Query 024535
Match_columns 266
No_of_seqs 178 out of 504
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 9.2E-08 3.1E-12 83.2 11.7 101 150-265 43-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.4 4.1E-06 1.4E-10 73.2 12.6 89 150-244 51-143 (195)
3 2ooj_A Hypothetical protein; s 38.6 1.6E+02 0.0055 24.0 10.5 72 170-243 41-121 (141)
4 2q03_A Uncharacterized protein 27.1 2.5E+02 0.0087 22.8 9.6 72 170-243 45-124 (138)
5 4hpq_A ATG31, KLTH0C07942P; au 18.9 45 0.0015 24.8 1.4 13 92-104 11-24 (69)
6 1wil_A KIAA1045 protein; ring 18.8 28 0.00095 27.1 0.3 23 4-26 35-57 (89)
7 3h6j_A Neuraminidase, sialidas 13.6 1.3E+02 0.0045 27.8 3.4 61 180-242 365-436 (438)
8 2dzr_A General transcription f 10.9 1.2E+02 0.004 24.0 1.9 21 74-99 39-59 (99)
9 2krs_A Probable enterotoxin; a 8.0 2.4E+02 0.0082 19.7 2.5 16 161-176 12-27 (74)
10 1yr1_A Divib, FTSQ, cell-divis 7.5 1.4E+02 0.0047 23.1 1.1 23 47-69 67-89 (119)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.73 E-value=9.2e-08 Score=83.22 Aligned_cols=101 Identities=24% Similarity=0.349 Sum_probs=81.3
Q ss_pred CCceeEEEEccccccCCCCCCcceeeeEEEEEEeCC----CCceeeeEEEEEEecCccCCeEEEeeeccCCCcceeeEEE
Q 024535 150 LGFGTITVIDDILTASPELRSQALGKAQGVYVASSA----DGSTQMMAFTAMIEEGEYGDSLNFYGVYKIGSTMSHLSVT 225 (266)
Q Consensus 150 ~~FGtv~ViDD~LTeGpe~~SklVGRAQG~yv~ss~----dg~s~~ma~t~vF~~g~y~GSLs~~G~~~~~~~~rElaVV 225 (266)
..-|..+.|+++|.++.. -+.||.-+|+++.... .+..+...+++.|-+. |.|+++|..-.. ....++|.
T Consensus 43 ~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---GhISvQGpy~t~-~Dt~LAIT 116 (188)
T 2brj_A 43 FGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---GHLSVQGPYLTY-EDSFLAIT 116 (188)
T ss_dssp SCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---EEEEEEEEEETT-BCEEEEEE
T ss_pred cCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---ceEEEecccccc-ccceeeEe
Confidence 458999999999997754 4889999999999873 3455667777778652 799999996433 34689999
Q ss_pred eccCcccceeeEEEEeeecCCCccccCCCceEEEEEEEEE
Q 024535 226 GGTGKFKHACGLAEVRPLIPAGQHVTDGAESLLRITANLK 265 (266)
Q Consensus 226 GGTG~Fr~ArGyA~~kt~~~~gq~~t~g~~~vle~~V~L~ 265 (266)
||||.|+.|+|.+.++.+.+ -.-+++++||+
T Consensus 117 GGTGif~gA~G~Vkl~~i~~---------P~k~~yTf~L~ 147 (188)
T 2brj_A 117 GGAGIFEGAYGQVKLQQLVY---------PTKLFYTFYLK 147 (188)
T ss_dssp EEEETTTTCEEEEEEEEEET---------TTEEEEEEEEE
T ss_pred cCcceEcceEEEEEEEeecc---------CceEEEEEEEe
Confidence 99999999999999999853 13588999986
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.38 E-value=4.1e-06 Score=73.23 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=73.5
Q ss_pred CCceeEEEEccccccCCCCCCcceeeeEEEEEEeC----CCCceeeeEEEEEEecCccCCeEEEeeeccCCCcceeeEEE
Q 024535 150 LGFGTITVIDDILTASPELRSQALGKAQGVYVASS----ADGSTQMMAFTAMIEEGEYGDSLNFYGVYKIGSTMSHLSVT 225 (266)
Q Consensus 150 ~~FGtv~ViDD~LTeGpe~~SklVGRAQG~yv~ss----~dg~s~~ma~t~vF~~g~y~GSLs~~G~~~~~~~~rElaVV 225 (266)
...|.++.++++|.++.. -+.||...|+++... +.|...--.+++.|.+ -|+|+++|..-.. ...-++|+
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~GhIsvqGpy~t~-eDs~lAIT 124 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YGHISVQGPYITY-EDSYLAIT 124 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GCEEEEEEEEETT-BCEEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---CceEEEecceecc-CceeEEEe
Confidence 458999999999999876 578999999998885 3344566677777765 3899999998654 34579999
Q ss_pred eccCcccceeeEEEEeeec
Q 024535 226 GGTGKFKHACGLAEVRPLI 244 (266)
Q Consensus 226 GGTG~Fr~ArGyA~~kt~~ 244 (266)
||||.|+.|+|-+++..+.
T Consensus 125 GGTGiF~Ga~GqVkl~qiv 143 (195)
T 4h6b_A 125 GGSGIFAGCYGQAKLHQII 143 (195)
T ss_dssp EESGGGTTCEEEEEEEEEE
T ss_pred cCcceEcccEEEEEEeEee
Confidence 9999999999999999875
No 3
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=38.62 E-value=1.6e+02 Score=24.04 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=50.0
Q ss_pred CcceeeeEEEEEEeCC--CCceeeeEEEEEEecCcc---CCe--EEEeeeccCCCcceeeEEEe--ccCcccceeeEEEE
Q 024535 170 SQALGKAQGVYVASSA--DGSTQMMAFTAMIEEGEY---GDS--LNFYGVYKIGSTMSHLSVTG--GTGKFKHACGLAEV 240 (266)
Q Consensus 170 SklVGRAQG~yv~ss~--dg~s~~ma~t~vF~~g~y---~GS--Ls~~G~~~~~~~~rElaVVG--GTG~Fr~ArGyA~~ 240 (266)
-.+.|+.++-|+..-. ++...++++.-+ .|.+ +|| |+-.|..........+-||= |||++...+|-..+
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f--~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~ 118 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQV--VGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAI 118 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEE--EEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEE--EEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEE
Confidence 4578888998888776 444444433322 2333 367 66677777666678899998 99999999999999
Q ss_pred eee
Q 024535 241 RPL 243 (266)
Q Consensus 241 kt~ 243 (266)
+..
T Consensus 119 ~~~ 121 (141)
T 2ooj_A 119 SIE 121 (141)
T ss_dssp EEE
T ss_pred EEc
Confidence 765
No 4
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=27.11 E-value=2.5e+02 Score=22.79 Aligned_cols=72 Identities=21% Similarity=0.370 Sum_probs=50.1
Q ss_pred CcceeeeEEEEEEeCC-CCceeeeEEEEEEecCcc---CCe--EEEeeeccCCCcceeeEEEe--ccCcccceeeEEEEe
Q 024535 170 SQALGKAQGVYVASSA-DGSTQMMAFTAMIEEGEY---GDS--LNFYGVYKIGSTMSHLSVTG--GTGKFKHACGLAEVR 241 (266)
Q Consensus 170 SklVGRAQG~yv~ss~-dg~s~~ma~t~vF~~g~y---~GS--Ls~~G~~~~~~~~rElaVVG--GTG~Fr~ArGyA~~k 241 (266)
-.+.|++++-|+..-. ++...++++.- | .|.+ +|| |+-.|.........++-||= |||++...+|-..++
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~-f-~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~ 122 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEH-F-TGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFV 122 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEE-E-EEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEE-E-EEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 4578888888877766 45444433332 2 2334 367 66667776666668899998 999999999999997
Q ss_pred ee
Q 024535 242 PL 243 (266)
Q Consensus 242 t~ 243 (266)
..
T Consensus 123 ~~ 124 (138)
T 2q03_A 123 ST 124 (138)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 5
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=18.94 E-value=45 Score=24.79 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=10.9
Q ss_pred CcccccCCCCC-CC
Q 024535 92 QVPFARPIGFL-PP 104 (266)
Q Consensus 92 q~pfakp~g~~-p~ 104 (266)
.|||.||.||+ ||
T Consensus 11 RlPg~Rp~gFVDPP 24 (69)
T 4hpq_A 11 RVAGRARNGFVDPL 24 (69)
T ss_dssp ECSSCCCSCCCCCC
T ss_pred EecCCCCCCCCCCC
Confidence 58999999988 55
No 6
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=18.77 E-value=28 Score=27.08 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=18.7
Q ss_pred CCccchhhhhhhhhhhhHhhhhh
Q 024535 4 HPKNFHLSFLSRLGYLRYAHYMM 26 (266)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (266)
=.+.||.+-|.|.||+|---+|.
T Consensus 35 C~RvfH~~CL~r~gy~~~~~a~e 57 (89)
T 1wil_A 35 CTRVFHDGCLRRMGYIQGDSAAE 57 (89)
T ss_dssp SSSCCCHHHHHHHTSCCCCCCCS
T ss_pred ccccccHhhcccccccccHHHHH
Confidence 36899999999999998655544
No 7
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=13.64 E-value=1.3e+02 Score=27.82 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=37.4
Q ss_pred EEEeCCCCceeeeEEEEEEecCccCCe-EEE-eeeccCCCcceeeEEEeccCcc---------cceeeEEEEee
Q 024535 180 YVASSADGSTQMMAFTAMIEEGEYGDS-LNF-YGVYKIGSTMSHLSVTGGTGKF---------KHACGLAEVRP 242 (266)
Q Consensus 180 yv~ss~dg~s~~ma~t~vF~~g~y~GS-Ls~-~G~~~~~~~~rElaVVGGTG~F---------r~ArGyA~~kt 242 (266)
...-+.....|-..|--.|.+|.+||| -++ .|...+ .-..=+-|=|||.| |.|.||-.++.
T Consensus 365 efarssspstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 365 EFARSSSPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp EEESSSSCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred EeeccCCCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEEe
Confidence 444455566688888899999999976 222 222211 11112234478877 67888887775
No 8
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.87 E-value=1.2e+02 Score=24.01 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=15.6
Q ss_pred CCCcceeeeccccccccCCcccccCC
Q 024535 74 SNPTARPITGLLGNIYSGQVPFARPI 99 (266)
Q Consensus 74 snpTa~~Vtg~~~~~~~gq~pfakp~ 99 (266)
.||.++.|.|+.- .|||-+|+
T Consensus 39 ~np~av~V~GLPe-----gIpFr~P~ 59 (99)
T 2dzr_A 39 SNPGSVIIEGLPP-----GIPFRKPC 59 (99)
T ss_dssp HCSSSEEEESCCT-----TCCSSCGG
T ss_pred cCCCeEEEecCCC-----CCcccCCC
Confidence 5899999999743 46666664
No 9
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=7.97 E-value=2.4e+02 Score=19.68 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=13.4
Q ss_pred ccccCCCCCCcceeee
Q 024535 161 ILTASPELRSQALGKA 176 (266)
Q Consensus 161 ~LTeGpe~~SklVGRA 176 (266)
.|+.+|+.++++|+++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6888999999988775
No 10
>1yr1_A Divib, FTSQ, cell-division initiation protein; divisome, cell cycle; NMR {Geobacillus stearothermophilus} PDB: 2alj_A
Probab=7.47 E-value=1.4e+02 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.5
Q ss_pred hecccCCCCCCCCCCeEEEEEee
Q 024535 47 FVAAVDPAPAAGEHPILEFYMHD 69 (266)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~FymHD 69 (266)
.++.+.+.+.......|.+||+|
T Consensus 67 ~IseI~~~p~~~~~~~i~L~M~D 89 (119)
T 1yr1_A 67 AMSEIHYKPTREYEDRVIVYMND 89 (119)
T ss_dssp SCSEEEECCCSSCTTEEEEECTT
T ss_pred cccEEEcCCCCCCCCeEEEEEcC
Confidence 45667777655566799999999
Done!