------CCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC----HHHHHHhCC-----ccCCEEEEec
Confidence 56668776 999999999999875 366677887765 455556665 7999999875
No 94
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.17 E-value=0.021 Score=41.82 Aligned_cols=61 Identities=7% Similarity=-0.086 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHCCCCCCCCCccEEEeC-CEEEcchhHHHh
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSMDS-SFLNELQGILGGGGQSKLTLPRVFIG-GRYIGGVEEVRQ 194 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~d~-~~r~EL~ellg~~~~~~~tvPqVFI~-G~~IGG~del~~ 194 (266)
.|++|.+++-+|+.+|++|+.++|+... ...+++.++... .++|.+..+ |..|.....+.+
T Consensus 8 ~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-----~~vP~L~~~~g~~l~es~aI~~ 70 (75)
T cd03044 8 GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-----GKVPAFEGADGFCLFESNAIAY 70 (75)
T ss_pred CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-----CCCCEEEcCCCCEEeeHHHHHH
Confidence 7899999999999999999999887642 223556666544 899999885 666654444433
No 95
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=96.17 E-value=0.033 Score=50.76 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=56.1
Q ss_pred EEEEEEcCCCC--CCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 116 VVVYFTSLRVV--RSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 116 VVIYttSLrgv--R~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
|.||.+....- ...|++|++|+.+|..+|+.|+.+.|+.... .+++.++.-. .++|.+..+|..|.....+.
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~-----g~vPvL~~~g~~l~ES~aI~ 76 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPG-----THPPFLTYNTEVKTDVNKIE 76 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcC-----CCCCEEEECCEEeecHHHHH
Confidence 56666653221 2579999999999999999999888876532 3566666554 78999988888888777666
Q ss_pred hHHh
Q 024534 194 QLNE 197 (266)
Q Consensus 194 ~L~e 197 (266)
+..+
T Consensus 77 eYL~ 80 (236)
T TIGR00862 77 EFLE 80 (236)
T ss_pred HHHH
Confidence 6544
No 96
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.08 E-value=0.026 Score=42.34 Aligned_cols=61 Identities=30% Similarity=0.482 Sum_probs=43.7
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCE
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGR 184 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~ 184 (266)
...|+||+. .++|+.|+.++..|..+ +|.|-.+|++.+ .++.+.++- ..+|.++ -+|+
T Consensus 17 ~~~vvv~f~-----~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~v-----~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 17 DKPVVVYFY-----APWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN----KELCKKYGV-----KSVPTIIFFKNGK 82 (103)
T ss_dssp SSEEEEEEE-----STTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS----HHHHHHTTC-----SSSSEEEEEETTE
T ss_pred CCCEEEEEe-----CCCCCccccccceecccccccccccccchhhhhcc----chhhhccCC-----CCCCEEEEEECCc
Confidence 455666665 36999999999887643 477888998765 456666665 8899884 4776
Q ss_pred EEc
Q 024534 185 YIG 187 (266)
Q Consensus 185 ~IG 187 (266)
.+.
T Consensus 83 ~~~ 85 (103)
T PF00085_consen 83 EVK 85 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 97
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=96.08 E-value=0.011 Score=43.16 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCC--C-HHHHHHHHHHHCCCCCCCCCccEEEe-CCEEEcchhHHHhHHh
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSM--D-SSFLNELQGILGGGGQSKLTLPRVFI-GGRYIGGVEEVRQLNE 197 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~--d-~~~r~EL~ellg~~~~~~~tvPqVFI-~G~~IGG~del~~L~e 197 (266)
.||++.+++-+|+.+|++|+..-+.. + .....++.++.+. .+||.+.. +|+.|.....+.++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-----~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-----GKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT------SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-----eEEEEEEECCCCEeeCHHHHHHHHh
Confidence 38999999999999999988766522 1 2223577777776 89999998 8999887777766544
No 98
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=95.98 E-value=0.028 Score=40.60 Aligned_cols=61 Identities=8% Similarity=-0.060 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhHH
Q 024534 131 EDCKAVRSILRGFRVQLDERDLSMD--SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLN 196 (266)
Q Consensus 131 ~~C~~vk~iL~~~gV~~eErDVs~d--~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L~ 196 (266)
..+.+++.+|+.+|+.|+.+.++.. .....++.++... ..+|.+..+|..|.....+.+..
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-----~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-----GKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-----CCCCEEEECCEEEEcHHHHHHHH
Confidence 4688999999999999998887643 1223555555443 89999999988887766665543
No 99
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.95 E-value=0.019 Score=45.66 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 128 STFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
+.|.-|++|+++|+.+|+.|+++|+..++--++||.+++..
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSK 44 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHH
Confidence 39999999999999999999999999877667777766643
No 100
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.90 E-value=0.0091 Score=48.91 Aligned_cols=49 Identities=33% Similarity=0.749 Sum_probs=39.7
Q ss_pred ccccccCceeeEEcCCCCCcceeEecCCC---ceecCCccccCceecCCCCC
Q 024534 214 GVCNICGGYSFVLCGECDGSHKVYAEKGG---GFKSCNACNENGLIRCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rfv~C~~C~GS~K~~~~~~~---~~~rC~~CNEnGLirCp~C~ 262 (266)
..|..|.|.+...|..|+|+-.+...... ....|+.|+-.|.+.|+.|.
T Consensus 42 v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 42 QPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred CCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCC
Confidence 47999988888899999999776543321 24699999999999999994
No 101
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=95.85 E-value=0.043 Score=39.82 Aligned_cols=66 Identities=9% Similarity=-0.006 Sum_probs=47.8
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
.+|... ..+.+.+++.+|+.+|++|+.++++... ...+++.++... .++|.+..+|..|..-..+.
T Consensus 2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-----~~vP~L~~~~~~l~eS~aI~ 69 (73)
T cd03047 2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-----GRVPVLEDGDFVLWESNAIL 69 (73)
T ss_pred EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-----CCCCEEEECCEEEECHHHHH
Confidence 467654 7889999999999999999988876422 223556665444 79999988887766444443
No 102
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=95.78 E-value=0.04 Score=40.22 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=45.7
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeC-CEEEcchhHHH
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIG-GRYIGGVEEVR 193 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~-G~~IGG~del~ 193 (266)
.||+.. .+ .+.+++.+|..+|+.|+.++++... ...+++.++... ..+|.+..+ |..+.....+.
T Consensus 2 ~Ly~~~------~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-----~~vP~l~~~~g~~l~eS~aI~ 69 (77)
T cd03057 2 KLYYSP------GA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-----GQVPALVLDDGEVLTESAAIL 69 (77)
T ss_pred EEEeCC------CC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-----CCCCEEEECCCcEEEcHHHHH
Confidence 467643 44 4789999999999999988776532 224677776554 899999887 66655444444
Q ss_pred h
Q 024534 194 Q 194 (266)
Q Consensus 194 ~ 194 (266)
+
T Consensus 70 ~ 70 (77)
T cd03057 70 Q 70 (77)
T ss_pred H
Confidence 3
No 103
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.69 E-value=0.023 Score=56.62 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=46.0
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCC-----CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEE
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFR-----VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRY 185 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g-----V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~ 185 (266)
.++-.|.+|.|. +||+|..|.++++.+. |..+-+|.... .++.+.++- .+||++||||+.
T Consensus 116 ~~~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~----~~~~~~~~v-----~~VP~~~i~~~~ 180 (515)
T TIGR03140 116 NGPLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALF----QDEVEALGI-----QGVPAVFLNGEE 180 (515)
T ss_pred CCCeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhC----HHHHHhcCC-----cccCEEEECCcE
Confidence 345579999987 9999999999998764 44556665443 444555554 799999999976
Q ss_pred Ec
Q 024534 186 IG 187 (266)
Q Consensus 186 IG 187 (266)
++
T Consensus 181 ~~ 182 (515)
T TIGR03140 181 FH 182 (515)
T ss_pred EE
Confidence 64
No 104
>PTZ00051 thioredoxin; Provisional
Probab=95.69 E-value=0.082 Score=39.88 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=40.7
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~~I 186 (266)
..|+||+. ..+|+.|+.+...|+.+ ++.|..+|++.. .++.+.++- ..+|.++ -+|+.+
T Consensus 19 ~~vli~f~-----~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----~~~~~~~~v-----~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 19 ELVIVDFY-----AEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL----SEVAEKENI-----TSMPTFKVFKNGSVV 84 (98)
T ss_pred CeEEEEEE-----CCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch----HHHHHHCCC-----ceeeEEEEEeCCeEE
Confidence 45555554 36999999998888763 577888888654 345555564 6788764 477655
Q ss_pred c
Q 024534 187 G 187 (266)
Q Consensus 187 G 187 (266)
+
T Consensus 85 ~ 85 (98)
T PTZ00051 85 D 85 (98)
T ss_pred E
Confidence 4
No 105
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.67 E-value=0.068 Score=40.29 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=39.7
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGRY 185 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~~ 185 (266)
..|+||+.+ .+|+.|+.+...|..+ .+.+-.+|++.+ .+|.+.++- ..+|.++ -+|+.
T Consensus 13 ~~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~l~~~~~i-----~~~Pt~~~~~~g~~ 78 (96)
T cd02956 13 VPVVVDFWA-----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ----PQIAQQFGV-----QALPTVYLFAAGQP 78 (96)
T ss_pred CeEEEEEEC-----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC----HHHHHHcCC-----CCCCEEEEEeCCEE
Confidence 455555543 5999999998877643 244667777665 455666665 7899885 47765
Q ss_pred E
Q 024534 186 I 186 (266)
Q Consensus 186 I 186 (266)
+
T Consensus 79 ~ 79 (96)
T cd02956 79 V 79 (96)
T ss_pred e
Confidence 4
No 106
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.63 E-value=0.055 Score=42.81 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=45.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~I 186 (266)
..|+|++.+ ++|+.|+.+...|+.+ ++.|..+|++.+ +|.+.++- ..+|.+ |-+|+.+
T Consensus 25 ~~vvv~F~a-----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i-----~~~Pt~~~f~~G~~v 89 (113)
T cd02957 25 TRVVVHFYE-----PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDI-----KVLPTLLVYKNGELI 89 (113)
T ss_pred CEEEEEEeC-----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCC-----CcCCEEEEEECCEEE
Confidence 456555542 5999999998888753 467778887543 66666665 788876 6699877
Q ss_pred cchhHHHhH
Q 024534 187 GGVEEVRQL 195 (266)
Q Consensus 187 GG~del~~L 195 (266)
+-......+
T Consensus 90 ~~~~G~~~~ 98 (113)
T cd02957 90 DNIVGFEEL 98 (113)
T ss_pred EEEecHHHh
Confidence 655444433
No 107
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.55 E-value=0.026 Score=56.08 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=46.6
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCC-----CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEE
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFR-----VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRY 185 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g-----V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~ 185 (266)
.+.-.|.+|.|. +|++|..|.++++.+. |.++-+|.... .++.+.++- .+||++||||+.
T Consensus 115 ~~~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~----~~~~~~~~v-----~~VP~~~i~~~~ 179 (517)
T PRK15317 115 DGDFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALF----QDEVEARNI-----MAVPTVFLNGEE 179 (517)
T ss_pred CCCeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhC----HhHHHhcCC-----cccCEEEECCcE
Confidence 345679999987 9999999999988764 55666776544 455555665 799999999976
Q ss_pred Ec
Q 024534 186 IG 187 (266)
Q Consensus 186 IG 187 (266)
+.
T Consensus 180 ~~ 181 (517)
T PRK15317 180 FG 181 (517)
T ss_pred EE
Confidence 54
No 108
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.52 E-value=0.065 Score=42.91 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=43.8
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~I 186 (266)
..|+||+.+ ++|+.|+.+...|+.+ ++.|..+|++... ++.+.++- .++|.+ |-+|+.+
T Consensus 23 ~~vvV~f~a-----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~----~l~~~~~v-----~~vPt~l~fk~G~~v 88 (113)
T cd02989 23 ERVVCHFYH-----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP----FLVEKLNI-----KVLPTVILFKNGKTV 88 (113)
T ss_pred CcEEEEEEC-----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH----HHHHHCCC-----ccCCEEEEEECCEEE
Confidence 456666653 6999999999888763 5788899987764 45666665 778876 5688766
Q ss_pred c
Q 024534 187 G 187 (266)
Q Consensus 187 G 187 (266)
+
T Consensus 89 ~ 89 (113)
T cd02989 89 D 89 (113)
T ss_pred E
Confidence 4
No 109
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.46 E-value=0.15 Score=37.94 Aligned_cols=59 Identities=19% Similarity=0.424 Sum_probs=40.7
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe--CCEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI--GGRY 185 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI--~G~~ 185 (266)
..|+||+.+ .+|+.|+.+...|+.+ .+.|-.+|++.+. ++.+.++- ..+|.+++ +|+.
T Consensus 15 ~~vvi~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v-----~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 15 KPVLVDFWA-----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP----DIAAKYGI-----RSIPTLLLFKNGKE 80 (101)
T ss_pred CcEEEEEEC-----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHcCC-----CcCCEEEEEeCCcE
Confidence 456666553 5999999988777653 3678888887764 44455565 78999866 7764
Q ss_pred E
Q 024534 186 I 186 (266)
Q Consensus 186 I 186 (266)
+
T Consensus 81 ~ 81 (101)
T TIGR01068 81 V 81 (101)
T ss_pred e
Confidence 4
No 110
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.30 E-value=0.099 Score=40.41 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhC---------CCcEEEEECCCCHH----------------HHHHHHHHHC
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGF---------RVQLDERDLSMDSS----------------FLNELQGILG 167 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~---------gV~~eErDVs~d~~----------------~r~EL~ellg 167 (266)
...++||++ .++|++|+++...|... ++.+..+++..+.. ..++|.+.+|
T Consensus 5 ~k~~v~~F~-----~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 5 GKPIVVVFT-----DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp SSEEEEEEE------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CCEEEEEEE-----CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 344555554 36999999887766531 34456666654331 1245666666
Q ss_pred CCCCCCCCccEEE-eC--CE---EEcchhHH
Q 024534 168 GGGQSKLTLPRVF-IG--GR---YIGGVEEV 192 (266)
Q Consensus 168 ~~~~~~~tvPqVF-I~--G~---~IGG~del 192 (266)
- ...|.++ +| |+ .+-|+-.-
T Consensus 80 v-----~gtPt~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 80 V-----NGTPTIVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp -------SSSEEEECTTTSCEEEEEESS--H
T ss_pred C-----CccCEEEEEcCCCCEEEEecCCCCH
Confidence 5 7788885 54 66 44565433
No 111
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.23 E-value=0.11 Score=42.50 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=43.0
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCC------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFR------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRY 185 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~ 185 (266)
..|||++.+ .||+.|+.+..+|+.+- +.|-.+|++.++ +|.+.++- .++|.+ |-||+.
T Consensus 15 ~~vVV~F~A-----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~----~la~~~~V-----~~iPTf~~fk~G~~ 80 (114)
T cd02954 15 KVVVIRFGR-----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP----DFNKMYEL-----YDPPTVMFFFRNKH 80 (114)
T ss_pred CEEEEEEEC-----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH----HHHHHcCC-----CCCCEEEEEECCEE
Confidence 346665542 59999999988886542 467889998764 56666665 789987 458877
Q ss_pred Ec
Q 024534 186 IG 187 (266)
Q Consensus 186 IG 187 (266)
++
T Consensus 81 v~ 82 (114)
T cd02954 81 MK 82 (114)
T ss_pred EE
Confidence 64
No 112
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.16 E-value=0.088 Score=46.49 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=42.9
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe--CCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI--GGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI--~G~~I 186 (266)
-.|++|+++ .-++|+.|+.+..+|+.+ ++.+..+|++.|.. .++.+.++- ..+|.+.+ ||+.+
T Consensus 21 ~~i~~f~~~---~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~~V-----~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 21 VEIVVFTDN---DKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKYGV-----ERVPTTIILEEGKDG 90 (215)
T ss_pred eEEEEEcCC---CCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHcCC-----CccCEEEEEeCCeee
Confidence 458888761 124999999999999766 24556777765432 566666765 88888865 65444
No 113
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.06 E-value=0.11 Score=41.50 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=36.1
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHH---------hCCCcEEEEECCCCHH---------HHHHHHHHHCCCCCCCCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILR---------GFRVQLDERDLSMDSS---------FLNELQGILGGGGQSKLT 175 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~---------~~gV~~eErDVs~d~~---------~r~EL~ellg~~~~~~~t 175 (266)
..|+|++.+ .+|++|++....|. ..++.+..+|++.+.. -..++...++- ..
T Consensus 15 k~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v-----~~ 84 (125)
T cd02951 15 KPLLLLFSQ-----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV-----RF 84 (125)
T ss_pred CcEEEEEeC-----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC-----cc
Confidence 345555542 59999998875442 1245566777765421 12466666665 78
Q ss_pred ccEE-EeCC
Q 024534 176 LPRV-FIGG 183 (266)
Q Consensus 176 vPqV-FI~G 183 (266)
+|.+ |+++
T Consensus 85 ~Pt~~~~~~ 93 (125)
T cd02951 85 TPTVIFLDP 93 (125)
T ss_pred ccEEEEEcC
Confidence 9996 5553
No 114
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.05 E-value=0.22 Score=38.78 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=41.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~~I 186 (266)
+.|+|++.+ .+|+.|+.....|+.+ ++.|..+|++.+... .++.+.++- ..+|.++ -+|+.+
T Consensus 16 k~vvv~F~a-----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V-----~~~Pt~~~~~~G~~v 84 (103)
T cd02985 16 RLVVLEFAL-----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKI-----IEVPHFLFYKDGEKI 84 (103)
T ss_pred CEEEEEEEC-----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCC-----CcCCEEEEEeCCeEE
Confidence 445555553 5999999888888753 567888888765432 355555554 7788664 488654
No 115
>PRK10996 thioredoxin 2; Provisional
Probab=95.01 E-value=0.11 Score=43.07 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=39.1
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGRY 185 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~~ 185 (266)
..|+||+. ..+|+.|+.....|... ++.+..+|++.+. ++.+.++- .++|.++ -+|+.
T Consensus 53 k~vvv~F~-----a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~----~l~~~~~V-----~~~Ptlii~~~G~~ 118 (139)
T PRK10996 53 LPVVIDFW-----APWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER----ELSARFRI-----RSIPTIMIFKNGQV 118 (139)
T ss_pred CeEEEEEE-----CCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH----HHHHhcCC-----CccCEEEEEECCEE
Confidence 44555554 36999999887777653 3556777887654 45555564 7788774 48875
Q ss_pred E
Q 024534 186 I 186 (266)
Q Consensus 186 I 186 (266)
+
T Consensus 119 v 119 (139)
T PRK10996 119 V 119 (139)
T ss_pred E
Confidence 5
No 116
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.93 E-value=0.057 Score=54.40 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=45.3
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEE
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRY 185 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~ 185 (266)
+.-.|.+|.+. +|++|.++.+.++.+ +|..+.+|+... .++.+.++- .++|.+||||+.
T Consensus 476 ~~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~----~~~~~~~~v-----~~vP~~~i~~~~ 539 (555)
T TIGR03143 476 KPVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF----PDLKDEYGI-----MSVPAIVVDDQQ 539 (555)
T ss_pred CCeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceEEEEECccc----HHHHHhCCc-----eecCEEEECCEE
Confidence 34468898876 999999888766543 688999999765 455555664 899999999964
No 117
>PRK09381 trxA thioredoxin; Provisional
Probab=94.87 E-value=0.14 Score=39.67 Aligned_cols=60 Identities=15% Similarity=0.339 Sum_probs=40.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe--CCEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG----F--RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI--GGRY 185 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~----~--gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI--~G~~ 185 (266)
..|+|++.+ .+|+.|+.+...|+. + ++.+-.+|++.+.. +.+.++- .++|.+++ +|+.
T Consensus 22 ~~vvv~f~~-----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v-----~~~Pt~~~~~~G~~ 87 (109)
T PRK09381 22 GAILVDFWA-----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGI-----RGIPTLLLFKNGEV 87 (109)
T ss_pred CeEEEEEEC-----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh----HHHhCCC-----CcCCEEEEEeCCeE
Confidence 445555543 599999999877764 2 35677888876543 3444554 88998855 8877
Q ss_pred Ec
Q 024534 186 IG 187 (266)
Q Consensus 186 IG 187 (266)
++
T Consensus 88 ~~ 89 (109)
T PRK09381 88 AA 89 (109)
T ss_pred EE
Confidence 65
No 118
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=94.69 E-value=0.12 Score=38.60 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=34.8
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGF--------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~--------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
-|++|+++ +|+.|+.....|+.. ++.+..+|++.+ .++.+.++- ..+|.+|+
T Consensus 16 ~~i~f~~~------~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~i-----~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAP------WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE----KDLASRFGV-----SGFPTIKF 75 (102)
T ss_pred EEEEEECC------CCHHHHhhChHHHHHHHHhccCCceEEEEEEccch----HHHHHhCCC-----CcCCEEEE
Confidence 35666655 999999876666542 266777787665 445555665 78998854
No 119
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.55 E-value=0.19 Score=43.55 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~I 186 (266)
..|||++. ..+|+.|+.+..+|+.+ .+.|..+|++.. ++.+.++- ..+|.| |-+|+.|
T Consensus 84 ~~VVV~Fy-----a~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v-----~~vPTlllyk~G~~v 148 (175)
T cd02987 84 TTVVVHIY-----EPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDT-----DALPALLVYKGGELI 148 (175)
T ss_pred cEEEEEEE-----CCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCC-----CCCCEEEEEECCEEE
Confidence 36777665 46999999888877654 467888888642 56666665 789976 5699876
Q ss_pred c---chhHHH-hHHhhccHHHHhhc
Q 024534 187 G---GVEEVR-QLNETGELKKFVEG 207 (266)
Q Consensus 187 G---G~del~-~L~esGeL~~lL~~ 207 (266)
+ |+++.. .=.....|+.+|..
T Consensus 149 ~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 149 GNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEechHHhcCCCCCHHHHHHHHHh
Confidence 4 444322 11122456666654
No 120
>PLN02378 glutathione S-transferase DHAR1
Probab=94.30 E-value=0.17 Score=44.33 Aligned_cols=61 Identities=7% Similarity=0.020 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 128 STFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
..|++|.+|+-+|+.+|++|+.+.|+.... .+++.++.-. .+||.+-.+|..|.....+.+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~-----G~VPvL~~~~~~l~ES~aI~~ 78 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQ-----GKVPVLKIDDKWVTDSDVIVG 78 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCC-----CCCCEEEECCEEecCHHHHHH
Confidence 479999999999999999998877765322 2355555444 899999888876665444443
No 121
>PRK15113 glutathione S-transferase; Provisional
Probab=94.30 E-value=0.24 Score=43.16 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=51.0
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEV 192 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del 192 (266)
.++||... -.++++|.+|+-+|..+||+|+.+.|+... ...+++.++.-. ..||.+.+||..|-.-..+
T Consensus 5 ~~~Ly~~~----~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-----g~VP~L~~~~~~l~ES~aI 75 (214)
T PRK15113 5 AITLYSDA----HFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-----RRVPTLQHDDFELSESSAI 75 (214)
T ss_pred eEEEEeCC----CCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-----CCCCEEEECCEEEecHHHH
Confidence 47888742 125899999999999999999988876431 223566666544 8999999988766544444
Q ss_pred Hh
Q 024534 193 RQ 194 (266)
Q Consensus 193 ~~ 194 (266)
.+
T Consensus 76 ~~ 77 (214)
T PRK15113 76 AE 77 (214)
T ss_pred HH
Confidence 43
No 122
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=94.28 E-value=0.089 Score=45.15 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=46.6
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCC-C--HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhH
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSM-D--SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~-d--~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L 195 (266)
.++.+.+|+.+|..+||.|+.+.++. . ....+++.++... .++|.+.+||..|-....+.+.
T Consensus 7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-----g~vP~L~~~g~~l~ES~aI~~y 71 (210)
T TIGR01262 7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-----GLVPTLDIDGEVLTQSLAIIEY 71 (210)
T ss_pred CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-----CcCCEEEECCEEeecHHHHHHH
Confidence 67899999999999999999988874 1 1123456655443 8999999999887766655543
No 123
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=93.90 E-value=0.18 Score=46.44 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhH
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L 195 (266)
.|++|.+|+-+|+.+|++|+.+.|+... .-+++.++.-. ..+|.+..+|..|.....+.+.
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~-----GkVPvL~~d~~~L~ES~aI~~Y 132 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPE-----GKVPVVKLDEKWVADSDVITQA 132 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCC-----CCCCEEEECCEEEecHHHHHHH
Confidence 7999999999999999999987776542 12445555443 8999999998877655555443
No 124
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.77 E-value=0.34 Score=37.04 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCC
Q 024534 128 STFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGG 183 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G 183 (266)
.+|+.|+.+...++.+ .+.+-.+|++.+ .++.+.++- ..+|.++ -+|
T Consensus 29 ~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i-----~~~Pt~~~~~~g 83 (104)
T cd03004 29 PWCGPCQALLPELRKAARALKGKVKVGSVDCQKY----ESLCQQANI-----RAYPTIRLYPGN 83 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch----HHHHHHcCC-----CcccEEEEEcCC
Confidence 4999999887777643 356778888764 345555564 7888774 455
No 125
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=93.56 E-value=0.46 Score=35.58 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=38.7
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRY 185 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~ 185 (266)
..|+|++. ..+|..|+++...|+.+ .+.+-.+|++.. .++.+.++- ..+|.+ |.+|+.
T Consensus 15 ~~v~v~f~-----~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~----~~~~~~~~i-----~~~Pt~~~~~~g~~ 80 (97)
T cd02984 15 KLLVLHFW-----APWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL----PEISEKFEI-----TAVPTFVFFRNGTI 80 (97)
T ss_pred CEEEEEEE-----CCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC----HHHHHhcCC-----ccccEEEEEECCEE
Confidence 44555544 36999999998888752 455666776543 355566665 778965 557765
Q ss_pred E
Q 024534 186 I 186 (266)
Q Consensus 186 I 186 (266)
+
T Consensus 81 ~ 81 (97)
T cd02984 81 V 81 (97)
T ss_pred E
Confidence 4
No 126
>PLN02473 glutathione S-transferase
Probab=93.51 E-value=0.27 Score=42.44 Aligned_cols=69 Identities=12% Similarity=-0.030 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMD--SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d--~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
+.||... +++++.+|+-+|..+||+|+.+.|+.. .....++.++... ..+|.+..||..|.....+.
T Consensus 3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-----g~vP~L~~~g~~l~ES~aI~ 71 (214)
T PLN02473 3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-----GQVPAIEDGDLKLFESRAIA 71 (214)
T ss_pred eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-----CCCCeEEECCEEEEehHHHH
Confidence 5678653 788999999999999999988766432 1223455555433 79999999998887776665
Q ss_pred hH
Q 024534 194 QL 195 (266)
Q Consensus 194 ~L 195 (266)
+.
T Consensus 72 ~Y 73 (214)
T PLN02473 72 RY 73 (214)
T ss_pred HH
Confidence 53
No 127
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=93.45 E-value=0.58 Score=34.78 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=45.1
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
..+|... ..+.|.+++.+|+..|++|+.+.++...++. ++..- + ......+|.+.+||..|...-.+..
T Consensus 2 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~-~--~~~~g~vP~L~~~g~~l~ES~AI~~ 70 (79)
T cd03077 2 PVLHYFN------GRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKD-G--SLMFQQVPMVEIDGMKLVQTRAILN 70 (79)
T ss_pred CEEEEeC------CCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccc-c--CCCCCCCCEEEECCEEEeeHHHHHH
Confidence 4577754 5678899999999999999988776533221 11110 0 0113689999989877765544443
No 128
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.44 E-value=0.19 Score=38.28 Aligned_cols=55 Identities=15% Similarity=0.384 Sum_probs=36.7
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhC-------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe--CCE
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGF-------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI--GGR 184 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~-------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI--~G~ 184 (266)
-||.|++ ++|+.|+.+...|+.+ +|.+..+|++.+. ++.+.++- .++|.+++ +|+
T Consensus 19 ~lv~f~a------~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~----~~~~~~~i-----~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYA------PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP----GLSGRFFV-----TALPTIYHAKDGV 82 (101)
T ss_pred EEEEEEC------CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH----hHHHHcCC-----cccCEEEEeCCCC
Confidence 3555554 4999999988887643 4667788887654 34445554 78888865 553
No 129
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=93.25 E-value=0.48 Score=37.41 Aligned_cols=59 Identities=17% Similarity=0.332 Sum_probs=37.9
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG-------FRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGR 184 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~-------~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~ 184 (266)
..|+|++.+ ++|+.|+....+|+. .++.+-.+|++.+. ++.+.++- .++|.++ .+|+
T Consensus 25 ~~vlV~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~----~l~~~~~V-----~~~Pt~~i~~~g~ 90 (111)
T cd02963 25 KPYLIKITS-----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER----RLARKLGA-----HSVPAIVGIINGQ 90 (111)
T ss_pred CeEEEEEEC-----CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH----HHHHHcCC-----ccCCEEEEEECCE
Confidence 345554443 599999877655532 25777788887653 44555564 7889774 6886
Q ss_pred EE
Q 024534 185 YI 186 (266)
Q Consensus 185 ~I 186 (266)
.+
T Consensus 91 ~~ 92 (111)
T cd02963 91 VT 92 (111)
T ss_pred EE
Confidence 55
No 130
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=93.25 E-value=0.9 Score=35.13 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=36.4
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC----C---CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF----R---VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGR 184 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~----g---V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~ 184 (266)
..|+||+.+ .+|+.|+.+...|+.+ + +.+..+|++ + .++.+.++- ..+|.+ |-+|+
T Consensus 18 ~~vvv~F~a-----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~----~~~~~~~~v-----~~~Pt~~~~~~g~ 82 (102)
T cd02948 18 GLTVVDVYQ-----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T----IDTLKRYRG-----KCEPTFLFYKNGE 82 (102)
T ss_pred CeEEEEEEC-----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C----HHHHHHcCC-----CcCcEEEEEECCE
Confidence 345555543 5999999888777643 2 456677776 3 244555554 778865 45776
Q ss_pred EE
Q 024534 185 YI 186 (266)
Q Consensus 185 ~I 186 (266)
.+
T Consensus 83 ~~ 84 (102)
T cd02948 83 LV 84 (102)
T ss_pred EE
Confidence 43
No 131
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.16 E-value=0.42 Score=39.77 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCcEEEEECCCCHH-HH--HHHHHHHCCCCCCCCCccEEEeCCEEE--cchhHHHhH
Q 024534 134 KAVRSILRGFRVQLDERDLSMDSS-FL--NELQGILGGGGQSKLTLPRVFIGGRYI--GGVEEVRQL 195 (266)
Q Consensus 134 ~~vk~iL~~~gV~~eErDVs~d~~-~r--~EL~ellg~~~~~~~tvPqVFI~G~~I--GG~del~~L 195 (266)
..+...|++.||.++.+++++++. |. +.+.+++.. .+...||.++|||+.+ |.|=...+|
T Consensus 30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~--~G~e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT--EGAEALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH--H-GGG-SEEEETTEEEEESS---HHHH
T ss_pred HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH--cCcccCCEEEECCEEEEecCCCCHHHH
Confidence 356677899999999999998864 22 233444431 1248999999999876 777554443
No 132
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=93.03 E-value=0.4 Score=39.15 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=43.6
Q ss_pred CCcEEEEEEcCCCCCCC--ChHHHHHHHHHHhCC------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeC
Q 024534 113 DQRVVVYFTSLRVVRST--FEDCKAVRSILRGFR------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIG 182 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~t--C~~C~~vk~iL~~~g------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~ 182 (266)
++.+||++.. .+ |+.|..+.-+|+.+- +.|-.+|++.++ +|...++- .++|.+ |-|
T Consensus 27 ~~~~v~~f~~-----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V-----~sIPTli~fkd 92 (111)
T cd02965 27 GGDLVLLLAG-----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGV-----LRTPALLFFRD 92 (111)
T ss_pred CCCEEEEecC-----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCC-----CcCCEEEEEEC
Confidence 3555555543 34 999999998887652 446678887653 67777775 788877 569
Q ss_pred CEEEcch
Q 024534 183 GRYIGGV 189 (266)
Q Consensus 183 G~~IGG~ 189 (266)
|+.++..
T Consensus 93 Gk~v~~~ 99 (111)
T cd02965 93 GRYVGVL 99 (111)
T ss_pred CEEEEEE
Confidence 9888654
No 133
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=93.01 E-value=0.43 Score=34.82 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHh----C----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILRG----F----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~----~----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
.+|+.|+.+...|+. + ++.+..+|.+.+ .++.+.++- ..+|.+++
T Consensus 25 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~i-----~~~Pt~~~ 77 (101)
T cd02961 25 PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN----NDLCSEYGV-----RGYPTIKL 77 (101)
T ss_pred CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch----HHHHHhCCC-----CCCCEEEE
Confidence 599999998887754 3 345666666553 455566665 78998853
No 134
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=92.83 E-value=0.62 Score=38.76 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE-e--CCE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF-I--GGR 184 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF-I--~G~ 184 (266)
..|+||+.+ .+|+.|+.....|..+ ++.|..+|++.+. + .++.+.++- ..+|.++ + +|+
T Consensus 21 k~vvV~F~A-----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~V-----~~iPt~v~~~~~G~ 88 (142)
T cd02950 21 KPTLVEFYA-----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYRV-----DGIPHFVFLDREGN 88 (142)
T ss_pred CEEEEEEEC-----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcCC-----CCCCEEEEECCCCC
Confidence 345555543 5999999888887653 3556777776432 1 244455554 7899875 5 465
Q ss_pred EE---cchhHHHhHHhhccHHHHhhcCC
Q 024534 185 YI---GGVEEVRQLNETGELKKFVEGLP 209 (266)
Q Consensus 185 ~I---GG~del~~L~esGeL~~lL~~~~ 209 (266)
.+ .|+..-.++.+ .|++++++.+
T Consensus 89 ~v~~~~G~~~~~~l~~--~l~~l~~~~~ 114 (142)
T cd02950 89 EEGQSIGLQPKQVLAQ--NLDALVAGEP 114 (142)
T ss_pred EEEEEeCCCCHHHHHH--HHHHHHcCCC
Confidence 44 23332233322 4666666543
No 135
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.57 Score=37.68 Aligned_cols=58 Identities=26% Similarity=0.368 Sum_probs=39.7
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhCC-----CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCE
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGFR-----VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGR 184 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g-----V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~ 184 (266)
...|||++++ .+|+-|+.+.-+|+.+. +.|-.+||+. -.++.+.++- ..+|.+. -+|+
T Consensus 21 ~kliVvdF~a-----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V-----~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 21 DKLVVVDFYA-----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNV-----KAMPTFVFYKGGE 85 (106)
T ss_pred CCeEEEEEEC-----CCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCc-----eEeeEEEEEECCE
Confidence 3556776654 59999999999999874 4467889976 2344444443 7889873 4554
No 136
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=92.71 E-value=0.42 Score=37.01 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHhC------------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCE
Q 024534 128 STFEDCKAVRSILRGF------------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGR 184 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~------------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~ 184 (266)
++|++|++....|+.+ .+.|-.+|++.+ .++.+.++- .++|.++ -+|+
T Consensus 28 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~----~~l~~~~~v-----~~~Ptl~~~~~g~ 89 (108)
T cd02996 28 DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE----SDIADRYRI-----NKYPTLKLFRNGM 89 (108)
T ss_pred CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC----HHHHHhCCC-----CcCCEEEEEeCCc
Confidence 4999999998888532 356777888765 356666665 8899874 4554
No 137
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=92.60 E-value=0.45 Score=36.32 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCE
Q 024534 128 STFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGR 184 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~ 184 (266)
++|+.|+.+...|+.+ .+.+-.+|++.+. ++.+.++- ..+|.++ -+|+
T Consensus 28 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~----~~~~~~~v-----~~~Pt~~~~~~g~ 83 (101)
T cd03003 28 PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR----MLCRSQGV-----NSYPSLYVFPSGM 83 (101)
T ss_pred CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH----HHHHHcCC-----CccCEEEEEcCCC
Confidence 5999999988887654 2456778887653 34445554 7889884 4665
No 138
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.17 Score=43.63 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=40.8
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEEE
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRYI 186 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~I 186 (266)
||-|+.. +|.-|+.+.-+|+.+ .+++..+|++.+. ||.+.++- ..+|.| |-||+-+
T Consensus 65 lVdF~A~------WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~----ela~~Y~I-----~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAE------WCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP----ELAEDYEI-----SAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecC------cCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc----chHhhcce-----eeeeEEEEEECCEEe
Confidence 5666655 999999999999876 3557788887764 45555654 788887 6688654
No 139
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.77 Score=42.17 Aligned_cols=65 Identities=14% Similarity=-0.008 Sum_probs=49.7
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHH-HHHHCCCCCCCCCccEEEeCCEEEcch
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNEL-QGILGGGGQSKLTLPRVFIGGRYIGGV 189 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL-~ellg~~~~~~~tvPqVFI~G~~IGG~ 189 (266)
++.|.||.+= .||+-++++-.|+.+||+|+.++++... +.+| .+..- -...+|.+-.||+.|+--
T Consensus 7 ~~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np----~hkKVPvL~Hn~k~i~ES 72 (231)
T KOG0406|consen 7 DGTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNP----VHKKVPVLEHNGKPICES 72 (231)
T ss_pred CCeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhcc----ccccCCEEEECCceehhh
Confidence 3779999875 8999999999999999999888876532 2333 33321 247899999999997633
No 140
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=91.87 E-value=0.76 Score=37.76 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=43.9
Q ss_pred CCCcEEEEEEcCCCCCCCCh--HHH----------HHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE
Q 024534 112 ADQRVVVYFTSLRVVRSTFE--DCK----------AVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV 179 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~--~C~----------~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV 179 (266)
.+..||+|+.. .+|. +|+ .+..+|+..+|.+-.+|++.+ .+|.+.+|- .++|.+
T Consensus 26 ~~~~vvv~f~a-----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~----~~La~~~~I-----~~iPTl 91 (120)
T cd03065 26 YDVLCLLYHEP-----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD----AKVAKKLGL-----DEEDSI 91 (120)
T ss_pred CCceEEEEECC-----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC----HHHHHHcCC-----ccccEE
Confidence 34568888865 3443 586 345566677899999999877 566677775 778876
Q ss_pred --EeCCEEEc
Q 024534 180 --FIGGRYIG 187 (266)
Q Consensus 180 --FI~G~~IG 187 (266)
|.||+.+.
T Consensus 92 ~lfk~G~~v~ 101 (120)
T cd03065 92 YVFKDDEVIE 101 (120)
T ss_pred EEEECCEEEE
Confidence 77998664
No 141
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=91.82 E-value=1.5 Score=39.64 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhC---CCcEEEE
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGF---RVQLDER 150 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~---gV~~eEr 150 (266)
+...|++|+ -..||||+++...|+.+ +|.+..+
T Consensus 107 ~k~~I~vFt------Dp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 107 EKHVITVFT------DITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCEEEEEEE------CCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344577776 56999999998888875 4555443
No 142
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=91.64 E-value=0.54 Score=35.96 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
.+|+.|+++...|+.+ .+.+-.+|++.+. ..++.+.++- ..+|.+++
T Consensus 28 ~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i-----~~~Pt~~~ 80 (109)
T cd03002 28 PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGV-----QGFPTLKV 80 (109)
T ss_pred CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCC-----CcCCEEEE
Confidence 4999999887777654 2445667776532 1345555665 78998864
No 143
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=91.42 E-value=0.41 Score=38.58 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE-e--CCE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF-I--GGR 184 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF-I--~G~ 184 (266)
..|+|++.+ .+|++|+.....+... ...|..+|++.+.+.. .+.++. ....+|.++ + +|+
T Consensus 20 kpVlV~F~a-----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~---~~~~~~---~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 20 KPLMLLIHK-----TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPK---DEEFSP---DGGYIPRILFLDPSGD 88 (117)
T ss_pred CcEEEEEeC-----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCch---hhhccc---CCCccceEEEECCCCC
Confidence 345555432 4999999998887763 4468888887664321 223332 113489874 4 555
Q ss_pred EEc
Q 024534 185 YIG 187 (266)
Q Consensus 185 ~IG 187 (266)
.++
T Consensus 89 ~~~ 91 (117)
T cd02959 89 VHP 91 (117)
T ss_pred Cch
Confidence 544
No 144
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.53 Score=44.78 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=48.7
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCC------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCC
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFR------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGG 183 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G 183 (266)
.+.+|+||+-+ ++|+.|+....+|+++- +..-.+|++.++. +-..+|- .++|.| |++|
T Consensus 42 ~~~PVlV~fWa-----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~----vAaqfgi-----qsIPtV~af~dG 107 (304)
T COG3118 42 REVPVLVDFWA-----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM----VAAQFGV-----QSIPTVYAFKDG 107 (304)
T ss_pred cCCCeEEEecC-----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh----HHHHhCc-----CcCCeEEEeeCC
Confidence 44578888854 79999999999999763 4456777776644 4455665 889987 7999
Q ss_pred EEEcchh
Q 024534 184 RYIGGVE 190 (266)
Q Consensus 184 ~~IGG~d 190 (266)
+.|-|+-
T Consensus 108 qpVdgF~ 114 (304)
T COG3118 108 QPVDGFQ 114 (304)
T ss_pred cCccccC
Confidence 9997774
No 145
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=91.36 E-value=0.58 Score=42.57 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=49.1
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhHH
Q 024534 128 STFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLN 196 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L~ 196 (266)
-.|++|+++.+.|..+++.|...-|++... -++++.+... ..+|.|-+||+.+-..+.+.+..
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~k-p~~f~~~sp~-----~~~P~l~~d~~~~tDs~~Ie~~L 81 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRK-PEWFLDISPG-----GKPPVLKFDEKWVTDSDKIEEFL 81 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCC-cHHHHhhCCC-----CCCCeEEeCCceeccHHHHHHHH
Confidence 369999999999999999876544443322 2577788776 89999999999998888776543
No 146
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=91.34 E-value=0.98 Score=33.95 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE
Q 024534 128 STFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF 180 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF 180 (266)
.+|+.|+.....|..+ .+.+-.+|++.+ .++.+.++- ..+|.++
T Consensus 28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~i-----~~~P~~~ 77 (103)
T cd03001 28 PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH----QSLAQQYGV-----RGFPTIK 77 (103)
T ss_pred CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch----HHHHHHCCC-----CccCEEE
Confidence 5999999988777652 355777887654 345555665 7899774
No 147
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=90.72 E-value=2.5 Score=31.34 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=46.0
Q ss_pred CCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhHHh
Q 024534 124 RVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNE 197 (266)
Q Consensus 124 rgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L~e 197 (266)
.|+....++|-++..+|+-.+++|+..... +.. . .....+|.|..+|+.|+|++.+.+..+
T Consensus 10 ~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~~--------~----sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 10 WGLPSVDPECLAVLAYLKFAGAPLKVVPSN-NPW--------R----SPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCCCcCCHHHHHHHHHHHcCCCCEEEEecC-CCC--------C----CCCCccCEEEECCEEecChHHHHHHHH
Confidence 455556799999999999999999765433 211 0 113679999999999999998887543
No 148
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=90.51 E-value=0.37 Score=35.32 Aligned_cols=40 Identities=30% Similarity=0.706 Sum_probs=22.9
Q ss_pred eeEEcCCCCCcceeEecCC---C---ceecCCccccCceec----CCCCC
Q 024534 223 SFVLCGECDGSHKVYAEKG---G---GFKSCNACNENGLIR----CPSCS 262 (266)
Q Consensus 223 rfv~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLir----Cp~C~ 262 (266)
....|..|+|+-.++.... . ....|+.|+-.|.+. |+.|.
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~ 63 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCK 63 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCC
Confidence 3466888888876654321 1 235888888888775 77663
No 149
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=0.17 Score=49.31 Aligned_cols=48 Identities=33% Similarity=0.740 Sum_probs=38.6
Q ss_pred cccccCce------eeEEcCCCCCcceeEecC--CC--ceecCCccccCcee---cCCCCC
Q 024534 215 VCNICGGY------SFVLCGECDGSHKVYAEK--GG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~------rfv~C~~C~GS~K~~~~~--~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|..|.|. .-+.|+.|+|+-.+.... +. ....|+.||-.|-+ +|+.|.
T Consensus 144 ~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 144 TCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred ECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCC
Confidence 79999988 667799999998776544 21 24799999999987 599994
No 150
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=90.27 E-value=1.3 Score=37.72 Aligned_cols=56 Identities=13% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHhC-------CCcEEEEECCCCHHHHHHHHHHHCCC-CCCCCCccEE--EeCCEEEc
Q 024534 128 STFEDCKAVRSILRGF-------RVQLDERDLSMDSSFLNELQGILGGG-GQSKLTLPRV--FIGGRYIG 187 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~-------gV~~eErDVs~d~~~r~EL~ellg~~-~~~~~tvPqV--FI~G~~IG 187 (266)
.+|+.|+.+...|+.+ ++.+-.+|++.+.+ +.+.++-. ..+..++|.+ |.+|+.++
T Consensus 57 ~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~----la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 57 TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN----VAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH----HHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 4999999888777533 37788899987754 33434420 0011347866 67887664
No 151
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=90.13 E-value=1 Score=33.68 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=30.0
Q ss_pred CCChHHHHHHHHHHhC--------CCcEEEEECCC-CHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILRGF--------RVQLDERDLSM-DSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~--------gV~~eErDVs~-d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
.+|+.|++...+|+.. ++.+-.+|.+. +. .+.+.++- .++|.+++
T Consensus 28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~i-----~~~P~~~~ 81 (105)
T cd02998 28 PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYGV-----SGFPTLKF 81 (105)
T ss_pred CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCCC-----CCcCEEEE
Confidence 4999999887777542 25566777766 43 44444554 78998864
No 152
>PRK10357 putative glutathione S-transferase; Provisional
Probab=89.98 E-value=0.82 Score=39.06 Aligned_cols=64 Identities=8% Similarity=-0.085 Sum_probs=44.3
Q ss_pred EEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe-CCEEEcchhHH
Q 024534 117 VVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI-GGRYIGGVEEV 192 (266)
Q Consensus 117 VIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI-~G~~IGG~del 192 (266)
.+|+.. .++++++|+-+|+.+||+|+.++++.... ..++.++.. ...+|.+.. +|.-|-....+
T Consensus 2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP-----~g~vP~L~~~~g~~l~eS~aI 66 (202)
T PRK10357 2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNP-----LGKVPALVTEEGECWFDSPII 66 (202)
T ss_pred eeecCC------CCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCC-----ccCCCeEEeCCCCeeecHHHH
Confidence 467654 78999999999999999999988865321 134444433 389999985 56555433333
No 153
>PLN02395 glutathione S-transferase
Probab=89.88 E-value=1.2 Score=38.22 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=48.2
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
+.||.. ....+.+|+-+|..+|+.|+.+.|+... ...+++.++.-. .+||.+..+|..|.....+.
T Consensus 3 ~~ly~~-------~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-----g~vP~L~~~~~~l~ES~aI~ 70 (215)
T PLN02395 3 LKVYGP-------AFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-----GVVPVIVDGDYKIFESRAIM 70 (215)
T ss_pred EEEEcC-------CcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-----CCCCEEEECCEEEEcHHHHH
Confidence 567763 2235799999999999999988876431 223566666544 89999998887777666555
Q ss_pred hH
Q 024534 194 QL 195 (266)
Q Consensus 194 ~L 195 (266)
+.
T Consensus 71 ~Y 72 (215)
T PLN02395 71 RY 72 (215)
T ss_pred HH
Confidence 54
No 154
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=89.54 E-value=1.1 Score=33.71 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHhC---------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCEE
Q 024534 128 STFEDCKAVRSILRGF---------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGRY 185 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~---------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~~ 185 (266)
.+|+.|+.....|+.+ .+.+-.+|.+.+. ++.+.++- ..+|.++ -+|+.
T Consensus 26 ~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v-----~~~Pt~~~~~~g~~ 85 (102)
T cd03005 26 PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR----ELCSEFQV-----RGYPTLLLFKDGEK 85 (102)
T ss_pred CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh----hhHhhcCC-----CcCCEEEEEeCCCe
Confidence 4999999877666433 3556677776553 34444554 7899865 46643
No 155
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=89.52 E-value=2.5 Score=37.39 Aligned_cols=81 Identities=10% Similarity=0.240 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCCCCCChHHHHH----HHHHHhCCCcEEEEECCCCH-----HH----HHHHHHHHCCCCCCCCCccEEEe
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAV----RSILRGFRVQLDERDLSMDS-----SF----LNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~v----k~iL~~~gV~~eErDVs~d~-----~~----r~EL~ellg~~~~~~~tvPqVFI 181 (266)
+||+|..+ +|++|++. +++-+++++.+.-++++.+. .+ ...+.+.+|. ....+|..|+
T Consensus 72 ~lV~Fwas------wCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~---~~~~iPttfL 142 (181)
T PRK13728 72 KVVLFMQG------HCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPN---IPVATPTTFL 142 (181)
T ss_pred eEEEEECC------CCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCC---CCCCCCeEEE
Confidence 58888877 99999987 66666778887766665331 01 1334445552 1268999985
Q ss_pred ---CCE-----EEcchhHHHhHHhhccHHHHhhc
Q 024534 182 ---GGR-----YIGGVEEVRQLNETGELKKFVEG 207 (266)
Q Consensus 182 ---~G~-----~IGG~del~~L~esGeL~~lL~~ 207 (266)
+|+ ++|..+ -.++.+ .++++|+.
T Consensus 143 Id~~G~i~~~~~~G~~~-~~~L~~--~I~~ll~~ 173 (181)
T PRK13728 143 VNVNTLEALPLLQGATD-AAGFMA--RMDTVLQM 173 (181)
T ss_pred EeCCCcEEEEEEECCCC-HHHHHH--HHHHHHhh
Confidence 563 345443 233322 35555543
No 156
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=89.46 E-value=1.3 Score=34.36 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCChHHHHHHHHHHhC-----CCcEEEEECC-CCHHHHHHHHHHHCCCCCCCCCccEEE
Q 024534 128 STFEDCKAVRSILRGF-----RVQLDERDLS-MDSSFLNELQGILGGGGQSKLTLPRVF 180 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~-----gV~~eErDVs-~d~~~r~EL~ellg~~~~~~~tvPqVF 180 (266)
.+|+.|+.....|+.+ ++.+-.+|.+ .+ .++.+.++- ..+|.++
T Consensus 28 ~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~----~~l~~~~~V-----~~~PT~~ 77 (100)
T cd02999 28 SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK----PSLLSRYGV-----VGFPTIL 77 (100)
T ss_pred CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC----HHHHHhcCC-----eecCEEE
Confidence 4999999998888655 3556666665 33 355555664 7889774
No 157
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=89.36 E-value=0.76 Score=37.77 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHH----hC--CCcEEEEECCCCHHHH---HHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILR----GF--RVQLDERDLSMDSSFL---NELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~----~~--gV~~eErDVs~d~~~r---~EL~ellg~~~~~~~tvPqVFI 181 (266)
.+|+.|+.+.-+|+ .+ ++.|..+|++....++ .+++...+- . ..+|.+.+
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I---~-~~iPT~~~ 96 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL---T-TGVPTLLR 96 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc---c-cCCCEEEE
Confidence 49999997766554 43 3778899997643222 344443332 1 38998854
No 158
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=0.53 Score=42.14 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE-eCCEEEcchhHHHhHHh
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF-IGGRYIGGVEEVRQLNE 197 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF-I~G~~IGG~del~~L~e 197 (266)
-||+|.+||+++--++|++++.-+..|.+ +-=.++.|. ..||.+. =+|++++---|+....+
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe--~Tp~rmiG~-----KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDE--ETPIRMIGQ-----KQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCcc--cChhhhhcc-----cccceEEccccccchhhhHHHHHHH
Confidence 89999999999999999999877766643 222344565 8999886 57899987777766544
No 159
>PRK10767 chaperone protein DnaJ; Provisional
Probab=89.00 E-value=0.38 Score=46.29 Aligned_cols=63 Identities=27% Similarity=0.628 Sum_probs=41.3
Q ss_pred cHHHHhhcCCCC----CCccccccCceee------EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYSF------VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|++++.+.... ....|..|.|.+. ..|..|+|+-++....+. ....|+.|+-.|.+ +|+.|.
T Consensus 125 sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 125 TLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred ehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCC
Confidence 455555443321 1237888888664 579999999776654321 23589999999876 688884
No 160
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=88.99 E-value=2.9 Score=36.16 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=24.4
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHH--hCCCcEEEEEC
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILR--GFRVQLDERDL 152 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~--~~gV~~eErDV 152 (266)
++..|++|+ -..|++|+++...|+ ..+|.+..+-+
T Consensus 77 ~~~~i~~f~------D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 77 GKRVVYVFT------DPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCEEEEEEE------CCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 345566666 359999999999998 34566555544
No 161
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.93 E-value=3.2 Score=35.70 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=56.2
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcch---h
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGV---E 190 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~---d 190 (266)
-++++|... +|.=|+.-.+.|+..|+++...+.+. ...|++++|-. ..-.+-=...|||.||-|. +
T Consensus 26 ~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gIp-~e~~SCHT~VI~Gy~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRLGIP-YEMQSCHTAVINGYYVEGHVPAE 94 (149)
T ss_pred eeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhcCCC-hhhccccEEEEcCEEEeccCCHH
Confidence 568888854 99999999999999999988877643 46778877741 1234556789999999875 5
Q ss_pred HHHhHHhhcc
Q 024534 191 EVRQLNETGE 200 (266)
Q Consensus 191 el~~L~esGe 200 (266)
++.+|.+++.
T Consensus 95 aI~~ll~~~p 104 (149)
T COG3019 95 AIARLLAEKP 104 (149)
T ss_pred HHHHHHhCCC
Confidence 5555554443
No 162
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=88.90 E-value=1.7 Score=35.80 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=38.7
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHH-HHHh------C--CCcEEEEECCCCHHHHHHHHH----HHCCCCCCCCCccEE
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRS-ILRG------F--RVQLDERDLSMDSSFLNELQG----ILGGGGQSKLTLPRV 179 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~-iL~~------~--gV~~eErDVs~d~~~r~EL~e----llg~~~~~~~tvPqV 179 (266)
...|+|++.+ .+|++|+.+.+ .+.. + ++.+..+|++..++..+.+.+ +.|. ..+|.+
T Consensus 15 ~KpVll~f~a-----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~-----~G~Pt~ 84 (124)
T cd02955 15 DKPIFLSIGY-----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ-----GGWPLN 84 (124)
T ss_pred CCeEEEEEcc-----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC-----CCCCEE
Confidence 3457776653 69999998854 2322 2 344567787766555443333 3343 688887
Q ss_pred Ee---CCEEE
Q 024534 180 FI---GGRYI 186 (266)
Q Consensus 180 FI---~G~~I 186 (266)
.+ +|+.|
T Consensus 85 vfl~~~G~~~ 94 (124)
T cd02955 85 VFLTPDLKPF 94 (124)
T ss_pred EEECCCCCEE
Confidence 54 67776
No 163
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=88.64 E-value=1.6 Score=38.54 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~~I 186 (266)
..|||++. ..+|+.|+.+..+|+.+ .++|..+|++. ..+.++- ..+|.|+ -||+.|
T Consensus 103 ~~VVV~Fy-----a~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~~~~~i-----~~lPTlliyk~G~~v 165 (192)
T cd02988 103 TWVVVHLY-----KDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CIPNYPD-----KNLPTILVYRNGDIV 165 (192)
T ss_pred CEEEEEEE-----CCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hHhhCCC-----CCCCEEEEEECCEEE
Confidence 35666554 36999999998888765 36788888742 1244554 8899874 588755
Q ss_pred c---chhHHHh-HHhhccHHHHhhc
Q 024534 187 G---GVEEVRQ-LNETGELKKFVEG 207 (266)
Q Consensus 187 G---G~del~~-L~esGeL~~lL~~ 207 (266)
+ |+.++-. -....+|..+|..
T Consensus 166 ~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 166 KQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEeCchhhCCCCCCHHHHHHHHHh
Confidence 3 3443321 1122356666654
No 164
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=88.62 E-value=2.2 Score=35.18 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=41.8
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCC------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccE--EEeCC
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFR------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPR--VFIGG 183 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPq--VFI~G 183 (266)
++..|||-++ +.+|+.|+.+-.+|.++- +.|-.+||+..++ +.+.++- ...|. +|-+|
T Consensus 13 ~~klVVVdF~-----a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d----va~~y~I-----~amPtfvffkng 78 (114)
T cd02986 13 AEKVLVLRFG-----RDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV----YTQYFDI-----SYIPSTIFFFNG 78 (114)
T ss_pred CCCEEEEEEe-----CCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH----HHHhcCc-----eeCcEEEEEECC
Confidence 3455666665 579999999988888763 6688899976544 4444443 33444 57789
Q ss_pred EEE
Q 024534 184 RYI 186 (266)
Q Consensus 184 ~~I 186 (266)
+||
T Consensus 79 kh~ 81 (114)
T cd02986 79 QHM 81 (114)
T ss_pred cEE
Confidence 887
No 165
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=88.48 E-value=1.6 Score=32.69 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCE
Q 024534 128 STFEDCKAVRSILRGF--------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGR 184 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~--------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~ 184 (266)
.+|+.|+.+...|... .+.+-.+|++.+. -.++.+.++- ..+|.++ -+|+
T Consensus 27 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i-----~~~Pt~~~~~~g~ 86 (104)
T cd02997 27 PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEYNV-----KGFPTFKYFENGK 86 (104)
T ss_pred CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhCCC-----ccccEEEEEeCCC
Confidence 4999999886555322 2556677877631 1345555564 6788774 4555
No 166
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=88.39 E-value=0.11 Score=46.34 Aligned_cols=86 Identities=17% Similarity=0.409 Sum_probs=61.3
Q ss_pred CccEEEeCCEEEcchhHHHhHHhhccHHHHhhcCCCCCC---ccccccCceeeEEcCCCCCcceeEecCCCceecCCccc
Q 024534 175 TLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAER---GVCNICGGYSFVLCGECDGSHKVYAEKGGGFKSCNACN 251 (266)
Q Consensus 175 tvPqVFI~G~~IGG~del~~L~esGeL~~lL~~~~~~~~---~~C~~Cgg~rfv~C~~C~GS~K~~~~~~~~~~rC~~CN 251 (266)
..|.-+++.-++-...||.++. +|.|.+.|+.+-.... ..|+.|-+.+| .|..|+.+.-+|-=......+|+.|+
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v~-~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~~~IfPF~~~~~~~C~~C~ 179 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQVK-SGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSDDIIFPFQIDTTVRCPKCK 179 (202)
T ss_pred cchhhhhhCCceEcHHHHHHHh-hchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCCCCCCCCCCCCeeeCCcCc
Confidence 5677778887888889998885 6999999987543322 27999999998 79999998555432222568888886
Q ss_pred cCce------ecCCCCC
Q 024534 252 ENGL------IRCPSCS 262 (266)
Q Consensus 252 EnGL------irCp~C~ 262 (266)
--=- ..||-|.
T Consensus 180 ~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 180 SVFHKSCFRKKSCPKCA 196 (202)
T ss_pred cccchhhcCCCCCCCcH
Confidence 4211 4577774
No 167
>PTZ00057 glutathione s-transferase; Provisional
Probab=88.38 E-value=4.6 Score=34.91 Aligned_cols=72 Identities=10% Similarity=0.258 Sum_probs=47.3
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS-SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~-~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
++||+.. .-..++.++-+|+.+||+|+.+.+.... ++. +..+...........+|.+.+||..|.....+..
T Consensus 5 ~~L~y~~------~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 5 IVLYYFD------ARGKAELIRLIFAYLGIEYTDKRFGENGDAFI-EFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred eEEEecC------CCcchHHHHHHHHHcCCCeEEEeccccchHHH-HHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 7788754 5677889999999999999998875432 111 1222110011245899999999987765554444
No 168
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=1.2 Score=38.44 Aligned_cols=59 Identities=10% Similarity=0.024 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHCCCCCCCCCccEEEeCCE-EEcchhHH
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSMDS-SFLNELQGILGGGGQSKLTLPRVFIGGR-YIGGVEEV 192 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~d~-~~r~EL~ellg~~~~~~~tvPqVFI~G~-~IGG~del 192 (266)
..++|.+|+-+|..+|+.|+.+.|+... ....++.++... ..||.+-.+|- .|-....|
T Consensus 8 ~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-----gkVPvL~~~~~~~l~ES~AI 68 (211)
T COG0625 8 TSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-----GKVPALVDDDGEVLTESGAI 68 (211)
T ss_pred CCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-----CCCCEEeeCCCCeeecHHHH
Confidence 5599999999999999999998888764 334666666655 89999988764 34433333
No 169
>PRK14300 chaperone protein DnaJ; Provisional
Probab=88.29 E-value=0.44 Score=46.08 Aligned_cols=63 Identities=25% Similarity=0.625 Sum_probs=42.2
Q ss_pred cHHHHhhcCCCC----CCccccccCcee------eEEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYS------FVLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~r------fv~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|++++.+.... ....|..|.|.+ ...|..|+|+-+++...+. ....|+.|+-.|-+ +|+.|.
T Consensus 128 sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 128 NLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred EHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCC
Confidence 456666554331 123788888765 5779999999877654321 23589999999966 688884
No 170
>PRK14287 chaperone protein DnaJ; Provisional
Probab=87.97 E-value=0.45 Score=46.03 Aligned_cols=48 Identities=29% Similarity=0.809 Sum_probs=35.4
Q ss_pred cccccCcee------eEEcCCCCCcceeEecCCC------ceecCCccccCcee---cCCCCC
Q 024534 215 VCNICGGYS------FVLCGECDGSHKVYAEKGG------GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~r------fv~C~~C~GS~K~~~~~~~------~~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|..|.|.+ -..|..|+|+-.+...... ....|+.|+-.|.+ +|+.|.
T Consensus 140 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 140 TCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred cCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence 788888765 4669999999776543211 13689999999976 688885
No 171
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=87.97 E-value=2.2 Score=36.98 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=40.1
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
+.||.. ..+.+.+|+-+|+.+||+|+.++|+... ....++.++.-. ..||.+..
T Consensus 2 ~~Ly~~-------~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-----gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFA-------PTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-----NKIPAIVD 57 (215)
T ss_pred eEEEEC-------CCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-----CCCCEEEe
Confidence 467764 3478999999999999999988876542 223566666544 89999976
No 172
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=87.89 E-value=1.8 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCC
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSM 154 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~ 154 (266)
|++|+. ..|++|..+...|+.. ++.++.+.+..
T Consensus 1 i~~f~d------~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~ 39 (98)
T cd02972 1 IVEFFD------PLCPYCYLFEPELEKLLYADDGGVRVVYRPFPL 39 (98)
T ss_pred CeEEEC------CCCHhHHhhhHHHHHHHhhcCCcEEEEEecccc
Confidence 456664 4999999998888764 45666666543
No 173
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=87.51 E-value=3.1 Score=31.45 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhHH
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLN 196 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L~ 196 (266)
..+.|.++..+|+..|++|+.+++... .. .. ....+|.|-+||+.|++..-+..+.
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~~-~~-------~~----P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRANA-EF-------MS----PSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCCc-cc-------cC----CCCcccEEEECCEEEeCHHHHHHHH
Confidence 557899999999999999998875321 00 11 1368999999999999877766543
No 174
>PRK14290 chaperone protein DnaJ; Provisional
Probab=87.37 E-value=0.52 Score=45.39 Aligned_cols=49 Identities=31% Similarity=0.898 Sum_probs=34.5
Q ss_pred ccccccCceee-----EEcCCCCCcceeEecCCCc------eecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYSF-----VLCGECDGSHKVYAEKGGG------FKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rf-----v~C~~C~GS~K~~~~~~~~------~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+. ..|+.|+|+-.+...-.-+ ...|+.|+-.|-+ +|+.|.
T Consensus 150 ~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (365)
T PRK14290 150 AMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCN 212 (365)
T ss_pred ccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCC
Confidence 36888877664 5699999997665432212 2589999988844 788884
No 175
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=86.94 E-value=0.51 Score=31.08 Aligned_cols=29 Identities=28% Similarity=0.721 Sum_probs=22.4
Q ss_pred eEEcCCCCCcceeEecC---CCceecCCcccc
Q 024534 224 FVLCGECDGSHKVYAEK---GGGFKSCNACNE 252 (266)
Q Consensus 224 fv~C~~C~GS~K~~~~~---~~~~~rC~~CNE 252 (266)
.+-|+.|+...++-.++ .++.+||+.|.+
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 46799999999887652 336789999975
No 176
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=86.65 E-value=8.6 Score=32.61 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=18.3
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG 142 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~ 142 (266)
+.|+||+.+ .+|+.|++..-.|..
T Consensus 26 k~vlL~FwA-----sWCppCr~e~P~L~~ 49 (146)
T cd03008 26 RVLLLFFGA-----VVSPQCQLFAPKLKD 49 (146)
T ss_pred CEEEEEEEC-----CCChhHHHHHHHHHH
Confidence 457777764 589999998877765
No 177
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=86.59 E-value=4.6 Score=30.19 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHhCCCcEEEEECCCCHH--H-HHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 130 FEDCKAVRSILRGFRVQLDERDLSMDSS--F-LNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 130 C~~C~~vk~iL~~~gV~~eErDVs~d~~--~-r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
-..|.+++-+|+.+|++|+.+.|+.... . .++.............+||.+..||..+.-...+.
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl 75 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAIL 75 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHH
Confidence 3678899999999999999888875321 1 12222111000013479999998887766444443
No 178
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=86.58 E-value=1.6 Score=34.10 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhC-------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGF-------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF 180 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~-------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF 180 (266)
-+|.|+++ +|+.|+++...|+.+ ++.+-.+|++.+. ....++.++. ..+|.++
T Consensus 24 vlv~f~a~------wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v-----~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAP------WCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQL-----KSFPTIL 83 (109)
T ss_pred EEEEEECC------CCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCC-----CcCCEEE
Confidence 35555554 999999998877653 3556677776521 1122333454 7899774
No 179
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=86.54 E-value=3.3 Score=37.59 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHHhC----C--CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCEEE
Q 024534 128 STFEDCKAVRSILRGF----R--VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGRYI 186 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~----g--V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~~I 186 (266)
++|+.|+++...++.+ + +.+..+|++.+ .++.+.++- ..+|.++ -+|+.+
T Consensus 62 pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~----~~l~~~~~I-----~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 62 PWCSHCRKMAPAWERLAKALKGQVNVADLDATRA----LNLAKRFAI-----KGYPTLLLFDKGKMY 119 (224)
T ss_pred CCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc----HHHHHHcCC-----CcCCEEEEEECCEEE
Confidence 5999999998887654 2 45666777654 355666665 7888774 577654
No 180
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.35 E-value=0.43 Score=46.01 Aligned_cols=20 Identities=35% Similarity=0.901 Sum_probs=14.2
Q ss_pred cccccCceeeEEcCCCCCcc
Q 024534 215 VCNICGGYSFVLCGECDGSH 234 (266)
Q Consensus 215 ~C~~Cgg~rfv~C~~C~GS~ 234 (266)
.|.+|-|.+-+.|..|||+-
T Consensus 189 ~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 189 FCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhcccCCCceeccCcCCCC
Confidence 57777777777777777765
No 181
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=86.23 E-value=2.1 Score=32.90 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=34.0
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC-------C--CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE-eCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF-------R--VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF-IGG 183 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-------g--V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF-I~G 183 (266)
+.|+|++.+ .+|+.|++....|+.+ + +.+...|++... ++.+.++- .++|.++ ++|
T Consensus 16 ~~vlv~f~a-----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~I-----~~~Pt~~l~~~ 81 (104)
T cd03000 16 DIWLVDFYA-----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS----SIASEFGV-----RGYPTIKLLKG 81 (104)
T ss_pred CeEEEEEEC-----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH----hHHhhcCC-----ccccEEEEEcC
Confidence 345555543 5999999777666432 2 445566775543 44455554 7889884 444
No 182
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=86.10 E-value=4.9 Score=34.17 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=33.4
Q ss_pred CCCChHHHHHHHHHHhCC------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE-Ee-CCE
Q 024534 127 RSTFEDCKAVRSILRGFR------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV-FI-GGR 184 (266)
Q Consensus 127 R~tC~~C~~vk~iL~~~g------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV-FI-~G~ 184 (266)
+.+|+.|+.+-.+|+++. +.|..+||+..+ ++.+.++- ...+|.+ |. +|+
T Consensus 32 A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~----dla~~y~I----~~~~t~~~ffk~g~ 89 (142)
T PLN00410 32 HDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP----DFNTMYEL----YDPCTVMFFFRNKH 89 (142)
T ss_pred CCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH----HHHHHcCc----cCCCcEEEEEECCe
Confidence 469999999988888653 446789998764 45555554 1345666 44 554
No 183
>PRK11752 putative S-transferase; Provisional
Probab=85.94 E-value=3.2 Score=37.84 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=49.3
Q ss_pred CCCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCC--HHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 110 PGADQRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMD--SSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 110 p~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d--~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
+.+.+.+.||+. .+++|.+|+-+|+.+ |+.|+.+.|+.. .....|+.++.-. .+||.+..
T Consensus 39 ~~~~~~~~Ly~~-------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-----GkVP~Lv~ 106 (264)
T PRK11752 39 PVGKHPLQLYSL-------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-----SKIPALLD 106 (264)
T ss_pred CCCCCCeEEecC-------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-----CCCCEEEe
Confidence 345567999974 589999999999986 888887776542 2223566665544 89999977
Q ss_pred CC----EEEcchhHHHh
Q 024534 182 GG----RYIGGVEEVRQ 194 (266)
Q Consensus 182 ~G----~~IGG~del~~ 194 (266)
++ ..|-....|.+
T Consensus 107 ~dg~~~~~L~ES~AIl~ 123 (264)
T PRK11752 107 RSGNPPIRVFESGAILL 123 (264)
T ss_pred CCCCCCeEEEcHHHHHH
Confidence 53 34544444443
No 184
>PRK14284 chaperone protein DnaJ; Provisional
Probab=85.58 E-value=0.81 Score=44.54 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=34.1
Q ss_pred ccccccCceee------EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYSF------VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+. ..|..|+|+-.++...+. ....|+.|+-.|-+ .|+.|.
T Consensus 159 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 159 KSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred ccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCC
Confidence 37888877664 569999999766543321 23689999888865 588774
No 185
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=85.53 E-value=2.2 Score=31.89 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCC--------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFR--------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~g--------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
-+|.|+++ +|+.|+.....|+... +.+..+|++.+ ++....+. ..+|.+++
T Consensus 21 ~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~-----~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAP------WCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVV-----DGFPTILF 79 (104)
T ss_pred EEEEEECC------CCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccC-----CCCCEEEE
Confidence 34555544 9999998877776442 45566777543 23333443 78898754
No 186
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=84.78 E-value=0.74 Score=43.40 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=52.0
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS-SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~-~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
.|+|.-. ..-+.++|+..+..+||.++++||+.-. +..+-+.-+++- ...||++--+...|-.++++.+
T Consensus 27 ~vLyhhp------ysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp----~gevPVl~~g~~II~d~tqIId 96 (325)
T KOG4420|consen 27 LVLYHHP------YSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNP----GGEVPVLIHGDNIISDYTQIID 96 (325)
T ss_pred ceeeecC------cccccceeeeehhhcccccceeeccCccccccCchheecCC----CCCCceEecCCeecccHHHHHH
Confidence 8889854 6778899999999999999999998531 122222222332 4788875555566688998888
Q ss_pred HHhh
Q 024534 195 LNET 198 (266)
Q Consensus 195 L~es 198 (266)
..|+
T Consensus 97 YvEr 100 (325)
T KOG4420|consen 97 YVER 100 (325)
T ss_pred HHHH
Confidence 8775
No 187
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=84.74 E-value=0.8 Score=43.74 Aligned_cols=49 Identities=29% Similarity=0.768 Sum_probs=34.0
Q ss_pred ccccccCcee------eEEcCCCCCcceeEecCCC------ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYS------FVLCGECDGSHKVYAEKGG------GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~r------fv~C~~C~GS~K~~~~~~~------~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+ ...|..|+|+-.++....- ....|+.|+-.|.+ .|+.|.
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (354)
T TIGR02349 144 ESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCK 207 (354)
T ss_pred CcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCC
Confidence 3788888766 5669999998766543220 13588888888865 588774
No 188
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=5.1 Score=36.83 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=46.3
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCc--EEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEE-c---
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQ--LDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYI-G--- 187 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~--~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~I-G--- 187 (266)
-.|.||+ -+||-.|...-+.|+++|+- ++.+|-+.-.. ..++. ..-++|.||+||+.+ +
T Consensus 11 ~~VkI~~------HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~-------~V~SvP~Vf~DGel~~~dpV 75 (265)
T COG5494 11 MEVKIFT------HKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK-------GVISVPSVFIDGELVYADPV 75 (265)
T ss_pred eEEEEEE------ecchHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc-------ceeecceEEEcCeEEEcCCC
Confidence 4688998 45999999999999998863 55555543211 12111 247999999999976 3
Q ss_pred chhHHHhHH
Q 024534 188 GVEEVRQLN 196 (266)
Q Consensus 188 G~del~~L~ 196 (266)
..+++..+.
T Consensus 76 dp~~ies~~ 84 (265)
T COG5494 76 DPEEIESIL 84 (265)
T ss_pred CHHHHHHHH
Confidence 345555554
No 189
>PRK14285 chaperone protein DnaJ; Provisional
Probab=84.20 E-value=0.99 Score=43.56 Aligned_cols=49 Identities=35% Similarity=0.731 Sum_probs=33.6
Q ss_pred ccccccCceee------EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYSF------VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+. ..|..|+|+-.+....+. ....|+.|+-.|-+ +|+.|.
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 147 MLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred ccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCC
Confidence 36888877763 569999998776643221 13588888888865 577774
No 190
>PRK14295 chaperone protein DnaJ; Provisional
Probab=84.16 E-value=0.91 Score=44.22 Aligned_cols=49 Identities=33% Similarity=0.803 Sum_probs=34.1
Q ss_pred ccccccCceee------EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYSF------VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+. ..|..|+|+-.+....+. ...+|+.|+-.|.+ +|+.|.
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCK 226 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCC
Confidence 36888877664 569999998776654331 13588888888866 577774
No 191
>PRK14286 chaperone protein DnaJ; Provisional
Probab=84.00 E-value=0.92 Score=43.91 Aligned_cols=63 Identities=24% Similarity=0.556 Sum_probs=38.1
Q ss_pred cHHHHhhcCCCC----CCccccccCceee------EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYSF------VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|++++.+.... ....|..|.|.+. ..|..|+|+-.+....+. ....|+.|+--|.+ +|+.|.
T Consensus 133 tLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (372)
T PRK14286 133 SLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCG 210 (372)
T ss_pred EHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCC
Confidence 455555443321 1236888888664 568888888766543221 12478888877754 577773
No 192
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=83.88 E-value=4.3 Score=41.54 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHH-------Hh-CCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSIL-------RG-FRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL-------~~-~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
+.|+|++++ .+|..|+..+... +. .++.+..+|++.+.....++.+.++. ..+|.+++
T Consensus 475 K~VlVdF~A-----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v-----~g~Pt~~~ 540 (571)
T PRK00293 475 KPVMLDLYA-----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV-----LGLPTILF 540 (571)
T ss_pred CcEEEEEEC-----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC-----CCCCEEEE
Confidence 457766654 6999999876542 11 24667788998654434566677775 78898854
No 193
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=83.87 E-value=3.3 Score=33.38 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCC------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCE
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFR------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGR 184 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~g------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~ 184 (266)
||.|+.+ +|+.|+.+...|+.+. +.+-.+|++.+... ..+.++- .++|.| |.+|+
T Consensus 33 lV~FyA~------WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I-----~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAP------WDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHF-----FYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECC------CCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCC-----cccCEEEEEECCc
Confidence 5555554 9999999988887653 55677888765322 2234443 567766 56765
No 194
>PRK14289 chaperone protein DnaJ; Provisional
Probab=83.75 E-value=0.83 Score=44.27 Aligned_cols=63 Identities=30% Similarity=0.666 Sum_probs=40.7
Q ss_pred cHHHHhhcCCCC----CCccccccCceee------EEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYSF------VLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPS 260 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~ 260 (266)
.|++++.+.... ....|..|.|.+. ..|..|+|+-+++.... + ....|+.|+-.|-+ +|+.
T Consensus 137 sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 216 (386)
T PRK14289 137 NLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKK 216 (386)
T ss_pred EHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCC
Confidence 355555543321 1237888877664 67999999987765321 1 13589999998865 7888
Q ss_pred CC
Q 024534 261 CS 262 (266)
Q Consensus 261 C~ 262 (266)
|.
T Consensus 217 C~ 218 (386)
T PRK14289 217 CG 218 (386)
T ss_pred CC
Confidence 84
No 195
>PRK10542 glutathionine S-transferase; Provisional
Probab=83.65 E-value=3.3 Score=35.12 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhCCCcEEEEECCCCHH---HHHHHHHHHCCCCCCCCCccEEEe-CCEEEcchhHHHh
Q 024534 131 EDCKAVRSILRGFRVQLDERDLSMDSS---FLNELQGILGGGGQSKLTLPRVFI-GGRYIGGVEEVRQ 194 (266)
Q Consensus 131 ~~C~~vk~iL~~~gV~~eErDVs~d~~---~r~EL~ellg~~~~~~~tvPqVFI-~G~~IGG~del~~ 194 (266)
..+.+++-+|+.+||+|+.+.|+.... ..+++.++.-. ..+|.+-+ ||..|-.-..+.+
T Consensus 9 s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-----g~vPvL~~~~g~~l~eS~aI~~ 71 (201)
T PRK10542 9 ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-----GQVPALLLDDGTLLTEGVAIMQ 71 (201)
T ss_pred HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-----CCCCeEEeCCCcEeecHHHHHH
Confidence 357788999999999999887765321 12456665544 89999987 5666665544444
No 196
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=83.58 E-value=1.2 Score=47.71 Aligned_cols=50 Identities=26% Similarity=0.589 Sum_probs=34.9
Q ss_pred EEEcchhHHHhHHhhccHHHHhhcCCC------CCCccccccCceee------------EEcCCCCCcc
Q 024534 184 RYIGGVEEVRQLNETGELKKFVEGLPA------AERGVCNICGGYSF------------VLCGECDGSH 234 (266)
Q Consensus 184 ~~IGG~del~~L~esGeL~~lL~~~~~------~~~~~C~~Cgg~rf------------v~C~~C~GS~ 234 (266)
.|+|-+|++++|..+-. +...+++.+ .+++.|+.|+|.++ |+|+.|+|.+
T Consensus 696 TYtg~Fd~IR~lFA~tp-eAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkR 763 (935)
T COG0178 696 TYTGVFDDIRELFAGTP-EAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKR 763 (935)
T ss_pred chhcchHHHHHHHhcCh-HHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcc
Confidence 47788999999986433 233334332 22468999999875 6799999986
No 197
>PRK14291 chaperone protein DnaJ; Provisional
Probab=83.40 E-value=1.1 Score=43.54 Aligned_cols=63 Identities=27% Similarity=0.684 Sum_probs=41.5
Q ss_pred cHHHHhhcCCCC----CCccccccCcee------eEEcCCCCCcceeEecCCC--ceecCCccccCcee--cCCCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYS------FVLCGECDGSHKVYAEKGG--GFKSCNACNENGLI--RCPSCS 262 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~r------fv~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi--rCp~C~ 262 (266)
.|++++.+.... ....|..|.|.+ ...|..|+|+-.++...+. ....|+.|+--|.+ .|+.|.
T Consensus 139 sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~ 215 (382)
T PRK14291 139 SLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCN 215 (382)
T ss_pred EHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCC
Confidence 456666543321 123799998866 4679999999877655321 12589999999955 577774
No 198
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=83.21 E-value=1.4 Score=32.20 Aligned_cols=36 Identities=36% Similarity=0.913 Sum_probs=24.8
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCc
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENG 254 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnG 254 (266)
..|..|.|.+++ +|+.|+|+-+++ ++ .+|..|+-+|
T Consensus 16 ~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----~~C~~C~G~g 66 (66)
T PF00684_consen 16 KTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----DPCKTCKGSG 66 (66)
T ss_dssp EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----SB-SSSTTSS
T ss_pred cCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----CCCCCCCCcC
Confidence 479999887766 499999999888 33 4699998665
No 199
>PRK14282 chaperone protein DnaJ; Provisional
Probab=83.17 E-value=1 Score=43.41 Aligned_cols=49 Identities=33% Similarity=0.931 Sum_probs=34.5
Q ss_pred ccccccCcee------eEEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYS------FVLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~r------fv~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+ ...|..|+|+-.++.... + ....|+.|+-.|.+ +|+.|.
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 216 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECG 216 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCC
Confidence 3688887765 457999999977654321 1 13589999988866 577774
No 200
>PRK14294 chaperone protein DnaJ; Provisional
Probab=83.17 E-value=1.2 Score=43.00 Aligned_cols=48 Identities=29% Similarity=0.711 Sum_probs=33.5
Q ss_pred cccccCceee------EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 215 VCNICGGYSF------VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|..|.|.+. ..|..|+|.-.+....+. ....|+.|+-.|-+ .|+.|.
T Consensus 146 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (366)
T PRK14294 146 TCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCH 204 (366)
T ss_pred cCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCC
Confidence 6888887664 569999999766543221 13588888888865 677774
No 201
>PRK14298 chaperone protein DnaJ; Provisional
Probab=83.11 E-value=1.1 Score=43.58 Aligned_cols=49 Identities=31% Similarity=0.840 Sum_probs=35.1
Q ss_pred ccccccCceee------EEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYSF------VLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+. ..|..|+|+-.++.... + ....|+.|+-.|-+ +|+.|.
T Consensus 142 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (377)
T PRK14298 142 ERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCS 205 (377)
T ss_pred ccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCC
Confidence 37999988765 66999999977654321 1 13589999988854 688884
No 202
>PRK14288 chaperone protein DnaJ; Provisional
Probab=82.87 E-value=1.1 Score=43.38 Aligned_cols=48 Identities=33% Similarity=0.851 Sum_probs=32.4
Q ss_pred cccccCceee-----EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 215 VCNICGGYSF-----VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~rf-----v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|..|.|.+. ..|..|+|+-.+....+. ....|+.|+-.|.+ .|+.|.
T Consensus 142 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 199 (369)
T PRK14288 142 VCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACK 199 (369)
T ss_pred cCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCC
Confidence 6888888663 458888888766544321 12578888888854 577773
No 203
>PF13728 TraF: F plasmid transfer operon protein
Probab=82.22 E-value=4.5 Score=36.26 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHH----hCCCcEEEEECCCC--HHH-----HHHHHHHHCCCCCCCCCccEE
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILR----GFRVQLDERDLSMD--SSF-----LNELQGILGGGGQSKLTLPRV 179 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~----~~gV~~eErDVs~d--~~~-----r~EL~ellg~~~~~~~tvPqV 179 (266)
..+-.+++|+.+ +|++|+....+|+ .+|+.+..++++.. +.+ -..+.+.+|- ..+|.+
T Consensus 119 a~~~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-----~~~Pal 187 (215)
T PF13728_consen 119 AQKYGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-----KVTPAL 187 (215)
T ss_pred hhCeEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC-----CcCCEE
Confidence 345568888766 9999998777776 45788877777621 111 1445556665 799999
Q ss_pred Ee
Q 024534 180 FI 181 (266)
Q Consensus 180 FI 181 (266)
|+
T Consensus 188 ~L 189 (215)
T PF13728_consen 188 FL 189 (215)
T ss_pred EE
Confidence 86
No 204
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=82.21 E-value=6.9 Score=28.71 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHHCCCCCCCCCccEEEeC-CEEEcchhHHHh
Q 024534 132 DCKAVRSILRGFRVQLDERDLSMD--SSFLNELQGILGGGGQSKLTLPRVFIG-GRYIGGVEEVRQ 194 (266)
Q Consensus 132 ~C~~vk~iL~~~gV~~eErDVs~d--~~~r~EL~ellg~~~~~~~tvPqVFI~-G~~IGG~del~~ 194 (266)
.+..++.+|+..|++|+.+.++.+ ....+++.+..-. ...+|.+-++ |..|-.--.+.+
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~----~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPM----FGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTT----SSSSSEEEETTTEEEESHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccc----cceeeEEEECCCCEEEcHHHHHH
Confidence 889999999999999998777642 2333666665432 1789999999 888765544443
No 205
>PRK14301 chaperone protein DnaJ; Provisional
Probab=82.19 E-value=1.2 Score=43.21 Aligned_cols=49 Identities=33% Similarity=0.762 Sum_probs=32.7
Q ss_pred ccccccCceee------EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYSF------VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+. ..|..|+|+-.+....+. ....|+.|+-.|-+ +|+.|.
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCK 204 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCC
Confidence 36888877664 568888888766543221 13578888888754 677774
No 206
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=82.06 E-value=2.1 Score=40.33 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=50.3
Q ss_pred CCcEEEEEEc-CCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 113 DQRVVVYFTS-LRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 113 ~~kVVIYttS-LrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
.+-|.+|.-. .+.+-.-.|+|-++.-+|+..+|+|+.++-++ +.+. +..++|-|-.||++|-+-+-
T Consensus 43 kD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rS-----r~G~lPFIELNGe~iaDS~~ 109 (281)
T KOG4244|consen 43 KDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRS-----RNGTLPFIELNGEHIADSDL 109 (281)
T ss_pred cCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc--------eeec-----cCCCcceEEeCCeeccccHH
Confidence 3557777654 11122236899999999999999999998754 1222 24899999999999999886
Q ss_pred HH
Q 024534 192 VR 193 (266)
Q Consensus 192 l~ 193 (266)
+.
T Consensus 110 I~ 111 (281)
T KOG4244|consen 110 IE 111 (281)
T ss_pred HH
Confidence 64
No 207
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=81.96 E-value=10 Score=34.75 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=57.4
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH--
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE-- 191 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de-- 191 (266)
++=|.|.=.-.+...+=+|-++++..|+.+|+.+.+++++..+. +++...+.. .|.-||||-..
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~--~~Ie~~l~~------------~d~IyVgGGNTF~ 97 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL--AAIENKLMK------------ADIIYVGGGNTFN 97 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH--HHHHHhhhh------------ccEEEECCchHHH
Confidence 33444544446667777899999999999999999999987654 677776665 35678888765
Q ss_pred -HHhHHhhccHHHHhhc
Q 024534 192 -VRQLNETGELKKFVEG 207 (266)
Q Consensus 192 -l~~L~esGeL~~lL~~ 207 (266)
++.|.|.|.++-+.+.
T Consensus 98 LL~~lke~gld~iIr~~ 114 (224)
T COG3340 98 LLQELKETGLDDIIRER 114 (224)
T ss_pred HHHHHHHhCcHHHHHHH
Confidence 4567777766555543
No 208
>PRK14292 chaperone protein DnaJ; Provisional
Probab=81.96 E-value=1.2 Score=42.91 Aligned_cols=49 Identities=31% Similarity=0.680 Sum_probs=35.5
Q ss_pred ccccccCcee-------eEEcCCCCCcceeEecCC--Cc----eecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYS-------FVLCGECDGSHKVYAEKG--GG----FKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~r-------fv~C~~C~GS~K~~~~~~--~~----~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+ ...|..|+|+-.+...-. .+ ...|+.|+-.|.+ +|+.|.
T Consensus 140 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (371)
T PRK14292 140 TECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCR 204 (371)
T ss_pred ecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCC
Confidence 3799998865 467999999977653321 01 3589999999976 788884
No 209
>PRK14296 chaperone protein DnaJ; Provisional
Probab=81.93 E-value=1.2 Score=43.02 Aligned_cols=48 Identities=35% Similarity=0.858 Sum_probs=33.6
Q ss_pred cccccCceee------EEcCCCCCcceeEecCCCc------eecCCccccCcee---cCCCCC
Q 024534 215 VCNICGGYSF------VLCGECDGSHKVYAEKGGG------FKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~~------~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|..|.|.+. ..|..|+|+-.++.....+ ...|+.|+--|-+ +|+.|.
T Consensus 151 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~ 213 (372)
T PRK14296 151 NCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCK 213 (372)
T ss_pred ccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCC
Confidence 6888888764 4699999997665432111 2479999888865 488874
No 210
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=81.76 E-value=3.4 Score=32.83 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHHhCC---------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILRGFR---------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~g---------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
.+|+.|+.....++... +.+-.+|++.+. -.++.+.++- ..+|++++
T Consensus 29 ~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i-----~~~Pt~~l 84 (114)
T cd02992 29 SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGV-----TGYPTLRY 84 (114)
T ss_pred CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCC-----CCCCEEEE
Confidence 49999998877776532 444555654332 1455555554 78898854
No 211
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=81.76 E-value=7.1 Score=30.97 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC---------CCcEEEEECCCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF---------RVQLDERDLSMD 155 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~---------gV~~eErDVs~d 155 (266)
+.|+||+.+ .+|+.|++....|..+ ++.+.-++++.+
T Consensus 19 k~vll~Fwa-----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 19 KTVGLYFSA-----SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred cEEEEEEEC-----CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 346666643 4999999776665432 455555565544
No 212
>PRK14280 chaperone protein DnaJ; Provisional
Probab=81.71 E-value=1.3 Score=42.80 Aligned_cols=49 Identities=33% Similarity=0.828 Sum_probs=33.9
Q ss_pred ccccccCcee------eEEcCCCCCcceeEecCCC------ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYS------FVLCGECDGSHKVYAEKGG------GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~r------fv~C~~C~GS~K~~~~~~~------~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+ ...|..|+|+-.+...... ....|+.|+-.|.+ +|+.|.
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (376)
T PRK14280 144 ETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCH 207 (376)
T ss_pred ccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCC
Confidence 3788888876 4569999998766543211 13588888888865 588774
No 213
>PRK14293 chaperone protein DnaJ; Provisional
Probab=81.48 E-value=1.5 Score=42.45 Aligned_cols=63 Identities=24% Similarity=0.648 Sum_probs=40.7
Q ss_pred cHHHHhhcCCCC----CCccccccCceee------EEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYSF------VLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPS 260 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~ 260 (266)
.|++++.+.... ....|..|.|.+. ..|..|+|.-.+..... + ...+|..|+-.|-+ +|..
T Consensus 126 sLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 205 (374)
T PRK14293 126 DFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDA 205 (374)
T ss_pred eHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCC
Confidence 455555543321 1237888877554 56999999987654321 1 13689999999977 6777
Q ss_pred CC
Q 024534 261 CS 262 (266)
Q Consensus 261 C~ 262 (266)
|.
T Consensus 206 C~ 207 (374)
T PRK14293 206 CG 207 (374)
T ss_pred CC
Confidence 74
No 214
>PRK14283 chaperone protein DnaJ; Provisional
Probab=81.45 E-value=1.6 Score=42.24 Aligned_cols=63 Identities=25% Similarity=0.693 Sum_probs=41.6
Q ss_pred cHHHHhhcCCCC----CCccccccCcee------eEEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYS------FVLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPS 260 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~r------fv~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~ 260 (266)
.|++++.+.... ....|..|.|.+ ...|..|+|+-.+..... + ....|+.|+-.|.+ .|..
T Consensus 129 sLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 208 (378)
T PRK14283 129 TLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSN 208 (378)
T ss_pred eHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCC
Confidence 466666554431 123688887754 456999999987754321 1 23689999999976 7888
Q ss_pred CC
Q 024534 261 CS 262 (266)
Q Consensus 261 C~ 262 (266)
|.
T Consensus 209 C~ 210 (378)
T PRK14283 209 CH 210 (378)
T ss_pred CC
Confidence 84
No 215
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=81.09 E-value=1.4 Score=43.56 Aligned_cols=48 Identities=35% Similarity=0.776 Sum_probs=31.8
Q ss_pred cccccCceee-----EEcCCCCCcceeEecC-CC-----ceecCCccccCcee-----cCCCCC
Q 024534 215 VCNICGGYSF-----VLCGECDGSHKVYAEK-GG-----GFKSCNACNENGLI-----RCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~rf-----v~C~~C~GS~K~~~~~-~~-----~~~rC~~CNEnGLi-----rCp~C~ 262 (266)
.|..|.|.+. ..|..|+|+-.++... .+ ....|+.|+-.|-+ +|+.|.
T Consensus 152 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~ 215 (421)
T PTZ00037 152 ICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCS 215 (421)
T ss_pred cccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence 6888876653 4699999986543321 11 12478888888875 488884
No 216
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=81.05 E-value=0.78 Score=38.01 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=28.1
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHH----hC-CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILR----GF-RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~----~~-gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
++-.|+|++.+ +|+||....-+|. .. ++.+..+..+.+. +.+.+.+. .+...+|.++|
T Consensus 41 ~~~~ilvi~e~------WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~---el~~~~lt---~g~~~IP~~I~ 103 (129)
T PF14595_consen 41 KPYNILVITET------WCGDCARNVPVLAKIAEANPNIEVRIILRDENK---ELMDQYLT---NGGRSIPTFIF 103 (129)
T ss_dssp S-EEEEEE--T------T-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHH---HHTTTTTT----SS--SSEEEE
T ss_pred CCcEEEEEECC------CchhHHHHHHHHHHHHHhCCCCeEEEEEecCCh---hHHHHHHh---CCCeecCEEEE
Confidence 44578999877 9999997655554 43 5555554432222 22222221 24589999865
No 217
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=81.01 E-value=8.8 Score=31.29 Aligned_cols=69 Identities=28% Similarity=0.580 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhHHhhccHHHHhhcCCCCCCccccccCceeeEEcCCCCCcc-eeE
Q 024534 159 LNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLPAAERGVCNICGGYSFVLCGECDGSH-KVY 237 (266)
Q Consensus 159 r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L~esGeL~~lL~~~~~~~~~~C~~Cgg~rfv~C~~C~GS~-K~~ 237 (266)
.+.|..-+|..+.-... -++.|+|++- .++++. .|++++ ..||.|..|+-.- +..
T Consensus 39 ~kyl~~ELgt~g~id~~-~rlii~G~~~--~~~i~~-----~l~~yI----------------~~yVlC~~C~spdT~l~ 94 (110)
T smart00653 39 LKFLLAELGTQGSIDGK-GRLIVNGRFT--PKKLQD-----LLRRYI----------------KEYVLCPECGSPDTELI 94 (110)
T ss_pred HHHHHHHhCCceeECCC-CeEEEEEeeC--HHHHHH-----HHHHHH----------------HhcEECCCCCCCCcEEE
Confidence 45555556642211122 5777777762 233322 355555 3599999998874 334
Q ss_pred ecCCCceecCCccc
Q 024534 238 AEKGGGFKSCNACN 251 (266)
Q Consensus 238 ~~~~~~~~rC~~CN 251 (266)
.++..-+++|.+|.
T Consensus 95 k~~r~~~l~C~aCG 108 (110)
T smart00653 95 KENRLFFLKCEACG 108 (110)
T ss_pred EeCCeEEEEccccC
Confidence 44433579999996
No 218
>PRK14276 chaperone protein DnaJ; Provisional
Probab=80.85 E-value=1.4 Score=42.72 Aligned_cols=49 Identities=31% Similarity=0.839 Sum_probs=33.0
Q ss_pred ccccccCceee------EEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYSF------VLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+. ..|..|+|+-.+..... + ....|+.|+-.|-+ +|+.|.
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (380)
T PRK14276 147 ATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCH 210 (380)
T ss_pred ccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCC
Confidence 37888888764 56999999876654321 0 13578888888754 577773
No 219
>PRK14278 chaperone protein DnaJ; Provisional
Probab=80.45 E-value=1.7 Score=42.18 Aligned_cols=48 Identities=29% Similarity=0.775 Sum_probs=32.7
Q ss_pred cccccCcee------eEEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCCCC
Q 024534 215 VCNICGGYS------FVLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~r------fv~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~C~ 262 (266)
.|..|.|.+ ...|..|+|+-.+..... + ....|+.|+-.|-+ +|+.|.
T Consensus 141 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 203 (378)
T PRK14278 141 LCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECA 203 (378)
T ss_pred cCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCC
Confidence 788887765 356999999876654321 1 13578888888854 587774
No 220
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=80.10 E-value=10 Score=33.84 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=22.3
Q ss_pred eeeEEcCCCCCcc-eeEecCCCceecCCccccCce
Q 024534 222 YSFVLCGECDGSH-KVYAEKGGGFKSCNACNENGL 255 (266)
Q Consensus 222 ~rfv~C~~C~GS~-K~~~~~~~~~~rC~~CNEnGL 255 (266)
..||.|..|+-.- ++..++..-+++|.+|..-+-
T Consensus 96 ~~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~~ 130 (201)
T PRK12336 96 DEYVICSECGLPDTRLVKEDRVLMLRCDACGAHRP 130 (201)
T ss_pred HheEECCCCCCCCcEEEEcCCeEEEEcccCCCCcc
Confidence 3489999997764 333343324789999976543
No 221
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=79.76 E-value=11 Score=30.53 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=46.7
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe--CC
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI--GG 183 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI--~G 183 (266)
.+..|+||-=| .+|+-...|.+-|+++ .+++..+||-.++..-+++.+.+|- .-.=||+++ ||
T Consensus 18 ~~~~~~iFKHS-----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V----~HeSPQ~ili~~g 88 (105)
T PF11009_consen 18 KEKPVLIFKHS-----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGV----KHESPQVILIKNG 88 (105)
T ss_dssp --SEEEEEEE------TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT--------SSEEEEEETT
T ss_pred ccCcEEEEEeC-----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCC----CcCCCcEEEEECC
Confidence 45679999877 3599999888877754 2889999999998888999999995 467899864 88
Q ss_pred EEEc
Q 024534 184 RYIG 187 (266)
Q Consensus 184 ~~IG 187 (266)
+.|-
T Consensus 89 ~~v~ 92 (105)
T PF11009_consen 89 KVVW 92 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 222
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.75 E-value=3.6 Score=36.96 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=46.3
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCC--C-HHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchh
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSM--D-SSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVE 190 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~--d-~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~d 190 (266)
.+-++|+. .|..|.| +||-.|.-++|.|+.+-|+. + ..+-.|+++..-. .+||.+.|||..|-.--
T Consensus 4 ~KpiLYSY----WrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-----~kVP~L~i~g~tl~eS~ 72 (217)
T KOG0868|consen 4 AKPILYSY----WRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-----EKVPTLVIDGLTLTESL 72 (217)
T ss_pred ccchhhhh----hcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-----hhCCeEEECCEEeehHH
Confidence 35567754 3556765 66666777777776665543 2 3344577777665 89999999999886544
Q ss_pred HHHh
Q 024534 191 EVRQ 194 (266)
Q Consensus 191 el~~ 194 (266)
.+.+
T Consensus 73 AII~ 76 (217)
T KOG0868|consen 73 AIIE 76 (217)
T ss_pred HHHH
Confidence 4443
No 223
>PRK14296 chaperone protein DnaJ; Provisional
Probab=79.53 E-value=1.5 Score=42.40 Aligned_cols=36 Identities=33% Similarity=0.855 Sum_probs=28.4
Q ss_pred cccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 215 VCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 215 ~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
.|..|+|.+.+ .|+.|+|.-++.. ..|..|+-.|.+
T Consensus 168 ~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 218 (372)
T PRK14296 168 ICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------NKCKNCKGKGKY 218 (372)
T ss_pred cCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------ccccCCCCceEE
Confidence 69999888654 6999999987752 359999988865
No 224
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=79.45 E-value=4.8 Score=30.26 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=31.8
Q ss_pred CCChHHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILRGF------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
.+|+.|+.++.+|+.. .+.|-.+|++.. .++.+.+|- ....+|.|.+
T Consensus 22 ~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~----~~~~~~~~i---~~~~~P~~~~ 74 (103)
T cd02982 22 KDDSESEELRERFKEVAKKFKGKLLFVVVDADDF----GRHLEYFGL---KEEDLPVIAI 74 (103)
T ss_pred CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh----HHHHHHcCC---ChhhCCEEEE
Confidence 4899999999988864 255677777543 345555665 1238999864
No 225
>PRK14297 chaperone protein DnaJ; Provisional
Probab=79.26 E-value=1.8 Score=42.01 Aligned_cols=49 Identities=24% Similarity=0.814 Sum_probs=34.6
Q ss_pred ccccccCceee------EEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCCCC
Q 024534 214 GVCNICGGYSF------VLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~C~ 262 (266)
..|..|.|.+. ..|..|+|+-++..... + ...+|+.|+-.|.+ +|+.|.
T Consensus 149 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (380)
T PRK14297 149 ENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCH 212 (380)
T ss_pred ccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCC
Confidence 37888888664 56999999976654321 1 23689999988866 688874
No 226
>PRK14280 chaperone protein DnaJ; Provisional
Probab=79.01 E-value=2 Score=41.60 Aligned_cols=37 Identities=30% Similarity=0.847 Sum_probs=29.1
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..|..|+|.+.+ +|..|+|.-+++. ..|..|+-.|.+
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 212 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------EKCPTCHGKGKV 212 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------CCCCCCCCceEE
Confidence 379999998654 6999999977642 459999988876
No 227
>PRK14288 chaperone protein DnaJ; Provisional
Probab=78.98 E-value=1.8 Score=41.82 Aligned_cols=37 Identities=35% Similarity=0.879 Sum_probs=27.6
Q ss_pred ccccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 214 GVCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 214 ~~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..|..|+|.+.+ +|..|+|.-++.. ..|..|+-.|.+
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 204 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------TPCQACKGKTYI 204 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------ccCccCCCcceE
Confidence 368899887754 5999999877642 348888887765
No 228
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=78.88 E-value=5.6 Score=29.43 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=24.3
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHh---------CCCcEEEEECCC
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRG---------FRVQLDERDLSM 154 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~---------~gV~~eErDVs~ 154 (266)
...|+||.++ .+|++|+...+.+-+ .++-+..+|++.
T Consensus 17 ~kpvlv~f~a-----~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~ 62 (82)
T PF13899_consen 17 GKPVLVDFGA-----DWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDD 62 (82)
T ss_dssp TSEEEEEEET-----TTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTT
T ss_pred CCCEEEEEEC-----CCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCC
Confidence 3567777764 799999987766532 234456677743
No 229
>PTZ00062 glutaredoxin; Provisional
Probab=78.88 E-value=6.4 Score=35.27 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=37.3
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhCC-----CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEE
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGFR-----VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRY 185 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g-----V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~ 185 (266)
.+.+|+|+++ .||+.|+.+..+|..+- +.|..+|.+ ++ -..+|.+ |=||+.
T Consensus 17 ~g~~vl~f~a-----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~-----V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 17 TGKLVLYVKS-----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DA-----NNEYGVFEFYQNSQL 74 (204)
T ss_pred CCcEEEEEeC-----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cC-----cccceEEEEEECCEE
Confidence 3667888764 58999999999998774 455555543 33 3788965 457776
Q ss_pred Ecc
Q 024534 186 IGG 188 (266)
Q Consensus 186 IGG 188 (266)
|+-
T Consensus 75 i~r 77 (204)
T PTZ00062 75 INS 77 (204)
T ss_pred Eee
Confidence 653
No 230
>PRK14279 chaperone protein DnaJ; Provisional
Probab=78.65 E-value=1.7 Score=42.39 Aligned_cols=48 Identities=29% Similarity=0.760 Sum_probs=31.2
Q ss_pred ccccccCceee------EEcCCCCCcceeEecCCC--ceecCCccccCcee---cCCCC
Q 024534 214 GVCNICGGYSF------VLCGECDGSHKVYAEKGG--GFKSCNACNENGLI---RCPSC 261 (266)
Q Consensus 214 ~~C~~Cgg~rf------v~C~~C~GS~K~~~~~~~--~~~rC~~CNEnGLi---rCp~C 261 (266)
..|..|.|.+. ..|..|+|+-.+....+. ....|+.|+-.|.+ +|+.|
T Consensus 174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C 232 (392)
T PRK14279 174 APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEEC 232 (392)
T ss_pred ccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCC
Confidence 36888877664 458888888766544321 23578888777754 46666
No 231
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=78.40 E-value=1.9 Score=36.19 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCcEEEEE-CCCCHHHHHHHHHHHCC-CCCCCCCccEEEeCCEEEcchhHHHhHH
Q 024534 134 KAVRSILRGFRVQLDERD-LSMDSSFLNELQGILGG-GGQSKLTLPRVFIGGRYIGGVEEVRQLN 196 (266)
Q Consensus 134 ~~vk~iL~~~gV~~eErD-Vs~d~~~r~EL~ellg~-~~~~~~tvPqVFI~G~~IGG~del~~L~ 196 (266)
..++.++...|+..++.. ...+.++++++++-... ...+...+|.++|||+++-|.+.+..+.
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 346777788887643321 12244455555443311 0123589999999999999999876553
No 232
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=78.36 E-value=1.7 Score=42.90 Aligned_cols=39 Identities=31% Similarity=0.902 Sum_probs=29.2
Q ss_pred cccccCceee---------------EEcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 215 VCNICGGYSF---------------VLCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 215 ~C~~Cgg~rf---------------v~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
.|..|+|.+. .+|..|+|.-+++..+ .+|..|+..|.++
T Consensus 168 ~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----~~C~~C~G~g~v~ 221 (421)
T PTZ00037 168 DCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----KKCKNCSGKGVKK 221 (421)
T ss_pred cCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----ccCCcCCCcceee
Confidence 6888987663 2699999987777543 3599999888764
No 233
>PRK14281 chaperone protein DnaJ; Provisional
Probab=78.29 E-value=1.9 Score=42.14 Aligned_cols=63 Identities=29% Similarity=0.741 Sum_probs=39.3
Q ss_pred cHHHHhhcCCCC----CCccccccCceee-----EEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYSF-----VLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPSC 261 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~rf-----v~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~C 261 (266)
.|++++.+.... ....|..|.|.+. ..|..|+|+-.+..... + ....|+.|+-.|.+ +|+.|
T Consensus 146 tLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (397)
T PRK14281 146 TLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPAC 225 (397)
T ss_pred EHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCC
Confidence 456666553321 1136888877654 46999999976654321 1 13579999988864 68777
Q ss_pred C
Q 024534 262 S 262 (266)
Q Consensus 262 ~ 262 (266)
.
T Consensus 226 ~ 226 (397)
T PRK14281 226 Y 226 (397)
T ss_pred C
Confidence 3
No 234
>PRK14277 chaperone protein DnaJ; Provisional
Probab=78.22 E-value=1.8 Score=42.00 Aligned_cols=63 Identities=25% Similarity=0.682 Sum_probs=37.9
Q ss_pred cHHHHhhcCCCC----CCccccccCcee------eEEcCCCCCcceeEecCC---C---ceecCCccccCcee---cCCC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYS------FVLCGECDGSHKVYAEKG---G---GFKSCNACNENGLI---RCPS 260 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~r------fv~C~~C~GS~K~~~~~~---~---~~~rC~~CNEnGLi---rCp~ 260 (266)
.|++++.+.... ....|..|.|.+ ...|..|+|+-.+..... + ....|+.|+-.|.+ +|+.
T Consensus 138 tLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 217 (386)
T PRK14277 138 TFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNK 217 (386)
T ss_pred EHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCC
Confidence 455665543321 123687787654 466999999876654221 0 12578888888865 4777
Q ss_pred CC
Q 024534 261 CS 262 (266)
Q Consensus 261 C~ 262 (266)
|.
T Consensus 218 C~ 219 (386)
T PRK14277 218 CG 219 (386)
T ss_pred CC
Confidence 74
No 235
>PRK14279 chaperone protein DnaJ; Provisional
Probab=78.06 E-value=2.2 Score=41.63 Aligned_cols=38 Identities=26% Similarity=0.847 Sum_probs=29.8
Q ss_pred ccccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------~~C~~C~G~g~v~ 239 (392)
T PRK14279 191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------DPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------CcCCCCCCCeEEE
Confidence 379999998764 6999999987752 3599999888763
No 236
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=77.93 E-value=1.3 Score=35.34 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCcEEEEECCC-CHHHHHHHHHHHCC-CCCCCCCccEEEeCCEEEcchhHHHhHH
Q 024534 134 KAVRSILRGFRVQLDERDLSM-DSSFLNELQGILGG-GGQSKLTLPRVFIGGRYIGGVEEVRQLN 196 (266)
Q Consensus 134 ~~vk~iL~~~gV~~eErDVs~-d~~~r~EL~ellg~-~~~~~~tvPqVFI~G~~IGG~del~~L~ 196 (266)
..+..++..+|+..++.+-.+ +..+.+.+++-... ...+-..+|.++|+|+.+-|+++...|.
T Consensus 86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHHH
Confidence 357778888888754322211 22333333322210 0123478999999999999988765543
No 237
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=77.91 E-value=11 Score=30.24 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh-------C--CCcEEEEECCCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG-------F--RVQLDERDLSMD 155 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~-------~--gV~~eErDVs~d 155 (266)
+.|+||+.+ .+|+.|++....|+. . ++.+..++++.+
T Consensus 18 k~vll~F~a-----twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 18 KTVGLYFSA-----SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred CEEEEEEEC-----CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 445666543 489999987666542 1 355555565544
No 238
>PRK14285 chaperone protein DnaJ; Provisional
Probab=77.86 E-value=1.9 Score=41.59 Aligned_cols=37 Identities=32% Similarity=0.957 Sum_probs=28.3
Q ss_pred cccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 215 VCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 215 ~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
.|..|.|.+.+ +|+.|+|.-++.. ..|..|+-.|.++
T Consensus 165 ~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 212 (365)
T PRK14285 165 ICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------NPCKSCKGKGSLK 212 (365)
T ss_pred cCCCccCceeEEecCceeEEeeecCCCCCcccccC------CCCCCCCCCCEEe
Confidence 69999887644 6999999877642 3599999888763
No 239
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=77.64 E-value=1.6 Score=42.43 Aligned_cols=77 Identities=26% Similarity=0.502 Sum_probs=52.6
Q ss_pred HHHHHHHCCCCCCCCCccEEEe-------------CCEEEcchhHHHhHHhhccHHHHhhcCCCCCCccccccCceeeEE
Q 024534 160 NELQGILGGGGQSKLTLPRVFI-------------GGRYIGGVEEVRQLNETGELKKFVEGLPAAERGVCNICGGYSFVL 226 (266)
Q Consensus 160 ~EL~ellg~~~~~~~tvPqVFI-------------~G~~IGG~del~~L~esGeL~~lL~~~~~~~~~~C~~Cgg~rfv~ 226 (266)
.|+..-+|+ +.+.|.=|. +|+||. --.|+.++|+.||+++= -.||+
T Consensus 40 ~eIakAL~R----Pp~Y~tKyFGcELGAQT~fd~kn~ryiV-----NG~Hd~~KLqdlLdgFI------------kKFVl 98 (400)
T KOG2767|consen 40 VEIAKALGR----PPLYPTKYFGCELGAQTKFDVKNGRYIV-----NGAHEASKLQDLLDGFI------------KKFVL 98 (400)
T ss_pred HHHHHHhCC----CCCcccccceeeccccccccccCCeeee-----cccccHHHHHHHHHHHH------------HHhee
Confidence 566666775 566666554 566663 34578889999998865 47999
Q ss_pred cCCCCCcc-eeEecC-CCceecCCccccCceec
Q 024534 227 CGECDGSH-KVYAEK-GGGFKSCNACNENGLIR 257 (266)
Q Consensus 227 C~~C~GS~-K~~~~~-~~~~~rC~~CNEnGLir 257 (266)
|+.|.--- -++..+ ....+.|-+|.--|.++
T Consensus 99 C~~C~NPETel~itk~q~i~~~CkACG~r~~~d 131 (400)
T KOG2767|consen 99 CPSCENPETELIITKKQTISLKCKACGFRSDMD 131 (400)
T ss_pred CcCCCCCceeEEecccchhhhHHHHcCCccccc
Confidence 99997763 333332 23567899998777664
No 240
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.39 E-value=1.6 Score=42.24 Aligned_cols=49 Identities=35% Similarity=0.796 Sum_probs=33.2
Q ss_pred ccccccCcee--------eEEcCCCCC--cceeEe------cCCCceecCCccccCceecCCCCC
Q 024534 214 GVCNICGGYS--------FVLCGECDG--SHKVYA------EKGGGFKSCNACNENGLIRCPSCS 262 (266)
Q Consensus 214 ~~C~~Cgg~r--------fv~C~~C~G--S~K~~~------~~~~~~~rC~~CNEnGLirCp~C~ 262 (266)
..|.+|-|.+ -+-|..|.| .+|.=. =.+.|.++|+.|.--|++.|..|.
T Consensus 199 ~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~ 263 (406)
T KOG2813|consen 199 MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCS 263 (406)
T ss_pred eeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccccccc
Confidence 3788998877 778999988 122211 112257788888888888888774
No 241
>PRK14286 chaperone protein DnaJ; Provisional
Probab=77.33 E-value=2.5 Score=40.91 Aligned_cols=38 Identities=32% Similarity=0.818 Sum_probs=29.2
Q ss_pred ccccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------NPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------ccCCCCCCCcEEe
Confidence 379999888754 6999999977752 3599998888765
No 242
>PRK14284 chaperone protein DnaJ; Provisional
Probab=77.22 E-value=2.1 Score=41.72 Aligned_cols=37 Identities=35% Similarity=0.848 Sum_probs=28.6
Q ss_pred ccccccCceee-----------EEcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 214 GVCNICGGYSF-----------VLCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 214 ~~C~~Cgg~rf-----------v~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..|..|+|.+. .+|+.|+|.-++.. ..|..|+..|.+
T Consensus 176 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 223 (391)
T PRK14284 176 KVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------DPCSVCRGQGRI 223 (391)
T ss_pred eecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------CcCCCCCCccee
Confidence 36999998876 47999999966542 359999888876
No 243
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=77.13 E-value=11 Score=31.22 Aligned_cols=79 Identities=20% Similarity=0.424 Sum_probs=47.8
Q ss_pred CCCChHHH-----------HHHHHHHhCCCcE--EEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHH
Q 024534 127 RSTFEDCK-----------AVRSILRGFRVQL--DERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVR 193 (266)
Q Consensus 127 R~tC~~C~-----------~vk~iL~~~gV~~--eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~ 193 (266)
.+||+.|. +++..|..+||.+ +++.++.+ ++.. ....-|.|-|||+.
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-----~~~~-------~~~~S~~I~inG~p-------- 71 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-----EFAR-------QPLESPTIRINGRP-------- 71 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-----HHhh-------cccCCCeeeECCEe--------
Confidence 66888886 4566688888875 55555432 2111 12677999999994
Q ss_pred hHHhhccHHHHhhcCCCCCCccccccCceeeEEcCCCCC-cceeEecC
Q 024534 194 QLNETGELKKFVEGLPAAERGVCNICGGYSFVLCGECDG-SHKVYAEK 240 (266)
Q Consensus 194 ~L~esGeL~~lL~~~~~~~~~~C~~Cgg~rfv~C~~C~G-S~K~~~~~ 240 (266)
|+++| ++.. ....|+.||. ..|.+ .||++.-+
T Consensus 72 -------iE~~l-~~~v-~~s~C~~c~~------~~g~~~~CRt~~~~ 104 (120)
T PF10865_consen 72 -------IEDLL-GAEV-GESPCESCGC------SCGGDVDCRTLEYE 104 (120)
T ss_pred -------hhHhh-CCcc-ccCccccccc------ccCCCccceeEEEC
Confidence 66777 3332 2347877763 34433 36776433
No 244
>PRK14301 chaperone protein DnaJ; Provisional
Probab=77.12 E-value=2.3 Score=41.18 Aligned_cols=38 Identities=32% Similarity=0.865 Sum_probs=29.1
Q ss_pred ccccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|.|.+.+ +|..|+|.-++.. ..|..|+-.|.++
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 210 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------HPCPKCKGSGIVQ 210 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------CCCCCCCCCceec
Confidence 369999988654 6999999987752 3599999888763
No 245
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=77.03 E-value=1.9 Score=38.35 Aligned_cols=27 Identities=22% Similarity=0.667 Sum_probs=22.8
Q ss_pred CccccccCceeeEE-----cCCCCCcceeEec
Q 024534 213 RGVCNICGGYSFVL-----CGECDGSHKVYAE 239 (266)
Q Consensus 213 ~~~C~~Cgg~rfv~-----C~~C~GS~K~~~~ 239 (266)
...|..|+|.+++. |..|+|+-++...
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 35899999999986 9999999877654
No 246
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=77.01 E-value=2.6 Score=40.24 Aligned_cols=38 Identities=29% Similarity=0.840 Sum_probs=29.5
Q ss_pred ccccccCceee---------------EEcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSF---------------VLCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rf---------------v~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|+|.+. ..|..|+|.-++.. ..|..|+-.|.++
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 213 (354)
T TIGR02349 161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------EPCSTCKGKGRVK 213 (354)
T ss_pred ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------CCCCCCCCCcEec
Confidence 36999999754 46999999987752 2599999988764
No 247
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=77.00 E-value=5.3 Score=37.02 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHHH----hCCCcEEEEECCCCHH-------HHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILR----GFRVQLDERDLSMDSS-------FLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~----~~gV~~eErDVs~d~~-------~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
.+|+.|+....+|+ .+++.+..++++.+.. .-..+.+.+|- ..+|.+|+
T Consensus 176 swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV-----~~vPtl~L 235 (271)
T TIGR02740 176 SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI-----RTVPAVFL 235 (271)
T ss_pred CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC-----CcCCeEEE
Confidence 49999998877765 4567776677754310 01235556664 88999974
No 248
>PRK14282 chaperone protein DnaJ; Provisional
Probab=76.65 E-value=2.2 Score=41.18 Aligned_cols=37 Identities=32% Similarity=0.833 Sum_probs=29.0
Q ss_pred cccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 215 VCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 215 ~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
.|..|.|.+.+ .|+.|+|.-++.. ..|..|+..|.+.
T Consensus 171 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 222 (369)
T PRK14282 171 TCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------EYCHECGGSGRIR 222 (369)
T ss_pred CCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------CCCCCCCCceeEE
Confidence 79999888654 5999999977642 3599999988764
No 249
>PRK14276 chaperone protein DnaJ; Provisional
Probab=76.43 E-value=2.3 Score=41.27 Aligned_cols=37 Identities=27% Similarity=0.729 Sum_probs=29.1
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..|..|+|.+.+ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~ 215 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------EPCQTCHGTGHE 215 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------CCCCCCCCceEE
Confidence 379999997643 6999999977752 459999988876
No 250
>PRK14277 chaperone protein DnaJ; Provisional
Probab=76.41 E-value=2.7 Score=40.87 Aligned_cols=37 Identities=35% Similarity=0.868 Sum_probs=29.3
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 224 (386)
T PRK14277 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------DPCNKCGGTGRI 224 (386)
T ss_pred ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------CCCCCCCCCcEE
Confidence 379999988653 6999999987752 359999998876
No 251
>PRK10767 chaperone protein DnaJ; Provisional
Probab=76.37 E-value=2.6 Score=40.62 Aligned_cols=37 Identities=30% Similarity=0.807 Sum_probs=28.6
Q ss_pred cccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 215 VCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 215 ~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
.|..|+|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 161 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 208 (371)
T PRK10767 161 TCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------DPCKKCHGQGRVE 208 (371)
T ss_pred cCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------CCCCCCCCCceEe
Confidence 79999888765 5999999977642 4599999888763
No 252
>PRK14278 chaperone protein DnaJ; Provisional
Probab=76.34 E-value=2.4 Score=41.09 Aligned_cols=36 Identities=31% Similarity=0.845 Sum_probs=28.7
Q ss_pred cccccCceee---------------EEcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 215 VCNICGGYSF---------------VLCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 215 ~C~~Cgg~rf---------------v~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
.|..|.|.+. .+|..|+|.-+++. .+|..|+-.|.+
T Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 208 (378)
T PRK14278 158 TCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------DPCHECAGDGRV 208 (378)
T ss_pred ecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------CCCCCCCCceeE
Confidence 6999998764 36999999987752 359999998876
No 253
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.80 E-value=1.9 Score=41.68 Aligned_cols=63 Identities=29% Similarity=0.589 Sum_probs=42.3
Q ss_pred cHHHHhhcCCCC----CCccccccCceeeE-----EcCCCCCcceeEe-cCCC------ceecCCccccCcee-----cC
Q 024534 200 ELKKFVEGLPAA----ERGVCNICGGYSFV-----LCGECDGSHKVYA-EKGG------GFKSCNACNENGLI-----RC 258 (266)
Q Consensus 200 eL~~lL~~~~~~----~~~~C~~Cgg~rfv-----~C~~C~GS~K~~~-~~~~------~~~rC~~CNEnGLi-----rC 258 (266)
.|+++..+.... ....|..|-|.++- .|..|.|+.-... ...+ ..++|..||..|-+ +|
T Consensus 110 ~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C 189 (337)
T KOG0712|consen 110 TLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRC 189 (337)
T ss_pred EHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccC
Confidence 477776652221 11378888776653 3999999964432 2111 35799999999999 99
Q ss_pred CCCC
Q 024534 259 PSCS 262 (266)
Q Consensus 259 p~C~ 262 (266)
+.|.
T Consensus 190 ~~C~ 193 (337)
T KOG0712|consen 190 KTCS 193 (337)
T ss_pred cccc
Confidence 9995
No 254
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.77 E-value=9.9 Score=34.23 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHh
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQ 194 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~ 194 (266)
.-..++-+|.+|.-.+|.|++.-+.++.. -.+++..+. -..+|.+-|||..|.-.-.+.+
T Consensus 11 ~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~p-----fgqlP~l~vDg~~i~QS~AI~R 70 (206)
T KOG1695|consen 11 IRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMP-----FGQLPVLEVDGKKLVQSRAILR 70 (206)
T ss_pred cchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCC-----CCCCCEEeECCEeeccHHHHHH
Confidence 55689999999999999999999987643 344444443 3799999999999885544443
No 255
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=75.49 E-value=23 Score=29.19 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh-------CCCcEEEEECCCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG-------FRVQLDERDLSMD 155 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~-------~gV~~eErDVs~d 155 (266)
+.++||+.+ .+|+.|+.....|.. .++.+..++.+.+
T Consensus 62 k~~~l~f~a-----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~ 105 (173)
T PRK03147 62 KGVFLNFWG-----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET 105 (173)
T ss_pred CEEEEEEEC-----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 335555543 499999875544432 2355666666544
No 256
>PRK14297 chaperone protein DnaJ; Provisional
Probab=75.18 E-value=3 Score=40.44 Aligned_cols=37 Identities=38% Similarity=0.961 Sum_probs=29.2
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..|..|.|.+.+ +|..|+|.-++.. ..|..|+-.|.+
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 217 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------DPCNKCHGKGKV 217 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------CCCCCCCCCeEE
Confidence 369999998755 6999999977652 359999988865
No 257
>PRK14295 chaperone protein DnaJ; Provisional
Probab=74.96 E-value=3.3 Score=40.35 Aligned_cols=38 Identities=26% Similarity=0.692 Sum_probs=29.1
Q ss_pred ccccccCceee-----------EEcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSF-----------VLCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rf-----------v~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|+|.+. ..|+.|+|.-++.. ..|..|+..|.++
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~~~ 232 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------DPCLVCKGSGRAK 232 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------cCCCCCCCCceEe
Confidence 37999998765 47999999987752 3599999888653
No 258
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=74.96 E-value=19 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHHhC----CCcEEEEECCCCH
Q 024534 128 STFEDCKAVRSILRGF----RVQLDERDLSMDS 156 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~----gV~~eErDVs~d~ 156 (266)
.+|+.|.+....|..+ ++.+..++++.+.
T Consensus 35 ~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~ 67 (127)
T cd03010 35 SWCAPCREEHPVLMALARQGRVPIYGINYKDNP 67 (127)
T ss_pred CcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCH
Confidence 4999999877777654 3555566654443
No 259
>PRK14292 chaperone protein DnaJ; Provisional
Probab=74.95 E-value=2.3 Score=40.96 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=24.1
Q ss_pred eeeEEcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 222 YSFVLCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 222 ~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
.+.+.|..|+|+..-... ....+|..|+..|.++
T Consensus 137 ~r~~~C~~C~G~G~~~~~--~~~~~C~~C~G~G~~~ 170 (371)
T PRK14292 137 DRLTECEHCHGSRTEPGG--KPPKTCPTCRGAGAVR 170 (371)
T ss_pred EeeecCCCCcccccCCCC--CCCccCCCCCCccEEE
Confidence 567889999998642111 1357899999998654
No 260
>PRK14294 chaperone protein DnaJ; Provisional
Probab=74.02 E-value=3.2 Score=40.03 Aligned_cols=36 Identities=36% Similarity=0.890 Sum_probs=28.0
Q ss_pred cccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 215 VCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 215 ~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
.|..|.|.+.+ .|..|+|.-++.. ..|..|+-.|.+
T Consensus 163 ~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 209 (366)
T PRK14294 163 TCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------SPCKTCHGQGRV 209 (366)
T ss_pred cCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------cCCCCCCCceEe
Confidence 69999888754 6999999977642 459999988865
No 261
>PRK14300 chaperone protein DnaJ; Provisional
Probab=73.59 E-value=3.4 Score=39.93 Aligned_cols=36 Identities=25% Similarity=0.805 Sum_probs=26.1
Q ss_pred cccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 215 VCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 215 ~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
.|..|.|.+++ +|..|+|.-++.. ..|..|+-.|.+
T Consensus 164 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v 210 (372)
T PRK14300 164 TCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------NPCKKCHGMGRY 210 (372)
T ss_pred cCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------CCCCCCCCceEE
Confidence 68888888765 5888888866642 348888877765
No 262
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=73.56 E-value=3.2 Score=27.83 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=17.2
Q ss_pred EcCCCCCcceeEecCCCceecCCcc
Q 024534 226 LCGECDGSHKVYAEKGGGFKSCNAC 250 (266)
Q Consensus 226 ~C~~C~GS~K~~~~~~~~~~rC~~C 250 (266)
.|+.|+.+. ++.+...+...|+.|
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNC 25 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCC
Confidence 488998876 554444477899999
No 263
>PRK14873 primosome assembly protein PriA; Provisional
Probab=73.29 E-value=2.9 Score=43.78 Aligned_cols=44 Identities=27% Similarity=0.693 Sum_probs=34.3
Q ss_pred cccccCceeeEEcCCCCCcceeEecCCCceecCCccccCc-eecCCCCC
Q 024534 215 VCNICGGYSFVLCGECDGSHKVYAEKGGGFKSCNACNENG-LIRCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnG-LirCp~C~ 262 (266)
.|..||- -+.|+.|+++...+... +.++|..|+-.- -.+||.|-
T Consensus 385 ~C~~Cg~--~~~C~~C~~~L~~h~~~--~~l~Ch~CG~~~~p~~Cp~Cg 429 (665)
T PRK14873 385 ACARCRT--PARCRHCTGPLGLPSAG--GTPRCRWCGRAAPDWRCPRCG 429 (665)
T ss_pred EhhhCcC--eeECCCCCCceeEecCC--CeeECCCCcCCCcCccCCCCc
Confidence 7999985 47899999997765432 579999998643 45899995
No 264
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.81 E-value=3 Score=41.98 Aligned_cols=44 Identities=30% Similarity=0.723 Sum_probs=34.5
Q ss_pred cccccCceeeEEcCCCCCcceeEecCCCceecCCccccCc--eecCCCCC
Q 024534 215 VCNICGGYSFVLCGECDGSHKVYAEKGGGFKSCNACNENG--LIRCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnG--LirCp~C~ 262 (266)
.|..||-. +.|+.|+++...+... ..++|..|+-.- -.+||.|-
T Consensus 215 ~C~~Cg~~--~~C~~C~~~l~~h~~~--~~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 215 LCRSCGYI--LCCPNCDVSLTYHKKE--GKLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred EhhhCcCc--cCCCCCCCceEEecCC--CeEEcCCCcCcCCCCCCCCCCC
Confidence 79999864 6799999987666543 479999998765 45899995
No 265
>PRK14290 chaperone protein DnaJ; Provisional
Probab=72.71 E-value=3.3 Score=39.88 Aligned_cols=36 Identities=28% Similarity=0.757 Sum_probs=27.6
Q ss_pred cccccCceee---------------EEcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 215 VCNICGGYSF---------------VLCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 215 ~C~~Cgg~rf---------------v~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
.|..|+|.+. ..|..|+|.-++. ...|..|+-.|.+
T Consensus 167 ~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 217 (365)
T PRK14290 167 TCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP------EEKCPRCNGTGTV 217 (365)
T ss_pred cCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc------cCCCCCCCCceeE
Confidence 6999988764 4799999987663 2469999888775
No 266
>PRK14298 chaperone protein DnaJ; Provisional
Probab=72.26 E-value=3.1 Score=40.35 Aligned_cols=38 Identities=34% Similarity=0.826 Sum_probs=28.9
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.+.
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v~ 211 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI------ESPCPVCSGTGKVR 211 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc------CCCCCCCCCccEEE
Confidence 369999988653 699999997654 23599999888763
No 267
>PRK14281 chaperone protein DnaJ; Provisional
Probab=72.16 E-value=3.5 Score=40.27 Aligned_cols=38 Identities=32% Similarity=0.758 Sum_probs=28.9
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|+|.+.+ +|..|+|.-++.. .+|..|+-.|.+.
T Consensus 180 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 232 (397)
T PRK14281 180 ETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------DRCPACYGEGIKQ 232 (397)
T ss_pred ccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------CCCCCCCCCccEe
Confidence 379999887643 5999999987752 3599999888763
No 268
>PRK14293 chaperone protein DnaJ; Provisional
Probab=72.09 E-value=2.3 Score=41.06 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=22.5
Q ss_pred eeeEEcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 222 YSFVLCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 222 ~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
.|.++|..|+|+..... . ...+|+.|+.+|.+
T Consensus 141 ~r~~~C~~C~G~G~~~~--~-~~~~C~~C~G~G~~ 172 (374)
T PRK14293 141 PHLETCETCRGSGAKPG--T-GPTTCSTCGGAGQV 172 (374)
T ss_pred eccccCCCCCCcCCCCC--C-CCeeCCCCCCcceE
Confidence 45678999999854321 1 34689999999864
No 269
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=71.16 E-value=8.6 Score=31.73 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=39.9
Q ss_pred CCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCC
Q 024534 126 VRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGG 183 (266)
Q Consensus 126 vR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G 183 (266)
.|-.|++|..+.-+|..+ ++.++.+|... =|.++.+++|. ..-++|++..++
T Consensus 20 ~~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE---~~QslPvLVL~~ 76 (112)
T PF11287_consen 20 QRFYCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGE---ANQSLPVLVLAD 76 (112)
T ss_pred ceEECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhCh---hccCCCEEEeCC
Confidence 345899999999999976 35566666543 37899999997 568999998765
No 270
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=70.98 E-value=7.3 Score=31.57 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=17.7
Q ss_pred CCCCccEEEeCCEEEcchhHHHhH
Q 024534 172 SKLTLPRVFIGGRYIGGVEEVRQL 195 (266)
Q Consensus 172 ~~~tvPqVFI~G~~IGG~del~~L 195 (266)
+-...|.|||||+++.|.-++.++
T Consensus 133 ~i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 133 GITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp T-SSSSEEEETTCEEETTTSHHHH
T ss_pred CCccccEEEECCEEeCCCCCHHHH
Confidence 347999999999999866555443
No 271
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=70.25 E-value=20 Score=26.78 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHhCCCc---EEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe-CCEEEcchhHHHhH
Q 024534 129 TFEDCKAVRSILRGFRVQ---LDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI-GGRYIGGVEEVRQL 195 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~---~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI-~G~~IGG~del~~L 195 (266)
--++|-++..+|+-.+.+ |+.+-.+.- . + .....+|.+.. +|+.|.|++++.+.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~-~-------~-----Sptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP-W-------L-----SPTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC-C-------c-----CCCCCCCEEEECCCcEEECHHHHHHh
Confidence 458999999999999999 766665431 1 0 12478999999 99999999998765
No 272
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=70.22 E-value=3.7 Score=26.87 Aligned_cols=29 Identities=24% Similarity=0.644 Sum_probs=21.2
Q ss_pred eEEcCCCCCcceeEecC---CCceecCCcccc
Q 024534 224 FVLCGECDGSHKVYAEK---GGGFKSCNACNE 252 (266)
Q Consensus 224 fv~C~~C~GS~K~~~~~---~~~~~rC~~CNE 252 (266)
.|.|+.|+....+-.++ .+..++|+.|++
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 36799999887776542 235789999976
No 273
>PRK14291 chaperone protein DnaJ; Provisional
Probab=70.08 E-value=3.1 Score=40.41 Aligned_cols=37 Identities=35% Similarity=0.872 Sum_probs=27.8
Q ss_pred ccccccCceeeE-----------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSFV-----------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rfv-----------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|.|.+.+ .|..|+|.-.+ ...|..|+-.|.+.
T Consensus 174 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------~~~C~~C~G~g~v~ 221 (382)
T PRK14291 174 KVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-------REPCSKCNGRGLVI 221 (382)
T ss_pred ccCCCCCCceEEEEecceEEEEecCCCCCCceEE-------ccCCCCCCCCceEE
Confidence 379999988765 69999999742 23599999888763
No 274
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=69.57 E-value=3.6 Score=36.62 Aligned_cols=30 Identities=23% Similarity=0.690 Sum_probs=24.5
Q ss_pred eEEcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 224 FVLCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 224 fv~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
-..|+.|+|+-+++..+ ..|+.|+-.|-++
T Consensus 99 ~~~C~~C~G~G~~i~~~----~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ----RECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCC----CCCCCCCCccEEe
Confidence 77899999998887643 4699999998764
No 275
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=69.53 E-value=25 Score=30.09 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=20.5
Q ss_pred CCChHHHHHHHHHHh---CCCcEEEEECCCCHH
Q 024534 128 STFEDCKAVRSILRG---FRVQLDERDLSMDSS 157 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~---~gV~~eErDVs~d~~ 157 (266)
.+|+.|++....|.. .++.+.-++++.+.+
T Consensus 78 twC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 78 TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred CCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 499999986655544 467777777665543
No 276
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=69.09 E-value=13 Score=37.32 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHHHhC-------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCC
Q 024534 128 STFEDCKAVRSILRGF-------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGG 183 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~-------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G 183 (266)
++|+.|+.+..+|+.+ ++.+-.+|++.+.. +.+.+.++- ..+|.| |-+|
T Consensus 381 pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I-----~~~PTii~Fk~g 438 (463)
T TIGR00424 381 PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQL-----GSFPTILFFPKH 438 (463)
T ss_pred CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCC-----CccceEEEEECC
Confidence 5999999988887644 36677888876521 223344554 678877 4455
No 277
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=68.06 E-value=29 Score=31.13 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=34.1
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCC----CcEEE-----------EECCCCHHHH---HHHHHHHCCCCCCCCCcc
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFR----VQLDE-----------RDLSMDSSFL---NELQGILGGGGQSKLTLP 177 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~g----V~~eE-----------rDVs~d~~~r---~EL~ellg~~~~~~~tvP 177 (266)
|.|||+- +|.-|=-|-++|.++. |-.-- .|-...++|- +...+..+. +..=-|
T Consensus 2 VELFTSQ------GCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~---~~vYTP 72 (202)
T PF06764_consen 2 VELFTSQ------GCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGL---RSVYTP 72 (202)
T ss_dssp EEEEE-T------T-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT----S---SS
T ss_pred eeEecCC------CCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCC---CCCcCC
Confidence 6789875 9999998888888764 22222 2322334442 222333333 456679
Q ss_pred EEEeCC-EEEcchh
Q 024534 178 RVFIGG-RYIGGVE 190 (266)
Q Consensus 178 qVFI~G-~~IGG~d 190 (266)
|++||| ++.+|.+
T Consensus 73 Q~vVnG~~~~~g~~ 86 (202)
T PF06764_consen 73 QVVVNGREHRVGSD 86 (202)
T ss_dssp EEEETTTEEEETT-
T ss_pred eEEECCeeeeeccC
Confidence 999999 4566665
No 278
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=68.04 E-value=1.2 Score=36.22 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=20.3
Q ss_pred CCceeEEEeecchhhhhcCCCCC
Q 024534 54 KPSVFHRARIVHAFIRSLKPESE 76 (266)
Q Consensus 54 ~~~v~~~~~~s~~~~r~~~~~~~ 76 (266)
+|.+|+|+++++...++++|||.
T Consensus 76 ~~~~HlHisl~~~~g~v~gGHl~ 98 (120)
T PF03479_consen 76 KPFVHLHISLADPDGQVFGGHLL 98 (120)
T ss_dssp EEEEEEEEEEE-TTSEEEEEEEE
T ss_pred CCcceEEEEEECCCCeEEeeEeC
Confidence 46899999999999999999996
No 279
>PRK14283 chaperone protein DnaJ; Provisional
Probab=68.01 E-value=4.3 Score=39.27 Aligned_cols=32 Identities=28% Similarity=0.621 Sum_probs=22.6
Q ss_pred eeeEEcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 222 YSFVLCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 222 ~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
.+.+.|..|+|+.... .....+|+.|+..|.+
T Consensus 144 ~r~~~C~~C~G~G~~~---~~~~~~C~~C~G~G~~ 175 (378)
T PRK14283 144 RHTKKCPVCNGSRAEP---GSEVKTCPTCGGTGQV 175 (378)
T ss_pred eeeccCCCCCccccCC---CCCCccCCCcCCccEE
Confidence 4567799999986321 1135689999999875
No 280
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=67.67 E-value=11 Score=29.57 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=41.9
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHH-HHHhCCCc------E--EEEECCCCHHHHHHHHHHHCCCCCCCCCccEE-Ee-
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRS-ILRGFRVQ------L--DERDLSMDSSFLNELQGILGGGGQSKLTLPRV-FI- 181 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~-iL~~~gV~------~--eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV-FI- 181 (266)
...|+||..+ .+|++|+...+ +|.+..|. | -..|++.. + ..++...++. ..+|.+ ||
T Consensus 17 ~K~llv~~~~-----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e-~~~~~~~~~~-----~~~P~~~~i~ 84 (114)
T cd02958 17 KKWLLVYLQS-----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-E-GQRFLQSYKV-----DKYPHIAIID 84 (114)
T ss_pred CceEEEEEec-----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-c-HHHHHHHhCc-----cCCCeEEEEe
Confidence 3458888875 79999997643 55444332 3 34566542 2 3466677765 789988 45
Q ss_pred --CCEEE---cchhHHHhH
Q 024534 182 --GGRYI---GGVEEVRQL 195 (266)
Q Consensus 182 --~G~~I---GG~del~~L 195 (266)
+|+.| -|+.+..++
T Consensus 85 ~~~g~~l~~~~G~~~~~~f 103 (114)
T cd02958 85 PRTGEVLKVWSGNITPEDL 103 (114)
T ss_pred CccCcEeEEEcCCCCHHHH
Confidence 45444 455444433
No 281
>PRK14289 chaperone protein DnaJ; Provisional
Probab=67.67 E-value=4.8 Score=39.04 Aligned_cols=37 Identities=32% Similarity=0.855 Sum_probs=27.3
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.+
T Consensus 172 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------~~~C~~C~G~g~v 223 (386)
T PRK14289 172 ETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII------KKKCKKCGGEGIV 223 (386)
T ss_pred CcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc------CcCCCCCCCCcEE
Confidence 379999886554 699999886553 2459999888875
No 282
>PRK14287 chaperone protein DnaJ; Provisional
Probab=67.65 E-value=4.7 Score=39.00 Aligned_cols=38 Identities=32% Similarity=0.945 Sum_probs=29.6
Q ss_pred ccccccCceeeE---------------EcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 214 GVCNICGGYSFV---------------LCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 214 ~~C~~Cgg~rfv---------------~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..|..|.|.+.+ +|..|+|.-++.. ..|..|+-+|.+.
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------~~C~~C~G~g~v~ 208 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------QKCATCGGKGKVR 208 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------ccCCCCCCeeEEe
Confidence 369999998753 6999999987642 4599999888764
No 283
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=67.35 E-value=29 Score=29.29 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=24.2
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC---CCcEEEEECCCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF---RVQLDERDLSMD 155 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~---gV~~eErDVs~d 155 (266)
+.|+||+.+ .+|+.|++....|+.+ ++.+.-++++.+
T Consensus 64 k~vll~F~a-----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 64 KPVLLNVWA-----SWCPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred CEEEEEEEC-----CcCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 446665543 4999999876666544 677777776443
No 284
>PRK12495 hypothetical protein; Provisional
Probab=67.33 E-value=7.6 Score=35.60 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=16.8
Q ss_pred cHHHHhhcCCCCCCccccccCceee
Q 024534 200 ELKKFVEGLPAAERGVCNICGGYSF 224 (266)
Q Consensus 200 eL~~lL~~~~~~~~~~C~~Cgg~rf 224 (266)
.+.+||..........|..||.-.|
T Consensus 29 ~ma~lL~~gatmsa~hC~~CG~PIp 53 (226)
T PRK12495 29 RMSELLLQGATMTNAHCDECGDPIF 53 (226)
T ss_pred HHHHHHHhhcccchhhcccccCccc
Confidence 4556665544333458999999888
No 285
>PRK05580 primosome assembly protein PriA; Validated
Probab=67.26 E-value=4.5 Score=42.19 Aligned_cols=44 Identities=27% Similarity=0.624 Sum_probs=33.4
Q ss_pred cccccCceeeEEcCCCCCcceeEecCCCceecCCccccCc--eecCCCCC
Q 024534 215 VCNICGGYSFVLCGECDGSHKVYAEKGGGFKSCNACNENG--LIRCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnG--LirCp~C~ 262 (266)
.|..||-. +.|+.|+++...+.. . ..++|..|+-.- --+||.|-
T Consensus 383 ~C~~Cg~~--~~C~~C~~~l~~h~~-~-~~l~Ch~Cg~~~~~~~~Cp~Cg 428 (679)
T PRK05580 383 LCRDCGWV--AECPHCDASLTLHRF-Q-RRLRCHHCGYQEPIPKACPECG 428 (679)
T ss_pred EhhhCcCc--cCCCCCCCceeEECC-C-CeEECCCCcCCCCCCCCCCCCc
Confidence 69999864 679999998654443 3 579999998765 45899994
No 286
>PTZ00102 disulphide isomerase; Provisional
Probab=66.64 E-value=17 Score=35.12 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHh-------C--CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCE
Q 024534 128 STFEDCKAVRSILRG-------F--RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGR 184 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~-------~--gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~ 184 (266)
++|++|+++...+.. . .|.+-.+|.+.+ .++.+.++- ..+|.++ -+|+
T Consensus 59 ~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~----~~l~~~~~i-----~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 59 PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE----MELAQEFGV-----RGYPTIKFFNKGN 117 (477)
T ss_pred CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC----HHHHHhcCC-----CcccEEEEEECCc
Confidence 599999977654432 2 366778888765 345555664 6788774 3554
No 287
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=65.02 E-value=30 Score=29.38 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=25.6
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHH----hCCCcEEEEECCC
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILR----GFRVQLDERDLSM 154 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~----~~gV~~eErDVs~ 154 (266)
++..|+.|..+ +|+.|++..-.|+ .+++.+.-++++.
T Consensus 50 ~~~~lvnFWAs------WCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 50 DDYALVFFYQS------TCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CCCEEEEEECC------CChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 34457777766 9999998777765 4466666666653
No 288
>PF15616 TerY-C: TerY-C metal binding domain
Probab=64.40 E-value=6.8 Score=33.08 Aligned_cols=39 Identities=31% Similarity=0.816 Sum_probs=29.5
Q ss_pred ccccccCce-eeEEcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 214 GVCNICGGY-SFVLCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 214 ~~C~~Cgg~-rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..|--||.. .|+.| .|+ |++--++.+...||.|..+|-.
T Consensus 78 PgCP~CGn~~~fa~C-~CG---kl~Ci~g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCG---KLFCIDGEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhcEEEe-cCC---CEEEeCCCCCEECCCCCCeeee
Confidence 489999999 89988 674 6664333357899999988754
No 289
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=63.66 E-value=5.6 Score=33.88 Aligned_cols=27 Identities=44% Similarity=1.365 Sum_probs=16.3
Q ss_pred EcCCCCCcceeEecCCCceecCCccc------------cCceecCCCC
Q 024534 226 LCGECDGSHKVYAEKGGGFKSCNACN------------ENGLIRCPSC 261 (266)
Q Consensus 226 ~C~~C~GS~K~~~~~~~~~~rC~~CN------------EnGLirCp~C 261 (266)
.|..|.|. .|+-|..|| +.+..|||.|
T Consensus 101 ~C~~Cgg~---------rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~C 139 (147)
T cd03031 101 VCEGCGGA---------RFVPCSECNGSCKVFAENATAAGGFLRCPEC 139 (147)
T ss_pred CCCCCCCc---------CeEECCCCCCcceEEeccCcccccEEECCCC
Confidence 47777665 455555554 2456777777
No 290
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=63.61 E-value=6.4 Score=30.59 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=16.3
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF 143 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~ 143 (266)
+.++||+.+ .+|+.|......|..+
T Consensus 21 k~~vl~F~~-----~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 21 KPVLVYFWA-----TWCPVCRFTSPTVNQL 45 (123)
T ss_pred CEEEEEEEC-----CcChhhhhhChHHHHH
Confidence 345555443 4899999887666654
No 291
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=62.99 E-value=8.9 Score=27.85 Aligned_cols=35 Identities=23% Similarity=0.625 Sum_probs=25.7
Q ss_pred eeeEEcCCCCCcceeEecCCC---ce-ecCCccccCcee
Q 024534 222 YSFVLCGECDGSHKVYAEKGG---GF-KSCNACNENGLI 256 (266)
Q Consensus 222 ~rfv~C~~C~GS~K~~~~~~~---~~-~rC~~CNEnGLi 256 (266)
..++.|+.|++..++-...+. .| +-|+.|..--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence 368999999999887665442 23 689999876655
No 292
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=62.71 E-value=23 Score=33.68 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHH-------hCC--CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEE
Q 024534 128 STFEDCKAVRSILR-------GFR--VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRY 185 (266)
Q Consensus 128 ~tC~~C~~vk~iL~-------~~g--V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~ 185 (266)
.+|+.|+++...+. ..+ |.+-.+|.+.+ .++.+.++- ..+|.+ |-+|+.
T Consensus 28 ~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i-----~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 28 PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE----KDLAQKYGV-----SGYPTLKIFRNGED 87 (462)
T ss_pred CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc----HHHHHhCCC-----ccccEEEEEeCCcc
Confidence 49999998765554 334 67778887665 455666665 678877 445653
No 293
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.54 E-value=12 Score=37.13 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhC---C--CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEE
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILRGF---R--VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRY 185 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~---g--V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~ 185 (266)
.+.=...-|.+- +|..|-.|-+.|.-+ + |.+.-+|= .-|++|..++- -..||.||.||+.
T Consensus 115 ~g~~~FETy~Sl------tC~nCPDVVQALN~msvlNp~I~H~~IdG---a~Fq~Evear~------IMaVPtvflnGe~ 179 (520)
T COG3634 115 DGDFHFETYFSL------TCHNCPDVVQALNLMSVLNPRIKHTAIDG---ALFQDEVEARN------IMAVPTVFLNGEE 179 (520)
T ss_pred CCceeEEEEEEe------eccCChHHHHHHHHHHhcCCCceeEEecc---hhhHhHHHhcc------ceecceEEEcchh
Confidence 344567778765 776666666555544 3 34444543 45788877653 3789999999998
Q ss_pred Ecc
Q 024534 186 IGG 188 (266)
Q Consensus 186 IGG 188 (266)
.|.
T Consensus 180 fg~ 182 (520)
T COG3634 180 FGQ 182 (520)
T ss_pred hcc
Confidence 874
No 294
>PLN02309 5'-adenylylsulfate reductase
Probab=62.13 E-value=16 Score=36.79 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHhC-------CCcEEEEECC-CCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILRGF-------RVQLDERDLS-MDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~-------gV~~eErDVs-~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
++|++|+.+...|+.+ +|.|-.+|++ .+. +..++.++- ..+|.|++
T Consensus 375 pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~I-----~~~PTil~ 428 (457)
T PLN02309 375 PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQL-----GSFPTILL 428 (457)
T ss_pred CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCCC-----ceeeEEEE
Confidence 4999999888877654 3666777776 322 222234554 78888843
No 295
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.61 E-value=6.4 Score=38.61 Aligned_cols=32 Identities=38% Similarity=0.755 Sum_probs=23.2
Q ss_pred eeeEEcCCCCCcceeEecCCCceecCCccccCcee
Q 024534 222 YSFVLCGECDGSHKVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 222 ~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLi 256 (266)
.+.+.|..|+||- ...+.....|+.||-+|.+
T Consensus 140 ~~~~~C~~C~GsG---ak~gt~~~tC~tC~G~G~v 171 (371)
T COG0484 140 TRSVTCSTCHGSG---AKPGTDPKTCPTCNGSGQV 171 (371)
T ss_pred ceeeECCcCCCCC---CCCCCCCCcCCCCCCcCeE
Confidence 5678899999991 1111146899999999963
No 296
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=61.51 E-value=4.3 Score=34.70 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=20.8
Q ss_pred CceeEEEeecchhhhhcCCCCC
Q 024534 55 PSVFHRARIVHAFIRSLKPESE 76 (266)
Q Consensus 55 ~~v~~~~~~s~~~~r~~~~~~~ 76 (266)
|++|+|++++++-=++|||||.
T Consensus 84 p~~HlHa~l~~~~G~~~GGHL~ 105 (141)
T COG1661 84 PFVHLHAALGDENGITLGGHLL 105 (141)
T ss_pred CcEEEEEEEecCCCcEEeeeec
Confidence 6899999999999999999996
No 297
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=61.20 E-value=24 Score=28.23 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCcEEEEECCCCHH--HHHHHHHHHCCCCCCCCCccEEEeCCEEEc
Q 024534 144 RVQLDERDLSMDSS--FLNELQGILGGGGQSKLTLPRVFIGGRYIG 187 (266)
Q Consensus 144 gV~~eErDVs~d~~--~r~EL~ellg~~~~~~~tvPqVFI~G~~IG 187 (266)
.+.|+.+||....+ ..+++.++.-. ..--.|.|.|+|++||
T Consensus 37 ~f~~~YiDi~~p~~~~~~~~~a~~I~e---de~fYPlV~i~~eiV~ 79 (93)
T PF07315_consen 37 PFEFTYIDIENPPENDHDQQFAERILE---DELFYPLVVINDEIVA 79 (93)
T ss_dssp -EEEEEEETTT----HHHHHHHHHHHT---TSS-SSEEEETTEEEE
T ss_pred ceEEEEEecCCCCccHHHHHHHHHHHh---cccccceEEECCEEEe
Confidence 46689999986543 33455444432 2467899999999997
No 298
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=59.95 E-value=18 Score=27.66 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=38.7
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCC
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~ 168 (266)
...+++||+. ....++.+...|+..+..+..+.=.++...+.++.+....
T Consensus 27 ~~~~~lvf~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 76 (131)
T cd00079 27 KGGKVLIFCP-------SKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE 76 (131)
T ss_pred CCCcEEEEeC-------cHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc
Confidence 3467889976 5678999999999888888888777777777777766654
No 299
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=59.80 E-value=9.5 Score=33.40 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCcEEEEECCC-CHHHHHHHHHHHCC-CCCCCCCccEEEeCCEEEcchhH
Q 024534 134 KAVRSILRGFRVQLDERDLSM-DSSFLNELQGILGG-GGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 134 ~~vk~iL~~~gV~~eErDVs~-d~~~r~EL~ellg~-~~~~~~tvPqVFI~G~~IGG~de 191 (266)
..++.++...|+.-++.+-.+ +..+++.+.+.... ...+-..+|.++|||+|+-+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEcccc
Confidence 467778888888644322222 22333333222110 01234899999999999866544
No 300
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=59.55 E-value=6.1 Score=32.64 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCcEEEEECC-CCHHHHHHHHHHHCC-CCCCCCCccEEEeCCEEEcchhH
Q 024534 134 KAVRSILRGFRVQLDERDLS-MDSSFLNELQGILGG-GGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 134 ~~vk~iL~~~gV~~eErDVs-~d~~~r~EL~ellg~-~~~~~~tvPqVFI~G~~IGG~de 191 (266)
+.+..++...|+..++.+-. .+..+++.+++-... ...+....|.++|||+++-+...
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChhh
Confidence 56778888888865432211 122333333322111 01235899999999998755543
No 301
>smart00594 UAS UAS domain.
Probab=59.20 E-value=48 Score=26.47 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=34.3
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHH-HHHhCC--------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRS-ILRGFR--------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~-iL~~~g--------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
+.++||..+ ++|++|+...+ +|.+.. +-+-..|+..... .+|.+.++. .++|.+.|
T Consensus 28 K~~lv~~~~-----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~~-----~~~P~~~~ 92 (122)
T smart00594 28 RLLWLYLHS-----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYKL-----DSFPYVAI 92 (122)
T ss_pred CCEEEEEeC-----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcCc-----CCCCEEEE
Confidence 457777765 68999986333 333332 2234467765444 467777765 78998853
No 302
>PTZ00102 disulphide isomerase; Provisional
Probab=58.79 E-value=23 Score=34.30 Aligned_cols=54 Identities=7% Similarity=0.201 Sum_probs=33.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCC--------CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFR--------VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~g--------V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
..|+||+.+ ++|+.|+....+|+.+. +.+-.+|++.+.. +.+..+ ...+|.+++
T Consensus 376 k~vlv~f~a-----~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~----~~~~~~-----v~~~Pt~~~ 437 (477)
T PTZ00102 376 KDVLLEIYA-----PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET----PLEEFS-----WSAFPTILF 437 (477)
T ss_pred CCEEEEEEC-----CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc----chhcCC-----CcccCeEEE
Confidence 446666653 59999999888876542 4466677765432 222233 367888743
No 303
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=58.60 E-value=6.7 Score=24.70 Aligned_cols=24 Identities=25% Similarity=0.674 Sum_probs=13.2
Q ss_pred cCCCCCcceeEecCCCceecCCcccc
Q 024534 227 CGECDGSHKVYAEKGGGFKSCNACNE 252 (266)
Q Consensus 227 C~~C~GS~K~~~~~~~~~~rC~~CNE 252 (266)
|+.|.+..+....+ -.++|+.|+.
T Consensus 6 C~~CG~~t~~~~~g--~~r~C~~Cg~ 29 (32)
T PF09297_consen 6 CGRCGAPTKPAPGG--WARRCPSCGH 29 (32)
T ss_dssp -TTT--BEEE-SSS--S-EEESSSS-
T ss_pred cCcCCccccCCCCc--CEeECCCCcC
Confidence 78887776666553 3689998863
No 304
>PHA00626 hypothetical protein
Probab=57.98 E-value=8.5 Score=28.21 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=12.5
Q ss_pred eecCCcccc-CceecCCCCCC
Q 024534 244 FKSCNACNE-NGLIRCPSCSY 263 (266)
Q Consensus 244 ~~rC~~CNE-nGLirCp~C~~ 263 (266)
..||..|+. ..+-.|+.|-|
T Consensus 11 Ivrcg~cr~~snrYkCkdCGY 31 (59)
T PHA00626 11 IAKEKTMRGWSDDYVCCDCGY 31 (59)
T ss_pred eeeeceecccCcceEcCCCCC
Confidence 346666666 66666777654
No 305
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=57.60 E-value=45 Score=25.31 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=12.1
Q ss_pred CCChHHHHHHHHHHhC
Q 024534 128 STFEDCKAVRSILRGF 143 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~ 143 (266)
.+|+.|++....|+.+
T Consensus 31 ~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 31 PTCPVCKKLLPVIRSI 46 (114)
T ss_pred CCCcchHhHhHHHHHH
Confidence 4999999877666553
No 306
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.59 E-value=32 Score=27.84 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=41.6
Q ss_pred CCcEEEEEEcCCCCCCCChHHH------HHHHHHHh--------CCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCc
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCK------AVRSILRG--------FRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTL 176 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~------~vk~iL~~--------~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tv 176 (266)
+.+++||... ..|-.|. ..-.+|+. ...+|+.+||..++ ....++.++.-. ..--.
T Consensus 4 ~~~l~VyGae-----~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~---dey~Y 75 (106)
T COG4837 4 EAKLVVYGAE-----VICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQ---DEYFY 75 (106)
T ss_pred eeEEEEecch-----hhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhc---ccccc
Confidence 3467888653 3465553 34444442 23558899997543 333455554443 34678
Q ss_pred cEEEeCCEEEc
Q 024534 177 PRVFIGGRYIG 187 (266)
Q Consensus 177 PqVFI~G~~IG 187 (266)
|.|.|+|++|+
T Consensus 76 PlivvedeiVa 86 (106)
T COG4837 76 PLIVVEDEIVA 86 (106)
T ss_pred eEEEEcceEee
Confidence 99999999996
No 307
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=54.60 E-value=7.5 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.618 Sum_probs=14.6
Q ss_pred EcCCCCCcceeEecCC-CceecCCcccc
Q 024534 226 LCGECDGSHKVYAEKG-GGFKSCNACNE 252 (266)
Q Consensus 226 ~C~~C~GS~K~~~~~~-~~~~rC~~CNE 252 (266)
.|.+|+-.--+..... .....|++|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 4777765443332211 24567888776
No 308
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=54.52 E-value=23 Score=32.94 Aligned_cols=60 Identities=5% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHH----hCCCcEEEEECCCC--HHHH-----HHHHHHHCCCCCCCCCccEE
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILR----GFRVQLDERDLSMD--SSFL-----NELQGILGGGGQSKLTLPRV 179 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~----~~gV~~eErDVs~d--~~~r-----~EL~ellg~~~~~~~tvPqV 179 (266)
..+-.+++|+.+ .|++|.+.--+|+ .+|+.+..++++.. +++- ..+.+.+|- ..+|.+
T Consensus 149 a~~~gL~fFy~~------~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-----~~~Pal 217 (256)
T TIGR02739 149 SQSYGLFFFYRG------KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV-----KYFPAL 217 (256)
T ss_pred HhceeEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC-----ccCceE
Confidence 445678888866 9999998777774 56888777777642 1211 234455554 779999
Q ss_pred Ee
Q 024534 180 FI 181 (266)
Q Consensus 180 FI 181 (266)
|+
T Consensus 218 ~L 219 (256)
T TIGR02739 218 YL 219 (256)
T ss_pred EE
Confidence 85
No 309
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=54.46 E-value=9.2 Score=31.36 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=12.4
Q ss_pred cccccCceeeEEcCCCCCcce
Q 024534 215 VCNICGGYSFVLCGECDGSHK 235 (266)
Q Consensus 215 ~C~~Cgg~rfv~C~~C~GS~K 235 (266)
.|..|.|.+.++|..|+|+..
T Consensus 77 ~C~~C~G~Gk~~C~~C~G~G~ 97 (111)
T PLN03165 77 KCINCDGAGSLTCTTCQGSGI 97 (111)
T ss_pred ECCCCCCcceeeCCCCCCCEE
Confidence 566666666566666666543
No 310
>PLN02189 cellulose synthase
Probab=54.24 E-value=9.4 Score=41.98 Aligned_cols=37 Identities=51% Similarity=1.265 Sum_probs=25.5
Q ss_pred CccccccCce--------eeEEcCCCCCcceeEecCCCceecCCcccc----CceecCCCC
Q 024534 213 RGVCNICGGY--------SFVLCGECDGSHKVYAEKGGGFKSCNACNE----NGLIRCPSC 261 (266)
Q Consensus 213 ~~~C~~Cgg~--------rfv~C~~C~GS~K~~~~~~~~~~rC~~CNE----nGLirCp~C 261 (266)
...|.-|||. -||.|.+| +|--|-.|-| +|-+.||.|
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C------------~fpvCr~Cyeyer~eg~q~CpqC 82 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNEC------------GFPVCRPCYEYERREGTQNCPQC 82 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccC------------CCccccchhhhhhhcCCccCccc
Confidence 3589999988 89999999 4444555533 455555555
No 311
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=53.17 E-value=12 Score=24.08 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=19.5
Q ss_pred EEcCCCCCcceeEecC---CCceecCCccccC
Q 024534 225 VLCGECDGSHKVYAEK---GGGFKSCNACNEN 253 (266)
Q Consensus 225 v~C~~C~GS~K~~~~~---~~~~~rC~~CNEn 253 (266)
+.|+.|+..-++-.+. .+..++|+.|...
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~ 34 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHV 34 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCE
Confidence 6799998887776432 1246788888653
No 312
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=52.99 E-value=23 Score=32.32 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh----CCCcEEEEEC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG----FRVQLDERDL 152 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~----~gV~~eErDV 152 (266)
..|++|+ -..|+||++.-.-|.. -.|.+..+.+
T Consensus 119 ~~I~vFt------Dp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 119 RIVYVFA------DPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred eEEEEEE------CCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3455665 5799999998666543 2366555543
No 313
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=52.14 E-value=9.2 Score=24.75 Aligned_cols=24 Identities=29% Similarity=0.778 Sum_probs=11.3
Q ss_pred EcCCCCCcceeEecCCCceecCCccc
Q 024534 226 LCGECDGSHKVYAEKGGGFKSCNACN 251 (266)
Q Consensus 226 ~C~~C~GS~K~~~~~~~~~~rC~~CN 251 (266)
.|..|++..=+..+++ -+.|..|.
T Consensus 5 ~C~~C~~~~i~~~~~~--~~~C~~Cg 28 (33)
T PF08792_consen 5 KCSKCGGNGIVNKEDD--YEVCIFCG 28 (33)
T ss_pred EcCCCCCCeEEEecCC--eEEcccCC
Confidence 4555555532223332 45566654
No 314
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.78 E-value=11 Score=41.06 Aligned_cols=22 Identities=32% Similarity=0.875 Sum_probs=18.0
Q ss_pred ccccccCceeeE------------EcCCCCCcce
Q 024534 214 GVCNICGGYSFV------------LCGECDGSHK 235 (266)
Q Consensus 214 ~~C~~Cgg~rfv------------~C~~C~GS~K 235 (266)
+.|..|.|.+++ +|+.|+|.+-
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 579999998865 5999988863
No 315
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.15 E-value=54 Score=29.22 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=51.8
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEV 192 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del 192 (266)
.+.+|+.- .-+.|+++...++.+|+.|+.+.|+... ....|+.++... .++|.+--+|-.+-....+
T Consensus 2 ~~~ly~~~------~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-----~kVP~l~d~~~~l~eS~AI 70 (226)
T KOG0867|consen 2 KLKLYGHL------GSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-----GKVPALEDGGLTLWESHAI 70 (226)
T ss_pred CceEeecC------CCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-----CCCCeEecCCeEEeeHHHH
Confidence 35688754 7788999999999999999998776432 234556555544 8999988888877766665
Q ss_pred HhH
Q 024534 193 RQL 195 (266)
Q Consensus 193 ~~L 195 (266)
...
T Consensus 71 ~~Y 73 (226)
T KOG0867|consen 71 LRY 73 (226)
T ss_pred HHH
Confidence 543
No 316
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=50.75 E-value=47 Score=28.82 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEECCCCHHH--HHHHHHHHC-C--------CC---------CCCCCccEEE--eCCEEE
Q 024534 129 TFEDCKAVRSILRGFRVQLDERDLSMDSSF--LNELQGILG-G--------GG---------QSKLTLPRVF--IGGRYI 186 (266)
Q Consensus 129 tC~~C~~vk~iL~~~gV~~eErDVs~d~~~--r~EL~ellg-~--------~~---------~~~~tvPqVF--I~G~~I 186 (266)
.-+..+++..+|+.+||+|+.+=++.|+.. ..++.+... + .| ....++|.|= +.....
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l 89 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKAL 89 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCCccCC
Confidence 678999999999999999999888887432 223322111 0 00 2346777763 455566
Q ss_pred cchhHHHhHHh
Q 024534 187 GGVEEVRQLNE 197 (266)
Q Consensus 187 GG~del~~L~e 197 (266)
+|.|.+..+.+
T Consensus 90 ~G~daLlS~vq 100 (156)
T TIGR01162 90 SGLDSLLSIVQ 100 (156)
T ss_pred CCHHHHHHHhc
Confidence 77776665544
No 317
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=50.13 E-value=18 Score=30.41 Aligned_cols=35 Identities=23% Similarity=0.657 Sum_probs=23.7
Q ss_pred eeeEEcCCCCCcc-eeEecCCCceecCCccccCcee
Q 024534 222 YSFVLCGECDGSH-KVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 222 ~rfv~C~~C~GS~-K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..||.|..|+-.- +...++..-+++|.+|..-.-|
T Consensus 95 ~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 95 RKYVICRECNRPDTRIIKEGRVSLLKCEACGAKAPL 130 (133)
T ss_pred hheEECCCCCCCCcEEEEeCCeEEEecccCCCCCcc
Confidence 4599999998874 4344433246899999865543
No 318
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=50.12 E-value=25 Score=29.01 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCcEEEEEEcCC--CCCCCChHHHHHHHHHH----hC--CCcEEEEECCCCHHHHH---HHHH--HHCCCCCCCCCccEE
Q 024534 113 DQRVVVYFTSLR--VVRSTFEDCKAVRSILR----GF--RVQLDERDLSMDSSFLN---ELQG--ILGGGGQSKLTLPRV 179 (266)
Q Consensus 113 ~~kVVIYttSLr--gvR~tC~~C~~vk~iL~----~~--gV~~eErDVs~d~~~r~---EL~e--llg~~~~~~~tvPqV 179 (266)
..++.||+++-+ .-+.+||+|.++.-+++ .. +..+.+..|..-...++ .++. .+. -..+|.|
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~-----l~~IPTL 93 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK-----LKGIPTL 93 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC--------SSSEE
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee-----eeecceE
Confidence 356666666533 35778999999886555 32 45567777753222211 2322 222 3789998
Q ss_pred E
Q 024534 180 F 180 (266)
Q Consensus 180 F 180 (266)
.
T Consensus 94 i 94 (119)
T PF06110_consen 94 I 94 (119)
T ss_dssp E
T ss_pred E
Confidence 7
No 319
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=49.79 E-value=5.5 Score=30.93 Aligned_cols=21 Identities=43% Similarity=0.977 Sum_probs=9.2
Q ss_pred CCccccccCc--------eeeEEcCCCCC
Q 024534 212 ERGVCNICGG--------YSFVLCGECDG 232 (266)
Q Consensus 212 ~~~~C~~Cgg--------~rfv~C~~C~G 232 (266)
++..|..||+ .-||.|.+|+-
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~f 36 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAF 36 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCC
Confidence 3458999974 56888888843
No 320
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=49.69 E-value=16 Score=26.78 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=15.5
Q ss_pred EEeCCEEEcchhHHHhHHh
Q 024534 179 VFIGGRYIGGVEEVRQLNE 197 (266)
Q Consensus 179 VFI~G~~IGG~del~~L~e 197 (266)
||+||..||=.++-.+|.+
T Consensus 1 VFlNG~~iG~~~~p~~l~~ 19 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELVK 19 (63)
T ss_dssp EEETTEEEEEESSHHHHHH
T ss_pred CEECCEEEEEEcCHHHHHH
Confidence 7999999998887666654
No 321
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=49.64 E-value=4.8 Score=33.70 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCcEEEEECC-CCHHHHHHHHHHHCC-CCCCCCCccEEEeCCE-EEcchhHHHhHH
Q 024534 135 AVRSILRGFRVQLDERDLS-MDSSFLNELQGILGG-GGQSKLTLPRVFIGGR-YIGGVEEVRQLN 196 (266)
Q Consensus 135 ~vk~iL~~~gV~~eErDVs-~d~~~r~EL~ellg~-~~~~~~tvPqVFI~G~-~IGG~del~~L~ 196 (266)
.+..++...|+.-++.+-. .+.+.++++++-... ...+...+|.++|||+ .+-|.+.+..|.
T Consensus 125 vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 125 VLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHH
Confidence 4566666666654332221 233444444433211 0123589999999999 788888775543
No 322
>PLN02436 cellulose synthase A
Probab=49.58 E-value=13 Score=41.21 Aligned_cols=20 Identities=45% Similarity=1.012 Sum_probs=16.7
Q ss_pred CccccccCce--------eeEEcCCCCC
Q 024534 213 RGVCNICGGY--------SFVLCGECDG 232 (266)
Q Consensus 213 ~~~C~~Cgg~--------rfv~C~~C~G 232 (266)
...|.-|||. -||.|.+|+-
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~f 63 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAF 63 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCC
Confidence 3589999987 7999999943
No 323
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=49.48 E-value=41 Score=28.27 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=40.8
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHH----hCC---CcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEE
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILR----GFR---VQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRY 185 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~----~~g---V~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~ 185 (266)
..|||.+ |--.-++....+--+|. .++ +.+-.+|++.+ .+|...+|- .++|.+ |=||++
T Consensus 36 ~~vl~~~---gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~----~~LA~~fgV-----~siPTLl~FkdGk~ 103 (132)
T PRK11509 36 DGVVLLS---SDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS----EAIGDRFGV-----FRFPATLVFTGGNY 103 (132)
T ss_pred cEEEEeC---CCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC----HHHHHHcCC-----ccCCEEEEEECCEE
Confidence 3455543 34455666655544444 333 66888888766 567777776 889987 569998
Q ss_pred Ecchh
Q 024534 186 IGGVE 190 (266)
Q Consensus 186 IGG~d 190 (266)
+|-..
T Consensus 104 v~~i~ 108 (132)
T PRK11509 104 RGVLN 108 (132)
T ss_pred EEEEe
Confidence 86443
No 324
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=49.04 E-value=19 Score=30.55 Aligned_cols=35 Identities=26% Similarity=0.553 Sum_probs=23.9
Q ss_pred eeeEEcCCCCCcc-eeEecCCCceecCCccccCcee
Q 024534 222 YSFVLCGECDGSH-KVYAEKGGGFKSCNACNENGLI 256 (266)
Q Consensus 222 ~rfv~C~~C~GS~-K~~~~~~~~~~rC~~CNEnGLi 256 (266)
..||.|..|+-.- +...++..-+++|.+|....-|
T Consensus 100 ~~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 100 KEYVICPECGSPDTKLIKEGRIWVLKCEACGAETPV 135 (138)
T ss_pred HhcEECCCCCCCCcEEEEcCCeEEEEcccCCCCCcC
Confidence 3499999998774 3333433258999999875543
No 325
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=49.04 E-value=13 Score=26.60 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCE
Q 024534 116 VVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGR 184 (266)
Q Consensus 116 VVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~ 184 (266)
+.||++. .--....++.+|++.||.+..+|-.+... .|. .+....+.|+|...
T Consensus 1 ~~l~~~~------~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--------~g~--~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAG------DPIEAELIKGLLEENGIPAFVKNEHMSGY--------AGE--PGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--------HHHHHHHHHHHHHTT--EE--S----SS-------------S--SSSEEEEEEGG
T ss_pred CEEEEcC------CHHHHHHHHHHHHhCCCcEEEECCccchh--------hcc--cCccCceEEEECHH
Confidence 4577765 56678999999999999999887654321 111 01234488888764
No 326
>PLN02400 cellulose synthase
Probab=48.62 E-value=13 Score=41.08 Aligned_cols=37 Identities=46% Similarity=1.204 Sum_probs=26.0
Q ss_pred CccccccCce--------eeEEcCCCCCcceeEecCCCceecCCcccc----CceecCCCC
Q 024534 213 RGVCNICGGY--------SFVLCGECDGSHKVYAEKGGGFKSCNACNE----NGLIRCPSC 261 (266)
Q Consensus 213 ~~~C~~Cgg~--------rfv~C~~C~GS~K~~~~~~~~~~rC~~CNE----nGLirCp~C 261 (266)
+..|.-|||. -||.|.+| +|--|--|-| +|.+-||.|
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eC------------aFPVCRpCYEYERkeGnq~CPQC 84 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNEC------------AFPVCRPCYEYERKDGTQCCPQC 84 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccC------------CCccccchhheecccCCccCccc
Confidence 4589999987 89999999 4444555543 455555555
No 327
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=48.56 E-value=93 Score=24.52 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHHh-------CCCcEEEEECC
Q 024534 129 TFEDCKAVRSILRG-------FRVQLDERDLS 153 (266)
Q Consensus 129 tC~~C~~vk~iL~~-------~gV~~eErDVs 153 (266)
+|+.|.+-...|.. .++.+.-+..+
T Consensus 35 ~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~ 66 (149)
T cd02970 35 GCPFCREYLRALSKLLPELDALGVELVAVGPE 66 (149)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence 99999875444443 45555555543
No 328
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=48.37 E-value=18 Score=42.19 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=32.4
Q ss_pred EEcchhHHHhHHhhccHHHHhhcCCC-----C-CCccccccCceeeE------------EcCCCCCcce
Q 024534 185 YIGGVEEVRQLNETGELKKFVEGLPA-----A-ERGVCNICGGYSFV------------LCGECDGSHK 235 (266)
Q Consensus 185 ~IGG~del~~L~esGeL~~lL~~~~~-----~-~~~~C~~Cgg~rfv------------~C~~C~GS~K 235 (266)
|+|=+|++++++.+=...+. .++.+ . ..+.|+.|.|.+++ +|+.|+|.+-
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak~-rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAKA-LNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHHH-cCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 56678888888764333332 23222 1 24579999998864 5999999863
No 329
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=47.99 E-value=12 Score=42.15 Aligned_cols=43 Identities=26% Similarity=0.791 Sum_probs=29.6
Q ss_pred ccccccCceee-EEcCCCCCcceeEecCCCceecCCcccc------CceecCCCCCC
Q 024534 214 GVCNICGGYSF-VLCGECDGSHKVYAEKGGGFKSCNACNE------NGLIRCPSCSY 263 (266)
Q Consensus 214 ~~C~~Cgg~rf-v~C~~C~GS~K~~~~~~~~~~rC~~CNE------nGLirCp~C~~ 263 (266)
..|..||..-+ ..|+.|+.+... ...|+.|+- ++-.+||.|-.
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~-------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEP-------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCC-------ceeCccCCCccCCCccccccCCCCCC
Confidence 37999997543 369999877422 237888865 34558999964
No 330
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=47.98 E-value=27 Score=32.52 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE--eCCEEEc
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF--IGGRYIG 187 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF--I~G~~IG 187 (266)
.|||+.. .++++.|..+-..|..+ .|+|..+..+.-. +.+.+. ...+|.|+ .+|..||
T Consensus 148 ~VVVHiY-----~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f~-----~~~LPtllvYk~G~l~~ 212 (265)
T PF02114_consen 148 WVVVHIY-----EPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENFP-----DKNLPTLLVYKNGDLIG 212 (265)
T ss_dssp EEEEEEE------TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS------TTC-SEEEEEETTEEEE
T ss_pred EEEEEEE-----eCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCCc-----ccCCCEEEEEECCEEEE
Confidence 4555554 56899999999888866 4677777664311 111122 37899885 5998777
Q ss_pred chhHHHhH----HhhccHHHHhhcCCCCC
Q 024534 188 GVEEVRQL----NETGELKKFVEGLPAAE 212 (266)
Q Consensus 188 G~del~~L----~esGeL~~lL~~~~~~~ 212 (266)
.+-.+.++ ....+|..+|...|.+.
T Consensus 213 ~~V~l~~~~g~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 213 NFVGLTDLLGDDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp EECTGGGCT-TT--HHHHHHHHHTTTSSS
T ss_pred eEEehHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 65444332 22347999999988764
No 331
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=47.61 E-value=8.8 Score=26.84 Aligned_cols=34 Identities=35% Similarity=0.645 Sum_probs=23.2
Q ss_pred CceeeEEcCCCCCcceeEe-----cCCCceecCCccccC
Q 024534 220 GGYSFVLCGECDGSHKVYA-----EKGGGFKSCNACNEN 253 (266)
Q Consensus 220 gg~rfv~C~~C~GS~K~~~-----~~~~~~~rC~~CNEn 253 (266)
||.=||.|.+|..-=.+-. .++...+||..|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 6788999999976543322 222246899999874
No 332
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=47.40 E-value=75 Score=24.65 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHhCCC--cEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCE-EEcchhHHHhHHhh
Q 024534 128 STFEDCKAVRSILRGFRV--QLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGR-YIGGVEEVRQLNET 198 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~gV--~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~-~IGG~del~~L~es 198 (266)
..|+.|....+.++.+.. .++.+|+..+.. .++.+..+.......+.-.+.-+|+ ...|.+.+.++...
T Consensus 5 g~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 5 GDCPLCRREVRFLRRRDRGGRLRFVDIQSEPD--QALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCCHhHHHHHHHHHhcCCCCCEEEEECCChhh--hhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 389999999999999875 588888843322 1222222210001122233323776 88999988887654
No 333
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=46.82 E-value=14 Score=40.79 Aligned_cols=20 Identities=45% Similarity=0.994 Sum_probs=16.9
Q ss_pred CccccccCce--------eeEEcCCCCC
Q 024534 213 RGVCNICGGY--------SFVLCGECDG 232 (266)
Q Consensus 213 ~~~C~~Cgg~--------rfv~C~~C~G 232 (266)
+..|.-|||. -||-|-+|.-
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~F 44 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAF 44 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCC
Confidence 4589999988 8999999943
No 334
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=46.68 E-value=94 Score=27.24 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=49.4
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHH-CC---------CC--------CCCC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS--SFLNELQGIL-GG---------GG--------QSKL 174 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~--~~r~EL~ell-g~---------~~--------~~~~ 174 (266)
+|.|..-| +...+.=+++-.+|+.+||+|+.+=|+-|+ +...+..+-. .+ .+ ....
T Consensus 4 ~V~IIMGS----~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T 79 (162)
T COG0041 4 KVGIIMGS----KSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKT 79 (162)
T ss_pred eEEEEecC----cchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcC
Confidence 44444433 446777889999999999999999999773 3322222111 11 00 2346
Q ss_pred CccEE--EeCCEEEcchhHHHhH
Q 024534 175 TLPRV--FIGGRYIGGVEEVRQL 195 (266)
Q Consensus 175 tvPqV--FI~G~~IGG~del~~L 195 (266)
++|.| =|..+.++|.|.|...
T Consensus 80 ~lPViGVPv~s~~L~GlDSL~Si 102 (162)
T COG0041 80 PLPVIGVPVQSKALSGLDSLLSI 102 (162)
T ss_pred CCCeEeccCccccccchHHHHHH
Confidence 77877 3677888888876543
No 335
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=46.47 E-value=1e+02 Score=26.08 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=42.4
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCC------CCCCCccEEEeCCE
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGG------QSKLTLPRVFIGGR 184 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~------~~~~tvPqVFI~G~ 184 (266)
..+++|..|.=...-.....-.++-+.++..||.+.-+-|.. ...++|.++....+ .-..-+|++||+++
T Consensus 109 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 109 ENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred CceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 356666666511111123344556667889999988888865 33567888875411 22456788898875
No 336
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=46.16 E-value=5.9 Score=27.94 Aligned_cols=20 Identities=50% Similarity=1.074 Sum_probs=9.4
Q ss_pred ceecCCcc----ccCceecCCCCC
Q 024534 243 GFKSCNAC----NENGLIRCPSCS 262 (266)
Q Consensus 243 ~~~rC~~C----NEnGLirCp~C~ 262 (266)
+|.-|..| -+|+--+||.|.
T Consensus 21 gf~IC~~C~~~i~~~~~g~CPgCr 44 (48)
T PF14570_consen 21 GFQICRFCYHDILENEGGRCPGCR 44 (48)
T ss_dssp S----HHHHHHHTTSS-SB-TTT-
T ss_pred CCcHHHHHHHHHHhccCCCCCCCC
Confidence 67777777 556666788885
No 337
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=45.63 E-value=14 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=17.8
Q ss_pred eeEEcCCCCCcc-eeEecCC-CceecCCcccc
Q 024534 223 SFVLCGECDGSH-KVYAEKG-GGFKSCNACNE 252 (266)
Q Consensus 223 rfv~C~~C~GS~-K~~~~~~-~~~~rC~~CNE 252 (266)
+-+||+.|.|+- ..|.++. .+.--|..|+.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCGA 33 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCCC
Confidence 357899998873 3354432 24455666654
No 338
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=45.53 E-value=55 Score=24.10 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHHhC----C--CcEEEEECCCCHHHHHHHHHHHCC
Q 024534 128 STFEDCKAVRSILRGF----R--VQLDERDLSMDSSFLNELQGILGG 168 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~----g--V~~eErDVs~d~~~r~EL~ellg~ 168 (266)
.+|+.|.+....|..+ + -.++.+-|+.|.. .+++++.+..
T Consensus 11 ~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~-~~~~~~~~~~ 56 (95)
T PF13905_consen 11 SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED-EEEWKKFLKK 56 (95)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS-HHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC-HHHHHHHHHh
Confidence 3999999877776643 3 4455555555532 3555555544
No 339
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=45.09 E-value=12 Score=31.17 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=22.2
Q ss_pred eeeEEcCCCCCcceeE-ecCCCceecCCcccc
Q 024534 222 YSFVLCGECDGSHKVY-AEKGGGFKSCNACNE 252 (266)
Q Consensus 222 ~rfv~C~~C~GS~K~~-~~~~~~~~rC~~CNE 252 (266)
..||.|..|+..--.+ .++..-+++|.+|..
T Consensus 91 ~~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 122 (125)
T PF01873_consen 91 KEYVLCPECGSPDTELIKEGRLIFLKCKACGA 122 (125)
T ss_dssp CHHSSCTSTSSSSEEEEEETTCCEEEETTTSC
T ss_pred HHEEEcCCCCCCccEEEEcCCEEEEEecccCC
Confidence 4589999998775444 343336899999975
No 340
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=45.00 E-value=55 Score=28.82 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHHHhHHhhccHHHHhhc
Q 024534 131 EDCKAVRSILRGF-RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEG 207 (266)
Q Consensus 131 ~~C~~vk~iL~~~-gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del~~L~esGeL~~lL~~ 207 (266)
++-..+++.|+.+ |+.++.+++..++...+.|. . .=.||+.| |....+.+..+.-.|.++|+.
T Consensus 46 ~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~---~--------ad~I~l~G---G~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 46 EYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL---E--------ADVIYVGG---GNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred HHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh---c--------CCEEEECC---chHHHHHHHHHHcCHHHHHHH
Confidence 6788899999999 99998888754322222222 2 12466666 555444443333356676664
No 341
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=44.53 E-value=17 Score=25.63 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=18.1
Q ss_pred eEEcCCCCCcceeEecCCC-------ceecCCcccc
Q 024534 224 FVLCGECDGSHKVYAEKGG-------GFKSCNACNE 252 (266)
Q Consensus 224 fv~C~~C~GS~K~~~~~~~-------~~~rC~~CNE 252 (266)
..||+-| |+..+...... .++.|..|+-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 4589999 77666543321 3477888865
No 342
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=44.46 E-value=7.5 Score=38.12 Aligned_cols=49 Identities=31% Similarity=0.905 Sum_probs=30.0
Q ss_pred ccccccCc------eeeEEcCCCCCcceeEecCCCceecCCc---c--ccCceecCCCCCC
Q 024534 214 GVCNICGG------YSFVLCGECDGSHKVYAEKGGGFKSCNA---C--NENGLIRCPSCSY 263 (266)
Q Consensus 214 ~~C~~Cgg------~rfv~C~~C~GS~K~~~~~~~~~~rC~~---C--NEnGLirCp~C~~ 263 (266)
..|-.||+ ++.+-|+.|.|=-|.-..+. ..-.|++ | +..---|||.|.|
T Consensus 16 ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNn-K~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNN-KQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccCccccceeeeeehhhhhhHHHHHhhcC-cceecccccccccchHhhccCCchhH
Confidence 37889987 56788999999876655443 1223332 1 1112347888866
No 343
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=44.36 E-value=77 Score=22.92 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=18.1
Q ss_pred CCChHHHHHHHHHHhC-------CCcEEEEECCCC
Q 024534 128 STFEDCKAVRSILRGF-------RVQLDERDLSMD 155 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~-------gV~~eErDVs~d 155 (266)
.+|+.|.+....|..+ ++.+.-++++.+
T Consensus 29 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 29 SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 4999999665555433 455666776654
No 344
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=42.97 E-value=17 Score=33.69 Aligned_cols=60 Identities=5% Similarity=0.111 Sum_probs=38.1
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHH----hCCCcEEEEECCC--CHHHH-----HHHHHHHCCCCCCCCCccEE
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILR----GFRVQLDERDLSM--DSSFL-----NELQGILGGGGQSKLTLPRV 179 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~----~~gV~~eErDVs~--d~~~r-----~EL~ellg~~~~~~~tvPqV 179 (266)
..+-.++.|+.| .|++|.+.--+|+ .+|+.+.-++++. .++|. ....+.+|- ..+|.+
T Consensus 142 a~~~GL~fFy~s------~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-----~~~PAl 210 (248)
T PRK13703 142 AEHYGLMFFYRG------QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV-----KYFPAL 210 (248)
T ss_pred HhcceEEEEECC------CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC-----cccceE
Confidence 455678888855 9999998766666 4577776666653 12221 122244554 788999
Q ss_pred Ee
Q 024534 180 FI 181 (266)
Q Consensus 180 FI 181 (266)
|+
T Consensus 211 ~L 212 (248)
T PRK13703 211 ML 212 (248)
T ss_pred EE
Confidence 86
No 345
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=42.22 E-value=64 Score=27.19 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=16.9
Q ss_pred CCCCccEEEeCCEE-EcchhHHHh
Q 024534 172 SKLTLPRVFIGGRY-IGGVEEVRQ 194 (266)
Q Consensus 172 ~~~tvPqVFI~G~~-IGG~del~~ 194 (266)
+...+|.++|||++ |.|+.....
T Consensus 172 gv~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 172 GISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred CCCcCCEEEECCeEeecCCCCHHH
Confidence 34899999999885 577765533
No 346
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=42.08 E-value=23 Score=23.96 Aligned_cols=29 Identities=28% Similarity=0.760 Sum_probs=14.6
Q ss_pred eeEEcCCCCCcc--eeEecCCC-ceecCCccc
Q 024534 223 SFVLCGECDGSH--KVYAEKGG-GFKSCNACN 251 (266)
Q Consensus 223 rfv~C~~C~GS~--K~~~~~~~-~~~rC~~CN 251 (266)
+-.||+.|.|+- ++|.++.+ +---|..|+
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCC
Confidence 467999999984 33555332 455677773
No 347
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=42.02 E-value=92 Score=27.53 Aligned_cols=99 Identities=24% Similarity=0.280 Sum_probs=57.3
Q ss_pred cccCCCCCCcEEEEEEcCCC---CCCCChHHHHHHHHHHhCCCcEE-EEEC---CCCHHHHHHHHHHHCC--CCCC----
Q 024534 106 TIRIPGADQRVVVYFTSLRV---VRSTFEDCKAVRSILRGFRVQLD-ERDL---SMDSSFLNELQGILGG--GGQS---- 172 (266)
Q Consensus 106 ~~~~p~~~~kVVIYttSLrg---vR~tC~~C~~vk~iL~~~gV~~e-ErDV---s~d~~~r~EL~ellg~--~~~~---- 172 (266)
..|.==+..+-++|+.++=. |..-||+|-.==+.=+++.-.|. ..++ ..+.+..+||-.++-. .+..
T Consensus 25 ~~C~cCgk~~~~~Y~~~~Y~~~dv~~lCPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPGy~sWQqe~Wl 104 (176)
T PF03691_consen 25 VVCDCCGKARGYYYTGPFYSEEDVEYLCPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPGYSSWQQEYWL 104 (176)
T ss_pred CCcCCCCCCceeEecCCceecCCccccCHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCCCcccccchhh
Confidence 34555566666777655332 35569999876666666665542 2333 2567778888887643 0100
Q ss_pred -CCCccEEEeCCEEEcchhHHHhHHhhccHHHHhhcCC
Q 024534 173 -KLTLPRVFIGGRYIGGVEEVRQLNETGELKKFVEGLP 209 (266)
Q Consensus 173 -~~tvPqVFI~G~~IGG~del~~L~esGeL~~lL~~~~ 209 (266)
--.=+.-||+ ++ |.+||.+| .+.|.++++...
T Consensus 105 ~hC~D~CaFlG--~v-g~~El~~~--~~~~~~~~~~~~ 137 (176)
T PF03691_consen 105 AHCDDYCAFLG--YV-GWEELKAM--PEELEEVLEDYE 137 (176)
T ss_pred hhcCCHHHhcC--CC-CHHHHHHH--HHHHHHHHHHHh
Confidence 0111344555 22 68888888 356777776543
No 348
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=41.51 E-value=34 Score=27.05 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhC-----CCcEEEEECC
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGF-----RVQLDERDLS 153 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~-----gV~~eErDVs 153 (266)
...|++|+- ..|++|.+....|+.+ .+.+..+++.
T Consensus 6 ~~~i~~f~D------~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 6 DVTIVEFFD------YNCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CEEEEEEEC------CCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 345667763 5999999887766653 2567777764
No 349
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=41.09 E-value=45 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=28.0
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSS 157 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~ 157 (266)
+|.|.+-| ...-+.+++++.+|+.+|+.|+.+-++-|+.
T Consensus 2 ~V~Ii~gs----~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~ 40 (150)
T PF00731_consen 2 KVAIIMGS----TSDLPIAEEAAKTLEEFGIPYEVRVASAHRT 40 (150)
T ss_dssp EEEEEESS----GGGHHHHHHHHHHHHHTT-EEEEEE--TTTS
T ss_pred eEEEEeCC----HHHHHHHHHHHHHHHHcCCCEEEEEEeccCC
Confidence 45566544 3357889999999999999999988887753
No 350
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=40.92 E-value=36 Score=31.57 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=29.2
Q ss_pred CCccEEE--eCCEEEcchhHHHhH----HhhccHHHHhhcCCCC
Q 024534 174 LTLPRVF--IGGRYIGGVEEVRQL----NETGELKKFVEGLPAA 211 (266)
Q Consensus 174 ~tvPqVF--I~G~~IGG~del~~L----~esGeL~~lL~~~~~~ 211 (266)
..||.+. -+|+.||.+-.|.+. +..|+|.++|.+.+..
T Consensus 210 n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred cCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 6788764 599999999776543 4569999999987754
No 351
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=40.65 E-value=12 Score=24.09 Aligned_cols=19 Identities=32% Similarity=0.814 Sum_probs=11.6
Q ss_pred ccccccCceeeEE---cCCCCC
Q 024534 214 GVCNICGGYSFVL---CGECDG 232 (266)
Q Consensus 214 ~~C~~Cgg~rfv~---C~~C~G 232 (266)
..|..||...|-| |+.|.+
T Consensus 12 ~rC~~Cg~~~~pPr~~Cp~C~s 33 (37)
T PF12172_consen 12 QRCRDCGRVQFPPRPVCPHCGS 33 (37)
T ss_dssp EE-TTT--EEES--SEETTTT-
T ss_pred EEcCCCCCEecCCCcCCCCcCc
Confidence 4799999999877 888843
No 352
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=40.04 E-value=22 Score=27.40 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEC
Q 024534 132 DCKAVRSILRGFRVQLDERDL 152 (266)
Q Consensus 132 ~C~~vk~iL~~~gV~~eErDV 152 (266)
.=..++.+++++||+..|+++
T Consensus 31 ~~~tvkd~IEsLGVP~tEV~~ 51 (81)
T PF14451_consen 31 GGATVKDVIESLGVPHTEVGL 51 (81)
T ss_pred CCCcHHHHHHHcCCChHHeEE
Confidence 334577788888888777664
No 353
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.82 E-value=24 Score=37.53 Aligned_cols=44 Identities=27% Similarity=0.724 Sum_probs=32.9
Q ss_pred cccccCceeeEEcCCCCCcceeEecCCCceecCCccccCce--ecCCCCC
Q 024534 215 VCNICGGYSFVLCGECDGSHKVYAEKGGGFKSCNACNENGL--IRCPSCS 262 (266)
Q Consensus 215 ~C~~Cgg~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnGL--irCp~C~ 262 (266)
.|..||= -.-|+.|+.+.-.+... +.++|..|+-..- ..||.|-
T Consensus 437 ~C~~Cg~--v~~Cp~Cd~~lt~H~~~--~~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 437 LCRDCGY--IAECPNCDSPLTLHKAT--GQLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred ecccCCC--cccCCCCCcceEEecCC--CeeEeCCCCCCCCCCCCCCCCC
Confidence 6999984 35699999995444333 5799999998744 5799994
No 354
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=39.65 E-value=82 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=19.7
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHH----HhCCCcEEEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSIL----RGFRVQLDERD 151 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL----~~~gV~~eErD 151 (266)
+.++||+. ..+|+.|++....| +..++.+.-+.
T Consensus 75 k~vvl~F~-----atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 75 RPTLLMFT-----APSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred CEEEEEEE-----CCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34555554 25999998765444 44466655554
No 355
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=39.45 E-value=1.1e+02 Score=31.31 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=16.7
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGF 143 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~ 143 (266)
+.|+|++.+ .||+.|++....|+.+
T Consensus 57 KpVvV~FWA-----TWCppCk~emP~L~eL 81 (521)
T PRK14018 57 KPTLIKFWA-----SWCPLCLSELGETEKW 81 (521)
T ss_pred CEEEEEEEc-----CCCHHHHHHHHHHHHH
Confidence 345555542 4999999987777644
No 356
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=39.19 E-value=58 Score=26.17 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=28.5
Q ss_pred CCCCCcEEEEEEcCCCCCCCChHHHHHHH----HHHhC----CCcEEEEECCCCHH
Q 024534 110 PGADQRVVVYFTSLRVVRSTFEDCKAVRS----ILRGF----RVQLDERDLSMDSS 157 (266)
Q Consensus 110 p~~~~kVVIYttSLrgvR~tC~~C~~vk~----iL~~~----gV~~eErDVs~d~~ 157 (266)
|.+...|++|+.- .|++|.+.-. +++.+ .|.|..+++..+..
T Consensus 10 ~~a~~~v~~f~d~------~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 10 PDAPITVTEFFDF------QCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp TTTSEEEEEEE-T------TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CCCCeEEEEEECC------CCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 4455678888854 9999987644 44444 67789999876543
No 357
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=38.72 E-value=28 Score=23.57 Aligned_cols=24 Identities=38% Similarity=0.807 Sum_probs=15.5
Q ss_pred cCCCCCcceeEecCCCceecCCccc
Q 024534 227 CGECDGSHKVYAEKGGGFKSCNACN 251 (266)
Q Consensus 227 C~~C~GS~K~~~~~~~~~~rC~~CN 251 (266)
|+.|+.. +++.-......+|.+|.
T Consensus 21 CP~Cg~~-~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 21 CPHCGST-KHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCe-eeEEeCCCCeEECCCCC
Confidence 8888776 66544433456777775
No 358
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.96 E-value=79 Score=29.96 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=42.1
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCC-----cEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEEE
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRV-----QLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRYI 186 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV-----~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~I 186 (266)
--||=||.+ ||.-|+++--++..+.- -|-++||+ |.+..... .+...+|.+ |.||.-|
T Consensus 23 ~v~Vdfta~------wCGPCk~IaP~Fs~lankYp~aVFlkVdVd-------~c~~taa~--~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 23 LVVVDFTAS------WCGPCKRIAPIFSDLANKYPGAVFLKVDVD-------ECRGTAAT--NGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEEEec------ccchHHhhhhHHHHhhhhCcccEEEEEeHH-------Hhhchhhh--cCcccCceEEEEecCeEe
Confidence 345567766 99999999999998743 36788884 44333322 245778875 7899765
Q ss_pred ---cchh
Q 024534 187 ---GGVE 190 (266)
Q Consensus 187 ---GG~d 190 (266)
-|+|
T Consensus 88 d~~qGAd 94 (288)
T KOG0908|consen 88 DQIQGAD 94 (288)
T ss_pred eeecCCC
Confidence 4555
No 359
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=37.84 E-value=2.1e+02 Score=22.76 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=29.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHH-------HhCCCcEEEEECCCCHHHHHHHHH
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSIL-------RGFRVQLDERDLSMDSSFLNELQG 164 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL-------~~~gV~~eErDVs~d~~~r~EL~e 164 (266)
+.+||++-. ..+|+.|......| ...+|.+..+.+..+...++.+.+
T Consensus 29 k~~vv~f~~----~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 29 KPVVVNFWA----SAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp SEEEEEEES----TTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred CeEEEEEEc----cCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 445666654 22899998554333 445688888888877774444444
No 360
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=37.33 E-value=16 Score=36.09 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=36.9
Q ss_pred CCEEEcchhHHHhHHhhccHHHHhhc--CCCCCC-ccccccCce-----------eeEEcCCCCCcce
Q 024534 182 GGRYIGGVEEVRQLNETGELKKFVEG--LPAAER-GVCNICGGY-----------SFVLCGECDGSHK 235 (266)
Q Consensus 182 ~G~~IGG~del~~L~esGeL~~lL~~--~~~~~~-~~C~~Cgg~-----------rfv~C~~C~GS~K 235 (266)
+|+.+-|.+++.+..+.|..+.||-. +..... -.|..||.. .+..|+.|++...
T Consensus 290 ~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 357 (409)
T TIGR00108 290 DGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEMD 357 (409)
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCcccc
Confidence 37889999999999999999998733 332211 267777732 2335777777653
No 361
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=37.06 E-value=22 Score=24.39 Aligned_cols=27 Identities=26% Similarity=0.746 Sum_probs=13.5
Q ss_pred EcCCCCCcceeEecCCCceecCCccccCce
Q 024534 226 LCGECDGSHKVYAEKGGGFKSCNACNENGL 255 (266)
Q Consensus 226 ~C~~C~GS~K~~~~~~~~~~rC~~CNEnGL 255 (266)
.|..|+..-.+ . .....+|++|.-.=|
T Consensus 4 ~C~~Cg~~~~~--~-~~~~irC~~CG~rIl 30 (44)
T smart00659 4 ICGECGRENEI--K-SKDVVRCRECGYRIL 30 (44)
T ss_pred ECCCCCCEeec--C-CCCceECCCCCceEE
Confidence 46667553221 1 124567777765433
No 362
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=36.73 E-value=12 Score=38.66 Aligned_cols=132 Identities=22% Similarity=0.410 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHhCCCc--EEEEECCCCH----HH---HHHHHHHHCC--------CCCCCCCccEEEeCCEEEcchhHH
Q 024534 130 FEDCKAVRSILRGFRVQ--LDERDLSMDS----SF---LNELQGILGG--------GGQSKLTLPRVFIGGRYIGGVEEV 192 (266)
Q Consensus 130 C~~C~~vk~iL~~~gV~--~eErDVs~d~----~~---r~EL~ellg~--------~~~~~~tvPqVFI~G~~IGG~del 192 (266)
++-|+.++++|+...-. |...|+.-+- .. ..+|++.+.. .......+++.+..-+||---.++
T Consensus 393 y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v~~lR~qL~~m~~~l~~Cr~a~~~~~~~~~~~~~yL~e~~~~ 472 (580)
T KOG1829|consen 393 YPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEVKELRQQLQHIEGYLKTCRFASLKLLRQRLAVRRYLTESPHL 472 (580)
T ss_pred cccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhhhhhhccCchh
Confidence 56678888888876543 4455554321 11 1122222211 011225677777777777544444
Q ss_pred HhH-----HhhccHHHHhhcCCCCCC---ccccccCceeeEEcCCCCCcceeEecCCCceecCCccccC--------cee
Q 024534 193 RQL-----NETGELKKFVEGLPAAER---GVCNICGGYSFVLCGECDGSHKVYAEKGGGFKSCNACNEN--------GLI 256 (266)
Q Consensus 193 ~~L-----~esGeL~~lL~~~~~~~~---~~C~~Cgg~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEn--------GLi 256 (266)
..| .++|.|..+|+..-+... ..|..|-+.+|+ |..|....-+|--......||..|+-- .--
T Consensus 473 ~Sl~DL~~i~~g~L~~~l~~~~k~~~~HV~~C~lC~~~gfi-Ce~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s~ 551 (580)
T KOG1829|consen 473 FSLKDLQDIQDGALLRLLNELTKLSSKHVKECDLCTGKGFI-CELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKSP 551 (580)
T ss_pred hhhhhHHHhhcccHHHHHHHHHHHhhhhhhhchhhccCeee-eeeccCCCcccccccccceeHHHHHHHHHHHHHhccCC
Confidence 333 356888888876543322 369999999996 999977766664433356888887532 122
Q ss_pred cCCCCC
Q 024534 257 RCPSCS 262 (266)
Q Consensus 257 rCp~C~ 262 (266)
.||.|.
T Consensus 552 ~CPrC~ 557 (580)
T KOG1829|consen 552 CCPRCE 557 (580)
T ss_pred CCCchH
Confidence 288885
No 363
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=36.30 E-value=80 Score=22.16 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCChHHHHHHHHHHhC------CCcEEEEECC-CCHHHHHHHH
Q 024534 128 STFEDCKAVRSILRGF------RVQLDERDLS-MDSSFLNELQ 163 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~------gV~~eErDVs-~d~~~r~EL~ 163 (266)
.+|+.|+.+...|... .+.+..+|+. .+....+.+.
T Consensus 42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (127)
T COG0526 42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFG 84 (127)
T ss_pred CcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHh
Confidence 4999999987777654 2668888886 5544444433
No 364
>PRK04023 DNA polymerase II large subunit; Validated
Probab=35.55 E-value=28 Score=38.52 Aligned_cols=43 Identities=23% Similarity=0.521 Sum_probs=30.5
Q ss_pred ccccccCceee-EEcCCCCCcceeEecCCCceecCCccccCce-ecCCCCCC
Q 024534 214 GVCNICGGYSF-VLCGECDGSHKVYAEKGGGFKSCNACNENGL-IRCPSCSY 263 (266)
Q Consensus 214 ~~C~~Cgg~rf-v~C~~C~GS~K~~~~~~~~~~rC~~CNEnGL-irCp~C~~ 263 (266)
..|..||-..+ ..|+.|+.- .....+|+.|-..+- -.||.|-+
T Consensus 627 RfCpsCG~~t~~frCP~CG~~-------Te~i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTH-------TEPVYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCC-------CCcceeCccccCcCCCCcCCCCCC
Confidence 37999997633 469999766 113578999976553 57999965
No 365
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=35.42 E-value=1.1e+02 Score=24.75 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=36.1
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCE
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGR 184 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~ 184 (266)
.++|+|.- |-+|.+-.+++..-+.=-+.+..+|...+.. .....+.+.......++|.+||..+
T Consensus 34 ~g~I~Lv~------RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~--~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 34 NGNIALIE------RGGCSFLTKAINAQKAGALAVIITDVNNDSD--EYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred CCeEEEEE------CCCCCHHHHHHHHHHCCCcEEEEEECCCCcc--ccceEecCCCCCCCceEEEEEecHH
Confidence 46787775 6689999998884443334456666544321 1111111110113468999998754
No 366
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=35.27 E-value=75 Score=32.14 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 129 TFEDCKAVRSILRGF-----RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 129 tC~~C~~vk~iL~~~-----gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
.|++|..++++|+.+ .|.++++|...+ +++.+.++- ..+|.+-|
T Consensus 377 ~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~----~~~~~~~~v-----~~~P~~~i 425 (555)
T TIGR03143 377 SNEKSAELQSFLGEFASLSEKLNSEAVNRGEE----PESETLPKI-----TKLPTVAL 425 (555)
T ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeccccc----hhhHhhcCC-----CcCCEEEE
Confidence 688999999999874 467788887654 344455554 46788866
No 367
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=34.57 E-value=17 Score=33.59 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.8
Q ss_pred ccccccCceeeEEcCCCCCcceeEec
Q 024534 214 GVCNICGGYSFVLCGECDGSHKVYAE 239 (266)
Q Consensus 214 ~~C~~Cgg~rfv~C~~C~GS~K~~~~ 239 (266)
-.|..-.|..++.|+.|.|+-++-.+
T Consensus 28 ~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred CccccccCCCCCcCCCCcCCccCCcc
Confidence 37888899999999999999998754
No 368
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=34.44 E-value=1.4e+02 Score=24.67 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCcEEEEECCCC
Q 024534 133 CKAVRSILRGFRVQLDERDLSMD 155 (266)
Q Consensus 133 C~~vk~iL~~~gV~~eErDVs~d 155 (266)
=+++++.|+++|+.++.+|+...
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~ 24 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDR 24 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSC
T ss_pred HHHHHHHHHHCCCEEEEEeccCC
Confidence 46889999999999999999874
No 369
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.42 E-value=28 Score=35.11 Aligned_cols=35 Identities=34% Similarity=0.847 Sum_probs=18.9
Q ss_pred ccCceeeEEcCCCCCcceeEecCCCceecCCccc-------cCceecCCCCCC
Q 024534 218 ICGGYSFVLCGECDGSHKVYAEKGGGFKSCNACN-------ENGLIRCPSCSY 263 (266)
Q Consensus 218 ~Cgg~rfv~C~~C~GS~K~~~~~~~~~~rC~~CN-------EnGLirCp~C~~ 263 (266)
.=|-..++.|..| +...+|+.|+ ..+..+|..|-+
T Consensus 207 rrGya~~~~C~~C-----------g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~ 248 (505)
T TIGR00595 207 RRGYSKNLLCRSC-----------GYILCCPNCDVSLTYHKKEGKLRCHYCGY 248 (505)
T ss_pred CCcCCCeeEhhhC-----------cCccCCCCCCCceEEecCCCeEEcCCCcC
Confidence 3344455666666 2345666666 334556666643
No 370
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=34.22 E-value=77 Score=30.11 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCChHHHHHHHHHHhC---------CCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 128 STFEDCKAVRSILRGF---------RVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 128 ~tC~~C~~vk~iL~~~---------gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
++|+.|+.....|+.+ ++.+-.+|++.+. +.. .+ ...+|.+++
T Consensus 374 ~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~-~~-----i~~~Pt~~~ 425 (462)
T TIGR01130 374 PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP-FE-----VEGFPTIKF 425 (462)
T ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC-CC-----ccccCEEEE
Confidence 4999999887777642 4667788886542 222 22 378898865
No 371
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=34.06 E-value=1.7e+02 Score=26.74 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=27.6
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSM 154 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~ 154 (266)
.+|++.-|. ......=.+-.++++.|+.+|+.+.++++..
T Consensus 32 ~~v~fIPtA-s~~~~~~~y~~~~~~af~~lG~~v~~l~~~~ 71 (233)
T PRK05282 32 RKAVFIPYA-GVTQSWDDYTAKVAEALAPLGIEVTGIHRVA 71 (233)
T ss_pred CeEEEECCC-CCCCCHHHHHHHHHHHHHHCCCEEEEeccch
Confidence 344444443 4334444668899999999999998888763
No 372
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=33.45 E-value=43 Score=22.17 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=17.5
Q ss_pred EEcCCCCCcceeEecCCCceecCCc
Q 024534 225 VLCGECDGSHKVYAEKGGGFKSCNA 249 (266)
Q Consensus 225 v~C~~C~GS~K~~~~~~~~~~rC~~ 249 (266)
+.|+.|++.......+.+.|.-|+.
T Consensus 2 ~~CP~Cg~~lv~r~~k~g~F~~Cs~ 26 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKGKFLGCSN 26 (39)
T ss_pred cCCCCCCceeEEEECCCCCEEECCC
Confidence 4699999766665555557888864
No 373
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=33.11 E-value=34 Score=35.85 Aligned_cols=42 Identities=29% Similarity=0.478 Sum_probs=29.6
Q ss_pred ccccccCceeeEE----cCCCCCcceeEecCCC--cee-----cCCccccCce
Q 024534 214 GVCNICGGYSFVL----CGECDGSHKVYAEKGG--GFK-----SCNACNENGL 255 (266)
Q Consensus 214 ~~C~~Cgg~rfv~----C~~C~GS~K~~~~~~~--~~~-----rC~~CNEnGL 255 (266)
..|.-|.|.+-|+ |+.|+|.-|++.-+.. .+. -|++|-.|+-
T Consensus 54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 54 IPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 3788888877665 9999999888764432 222 4888877665
No 374
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.39 E-value=1.1e+02 Score=30.73 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=48.7
Q ss_pred CCCChHHHHHHHHHHhCCC---cEEEEECCCCHHH-HHHHHHHHCCCCCCCCCccEEE---e----CCEEEcchhHHHhH
Q 024534 127 RSTFEDCKAVRSILRGFRV---QLDERDLSMDSSF-LNELQGILGGGGQSKLTLPRVF---I----GGRYIGGVEEVRQL 195 (266)
Q Consensus 127 R~tC~~C~~vk~iL~~~gV---~~eErDVs~d~~~-r~EL~ellg~~~~~~~tvPqVF---I----~G~~IGG~del~~L 195 (266)
|..|||=.++.-+-+.+.. .|...-|..+++. .+-|+++....+=....-|.|. + +|..|||+.|++++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 3478888887776665543 3888888888754 4445555543222356778886 4 78999999999887
Q ss_pred Hh
Q 024534 196 NE 197 (266)
Q Consensus 196 ~e 197 (266)
.+
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 54
No 375
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=32.21 E-value=1.3e+02 Score=27.32 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=26.4
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCE
Q 024534 147 LDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGR 184 (266)
Q Consensus 147 ~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~ 184 (266)
.-..||-|-..---+|++++.. ...++|.|||-|.
T Consensus 51 clllDvrMPg~sGlelq~~L~~---~~~~~PVIfiTGh 85 (202)
T COG4566 51 CLLLDVRMPGMSGLELQDRLAE---RGIRLPVIFLTGH 85 (202)
T ss_pred eEEEecCCCCCchHHHHHHHHh---cCCCCCEEEEeCC
Confidence 5678998865445677777665 4689999999886
No 376
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=31.99 E-value=30 Score=38.24 Aligned_cols=20 Identities=35% Similarity=0.898 Sum_probs=16.8
Q ss_pred ccccccCce--------eeEEcCCCCCc
Q 024534 214 GVCNICGGY--------SFVLCGECDGS 233 (266)
Q Consensus 214 ~~C~~Cgg~--------rfv~C~~C~GS 233 (266)
..|.-||+. -||-|-+|+-.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fp 43 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFP 43 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCc
Confidence 489999987 89999999443
No 377
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=31.94 E-value=3.1e+02 Score=23.81 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE 191 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de 191 (266)
...+|++..|.. +. ...+.+..++.|+++|+...++.+..+ ...+++.+.+.. .-.|||.| |....
T Consensus 28 ~~~~i~~iptA~-~~--~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~~~~l~~-------ad~I~~~G---G~~~~ 93 (210)
T cd03129 28 AGARVLFIPTAS-GD--RDEYGEEYRAAFERLGVEVVHLLLIDT-ANDPDVVARLLE-------ADGIFVGG---GNQLR 93 (210)
T ss_pred CCCeEEEEeCCC-CC--hHHHHHHHHHHHHHcCCceEEEeccCC-CCCHHHHHHHhh-------CCEEEEcC---CcHHH
Confidence 345666666552 22 457788999999999999887776432 111333343332 22344444 22222
Q ss_pred H-HhHHhhccHHHHhhcC
Q 024534 192 V-RQLNETGELKKFVEGL 208 (266)
Q Consensus 192 l-~~L~esGeL~~lL~~~ 208 (266)
+ ..+.+.+-++.+++.+
T Consensus 94 ~~~~l~~t~~~~~i~~~~ 111 (210)
T cd03129 94 LLSVLRETPLLDAILKRV 111 (210)
T ss_pred HHHHHHhCChHHHHHHHH
Confidence 2 3455555666666553
No 378
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=33 Score=34.10 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=21.3
Q ss_pred eEEcCCCCCcceeEecCCCceecCCccccCceec
Q 024534 224 FVLCGECDGSHKVYAEKGGGFKSCNACNENGLIR 257 (266)
Q Consensus 224 fv~C~~C~GS~K~~~~~~~~~~rC~~CNEnGLir 257 (266)
..-|+.|+-|+..-.-+.-.--.|+.||||-|..
T Consensus 227 l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~ 260 (457)
T KOG2324|consen 227 LMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTK 260 (457)
T ss_pred eeecCcCCccCchhhhcCCccccCCcccCCCccc
Confidence 3448888766544332221236899999987754
No 379
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=31.36 E-value=2.1e+02 Score=21.67 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHH-------hCCCcEEEEECCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILR-------GFRVQLDERDLSM 154 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~-------~~gV~~eErDVs~ 154 (266)
+.++||+.+ -.+|+.|.....-|. ..++.+..+..+.
T Consensus 26 k~~vl~f~~----~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 26 KPVVLFFWP----TAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp SEEEEEEES----TTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred CcEEEEEeC----ccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 567777654 227999965543333 3356666666643
No 380
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.18 E-value=43 Score=27.30 Aligned_cols=20 Identities=20% Similarity=0.760 Sum_probs=12.7
Q ss_pred cccccCce------eeEEcCCCCCcc
Q 024534 215 VCNICGGY------SFVLCGECDGSH 234 (266)
Q Consensus 215 ~C~~Cgg~------rfv~C~~C~GS~ 234 (266)
.|..||-. .|..|+.|++..
T Consensus 73 ~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 73 ECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred EhhhCCCccccCCccCCcCcCCCCCc
Confidence 68888732 344488887654
No 381
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=31.15 E-value=18 Score=33.33 Aligned_cols=17 Identities=59% Similarity=1.390 Sum_probs=0.0
Q ss_pred ecCCcccc--------CceecCCCC
Q 024534 245 KSCNACNE--------NGLIRCPSC 261 (266)
Q Consensus 245 ~rC~~CNE--------nGLirCp~C 261 (266)
++|.+||| |.|.|||.|
T Consensus 171 V~CgHC~~tFLfnt~tnaLArCPHC 195 (275)
T KOG4684|consen 171 VKCGHCNETFLFNTLTNALARCPHC 195 (275)
T ss_pred EEecCccceeehhhHHHHHhcCCcc
No 382
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=31.03 E-value=58 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=15.3
Q ss_pred cHHHHhhcCCCCCC---ccccccCceeeEE
Q 024534 200 ELKKFVEGLPAAER---GVCNICGGYSFVL 226 (266)
Q Consensus 200 eL~~lL~~~~~~~~---~~C~~Cgg~rfv~ 226 (266)
.+.++|.--....+ ..|+.||-.++++
T Consensus 26 ~~~~il~Crt~~~G~~~~~C~~Cg~~~~~~ 55 (111)
T PF14319_consen 26 AVEAILACRTEALGFHRYRCEDCGHEKIVY 55 (111)
T ss_pred HHHHHHhcCCccCCcceeecCCCCceEEec
Confidence 45566653222222 2688888887665
No 383
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.97 E-value=28 Score=25.75 Aligned_cols=19 Identities=37% Similarity=1.039 Sum_probs=14.1
Q ss_pred eecCCc--cccCceecCCCCC
Q 024534 244 FKSCNA--CNENGLIRCPSCS 262 (266)
Q Consensus 244 ~~rC~~--CNEnGLirCp~C~ 262 (266)
...|.. |++.+.|+|+-|.
T Consensus 27 ~~~C~~~gC~~~s~I~C~~Ck 47 (63)
T PF04236_consen 27 AGDCDITGCNNTSFIRCAYCK 47 (63)
T ss_pred cCcCCCCCCCCcCEEEccccC
Confidence 456766 8888888888773
No 384
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=30.44 E-value=32 Score=33.90 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=39.1
Q ss_pred CCEEEcchhHHHhHHhhccHHHHhh--cCCCCCC-ccccccCceeeE-----------EcCCCCCccee
Q 024534 182 GGRYIGGVEEVRQLNETGELKKFVE--GLPAAER-GVCNICGGYSFV-----------LCGECDGSHKV 236 (266)
Q Consensus 182 ~G~~IGG~del~~L~esGeL~~lL~--~~~~~~~-~~C~~Cgg~rfv-----------~C~~C~GS~K~ 236 (266)
+|..+-|.+++.+..+.|.++.||- .+..... ..|..||...-. .|+.|++...+
T Consensus 286 ~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (403)
T TIGR03676 286 GGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELEI 354 (403)
T ss_pred CCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccCccccc
Confidence 3779999999999999999999974 3332222 268888775432 38888877443
No 385
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=29.97 E-value=91 Score=26.47 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=22.6
Q ss_pred hhHHHhHHhhccHHHHhhcCCCCCCccccccCceee--EEcCCCCCc
Q 024534 189 VEEVRQLNETGELKKFVEGLPAAERGVCNICGGYSF--VLCGECDGS 233 (266)
Q Consensus 189 ~del~~L~esGeL~~lL~~~~~~~~~~C~~Cgg~rf--v~C~~C~GS 233 (266)
.+.|..+.++|.|.- ...+.. ...|+.||-..- -.|..|...
T Consensus 60 ~~~I~~~IreGRL~~--~~~~nl-~~~CE~CG~~I~~Gr~C~~C~~~ 103 (137)
T TIGR03826 60 EKLILKFIREGRLQL--KHFPNL-GYPCERCGTSIREGRLCDSCAGE 103 (137)
T ss_pred HHHHHHHHHcCCeec--cCCCCC-cCcccccCCcCCCCCccHHHHHH
Confidence 455667777776532 222211 248999986322 237776543
No 386
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.94 E-value=30 Score=31.11 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=31.5
Q ss_pred cccccCceeeEEcCCCCCcceeEecCCC--ce--ecCCccccCc----eecCCCCCC
Q 024534 215 VCNICGGYSFVLCGECDGSHKVYAEKGG--GF--KSCNACNENG----LIRCPSCSY 263 (266)
Q Consensus 215 ~C~~Cgg~rfv~C~~C~GS~K~~~~~~~--~~--~rC~~CNEnG----LirCp~C~~ 263 (266)
.|.+||+.|-- .|+|.-++-.++.. .+ -||..||..= --||+.|..
T Consensus 19 ~C~~Cg~kr~f---~cSg~fRvNAq~K~LDvWlIYkC~~Cd~tWN~~IfeR~~~~~I 72 (203)
T COG4332 19 RCNSCGVKRAF---TCSGKFRVNAQGKVLDVWLIYKCTHCDYTWNISIFERLNVSDI 72 (203)
T ss_pred hCcccCCccee---eecCcEEEcCCCcEEEEEEEEEeeccCCccchhhhhccCcccC
Confidence 79999999874 57787777665542 23 4999998643 346666654
No 387
>PRK02935 hypothetical protein; Provisional
Probab=29.91 E-value=33 Score=28.18 Aligned_cols=26 Identities=27% Similarity=0.755 Sum_probs=19.8
Q ss_pred eEEcCCCCCcceeEecCCCceecCCccccC
Q 024534 224 FVLCGECDGSHKVYAEKGGGFKSCNACNEN 253 (266)
Q Consensus 224 fv~C~~C~GS~K~~~~~~~~~~rC~~CNEn 253 (266)
-|.|++|+--.|+... .-.|..|||-
T Consensus 70 qV~CP~C~K~TKmLGr----vD~CM~C~~P 95 (110)
T PRK02935 70 QVICPSCEKPTKMLGR----VDACMHCNQP 95 (110)
T ss_pred eeECCCCCchhhhccc----eeecCcCCCc
Confidence 3679999888887643 3479999984
No 388
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=29.46 E-value=31 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.573 Sum_probs=14.8
Q ss_pred EcCCCCCcceeEec-CCCceecCCccccC
Q 024534 226 LCGECDGSHKVYAE-KGGGFKSCNACNEN 253 (266)
Q Consensus 226 ~C~~C~GS~K~~~~-~~~~~~rC~~CNEn 253 (266)
.|.+|+..--+... .......|+.|...
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 7 RCTACGHRFEVLQKMSDDPLATCPECGGE 35 (52)
T ss_pred EeCCCCCEeEEEEecCCCCCCCCCCCCCC
Confidence 46677654333321 11235678888864
No 389
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=29.00 E-value=2e+02 Score=22.54 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=14.6
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG 142 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~ 142 (266)
+.||||+.+ .+|+.|.+....|+.
T Consensus 24 k~vvl~F~a-----~~C~~C~~~~p~l~~ 47 (126)
T cd03012 24 KVVLLDFWT-----YCCINCLHTLPYLTD 47 (126)
T ss_pred CEEEEEEEC-----CCCccHHHHHHHHHH
Confidence 345555542 499999876555543
No 390
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.67 E-value=84 Score=26.52 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=27.5
Q ss_pred CcEEEEEEc---CCCCCCCChHHHHHHHHHHh------CCCcEEEEECCC
Q 024534 114 QRVVVYFTS---LRVVRSTFEDCKAVRSILRG------FRVQLDERDLSM 154 (266)
Q Consensus 114 ~kVVIYttS---LrgvR~tC~~C~~vk~iL~~------~gV~~eErDVs~ 154 (266)
.+|.||++. .+.-+.+||+|.+|.-.+.+ .++.|...+|..
T Consensus 26 ~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 26 KTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred ceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 347776654 23447789999988766553 346688888865
No 391
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=28.54 E-value=1.7e+02 Score=24.87 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=39.5
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCc--EEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe-CCEEEcchh
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQ--LDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI-GGRYIGGVE 190 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~--~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI-~G~~IGG~d 190 (266)
..||+|-. .|+.|....++|.++.-. |...++- .+.-..+.+..|.. ....-=.+|| +|+..-|.|
T Consensus 9 ~~vvlyDG-------~C~lC~~~vrfLi~~D~~~~i~f~~~q--~e~g~~~l~~~~l~--~~~~~s~~~~~~g~~~~~sd 77 (137)
T COG3011 9 DLVVLYDG-------VCPLCDGWVRFLIRRDQGGRIRFAALQ--SEPGQALLEAAGLD--PEDVDSVLLVEAGQLLVGSD 77 (137)
T ss_pred CEEEEECC-------cchhHHHHHHHHHHhccCCcEEEEecc--CchhhhHHhhcCCC--hhhhheeeEecCCceEeccH
Confidence 55777753 899999888888877444 5555553 33334555555541 0111223344 445555666
Q ss_pred HHHh
Q 024534 191 EVRQ 194 (266)
Q Consensus 191 el~~ 194 (266)
.+.+
T Consensus 78 A~~~ 81 (137)
T COG3011 78 AAIR 81 (137)
T ss_pred HHHH
Confidence 5544
No 392
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.21 E-value=43 Score=31.74 Aligned_cols=57 Identities=21% Similarity=0.092 Sum_probs=28.1
Q ss_pred CCCccccCcceec-ccCCCCCCCcccCcccccccccCCCCCCCCCCCCCCCCC-CCCceeEEEeecc
Q 024534 1 MWRSYITSPVKIH-STSSHSHSSFHCSSFKDIQSLCTDDPTPLHNNNNNNNTS-RKPSVFHRARIVH 65 (266)
Q Consensus 1 m~~~~~~~~~~~~-~~~~~~~~~~~~~~~kdi~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~s~ 65 (266)
||.+|..+....+ .++++ +=.++.+.-.++.+-....|.. -.+| +..++++++...+
T Consensus 23 ~~~~~k~~~~~~~~~~~~~-----~~~~~i~s~e~~~~l~~~~~~~---~~~p~~~~~~~~~~~~~~ 81 (281)
T KOG2824|consen 23 VTVSGKESKIAPIRDSSSP-----TGPEVINSWELMLDLDDELHRS---CKTPITPTSVSLRVKALN 81 (281)
T ss_pred eecccccccccccccCCCC-----CchhhhhhhhhccCcccccccc---ccCCCCCccccccccccc
Confidence 5777776655444 22222 1145556566665544433221 1222 2446777777555
No 393
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=28.04 E-value=34 Score=22.27 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=11.9
Q ss_pred cCCCCCccee--EecCCCceecCCcccc
Q 024534 227 CGECDGSHKV--YAEKGGGFKSCNACNE 252 (266)
Q Consensus 227 C~~C~GS~K~--~~~~~~~~~rC~~CNE 252 (266)
|+.|.+.-.. ...++.....|++|..
T Consensus 3 C~~CG~~l~~~ip~gd~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDRERLVCPACGF 30 (34)
T ss_dssp -TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred cccccChhhhhcCCCCCccceECCCCCC
Confidence 7888887433 3233335578888863
No 394
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=28.03 E-value=35 Score=35.75 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=8.8
Q ss_pred EEcCCCCCcceeE
Q 024534 225 VLCGECDGSHKVY 237 (266)
Q Consensus 225 v~C~~C~GS~K~~ 237 (266)
+||+.|.|.-++-
T Consensus 54 ~pc~~c~gkG~V~ 66 (715)
T COG1107 54 IPCPKCRGKGTVT 66 (715)
T ss_pred CCCCeeccceeEE
Confidence 5777777776554
No 395
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=27.88 E-value=32 Score=32.23 Aligned_cols=10 Identities=60% Similarity=1.358 Sum_probs=7.1
Q ss_pred CceecCCCCC
Q 024534 253 NGLIRCPSCS 262 (266)
Q Consensus 253 nGLirCp~C~ 262 (266)
|+|.|||.|.
T Consensus 175 ~tlARCPHCr 184 (256)
T PF09788_consen 175 NTLARCPHCR 184 (256)
T ss_pred CccccCCCCc
Confidence 5777777773
No 396
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=27.10 E-value=36 Score=31.11 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=18.5
Q ss_pred CceeeEEcCCCCCcceeEecCC-CceecCCccccCceec
Q 024534 220 GGYSFVLCGECDGSHKVYAEKG-GGFKSCNACNENGLIR 257 (266)
Q Consensus 220 gg~rfv~C~~C~GS~K~~~~~~-~~~~rC~~CNEnGLir 257 (266)
|..+.+.|..|+..... .+.. ....+|+.|+.+|++|
T Consensus 113 G~~~~~~C~~C~~~~~~-~~~~~~~~p~C~~Cg~~g~lr 150 (242)
T PTZ00408 113 GELLKVRCTATGHVFDW-TEDVVHGSSRCKCCGCVGTLR 150 (242)
T ss_pred CccceEEECCCCcccCc-hhhhhcCCCccccCCCCCCCC
Confidence 45555666766532111 1100 1235688887766655
No 397
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=27.04 E-value=43 Score=31.08 Aligned_cols=34 Identities=26% Similarity=0.800 Sum_probs=17.2
Q ss_pred ccccccC--------------ceeeEEcCCCCCcceeEecCCCceecCCccccC
Q 024534 214 GVCNICG--------------GYSFVLCGECDGSHKVYAEKGGGFKSCNACNEN 253 (266)
Q Consensus 214 ~~C~~Cg--------------g~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEn 253 (266)
+.|-.|| |.||.-|+.|+..-+. ...+|+.|.+.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~------~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF------VRIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--------TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee------cCCCCcCCCCC
Confidence 5798896 5799999999665322 12467777654
No 398
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=27.03 E-value=1.5e+02 Score=29.07 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=58.9
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEcchhHH
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIGGVEEV 192 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~del 192 (266)
..+++||.. +-..++.+..+|...++.+..+.=.+...-|.++.+.+........--=.++--|--|++.+-+
T Consensus 335 ~~~~IVF~~-------s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~V 407 (475)
T PRK01297 335 WERVMVFAN-------RKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHV 407 (475)
T ss_pred CCeEEEEeC-------CHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEE
Confidence 358999986 4567888889999999888777766777767677666643000000001223355566666655
Q ss_pred HhHHhhccHHHHhhcCCCCC
Q 024534 193 RQLNETGELKKFVEGLPAAE 212 (266)
Q Consensus 193 ~~L~esGeL~~lL~~~~~~~ 212 (266)
..+.--+....+++..|+..
T Consensus 408 I~~~~P~s~~~y~Qr~GRaG 427 (475)
T PRK01297 408 INFTLPEDPDDYVHRIGRTG 427 (475)
T ss_pred EEeCCCCCHHHHHHhhCccC
Confidence 55444567778888877654
No 399
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.97 E-value=30 Score=28.62 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=21.0
Q ss_pred eeEEcCCCCCcceeEecCCCceecCCccccCc
Q 024534 223 SFVLCGECDGSHKVYAEKGGGFKSCNACNENG 254 (266)
Q Consensus 223 rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnG 254 (266)
--|.|++|+--.|..... -+|..|+|--
T Consensus 68 v~V~CP~C~K~TKmLGr~----D~CM~C~~pL 95 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRV----DACMHCKEPL 95 (114)
T ss_pred eeeECCCCCChHhhhchh----hccCcCCCcC
Confidence 456799998888877543 4799999853
No 400
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.30 E-value=43 Score=37.07 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=9.6
Q ss_pred HHHHHHHhCCCcEE
Q 024534 135 AVRSILRGFRVQLD 148 (266)
Q Consensus 135 ~vk~iL~~~gV~~e 148 (266)
.+|++|+.++|.+.
T Consensus 506 ~~k~~LE~L~v~H~ 519 (1121)
T PRK04023 506 GVKRILEKLGVPHR 519 (1121)
T ss_pred HHHHHHHHhCCceE
Confidence 67777777777643
No 401
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=26.07 E-value=97 Score=28.81 Aligned_cols=91 Identities=10% Similarity=0.204 Sum_probs=50.3
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEE------ECCCCHHHHHHHHHHHCCCCCCCCC---ccEEEeCCEE
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDER------DLSMDSSFLNELQGILGGGGQSKLT---LPRVFIGGRY 185 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eEr------DVs~d~~~r~EL~ellg~~~~~~~t---vPqVFI~G~~ 185 (266)
++.||+.- +=.+-..+...|+..||+|+.. .|.-+.+...+.+..+...|-.... +=.+|=++..
T Consensus 20 ~~~LysgL------~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~~~Ar~~La~~GLP~~g~~~~~~lFd~~~l 93 (249)
T PRK15348 20 DVDLYRSL------PEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQL 93 (249)
T ss_pred ChHHHcCC------CHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHHHHHHHHHHHcCCCCCCCccHHHhCCcccc
Confidence 46788743 5577889999999999999752 1222344444555555431111111 1124433333
Q ss_pred EcchhHH-Hh--HHhhccHHHHhhcCCCC
Q 024534 186 IGGVEEV-RQ--LNETGELKKFVEGLPAA 211 (266)
Q Consensus 186 IGG~del-~~--L~esGeL~~lL~~~~~~ 211 (266)
+-+..|. ++ ...+|+|.+.|+.+.-+
T Consensus 94 ~~t~te~~qki~y~regELarTI~~idgV 122 (249)
T PRK15348 94 VVSPQEEQQKINFLKEQRIEGMLSQMEGV 122 (249)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 3223332 22 34479999999876644
No 402
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=26.04 E-value=83 Score=26.31 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=16.3
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHH
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSIL 140 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL 140 (266)
...|+||+.+ .+|++|++..+..
T Consensus 23 ~Kpvmv~f~s-----dwC~~Ck~l~k~~ 45 (130)
T cd02960 23 NKPLMVIHHL-----EDCPHSQALKKAF 45 (130)
T ss_pred CCeEEEEEeC-----CcCHhHHHHHHHh
Confidence 3457777653 6999999877653
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=25.87 E-value=74 Score=37.43 Aligned_cols=51 Identities=27% Similarity=0.554 Sum_probs=32.2
Q ss_pred EEEcchhHHHhHHhhccHHHHhhcCCCC------CCccccccCceee---------EEcCCCCCcce
Q 024534 184 RYIGGVEEVRQLNETGELKKFVEGLPAA------ERGVCNICGGYSF---------VLCGECDGSHK 235 (266)
Q Consensus 184 ~~IGG~del~~L~esGeL~~lL~~~~~~------~~~~C~~Cgg~rf---------v~C~~C~GS~K 235 (266)
.|+|=+|++++++.+=...+.. ++++. .++.|..|.|.+. +.|+.|+|.+.
T Consensus 686 tY~g~fd~IR~lFA~~~~ak~~-g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 686 TYIKAFDDLRELFAEQPRSKRL-GLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred eehhhhHHHHHHHhhChHHHHc-CCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 4556677888776543443422 22221 2458999988874 58999999763
No 404
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=25.78 E-value=1.1e+02 Score=23.83 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=29.0
Q ss_pred HHhHHhhccHHHHhhcCCCCCCccccccCceeeEEcCCCCCcceeEe-cCCCceecCCccccCce
Q 024534 192 VRQLNETGELKKFVEGLPAAERGVCNICGGYSFVLCGECDGSHKVYA-EKGGGFKSCNACNENGL 255 (266)
Q Consensus 192 l~~L~esGeL~~lL~~~~~~~~~~C~~Cgg~rfv~C~~C~GS~K~~~-~~~~~~~rC~~CNEnGL 255 (266)
+.++-+.-.|..+++..-.. ..=|.....+|+-|+...-++. ....+.-+|-.|++.|-
T Consensus 6 ~~~i~~~~~i~~v~~~~~~l-----~~~G~~~~~~CPfH~d~~pS~~i~~~k~~~~Cf~Cg~~Gd 65 (97)
T PF01807_consen 6 IEEIKSRIDIVDVIERYIKL-----KRRGREYRCLCPFHDDKTPSFSINPDKNRFKCFGCGKGGD 65 (97)
T ss_dssp HHHHHHCS-HHHHHCCCS-------EEETTEEEE--SSS--SS--EEEETTTTEEEETTT--EE-
T ss_pred HHHHHHhCCHHHHHHHhccc-----cccCCeEEEECcCCCCCCCceEEECCCCeEEECCCCCCCc
Confidence 44555566788888775211 1225566778999987654433 11124678999998874
No 405
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=25.36 E-value=91 Score=25.51 Aligned_cols=37 Identities=16% Similarity=0.424 Sum_probs=24.3
Q ss_pred CCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhC------CCcEEEEECC
Q 024534 111 GADQRVVVYFTSLRVVRSTFEDCKAVRSILRGF------RVQLDERDLS 153 (266)
Q Consensus 111 ~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~------gV~~eErDVs 153 (266)
.+...|++|+- ..||+|.++...+..+ +|.|+.+.+.
T Consensus 14 ~~~~~i~~f~D------~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFS------YGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEEC------CCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 34566777774 5999999776666533 4556655554
No 406
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=25.32 E-value=61 Score=35.59 Aligned_cols=22 Identities=32% Similarity=0.889 Sum_probs=17.5
Q ss_pred ccccccCceeeE------------EcCCCCCcce
Q 024534 214 GVCNICGGYSFV------------LCGECDGSHK 235 (266)
Q Consensus 214 ~~C~~Cgg~rfv------------~C~~C~GS~K 235 (266)
+.|..|.|.+++ +|+.|+|.+-
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCccc
Confidence 579999988654 5999999863
No 407
>PRK04011 peptide chain release factor 1; Provisional
Probab=25.28 E-value=41 Score=33.16 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=35.4
Q ss_pred CCEEEcchhHHHhHHhhccHHHHhh--cCCCCCC-ccccccCceeeE-----------EcCCCCCccee
Q 024534 182 GGRYIGGVEEVRQLNETGELKKFVE--GLPAAER-GVCNICGGYSFV-----------LCGECDGSHKV 236 (266)
Q Consensus 182 ~G~~IGG~del~~L~esGeL~~lL~--~~~~~~~-~~C~~Cgg~rfv-----------~C~~C~GS~K~ 236 (266)
+|..+-|.+++.+..+.|.++.||- .+..... ..|..||-..-. .|+.|++...+
T Consensus 294 ~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 362 (411)
T PRK04011 294 GGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEI 362 (411)
T ss_pred CCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCccccc
Confidence 3678889999999999999998873 3332211 257777654322 46666665433
No 408
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=24.85 E-value=3.8e+02 Score=21.82 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=37.5
Q ss_pred cEEEEEEcCCCCCCCCh---HHHHHHHHHHhC--CCcEEEEECCCCHH-HHHHHHHHHCCCCCCCCCccEE--EeCCE
Q 024534 115 RVVVYFTSLRVVRSTFE---DCKAVRSILRGF--RVQLDERDLSMDSS-FLNELQGILGGGGQSKLTLPRV--FIGGR 184 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~---~C~~vk~iL~~~--gV~~eErDVs~d~~-~r~EL~ellg~~~~~~~tvPqV--FI~G~ 184 (266)
-+|-|+.+ . ++|. +|+++-.-+... .|.+-++|++.-.+ --.+|.++.+- ....+|.| |.+|.
T Consensus 21 vlV~F~A~---~-Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I---~~~gyPTl~lF~~g~ 91 (116)
T cd03007 21 SLVKFDTA---Y-PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKL---DKESYPVIYLFHGGD 91 (116)
T ss_pred EEEEEeCC---C-CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCC---CcCCCCEEEEEeCCC
Confidence 45666652 1 5787 777776555432 37788888843111 12567777775 12289977 66773
No 409
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=24.80 E-value=2.5e+02 Score=28.94 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=34.2
Q ss_pred CCCCCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCH
Q 024534 109 IPGADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDS 156 (266)
Q Consensus 109 ~p~~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~ 156 (266)
++....+|.|.+-| ...-+..+++..+|+.+||+|+.+=++.|+
T Consensus 406 ~~~~~~~v~i~~gs----~sd~~~~~~~~~~l~~~g~~~~~~v~sahr 449 (577)
T PLN02948 406 LPKGTPLVGIIMGS----DSDLPTMKDAAEILDSFGVPYEVTIVSAHR 449 (577)
T ss_pred CCCCCCeEEEEECc----hhhHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 44555677777655 346788999999999999999977777764
No 410
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=24.49 E-value=1.2e+02 Score=20.52 Aligned_cols=37 Identities=24% Similarity=0.632 Sum_probs=25.6
Q ss_pred eeEEcCCCCCcceeEecCC-CceecCCccccCceecCCC
Q 024534 223 SFVLCGECDGSHKVYAEKG-GGFKSCNACNENGLIRCPS 260 (266)
Q Consensus 223 rfv~C~~C~GS~K~~~~~~-~~~~rC~~CNEnGLirCp~ 260 (266)
+.+.|..|+........++ ...-+|...++.|. .|+.
T Consensus 4 g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~~-~C~~ 41 (58)
T PF13408_consen 4 GLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKGK-GCPN 41 (58)
T ss_pred CcEEcccCCcEeEEEECCCCceEEEcCCCcCCCC-CCCC
Confidence 4677888887766655432 24679999998886 3653
No 411
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=24.48 E-value=2.8e+02 Score=20.14 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=38.4
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEe
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFI 181 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI 181 (266)
..+|.+.+=+ .-..=.+.++.++..+..+..+-+..+. ..+|.+.++- ..+|.++|
T Consensus 33 ~~~v~~v~Vs------~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~i-----~~iP~~~l 88 (95)
T PF13905_consen 33 KDDVEFVFVS------LDEDEEEWKKFLKKNNFPWYNVPFDDDN--NSELLKKYGI-----NGIPTLVL 88 (95)
T ss_dssp TTTEEEEEEE-------SSSHHHHHHHHHTCTTSSEEEETTTHH--HHHHHHHTT------TSSSEEEE
T ss_pred CCCEEEEEEE------eCCCHHHHHHHHHhcCCCceEEeeCcch--HHHHHHHCCC-----CcCCEEEE
Confidence 3455555544 2355678899999998887776665433 5788888886 78999986
No 412
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=24.43 E-value=43 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.465 Sum_probs=26.2
Q ss_pred cHHHHhhcCCCCCCccccccCceeeEEcCCCCCcceeEecC-------------CCceecCCcccc
Q 024534 200 ELKKFVEGLPAAERGVCNICGGYSFVLCGECDGSHKVYAEK-------------GGGFKSCNACNE 252 (266)
Q Consensus 200 eL~~lL~~~~~~~~~~C~~Cgg~rfv~C~~C~GS~K~~~~~-------------~~~~~rC~~CNE 252 (266)
.|.++++.++..-. -...|--|..|||.-..+..+ ...|-+|+.|+.
T Consensus 73 QL~ev~~~~~l~~~------~~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~k 132 (147)
T PF01927_consen 73 QLREVLERFGLKLR------LDPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGK 132 (147)
T ss_pred HHHHHHHHcCCccc------cCCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCC
Confidence 46677776654210 023466788888853332211 124889999874
No 413
>PLN02412 probable glutathione peroxidase
Probab=24.29 E-value=2.4e+02 Score=23.71 Aligned_cols=7 Identities=0% Similarity=-0.206 Sum_probs=6.1
Q ss_pred CChHHHH
Q 024534 129 TFEDCKA 135 (266)
Q Consensus 129 tC~~C~~ 135 (266)
+|+.|.+
T Consensus 40 ~C~~c~~ 46 (167)
T PLN02412 40 KCGLTDS 46 (167)
T ss_pred CCCChHH
Confidence 8999985
No 414
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.25 E-value=2.3e+02 Score=25.13 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=34.8
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhC---------CCcEEEEECCCCH------------HHHHHHHHHHCCCCCCC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGF---------RVQLDERDLSMDS------------SFLNELQGILGGGGQSK 173 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~---------gV~~eErDVs~d~------------~~r~EL~ellg~~~~~~ 173 (266)
-+++|. +++|++|.+.++-+... .+.+.+++++... .-.+||.+.++-
T Consensus 45 lllmfe------s~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v----- 113 (182)
T COG2143 45 LLLMFE------SNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV----- 113 (182)
T ss_pred EEEEEc------CCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc-----
Confidence 355665 56999999877665432 1223445554211 123588888775
Q ss_pred CCccEE-EeCCE
Q 024534 174 LTLPRV-FIGGR 184 (266)
Q Consensus 174 ~tvPqV-FI~G~ 184 (266)
.+.|.+ |.|++
T Consensus 114 rstPtfvFfdk~ 125 (182)
T COG2143 114 RSTPTFVFFDKT 125 (182)
T ss_pred ccCceEEEEcCC
Confidence 677776 55554
No 415
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=24.12 E-value=78 Score=26.06 Aligned_cols=9 Identities=22% Similarity=0.611 Sum_probs=6.0
Q ss_pred eecCCcccc
Q 024534 244 FKSCNACNE 252 (266)
Q Consensus 244 ~~rC~~CNE 252 (266)
...|+.|+.
T Consensus 60 ~~~Cp~C~~ 68 (140)
T COG0551 60 GVKCPKCGK 68 (140)
T ss_pred ceeCCCCCC
Confidence 367777774
No 416
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=23.86 E-value=39 Score=24.91 Aligned_cols=18 Identities=33% Similarity=1.073 Sum_probs=13.6
Q ss_pred eecCCccccCcee-cCCCC
Q 024534 244 FKSCNACNENGLI-RCPSC 261 (266)
Q Consensus 244 ~~rC~~CNEnGLi-rCp~C 261 (266)
.++|++|++--|- .||.|
T Consensus 5 ~rkC~~cg~YTLke~Cp~C 23 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVC 23 (59)
T ss_pred hhcCcCCCceeecccCCCC
Confidence 3577888887777 78887
No 417
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=23.75 E-value=54 Score=27.05 Aligned_cols=29 Identities=28% Similarity=0.725 Sum_probs=18.5
Q ss_pred eeeEEcC--CCCCcceeEecCCCceecCCccccC
Q 024534 222 YSFVLCG--ECDGSHKVYAEKGGGFKSCNACNEN 253 (266)
Q Consensus 222 ~rfv~C~--~C~GS~K~~~~~~~~~~rC~~CNEn 253 (266)
.-|.-|+ .|+. |+..... +.-+|..||++
T Consensus 16 ~~Y~aC~~~~C~k--Kv~~~~~-~~y~C~~C~~~ 46 (146)
T PF08646_consen 16 WYYPACPNEKCNK--KVTENGD-GSYRCEKCNKT 46 (146)
T ss_dssp TEEEE-TSTTTS---B-EEETT-TEEEETTTTEE
T ss_pred cEECCCCCccCCC--EeecCCC-cEEECCCCCCc
Confidence 5677799 9984 5555533 56789999875
No 418
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=23.74 E-value=1.8e+02 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHhC-----CCcEEEEECCC
Q 024534 129 TFEDCKAVRSILRGF-----RVQLDERDLSM 154 (266)
Q Consensus 129 tC~~C~~vk~iL~~~-----gV~~eErDVs~ 154 (266)
+|..+.+++-+|+.+ .+.|.-+||+.
T Consensus 84 GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 84 GSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 889999999999877 36689999975
No 419
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=23.65 E-value=1.2e+02 Score=33.52 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCCccEEEeCCEEEcchhHHHhHHhhccH
Q 024534 173 KLTLPRVFIGGRYIGGVEEVRQLNETGEL 201 (266)
Q Consensus 173 ~~tvPqVFI~G~~IGG~del~~L~esGeL 201 (266)
..++|-||..|..++|...+.....+|..
T Consensus 717 ~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~ 745 (1006)
T PRK12775 717 STNLPGVFAGGDIVTGGATVILAMGAGRR 745 (1006)
T ss_pred CCCCCCEEEecCcCCCccHHHHHHHHHHH
Confidence 46799999999999888877766666655
No 420
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=23.25 E-value=45 Score=22.02 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=16.1
Q ss_pred EEcCCCCCcceeEecCC--------CceecCCcccc
Q 024534 225 VLCGECDGSHKVYAEKG--------GGFKSCNACNE 252 (266)
Q Consensus 225 v~C~~C~GS~K~~~~~~--------~~~~rC~~CNE 252 (266)
+.|+.|+...=++.+.. ..|-+|.+|+.
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~ 36 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGH 36 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCC
Confidence 36899977765554221 14789999975
No 421
>PHA02558 uvsW UvsW helicase; Provisional
Probab=23.14 E-value=4e+02 Score=26.63 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=43.0
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEEeCCEEEc
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVFIGGRYIG 187 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVFI~G~~IG 187 (266)
.+++|++.. -.+++.+...|...++++..+.=.+....|+++.+.... .....|...+.++|
T Consensus 345 ~~~lV~~~~-------~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-----~~~~vLvaT~~~l~ 406 (501)
T PHA02558 345 ENTFVMFKY-------VEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-----GKGIIIVASYGVFS 406 (501)
T ss_pred CCEEEEEEE-------HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-----CCCeEEEEEcceec
Confidence 455555543 348999999999999999888888887777777666653 33334444555655
No 422
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=23.11 E-value=3.2e+02 Score=21.26 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=19.0
Q ss_pred CcEEEEEEcCCCCCCCChHHHHH-------HHHHHhCCCcEEEEECC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAV-------RSILRGFRVQLDERDLS 153 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~v-------k~iL~~~gV~~eErDVs 153 (266)
+.++|++.. ..+|+.|... ..-|+..++.+.-+.++
T Consensus 24 k~~ll~f~~----~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d 66 (140)
T cd03017 24 KPVVLYFYP----KDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD 66 (140)
T ss_pred CcEEEEEeC----CCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 445555531 1378999753 23334446665555553
No 423
>PTZ00110 helicase; Provisional
Probab=22.68 E-value=2.7e+02 Score=28.24 Aligned_cols=89 Identities=9% Similarity=0.022 Sum_probs=56.5
Q ss_pred CCCcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEEE-----eCCEEE
Q 024534 112 ADQRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRVF-----IGGRYI 186 (266)
Q Consensus 112 ~~~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqVF-----I~G~~I 186 (266)
...+++||.. +...|+.+.+.|+..++....+.=+++..-|+++.+.+.. ...+.|+ --|--|
T Consensus 376 ~~~k~LIF~~-------t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-----G~~~ILVaTdv~~rGIDi 443 (545)
T PTZ00110 376 DGDKILIFVE-------TKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-----GKSPIMIATDVASRGLDV 443 (545)
T ss_pred cCCeEEEEec-------ChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-----CCCcEEEEcchhhcCCCc
Confidence 3468999986 5678999999999999988777777777777776666543 2233222 133334
Q ss_pred cchhHHHhHHhhccHHHHhhcCCCCC
Q 024534 187 GGVEEVRQLNETGELKKFVEGLPAAE 212 (266)
Q Consensus 187 GG~del~~L~esGeL~~lL~~~~~~~ 212 (266)
.+.+-|..+.--..+..++..+|+..
T Consensus 444 ~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 444 KDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 44443433333456667777776653
No 424
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=22.58 E-value=4.2e+02 Score=21.46 Aligned_cols=71 Identities=24% Similarity=0.440 Sum_probs=43.1
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHH----hCCCcEEEEECCCCHHHHHHHHHHHCCCCCCCCCccEE--EeCCEEEc
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILR----GFRVQLDERDLSMDSSFLNELQGILGGGGQSKLTLPRV--FIGGRYIG 187 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~----~~gV~~eErDVs~d~~~r~EL~ellg~~~~~~~tvPqV--FI~G~~IG 187 (266)
...|+|.++ --..++.+..+--+|= .++-.+.---+. .+..++|++++|- ..+|.+ |-+|+|+|
T Consensus 27 ~~~vlf~~g---Dp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv-----~~~PaLvf~R~g~~lG 96 (107)
T PF07449_consen 27 GDAVLFFAG---DPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGV-----RRWPALVFFRDGRYLG 96 (107)
T ss_dssp SCEEEEESS----TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT------TSSSEEEEEETTEEEE
T ss_pred CcEEEEECC---CCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCC-----ccCCeEEEEECCEEEE
Confidence 446666644 3444555555444444 444444433332 5667899999997 778876 56999999
Q ss_pred chhHHHh
Q 024534 188 GVEEVRQ 194 (266)
Q Consensus 188 G~del~~ 194 (266)
-...++.
T Consensus 97 ~i~gi~d 103 (107)
T PF07449_consen 97 AIEGIRD 103 (107)
T ss_dssp EEESSST
T ss_pred EecCeec
Confidence 7765543
No 425
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=22.31 E-value=3.8e+02 Score=20.80 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=19.7
Q ss_pred CCcEEEEEEcCCCCCCCChHHHHHHHHHH-------hCCCcEEEEECC
Q 024534 113 DQRVVVYFTSLRVVRSTFEDCKAVRSILR-------GFRVQLDERDLS 153 (266)
Q Consensus 113 ~~kVVIYttSLrgvR~tC~~C~~vk~iL~-------~~gV~~eErDVs 153 (266)
.+.++||+.. ..+|+.|.....-|. ..++.+.-+.++
T Consensus 22 gk~~ll~f~~----~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 22 GKWVVLFFYP----KDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCeEEEEEeC----CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456666542 237888875433332 345666666553
No 426
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=21.99 E-value=1.3e+02 Score=31.76 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHH-HHHHHHHHCCCCCCCCCccEEEeCCEEEcchhH-
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSF-LNELQGILGGGGQSKLTLPRVFIGGRYIGGVEE- 191 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~-r~EL~ellg~~~~~~~tvPqVFI~G~~IGG~de- 191 (266)
.+|.|.+++ ..-..|.+|-..|++.||.++.+|+..-..+ .+.+..+... .--.|.+.+..+||+-+
T Consensus 545 ~dvtIva~G-----~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~------~~~vVt~Ee~~~GG~Gs~ 613 (641)
T PLN02234 545 ERVALLGYG-----SAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKS------HEVLITVEEGSIGGFGSH 613 (641)
T ss_pred CCEEEEEec-----HHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHh------CCEEEEECCCCCCcHHHH
Confidence 467777664 2457899999999999999999999721111 2223333322 11245566666799854
Q ss_pred HH-hHHhhccHHHHh
Q 024534 192 VR-QLNETGELKKFV 205 (266)
Q Consensus 192 l~-~L~esGeL~~lL 205 (266)
|. .+.|+|.+++.+
T Consensus 614 Va~~l~e~~~~~~~~ 628 (641)
T PLN02234 614 VVQFLALDGLLDGKL 628 (641)
T ss_pred HHHHHHHcCCCCCCc
Confidence 33 455666555544
No 427
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=21.82 E-value=83 Score=21.11 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.9
Q ss_pred eecCCcccc
Q 024534 244 FKSCNACNE 252 (266)
Q Consensus 244 ~~rC~~CNE 252 (266)
..+|+.|+.
T Consensus 21 ~~~Cp~CG~ 29 (46)
T PRK00398 21 GVRCPYCGY 29 (46)
T ss_pred ceECCCCCC
Confidence 455666554
No 428
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=21.81 E-value=2.3e+02 Score=25.91 Aligned_cols=25 Identities=8% Similarity=-0.182 Sum_probs=14.9
Q ss_pred CCChHHHHHHHH-------HHhCCCcEEEEEC
Q 024534 128 STFEDCKAVRSI-------LRGFRVQLDERDL 152 (266)
Q Consensus 128 ~tC~~C~~vk~i-------L~~~gV~~eErDV 152 (266)
.+|+.|...... +...|+.+.-+++
T Consensus 109 swCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 109 SKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 399999753322 3344666665554
No 429
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=21.74 E-value=56 Score=24.12 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=10.4
Q ss_pred eeEecCCCceecCCccc
Q 024534 235 KVYAEKGGGFKSCNACN 251 (266)
Q Consensus 235 K~~~~~~~~~~rC~~CN 251 (266)
|+-+.++..|+|||-|.
T Consensus 8 Kv~~RDGE~~lrCPRC~ 24 (65)
T COG4049 8 KVRDRDGEEFLRCPRCG 24 (65)
T ss_pred EeeccCCceeeeCCchh
Confidence 34444444678888875
No 430
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.70 E-value=2.2e+02 Score=26.66 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=36.8
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHH
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGIL 166 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~EL~ell 166 (266)
++.+......|-...-....+++..|+..++.+.++-........+..++..
T Consensus 4 ~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~ 55 (301)
T COG1597 4 KALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAA 55 (301)
T ss_pred eEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHH
Confidence 4445555556666667889999999999999998888876534445555544
No 431
>PLN02790 transketolase
Probab=21.55 E-value=2.5e+02 Score=29.37 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCCHHHHHH----HHHHHCCCCCCCCCccEEEeCCEEEcch
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNE----LQGILGGGGQSKLTLPRVFIGGRYIGGV 189 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d~~~r~E----L~ellg~~~~~~~tvPqVFI~G~~IGG~ 189 (266)
.+|+|..+. ..-..+.++.++|++.||....+|+..-.-+-++ ..+.++. ..-+.|.|..-.++|+
T Consensus 541 ~dv~iia~G-----~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~-----~~~~vvtiE~~~~~G~ 610 (654)
T PLN02790 541 PDLILIGTG-----SELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPS-----SVTARVSVEAGSTFGW 610 (654)
T ss_pred CCEEEEEcC-----HHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhcc-----ccceEEEecCccchhH
Confidence 567777664 2457799999999999999999998643323222 2233332 2334566655555665
Q ss_pred hHHH----------hHHhhccHHHHhhcCCC
Q 024534 190 EEVR----------QLNETGELKKFVEGLPA 210 (266)
Q Consensus 190 del~----------~L~esGeL~~lL~~~~~ 210 (266)
.+.. ..-++|..+++++.++.
T Consensus 611 ~~~~~~~~~~igvd~Fg~sg~~~~l~~~~Gl 641 (654)
T PLN02790 611 EKYVGSKGKVIGVDRFGASAPAGILYKEFGF 641 (654)
T ss_pred HHhcCCCceEEEeCCCcCcCCHHHHHHHhCC
Confidence 4421 22345666666655543
No 432
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=21.42 E-value=1e+02 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=31.6
Q ss_pred cEEEEEEcCCCCCCCChHHHHHHHHHHhCCCcEEEEECCCC
Q 024534 115 RVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMD 155 (266)
Q Consensus 115 kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~~eErDVs~d 155 (266)
+|++...|.|-...+-.--+.+.+.|++.+++++.+|+...
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 57777777665555556677888888888999999999863
No 433
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=21.37 E-value=41 Score=25.22 Aligned_cols=30 Identities=30% Similarity=0.754 Sum_probs=14.8
Q ss_pred cCCCCCc-ceeEe----cCCCceecCCccccCcee
Q 024534 227 CGECDGS-HKVYA----EKGGGFKSCNACNENGLI 256 (266)
Q Consensus 227 C~~C~GS-~K~~~----~~~~~~~rC~~CNEnGLi 256 (266)
|..|+.. .|.++ +++..+.+|+.|+..=||
T Consensus 7 C~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlI 41 (66)
T PF05180_consen 7 CNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLI 41 (66)
T ss_dssp ETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES
T ss_pred cCCCCCccceeeCHHHHhCCeEEEECCCCcceeee
Confidence 6666554 34443 233356788888765544
No 434
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.83 E-value=71 Score=25.06 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEcCCCCCcceeEecCCCceecCCcccc
Q 024534 225 VLCGECDGSHKVYAEKGGGFKSCNACNE 252 (266)
Q Consensus 225 v~C~~C~GS~K~~~~~~~~~~rC~~CNE 252 (266)
.+|+.|+-+.......+..+-.||.|--
T Consensus 2 llCP~C~v~l~~~~rs~vEiD~CPrCrG 29 (88)
T COG3809 2 LLCPICGVELVMSVRSGVEIDYCPRCRG 29 (88)
T ss_pred cccCcCCceeeeeeecCceeeeCCcccc
Confidence 4688888887766665556778888854
No 435
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=20.59 E-value=3.4e+02 Score=22.58 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=20.3
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHh-------CCCcEEEEEC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRG-------FRVQLDERDL 152 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~-------~gV~~eErDV 152 (266)
+.||||+.. -.+|+.|......|.+ .++.+.-+.+
T Consensus 30 k~vvl~F~~----~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~ 71 (173)
T cd03015 30 KWVVLFFYP----LDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVST 71 (173)
T ss_pred CEEEEEEEC----CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 457777742 1279999875555543 4555555444
No 436
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=20.49 E-value=1.1e+02 Score=22.53 Aligned_cols=28 Identities=21% Similarity=0.609 Sum_probs=20.2
Q ss_pred eEEcCCCCCcceeEecCCCceecCCcccc
Q 024534 224 FVLCGECDGSHKVYAEKGGGFKSCNACNE 252 (266)
Q Consensus 224 fv~C~~C~GS~K~~~~~~~~~~rC~~CNE 252 (266)
-|.|+.|+--.-+|+... ..++|..|..
T Consensus 11 ~VkCp~C~n~q~vFsha~-t~V~C~~Cg~ 38 (59)
T PRK00415 11 KVKCPDCGNEQVVFSHAS-TVVRCLVCGK 38 (59)
T ss_pred EEECCCCCCeEEEEecCC-cEEECcccCC
Confidence 356888887777777665 5678888864
No 437
>PRK00420 hypothetical protein; Validated
Probab=20.42 E-value=59 Score=26.76 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=8.0
Q ss_pred ceecCCccccC
Q 024534 243 GFKSCNACNEN 253 (266)
Q Consensus 243 ~~~rC~~CNEn 253 (266)
+...|+.|.+.
T Consensus 39 g~~~Cp~Cg~~ 49 (112)
T PRK00420 39 GEVVCPVHGKV 49 (112)
T ss_pred CceECCCCCCe
Confidence 56778888774
No 438
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=20.41 E-value=1.1e+02 Score=23.19 Aligned_cols=30 Identities=23% Similarity=0.701 Sum_probs=20.2
Q ss_pred eeEE---cCCCCCcceeE--ecCCCceecCCcccc
Q 024534 223 SFVL---CGECDGSHKVY--AEKGGGFKSCNACNE 252 (266)
Q Consensus 223 rfv~---C~~C~GS~K~~--~~~~~~~~rC~~CNE 252 (266)
|||- |+.|+.--++. .+++...+.|-+|.-
T Consensus 4 rFIAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy 38 (71)
T PF09526_consen 4 RFIAGAVCPKCQAMDTIMMWRENGVEYVECVECGY 38 (71)
T ss_pred eEecCccCCCCcCccEEEEEEeCCceEEEecCCCC
Confidence 5554 88888776665 355546788888853
No 439
>PRK07220 DNA topoisomerase I; Validated
Probab=20.35 E-value=1.1e+02 Score=32.48 Aligned_cols=50 Identities=32% Similarity=0.681 Sum_probs=29.1
Q ss_pred ccccccCc----------eeeEEcCC---CCCcceeEecCC--CceecCCccccC-------c----eecCCCCCC
Q 024534 214 GVCNICGG----------YSFVLCGE---CDGSHKVYAEKG--GGFKSCNACNEN-------G----LIRCPSCSY 263 (266)
Q Consensus 214 ~~C~~Cgg----------~rfv~C~~---C~GS~K~~~~~~--~~~~rC~~CNEn-------G----LirCp~C~~ 263 (266)
..|..||+ -+|+-|.. |.-......... .....|+.|+.+ | -+.||.|.+
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~~~~k~~~~g~~~~~~~Cp~C~~ 665 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCEGYPECTFSLPLPKSGQIIVTDKVCEAHGLNHIRIINGGKRPWDLGCPQCNF 665 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcCCCCCCCceeeCCCCCccccCCCCCCCCCCceEEEEecCCccceeeCCCCCC
Confidence 47999984 34788864 654332211100 012479999741 2 468999976
No 440
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=20.31 E-value=67 Score=25.63 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=13.8
Q ss_pred CCccEEEeCCEEEcchh
Q 024534 174 LTLPRVFIGGRYIGGVE 190 (266)
Q Consensus 174 ~tvPqVFI~G~~IGG~d 190 (266)
...=++||||.+||-+.
T Consensus 62 ~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 62 AFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCEEeeeec
Confidence 45568999999999765
No 441
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=20.26 E-value=81 Score=21.92 Aligned_cols=30 Identities=20% Similarity=0.494 Sum_probs=17.3
Q ss_pred EEcCCCCCcceeEe----cCCC-ceecCCccccCc
Q 024534 225 VLCGECDGSHKVYA----EKGG-GFKSCNACNENG 254 (266)
Q Consensus 225 v~C~~C~GS~K~~~----~~~~-~~~rC~~CNEnG 254 (266)
.||+.|+|--+.+. .+++ +...|..|.--|
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~ 36 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASG 36 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCc
Confidence 47999988666343 1221 233787776554
No 442
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.26 E-value=74 Score=29.85 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=16.2
Q ss_pred ceeeEEcCCCCCcceeEecCCCceecCCccccCc
Q 024534 221 GYSFVLCGECDGSHKVYAEKGGGFKSCNACNENG 254 (266)
Q Consensus 221 g~rfv~C~~C~GS~K~~~~~~~~~~rC~~CNEnG 254 (266)
+...|.|..|+-.=-+.....--.++|..|||--
T Consensus 62 ~~p~v~CrVCq~~I~i~gk~~QhVVkC~~CnEAT 95 (256)
T PF09788_consen 62 GAPVVTCRVCQSLIDIEGKMHQHVVKCSVCNEAT 95 (256)
T ss_pred CCceEEeecCCceecccCccceeeEECCCCCccc
Confidence 4556666666433222111111356777777653
No 443
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=20.25 E-value=88 Score=29.31 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=39.1
Q ss_pred CcEEEEEEcCCCCCCCChHHHHHHHHHHhCCCc---------EEEEECC--CCH----HH---HHHHHHHHCCCCCCCCC
Q 024534 114 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQ---------LDERDLS--MDS----SF---LNELQGILGGGGQSKLT 175 (266)
Q Consensus 114 ~kVVIYttSLrgvR~tC~~C~~vk~iL~~~gV~---------~eErDVs--~d~----~~---r~EL~ellg~~~~~~~t 175 (266)
.-|.|||+- +|.-|-.+-+.|.++--+ +++-|-- .|. ++ +....+.++. ...-
T Consensus 43 ~VVELfTSQ------GCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~---~~vy 113 (261)
T COG5429 43 GVVELFTSQ------GCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGA---RGVY 113 (261)
T ss_pred eEEEEeecC------CcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhcc---CCCC
Confidence 457788865 999998888888876432 2222221 122 22 2222333443 4577
Q ss_pred ccEEEeCCE-EEcch
Q 024534 176 LPRVFIGGR-YIGGV 189 (266)
Q Consensus 176 vPqVFI~G~-~IGG~ 189 (266)
-||+||+|+ ++-|+
T Consensus 114 TPQavvnGr~~~~Ga 128 (261)
T COG5429 114 TPQAVVNGRVHANGA 128 (261)
T ss_pred CchheeechhhhcCC
Confidence 899999996 33444
No 444
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=20.09 E-value=1e+02 Score=20.44 Aligned_cols=27 Identities=19% Similarity=0.530 Sum_probs=17.2
Q ss_pred EcCCCCCcceeEecC--------CCceecCCcccc
Q 024534 226 LCGECDGSHKVYAEK--------GGGFKSCNACNE 252 (266)
Q Consensus 226 ~C~~C~GS~K~~~~~--------~~~~~rC~~CNE 252 (266)
.|+.|+...-++... ...|-.|.+|+.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~ 36 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGH 36 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCC
Confidence 588997655554321 125889999874
No 445
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.01 E-value=67 Score=25.81 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=5.4
Q ss_pred eeEEcCCCC
Q 024534 223 SFVLCGECD 231 (266)
Q Consensus 223 rfv~C~~C~ 231 (266)
.++.|+.|+
T Consensus 20 t~f~CP~Cg 28 (99)
T PRK14892 20 KIFECPRCG 28 (99)
T ss_pred cEeECCCCC
Confidence 345566666
Done!