BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024535
         (266 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 137 GNTQTQLGPDGLGLGFGTITVIDDILTASPELRSQALGKAQGVYVASSADGSTQMMAFTA 196
           G + T+L P      FG I V DD +T S  L S+ +G+AQG Y+  + +  T  ++FT 
Sbjct: 61  GVSLTKLAPQS---HFGNIIVFDDPITLSHSLSSKQVGRAQGFYIYDTKNTYTSWLSFTF 117

Query: 197 MIEEGEYGDSLNFYGVYKIGSTMSHLSVTGGTGKFKHACGLAEV 240
           ++    +  ++ F G   I +    +SVTGGTG F    G+A +
Sbjct: 118 VLNSTHHQGTITFAGADPIVAKTRDISVTGGTGDFFMHRGIATI 161


>sp|Q9RUL7|PDXS_DEIRA Pyridoxal biosynthesis lyase PdxS OS=Deinococcus radiodurans
           (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
           NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=pdxS PE=3
           SV=1
          Length = 307

 Score = 33.1 bits (74), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 21/106 (19%)

Query: 79  RPITGLLGNIYSGQVPFARPIGFL--------PPQDGVAIPNANGAIPIVNAGTTFAGEG 130
           R    +LG+I + Q   +RP   L         P D V   +A+G +P+VN    FA  G
Sbjct: 175 RHARAVLGDIRAVQ---SRPAEELMTVARDLQAPYDLVQYVHAHGQLPVVN----FAAGG 227

Query: 131 NQQNLNGNTQTQLGPDGLGLGFGTITVIDDILTASPELRSQALGKA 176
                +     QLG DG+ +G G         +A+PE R+QA+ +A
Sbjct: 228 VATPADAALMMQLGLDGVFVGSGIFK------SANPERRAQAIVRA 267


>sp|Q9ZWA8|FLA9_ARATH Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana
           GN=FLA9 PE=1 SV=1
          Length = 247

 Score = 31.6 bits (70), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 124 TTFAGEGNQ-QNLNGNTQTQLGPDG-LGLGFGTIT----VIDDILTASPELRSQALGKAQ 177
           T FA   N  QNL   T  QL PD  + L    ++     +DD+L+ S  +R+QA G+  
Sbjct: 78  TVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDN 137

Query: 178 GVYVASSADGSTQMMAFTAMIE 199
           GVY  +    + Q+   T  +E
Sbjct: 138 GVYGLNFTGQTNQINVSTGYVE 159


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,548,522
Number of Sequences: 539616
Number of extensions: 4624018
Number of successful extensions: 9354
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9353
Number of HSP's gapped (non-prelim): 13
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)