BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024536
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095 OS=Dictyostelium
discoideum GN=DDB_G0285095 PE=4 SV=1
Length = 263
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 145 EMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK 204
E ++ P+D+ +LA Y L + G +AEE +A+ + YG+ + +
Sbjct: 78 EGLQEQPQDSDLLAQYGVLL-SMEGKNKEAEESLRKAVEVDTDNSRAWQAYGEFLERTNN 136
Query: 205 DAPRAKSYFDRAVHSAP------DDCHVLASYARFLWDAGE 239
+ Y + H+AP DD +L SYA F+ +GE
Sbjct: 137 PKKAKEVYGEAYKHAAPKIALDEDDSSLLLSYAIFIQKSGE 177
>sp|A7SVT1|FICD_NEMVE Adenosine monophosphate-protein transferase FICD homolog
OS=Nematostella vectensis GN=v1g194069 PE=3 SV=1
Length = 427
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192
GK S+++ ++ Q+ + P +L Y +FL++ D V+AE RA+ A P D L
Sbjct: 91 GKHSKAVKLF-QQAVSLAPHHPEILLQYGEFLEQ--HDVVQAEHLYNRALTANPLDSRAL 147
Query: 193 S 193
+
Sbjct: 148 A 148
>sp|A1TYR4|HLDE_MARAV Bifunctional protein HldE OS=Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8) GN=hldE PE=3 SV=1
Length = 481
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM 194
++ES+ Y E+I+ Y + +++++YAK GD ++A G+ +L P + S+
Sbjct: 131 QAESVKQRYAELIEQY--NTVIISDYAKGTLACVGDLIQAARKAGKQVLVDPKSKD-FSL 187
Query: 195 YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG 238
Y I S F A A D +L+S L DAG
Sbjct: 188 YRGATVITPN-----LSEFKAAGGDASSDDAMLSSARAMLTDAG 226
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197
S + ++ ++ P +A V NYA FLK+ +G +A + A+ P + L+ G
Sbjct: 467 SRESLFRSGVQTLPHNAKVHYNYANFLKD-QGRNKEAIYHYRTALKLYPRHASALNNLGT 525
Query: 198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
L +D AK Y+ RA+ P L + L ++E+
Sbjct: 526 LT----RDTAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKKEE 566
>sp|Q7K4B6|TMTC3_DROME Transmembrane and TPR repeat-containing protein CG4050
OS=Drosophila melanogaster GN=CG4050 PE=2 SV=1
Length = 926
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVL 192
+S+ VY+ + I+ YPE L N A L+E+ G+ + R+ L K D
Sbjct: 680 KSQQAQVYFNKAIELYPEHEQALLNSAILLQELGGEEARR---VSRSRLYKVLENDDQNE 736
Query: 193 SMYGDL--IWINHKDAPRAKSYFDRAVHSAPD 222
+Y +L + ++ A+ +F RA+H D
Sbjct: 737 KVYFNLGMLAMDESSFDEAEQFFKRAIHLKAD 768
>sp|C4LA04|HCP_TOLAT Hydroxylamine reductase OS=Tolumonas auensis (strain DSM 9187 /
TA4) GN=hcp PE=3 SV=1
Length = 553
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 123 FLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVL 157
FL GG DGD + YY EM KA P+D+L+L
Sbjct: 403 FLIGGCDGDKQERG-----YYTEMAKAVPQDSLIL 432
>sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=dcl1 PE=3 SV=3
Length = 1537
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 39 SSSSIKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNE 98
S+ + R P LSDG+L H+ K + L N L PR+ +E E ++ T +
Sbjct: 92 SNEAFDRAPIALSDGELSIAHLVKKQDLGNGMLDPREYQIELFERAKTQNTIAVLDTGSG 151
Query: 99 TTPRLSGGLLLDHGCGGGA--RGNG 121
T L LLL H R NG
Sbjct: 152 KT--LIAVLLLRHTILNELDDRANG 174
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 19/156 (12%)
Query: 101 PRLSGGLLLDHG----CGGGARGNGGFLGGGG-------DGDSGKESE---SMDVYYQEM 146
P + +L HG C G +R L + K++E S + ++
Sbjct: 476 PSMGYCILFVHGLSKLCAGLSRCGATSLMASTVLLLLLFSWKTVKQNEIWLSRESLFRSG 535
Query: 147 IKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA 206
++ P +A V NYA FLK+ +G +A + A+ P + L+ G L KD
Sbjct: 536 VQTLPHNAKVHYNYANFLKD-QGRNKEAIYHYRTALKLYPRHASALNNLGTLT----KDM 590
Query: 207 PRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
AK Y+ +A+ P L + L + E+
Sbjct: 591 AEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKTEE 626
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,533,204
Number of Sequences: 539616
Number of extensions: 5803210
Number of successful extensions: 30849
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 24788
Number of HSP's gapped (non-prelim): 4102
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)