Query 024536
Match_columns 266
No_of_seqs 219 out of 1122
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.6 7E-15 1.5E-19 122.1 13.4 101 134-236 38-138 (144)
2 PRK10370 formate-dependent nit 99.6 5.6E-15 1.2E-19 129.2 13.2 123 133-256 52-176 (198)
3 PRK15359 type III secretion sy 99.6 1.2E-14 2.7E-19 120.6 10.4 104 139-247 12-115 (144)
4 KOG4626 O-linked N-acetylgluco 99.6 2E-14 4.4E-19 142.1 11.9 111 134-246 300-410 (966)
5 KOG4626 O-linked N-acetylgluco 99.5 3.7E-15 8.1E-20 147.3 4.3 112 135-248 267-378 (966)
6 PRK12370 invasion protein regu 99.5 9.1E-14 2E-18 138.1 12.6 112 134-247 318-429 (553)
7 PRK12370 invasion protein regu 99.5 9.9E-14 2.1E-18 137.9 11.5 124 132-256 273-404 (553)
8 TIGR02552 LcrH_SycD type III s 99.5 2.2E-13 4.8E-18 109.2 10.0 105 141-247 4-108 (135)
9 TIGR00990 3a0801s09 mitochondr 99.5 4.3E-13 9.3E-18 134.4 13.3 111 134-246 345-455 (615)
10 COG3063 PilF Tfp pilus assembl 99.5 4.4E-13 9.6E-18 119.6 10.9 109 134-245 49-160 (250)
11 TIGR00990 3a0801s09 mitochondr 99.5 6.9E-13 1.5E-17 132.8 13.7 112 134-247 379-490 (615)
12 KOG0553 TPR repeat-containing 99.5 6.2E-13 1.3E-17 122.3 11.9 108 134-243 95-202 (304)
13 PRK11189 lipoprotein NlpI; Pro 99.5 1.4E-12 3E-17 120.1 14.2 110 134-246 78-187 (296)
14 PLN03088 SGT1, suppressor of 99.4 2E-12 4.4E-17 122.4 15.1 103 134-238 16-118 (356)
15 PRK09782 bacteriophage N4 rece 99.4 1.1E-12 2.4E-17 138.4 13.8 113 134-249 590-702 (987)
16 COG3063 PilF Tfp pilus assembl 99.4 1.2E-12 2.6E-17 116.9 11.5 111 134-246 83-195 (250)
17 KOG1126 DNA-binding cell divis 99.4 1.3E-13 2.9E-18 136.7 4.7 124 134-259 435-558 (638)
18 TIGR02521 type_IV_pilW type IV 99.4 6.3E-12 1.4E-16 105.6 13.0 111 134-246 79-191 (234)
19 PRK15174 Vi polysaccharide exp 99.4 3.4E-12 7.4E-17 129.6 13.1 112 134-247 226-341 (656)
20 TIGR02521 type_IV_pilW type IV 99.4 1.3E-11 2.8E-16 103.7 13.9 111 134-246 45-157 (234)
21 PRK15179 Vi polysaccharide bio 99.4 5.2E-12 1.1E-16 129.1 13.7 110 134-245 100-209 (694)
22 PRK11189 lipoprotein NlpI; Pro 99.4 4.8E-12 1E-16 116.5 12.2 112 134-247 40-155 (296)
23 TIGR02552 LcrH_SycD type III s 99.4 1.4E-11 2.9E-16 98.8 13.2 92 134-227 31-122 (135)
24 PF13429 TPR_15: Tetratricopep 99.4 1.6E-12 3.5E-17 117.5 8.7 112 134-247 160-271 (280)
25 PRK10370 formate-dependent nit 99.3 1.4E-11 3.1E-16 107.7 12.6 91 134-225 87-179 (198)
26 KOG1126 DNA-binding cell divis 99.3 1.1E-12 2.4E-17 130.3 6.2 119 134-254 469-587 (638)
27 TIGR02917 PEP_TPR_lipo putativ 99.3 2.6E-11 5.5E-16 120.9 13.9 110 134-246 784-893 (899)
28 COG5010 TadD Flp pilus assembl 99.3 2.6E-11 5.7E-16 109.6 12.6 113 134-248 114-226 (257)
29 KOG1155 Anaphase-promoting com 99.3 1.5E-11 3.1E-16 118.8 11.1 110 134-245 344-453 (559)
30 PRK09782 bacteriophage N4 rece 99.3 1.8E-11 4E-16 129.2 12.7 110 134-245 623-732 (987)
31 PRK15363 pathogenicity island 99.3 5.8E-11 1.3E-15 100.8 13.2 86 134-221 49-134 (157)
32 PRK11447 cellulose synthase su 99.3 2.6E-11 5.7E-16 129.9 14.0 114 134-248 365-519 (1157)
33 PRK15174 Vi polysaccharide exp 99.3 3.4E-11 7.3E-16 122.3 13.8 107 138-246 268-374 (656)
34 PF13414 TPR_11: TPR repeat; P 99.3 1.7E-11 3.8E-16 88.0 8.5 68 152-221 1-69 (69)
35 PRK11906 transcriptional regul 99.3 2.9E-11 6.4E-16 117.2 10.8 125 131-256 269-404 (458)
36 PRK11447 cellulose synthase su 99.2 5.3E-11 1.1E-15 127.6 13.1 114 134-249 283-410 (1157)
37 PRK15363 pathogenicity island 99.2 5.5E-11 1.2E-15 100.9 10.1 99 145-245 25-124 (157)
38 TIGR02917 PEP_TPR_lipo putativ 99.2 1.8E-10 3.8E-15 114.9 13.4 114 134-250 750-863 (899)
39 TIGR02795 tol_pal_ybgF tol-pal 99.2 6.4E-10 1.4E-14 86.0 13.0 93 134-228 16-114 (119)
40 PRK10049 pgaA outer membrane p 99.2 4.2E-10 9.1E-15 116.1 14.8 110 134-246 63-172 (765)
41 cd00189 TPR Tetratricopeptide 99.2 3.8E-10 8.1E-15 80.0 10.2 86 134-221 14-99 (100)
42 PF13432 TPR_16: Tetratricopep 99.1 1.6E-10 3.6E-15 82.2 7.5 64 159-224 2-65 (65)
43 TIGR03302 OM_YfiO outer membra 99.1 5.8E-10 1.3E-14 97.7 12.4 113 134-247 47-189 (235)
44 PRK11788 tetratricopeptide rep 99.1 4.8E-10 1E-14 104.5 12.5 113 134-249 194-307 (389)
45 TIGR03302 OM_YfiO outer membra 99.1 5.5E-10 1.2E-14 97.9 11.1 114 134-248 84-227 (235)
46 PRK11788 tetratricopeptide rep 99.1 4.6E-10 1E-14 104.6 11.2 110 134-245 121-235 (389)
47 COG4235 Cytochrome c biogenesi 99.1 9.2E-10 2E-14 101.4 12.6 122 134-256 136-259 (287)
48 KOG1125 TPR repeat-containing 99.1 1.4E-10 3E-15 114.2 7.5 111 134-246 408-520 (579)
49 KOG1155 Anaphase-promoting com 99.1 6E-10 1.3E-14 107.8 11.3 110 134-245 378-487 (559)
50 PRK10049 pgaA outer membrane p 99.1 1E-09 2.2E-14 113.3 13.6 116 134-252 29-144 (765)
51 PLN02789 farnesyltranstransfer 99.1 9.7E-10 2.1E-14 103.1 12.2 108 135-244 52-162 (320)
52 cd00189 TPR Tetratricopeptide 99.1 6.2E-10 1.3E-14 78.8 8.1 90 156-247 2-91 (100)
53 CHL00033 ycf3 photosystem I as 99.1 3.8E-09 8.2E-14 88.9 14.1 90 134-224 49-154 (168)
54 KOG0547 Translocase of outer m 99.1 2.6E-10 5.6E-15 110.8 7.4 114 134-248 408-561 (606)
55 PF13429 TPR_15: Tetratricopep 99.1 2.5E-10 5.4E-15 103.2 6.6 113 134-248 124-238 (280)
56 PRK10153 DNA-binding transcrip 99.1 1E-09 2.3E-14 108.9 11.4 125 129-255 351-484 (517)
57 KOG0547 Translocase of outer m 99.1 4.5E-10 9.7E-15 109.2 8.3 113 134-248 374-486 (606)
58 PRK02603 photosystem I assembl 99.0 5.2E-09 1.1E-13 88.6 13.7 88 134-223 49-153 (172)
59 PRK15179 Vi polysaccharide bio 99.0 1.5E-09 3.3E-14 111.1 12.1 113 134-248 66-178 (694)
60 PLN03088 SGT1, suppressor of 99.0 1.2E-09 2.6E-14 103.5 10.2 85 160-246 8-92 (356)
61 COG5010 TadD Flp pilus assembl 99.0 2.5E-09 5.4E-14 96.9 10.7 109 135-245 81-189 (257)
62 TIGR02795 tol_pal_ybgF tol-pal 99.0 3.1E-09 6.8E-14 82.1 9.7 100 154-255 2-107 (119)
63 CHL00033 ycf3 photosystem I as 99.0 3.8E-09 8.2E-14 88.9 10.9 108 135-244 14-133 (168)
64 KOG1125 TPR repeat-containing 99.0 1.5E-09 3.3E-14 106.9 8.6 111 134-246 444-564 (579)
65 COG4783 Putative Zn-dependent 99.0 9.3E-09 2E-13 99.9 13.2 109 134-244 320-428 (484)
66 PLN02789 farnesyltranstransfer 99.0 1.3E-08 2.7E-13 95.6 13.7 102 134-237 86-189 (320)
67 PF06552 TOM20_plant: Plant sp 99.0 8.6E-09 1.9E-13 89.3 11.5 97 136-232 7-122 (186)
68 PF12895 Apc3: Anaphase-promot 98.9 3.4E-09 7.3E-14 79.5 7.0 80 134-216 3-84 (84)
69 PRK02603 photosystem I assembl 98.9 2.5E-08 5.5E-13 84.4 12.7 99 142-242 21-124 (172)
70 cd05804 StaR_like StaR_like; a 98.9 9.4E-09 2E-13 94.8 10.7 115 134-250 57-212 (355)
71 cd05804 StaR_like StaR_like; a 98.9 9.8E-09 2.1E-13 94.7 10.5 87 134-222 128-218 (355)
72 KOG1173 Anaphase-promoting com 98.9 6.1E-09 1.3E-13 102.6 9.2 111 134-246 394-511 (611)
73 PRK11906 transcriptional regul 98.9 2.6E-08 5.6E-13 96.9 12.9 110 134-245 318-428 (458)
74 PF14559 TPR_19: Tetratricopep 98.9 6.4E-09 1.4E-13 74.2 6.6 65 167-232 3-67 (68)
75 PRK14574 hmsH outer membrane p 98.9 1.8E-08 4E-13 104.9 12.5 114 134-249 48-161 (822)
76 KOG2076 RNA polymerase III tra 98.9 2E-08 4.3E-13 103.1 12.4 114 134-249 153-266 (895)
77 PRK10803 tol-pal system protei 98.9 6.9E-08 1.5E-12 88.3 14.7 92 134-227 157-254 (263)
78 TIGR00540 hemY_coli hemY prote 98.8 2.2E-08 4.8E-13 96.0 11.3 108 134-246 277-392 (409)
79 PF13432 TPR_16: Tetratricopep 98.8 6.8E-09 1.5E-13 73.8 5.7 55 134-189 11-65 (65)
80 KOG0548 Molecular co-chaperone 98.8 2.1E-08 4.5E-13 98.3 10.9 108 134-243 372-479 (539)
81 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.7E-08 3.8E-13 98.0 10.1 70 149-220 70-142 (453)
82 PF13371 TPR_9: Tetratricopept 98.8 2.9E-08 6.2E-13 71.8 8.8 64 167-231 7-70 (73)
83 COG4235 Cytochrome c biogenesi 98.8 1.1E-07 2.4E-12 87.8 13.2 93 134-227 170-264 (287)
84 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 9.6E-08 2.1E-12 92.1 13.4 106 134-244 183-288 (395)
85 PF13414 TPR_11: TPR repeat; P 98.8 1.9E-08 4E-13 72.1 6.0 52 134-186 17-69 (69)
86 PF12895 Apc3: Anaphase-promot 98.8 6.9E-09 1.5E-13 77.7 3.9 77 168-246 2-80 (84)
87 KOG0553 TPR repeat-containing 98.7 3.2E-08 7E-13 91.4 8.7 79 167-246 93-171 (304)
88 PF14559 TPR_19: Tetratricopep 98.7 2.8E-08 6E-13 70.9 6.4 63 134-197 5-67 (68)
89 TIGR00540 hemY_coli hemY prote 98.7 1.4E-07 3.1E-12 90.4 13.4 111 134-246 98-209 (409)
90 PF09976 TPR_21: Tetratricopep 98.7 3.4E-07 7.4E-12 75.4 12.6 110 134-246 25-140 (145)
91 PRK10747 putative protoheme IX 98.7 2.6E-07 5.5E-12 88.5 12.3 107 134-246 277-383 (398)
92 KOG0543 FKBP-type peptidyl-pro 98.7 2.1E-07 4.5E-12 89.0 11.4 109 134-244 222-345 (397)
93 PF12688 TPR_5: Tetratrico pep 98.7 2.8E-07 6.1E-12 75.0 10.6 87 156-244 3-95 (120)
94 KOG4162 Predicted calmodulin-b 98.6 2.9E-07 6.3E-12 93.5 12.4 126 135-262 665-798 (799)
95 PRK15331 chaperone protein Sic 98.6 3.9E-07 8.4E-12 78.0 11.2 92 134-228 51-142 (165)
96 KOG1129 TPR repeat-containing 98.6 1.5E-07 3.2E-12 88.5 9.2 123 134-258 338-467 (478)
97 PF13371 TPR_9: Tetratricopept 98.6 2.7E-07 5.9E-12 66.6 8.3 62 134-196 9-70 (73)
98 PRK14574 hmsH outer membrane p 98.6 4.3E-07 9.3E-12 94.8 12.8 111 134-247 116-226 (822)
99 KOG2003 TPR repeat-containing 98.6 2.7E-07 5.9E-12 89.7 10.5 123 134-258 504-626 (840)
100 KOG0548 Molecular co-chaperone 98.6 3E-07 6.4E-12 90.4 10.7 100 133-234 15-114 (539)
101 PRK10803 tol-pal system protei 98.6 4.2E-07 9.1E-12 83.2 10.6 94 153-247 141-240 (263)
102 KOG1128 Uncharacterized conser 98.5 1.6E-07 3.4E-12 95.1 7.5 111 133-245 498-608 (777)
103 PRK10153 DNA-binding transcrip 98.5 7.2E-07 1.6E-11 88.8 11.8 88 135-225 399-488 (517)
104 PRK10747 putative protoheme IX 98.5 1.3E-06 2.9E-11 83.6 13.2 110 134-245 98-208 (398)
105 KOG2002 TPR-containing nuclear 98.5 9.4E-08 2E-12 98.9 5.5 123 132-256 624-748 (1018)
106 PF13424 TPR_12: Tetratricopep 98.5 1.5E-07 3.2E-12 69.1 4.8 67 151-219 2-75 (78)
107 KOG1156 N-terminal acetyltrans 98.5 4.3E-07 9.4E-12 90.9 9.1 109 134-244 55-163 (700)
108 PRK14720 transcript cleavage f 98.5 6.4E-07 1.4E-11 93.8 10.5 107 134-245 45-170 (906)
109 KOG4162 Predicted calmodulin-b 98.5 8E-07 1.7E-11 90.4 10.2 90 134-225 698-789 (799)
110 KOG3060 Uncharacterized conser 98.5 2.6E-06 5.6E-11 77.6 12.1 104 134-239 100-203 (289)
111 PRK15331 chaperone protein Sic 98.4 6.2E-07 1.3E-11 76.8 7.5 94 150-245 33-126 (165)
112 KOG1840 Kinesin light chain [C 98.4 7.4E-07 1.6E-11 88.4 9.2 110 134-245 255-388 (508)
113 KOG1173 Anaphase-promoting com 98.4 6.5E-07 1.4E-11 88.5 8.5 111 134-246 326-436 (611)
114 PF12688 TPR_5: Tetratrico pep 98.4 5.2E-06 1.1E-10 67.6 11.9 87 131-219 12-104 (120)
115 KOG3060 Uncharacterized conser 98.4 5.7E-06 1.2E-10 75.4 12.5 96 134-230 134-231 (289)
116 KOG2002 TPR-containing nuclear 98.4 1.2E-06 2.5E-11 91.0 8.7 115 134-248 213-366 (1018)
117 KOG1174 Anaphase-promoting com 98.4 5E-06 1.1E-10 80.2 12.3 109 134-246 418-526 (564)
118 KOG1128 Uncharacterized conser 98.3 1.2E-06 2.7E-11 88.7 8.1 109 134-244 438-573 (777)
119 KOG0550 Molecular chaperone (D 98.3 1.1E-06 2.3E-11 84.6 6.9 111 134-246 217-343 (486)
120 KOG1127 TPR repeat-containing 98.3 2.6E-06 5.7E-11 88.7 10.2 124 132-256 470-628 (1238)
121 PF09976 TPR_21: Tetratricopep 98.3 4.2E-06 9.2E-11 68.9 9.6 81 134-217 62-145 (145)
122 KOG1129 TPR repeat-containing 98.3 4.6E-07 9.9E-12 85.3 3.9 109 134-244 304-415 (478)
123 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.2E-06 2.7E-11 85.2 7.0 62 184-246 70-134 (453)
124 KOG1840 Kinesin light chain [C 98.3 3.1E-06 6.7E-11 84.1 9.5 110 134-245 213-346 (508)
125 KOG4648 Uncharacterized conser 98.3 2.7E-06 5.9E-11 80.6 8.1 98 134-233 111-208 (536)
126 KOG2003 TPR repeat-containing 98.3 3.6E-06 7.8E-11 82.1 8.9 123 134-258 538-694 (840)
127 PRK14720 transcript cleavage f 98.3 1.1E-05 2.5E-10 84.6 13.1 101 134-236 130-269 (906)
128 PF13428 TPR_14: Tetratricopep 98.2 2.6E-06 5.7E-11 56.7 5.3 41 190-231 2-42 (44)
129 COG4783 Putative Zn-dependent 98.2 2.2E-05 4.9E-10 76.7 13.5 91 134-226 354-444 (484)
130 PF13431 TPR_17: Tetratricopep 98.2 1.3E-06 2.8E-11 55.6 3.3 30 179-209 3-32 (34)
131 PRK10866 outer membrane biogen 98.2 2.2E-05 4.8E-10 70.9 12.2 111 134-245 46-196 (243)
132 KOG1156 N-terminal acetyltrans 98.2 6.3E-06 1.4E-10 82.8 9.3 110 134-245 21-130 (700)
133 PF13431 TPR_17: Tetratricopep 98.2 1.5E-06 3.3E-11 55.3 3.3 34 212-245 1-34 (34)
134 KOG4234 TPR repeat-containing 98.2 2.3E-05 4.9E-10 69.7 11.1 102 134-237 109-215 (271)
135 COG2956 Predicted N-acetylgluc 98.1 2.2E-05 4.7E-10 73.9 11.0 109 134-244 155-269 (389)
136 KOG4642 Chaperone-dependent E3 98.1 1E-05 2.2E-10 73.2 8.6 87 131-219 21-107 (284)
137 PF13428 TPR_14: Tetratricopep 98.1 6.8E-06 1.5E-10 54.7 5.3 43 154-197 1-43 (44)
138 PF05843 Suf: Suppressor of fo 98.1 7.8E-06 1.7E-10 75.1 7.4 119 136-255 17-138 (280)
139 KOG1127 TPR repeat-containing 98.1 1.6E-05 3.5E-10 83.0 9.4 91 134-224 16-108 (1238)
140 KOG0624 dsRNA-activated protei 98.1 1.7E-05 3.7E-10 75.3 8.7 89 134-224 52-140 (504)
141 PF13525 YfiO: Outer membrane 98.1 3.7E-05 7.9E-10 67.2 10.3 110 134-244 19-161 (203)
142 KOG1174 Anaphase-promoting com 98.0 1.9E-05 4.2E-10 76.3 9.0 110 134-244 246-388 (564)
143 PF04733 Coatomer_E: Coatomer 98.0 1.8E-05 3.8E-10 73.4 8.6 110 134-244 145-255 (290)
144 COG1729 Uncharacterized protei 98.0 7.3E-05 1.6E-09 68.5 12.2 92 134-227 155-252 (262)
145 KOG4555 TPR repeat-containing 98.0 6.5E-05 1.4E-09 62.9 10.7 90 134-225 57-150 (175)
146 KOG0624 dsRNA-activated protei 98.0 7.2E-06 1.6E-10 77.7 5.8 94 150-245 34-127 (504)
147 KOG0550 Molecular chaperone (D 98.0 1.2E-05 2.6E-10 77.5 7.2 110 134-245 183-308 (486)
148 KOG0495 HAT repeat protein [RN 98.0 3.5E-05 7.5E-10 77.9 10.7 109 134-244 665-773 (913)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 4.7E-05 1E-09 73.6 11.0 88 134-223 214-301 (395)
150 KOG0543 FKBP-type peptidyl-pro 98.0 4.3E-05 9.4E-10 73.3 10.2 88 134-222 271-358 (397)
151 COG4700 Uncharacterized protei 98.0 9E-05 2E-09 65.3 11.1 109 134-245 103-214 (251)
152 PF13512 TPR_18: Tetratricopep 98.0 0.00014 3E-09 61.0 11.6 92 134-227 24-136 (142)
153 KOG2076 RNA polymerase III tra 98.0 3.7E-05 8.1E-10 79.5 9.8 97 158-256 143-239 (895)
154 PF12569 NARP1: NMDA receptor- 97.9 5.8E-05 1.3E-09 75.3 10.5 86 158-245 198-283 (517)
155 COG4785 NlpI Lipoprotein NlpI, 97.9 2.4E-05 5.1E-10 70.4 6.8 93 131-225 76-168 (297)
156 PF07719 TPR_2: Tetratricopept 97.9 3.1E-05 6.7E-10 47.7 5.2 34 189-223 1-34 (34)
157 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0005 1.1E-08 54.2 12.8 109 134-244 144-256 (291)
158 PF00515 TPR_1: Tetratricopept 97.8 3.2E-05 6.9E-10 48.1 4.5 32 190-222 2-33 (34)
159 KOG4555 TPR repeat-containing 97.8 7.5E-05 1.6E-09 62.5 7.6 88 161-250 50-141 (175)
160 COG3071 HemY Uncharacterized e 97.8 0.00016 3.5E-09 69.2 10.5 108 134-247 277-384 (400)
161 PLN03077 Protein ECB2; Provisi 97.8 0.00012 2.6E-09 76.4 10.3 110 134-247 603-714 (857)
162 KOG3824 Huntingtin interacting 97.8 8E-05 1.7E-09 70.0 7.9 65 167-232 128-192 (472)
163 PF04733 Coatomer_E: Coatomer 97.8 6.8E-05 1.5E-09 69.5 7.5 92 134-227 181-273 (290)
164 COG2956 Predicted N-acetylgluc 97.8 0.00024 5.3E-09 66.9 11.0 108 134-244 194-302 (389)
165 KOG4642 Chaperone-dependent E3 97.8 4.4E-05 9.6E-10 69.2 5.5 94 168-262 23-119 (284)
166 PRK10866 outer membrane biogen 97.7 0.00033 7.2E-09 63.2 11.2 83 153-237 31-119 (243)
167 KOG0495 HAT repeat protein [RN 97.7 0.00021 4.5E-09 72.5 10.3 108 134-244 564-671 (913)
168 PF12569 NARP1: NMDA receptor- 97.7 0.00038 8.2E-09 69.6 12.0 113 131-245 205-326 (517)
169 COG0457 NrfG FOG: TPR repeat [ 97.7 0.00099 2.1E-08 52.5 12.1 109 135-245 110-223 (291)
170 PF00515 TPR_1: Tetratricopept 97.7 7.7E-05 1.7E-09 46.3 4.5 34 154-188 1-34 (34)
171 PF07719 TPR_2: Tetratricopept 97.7 0.00012 2.5E-09 45.1 5.1 34 154-188 1-34 (34)
172 PF13424 TPR_12: Tetratricopep 97.6 2.1E-05 4.6E-10 57.5 1.5 60 186-246 2-68 (78)
173 PF05843 Suf: Suppressor of fo 97.6 0.00016 3.5E-09 66.4 7.5 97 155-252 2-98 (280)
174 PF06552 TOM20_plant: Plant sp 97.6 0.0002 4.3E-09 62.4 7.5 69 171-239 7-84 (186)
175 PLN03081 pentatricopeptide (PP 97.6 0.0002 4.3E-09 73.1 8.9 77 168-247 475-551 (697)
176 PF04184 ST7: ST7 protein; In 97.6 0.00048 1E-08 68.0 11.0 108 134-245 182-316 (539)
177 COG1729 Uncharacterized protei 97.6 0.00049 1.1E-08 63.1 10.3 78 167-245 153-236 (262)
178 KOG0376 Serine-threonine phosp 97.6 0.00011 2.4E-09 71.9 6.0 109 134-244 18-128 (476)
179 KOG2396 HAT (Half-A-TPR) repea 97.6 0.0013 2.7E-08 65.1 13.0 95 137-232 88-182 (568)
180 PRK04841 transcriptional regul 97.6 0.00084 1.8E-08 69.9 12.5 111 134-246 466-595 (903)
181 PLN03218 maturation of RBCL 1; 97.5 0.0013 2.8E-08 71.0 13.1 42 204-245 663-705 (1060)
182 KOG2610 Uncharacterized conser 97.5 0.00079 1.7E-08 64.0 9.7 110 134-245 117-230 (491)
183 PF14938 SNAP: Soluble NSF att 97.4 0.00042 9.2E-09 63.4 7.6 113 134-249 49-180 (282)
184 PF13525 YfiO: Outer membrane 97.4 0.0014 3E-08 57.2 10.4 82 154-237 5-92 (203)
185 PLN03081 pentatricopeptide (PP 97.4 0.0014 3E-08 67.0 11.2 111 134-250 273-386 (697)
186 PRK04841 transcriptional regul 97.4 0.0018 4E-08 67.3 12.0 110 134-245 505-633 (903)
187 PF03704 BTAD: Bacterial trans 97.4 0.0041 8.9E-08 50.7 11.7 49 168-217 75-123 (146)
188 PF13181 TPR_8: Tetratricopept 97.3 0.00041 9E-09 42.8 4.3 32 190-222 2-33 (34)
189 PF10300 DUF3808: Protein of u 97.3 0.0018 3.8E-08 63.9 10.9 110 132-243 245-359 (468)
190 KOG4648 Uncharacterized conser 97.3 0.00036 7.7E-09 66.5 5.7 83 161-245 104-186 (536)
191 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00033 7.1E-09 63.2 5.1 89 155-245 66-154 (297)
192 KOG3824 Huntingtin interacting 97.3 0.00038 8.2E-09 65.5 5.4 63 134-197 130-192 (472)
193 KOG1070 rRNA processing protei 97.3 0.0012 2.6E-08 71.5 9.7 115 134-250 1544-1660(1710)
194 COG3071 HemY Uncharacterized e 97.3 0.0049 1.1E-07 59.3 12.7 110 134-245 98-208 (400)
195 KOG2796 Uncharacterized conser 97.3 0.00083 1.8E-08 62.1 7.3 121 134-256 191-318 (366)
196 PF14938 SNAP: Soluble NSF att 97.3 0.00062 1.3E-08 62.3 6.4 110 135-246 89-218 (282)
197 PF13512 TPR_18: Tetratricopep 97.2 0.0036 7.8E-08 52.5 10.3 82 155-238 11-98 (142)
198 PLN03218 maturation of RBCL 1; 97.2 0.0038 8.3E-08 67.4 12.8 108 134-245 486-600 (1060)
199 KOG0545 Aryl-hydrocarbon recep 97.2 0.003 6.4E-08 58.0 10.0 93 134-228 192-302 (329)
200 COG4700 Uncharacterized protei 97.2 0.0051 1.1E-07 54.5 11.0 109 135-246 71-182 (251)
201 COG3118 Thioredoxin domain-con 97.1 0.0022 4.8E-08 59.7 8.7 109 134-246 148-258 (304)
202 KOG1915 Cell cycle control pro 97.1 0.0027 5.8E-08 62.7 9.7 112 134-248 380-495 (677)
203 KOG4507 Uncharacterized conser 97.1 0.0031 6.6E-08 63.6 9.5 100 134-235 621-721 (886)
204 KOG4234 TPR repeat-containing 97.1 0.0022 4.9E-08 57.2 7.5 78 167-245 107-189 (271)
205 KOG1308 Hsp70-interacting prot 97.0 0.00023 5E-09 67.4 0.7 88 134-223 128-215 (377)
206 PLN03077 Protein ECB2; Provisi 97.0 0.005 1.1E-07 64.4 10.5 110 134-250 538-651 (857)
207 KOG3081 Vesicle coat complex C 96.9 0.0086 1.9E-07 55.3 10.6 110 134-244 151-261 (299)
208 COG0790 FOG: TPR repeat, SEL1 96.9 0.025 5.4E-07 51.2 13.5 100 132-238 125-236 (292)
209 PF13181 TPR_8: Tetratricopept 96.9 0.0019 4.1E-08 39.7 4.3 33 155-188 2-34 (34)
210 COG5191 Uncharacterized conser 96.8 0.0018 4E-08 61.0 5.4 90 142-232 95-184 (435)
211 PF08424 NRDE-2: NRDE-2, neces 96.7 0.04 8.7E-07 51.7 13.3 96 140-236 5-111 (321)
212 KOG1915 Cell cycle control pro 96.7 0.0077 1.7E-07 59.6 8.5 114 133-249 86-199 (677)
213 KOG1130 Predicted G-alpha GTPa 96.7 0.0033 7.1E-08 61.3 5.8 110 133-244 208-335 (639)
214 KOG3081 Vesicle coat complex C 96.6 0.025 5.4E-07 52.3 11.1 92 134-226 187-278 (299)
215 PF13176 TPR_7: Tetratricopept 96.6 0.0041 8.9E-08 39.5 4.2 25 192-217 2-26 (36)
216 COG4105 ComL DNA uptake lipopr 96.6 0.044 9.6E-07 50.2 12.4 110 134-244 48-187 (254)
217 smart00028 TPR Tetratricopepti 96.5 0.004 8.7E-08 35.3 3.6 31 191-222 3-33 (34)
218 KOG4340 Uncharacterized conser 96.5 0.009 1.9E-07 56.3 7.6 110 134-245 58-199 (459)
219 KOG2376 Signal recognition par 96.5 0.012 2.7E-07 59.2 8.8 107 131-246 23-132 (652)
220 PF13281 DUF4071: Domain of un 96.5 0.034 7.3E-07 53.7 11.5 112 132-244 153-279 (374)
221 KOG2053 Mitochondrial inherita 96.4 0.027 5.8E-07 59.0 11.2 103 134-239 23-125 (932)
222 COG3914 Spy Predicted O-linked 96.4 0.033 7.2E-07 56.2 11.4 99 134-233 81-185 (620)
223 PF13174 TPR_6: Tetratricopept 96.4 0.0065 1.4E-07 36.7 4.2 31 191-222 2-32 (33)
224 PRK10941 hypothetical protein; 96.4 0.028 6E-07 51.9 10.0 60 167-227 193-252 (269)
225 COG0790 FOG: TPR repeat, SEL1 96.4 0.07 1.5E-06 48.3 12.4 101 132-236 89-199 (292)
226 PF03704 BTAD: Bacterial trans 96.4 0.049 1.1E-06 44.2 10.4 55 191-246 64-118 (146)
227 KOG2376 Signal recognition par 96.3 0.032 6.9E-07 56.3 10.6 108 134-246 93-246 (652)
228 PF14561 TPR_20: Tetratricopep 96.3 0.049 1.1E-06 42.0 9.5 49 139-188 7-55 (90)
229 PF14561 TPR_20: Tetratricopep 96.3 0.022 4.9E-07 43.9 7.5 66 174-240 7-74 (90)
230 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.024 5.2E-07 39.7 6.6 35 192-227 4-38 (53)
231 KOG1130 Predicted G-alpha GTPa 96.2 0.0062 1.3E-07 59.4 4.7 105 134-240 31-151 (639)
232 PF09613 HrpB1_HrpK: Bacterial 96.2 0.28 6E-06 42.1 14.3 107 134-245 24-130 (160)
233 PF10300 DUF3808: Protein of u 96.2 0.049 1.1E-06 53.8 11.1 115 131-246 199-327 (468)
234 PF09613 HrpB1_HrpK: Bacterial 96.2 0.081 1.7E-06 45.3 10.9 73 167-240 22-94 (160)
235 smart00028 TPR Tetratricopepti 96.1 0.01 2.3E-07 33.5 3.8 33 155-188 2-34 (34)
236 PF13176 TPR_7: Tetratricopept 96.1 0.012 2.6E-07 37.3 4.2 32 156-188 1-34 (36)
237 COG4976 Predicted methyltransf 96.1 0.0074 1.6E-07 54.8 4.3 56 134-190 9-64 (287)
238 KOG2610 Uncharacterized conser 96.1 0.026 5.6E-07 54.0 8.0 112 135-248 152-271 (491)
239 KOG3364 Membrane protein invol 96.0 0.059 1.3E-06 45.2 8.9 92 135-227 13-108 (149)
240 KOG2471 TPR repeat-containing 95.9 0.015 3.1E-07 57.9 5.9 102 134-237 254-382 (696)
241 PF10373 EST1_DNA_bind: Est1 D 95.9 0.029 6.3E-07 50.1 7.3 62 174-236 1-62 (278)
242 PF13174 TPR_6: Tetratricopept 95.9 0.02 4.3E-07 34.5 4.3 33 155-188 1-33 (33)
243 KOG0530 Protein farnesyltransf 95.8 0.11 2.4E-06 48.2 10.8 110 134-244 57-167 (318)
244 COG4976 Predicted methyltransf 95.8 0.016 3.4E-07 52.7 5.0 58 167-225 7-64 (287)
245 PF08424 NRDE-2: NRDE-2, neces 95.7 0.17 3.7E-06 47.4 12.1 110 135-245 46-175 (321)
246 COG4105 ComL DNA uptake lipopr 95.7 0.089 1.9E-06 48.2 9.6 59 167-226 46-107 (254)
247 KOG1941 Acetylcholine receptor 95.7 0.038 8.2E-07 53.3 7.4 110 134-245 136-267 (518)
248 KOG3785 Uncharacterized conser 95.6 0.069 1.5E-06 51.5 9.0 105 134-244 71-205 (557)
249 PF13374 TPR_10: Tetratricopep 95.6 0.031 6.6E-07 35.3 4.7 29 190-219 3-31 (42)
250 KOG1310 WD40 repeat protein [G 95.6 0.054 1.2E-06 54.4 8.5 90 134-224 388-479 (758)
251 PF04184 ST7: ST7 protein; In 95.6 0.15 3.3E-06 50.8 11.3 92 134-226 273-382 (539)
252 PF09986 DUF2225: Uncharacteri 95.5 0.39 8.4E-06 42.8 13.0 101 134-236 91-212 (214)
253 KOG0551 Hsp90 co-chaperone CNS 95.4 0.062 1.3E-06 51.2 7.9 86 134-221 95-184 (390)
254 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.083 1.8E-06 37.0 6.6 40 156-196 3-42 (53)
255 PF02259 FAT: FAT domain; Int 95.2 0.32 7E-06 44.5 12.0 108 134-242 160-310 (352)
256 KOG0376 Serine-threonine phosp 95.2 0.0075 1.6E-07 59.3 1.1 76 168-244 17-92 (476)
257 KOG1308 Hsp70-interacting prot 95.2 0.0056 1.2E-07 58.2 0.1 77 167-244 126-202 (377)
258 KOG1070 rRNA processing protei 95.2 0.18 3.9E-06 55.4 11.2 115 134-249 1472-1625(1710)
259 KOG1586 Protein required for f 95.1 0.12 2.6E-06 47.2 8.5 81 168-248 86-178 (288)
260 KOG0545 Aryl-hydrocarbon recep 95.1 0.097 2.1E-06 48.3 7.9 87 156-244 180-284 (329)
261 KOG2796 Uncharacterized conser 95.1 0.12 2.5E-06 48.2 8.3 89 134-224 226-320 (366)
262 PF11207 DUF2989: Protein of u 95.0 0.31 6.7E-06 43.3 10.6 72 169-243 121-197 (203)
263 KOG4340 Uncharacterized conser 95.0 0.054 1.2E-06 51.2 6.0 75 169-244 24-98 (459)
264 PF13281 DUF4071: Domain of un 95.0 0.14 3E-06 49.5 8.9 125 132-258 194-339 (374)
265 PF04781 DUF627: Protein of un 94.9 0.24 5.2E-06 40.0 8.7 86 134-220 10-108 (111)
266 KOG1586 Protein required for f 94.9 0.24 5.1E-06 45.4 9.6 92 134-226 87-190 (288)
267 KOG1550 Extracellular protein 94.8 0.22 4.8E-06 50.2 10.3 100 131-234 260-370 (552)
268 KOG2047 mRNA splicing factor [ 94.8 0.13 2.9E-06 52.6 8.5 112 134-246 491-608 (835)
269 PF13374 TPR_10: Tetratricopep 94.7 0.081 1.8E-06 33.2 4.7 30 154-184 2-31 (42)
270 COG3914 Spy Predicted O-linked 94.7 0.18 3.9E-06 51.0 9.1 108 136-244 47-162 (620)
271 KOG0551 Hsp90 co-chaperone CNS 94.6 0.087 1.9E-06 50.2 6.5 83 160-244 87-173 (390)
272 PF10373 EST1_DNA_bind: Est1 D 94.6 0.14 2.9E-06 45.7 7.4 62 139-201 1-62 (278)
273 KOG1550 Extracellular protein 94.5 0.61 1.3E-05 47.0 12.7 83 135-221 308-395 (552)
274 KOG1310 WD40 repeat protein [G 94.4 0.068 1.5E-06 53.7 5.4 90 169-258 388-479 (758)
275 KOG2047 mRNA splicing factor [ 94.3 0.41 8.9E-06 49.2 10.7 121 134-256 401-543 (835)
276 KOG1585 Protein required for f 94.3 0.37 8.1E-06 44.4 9.5 110 132-244 43-170 (308)
277 KOG2396 HAT (Half-A-TPR) repea 94.3 0.76 1.7E-05 46.0 12.3 62 136-197 121-182 (568)
278 KOG3785 Uncharacterized conser 94.2 0.27 5.9E-06 47.5 8.9 81 134-216 36-117 (557)
279 KOG1941 Acetylcholine receptor 94.1 0.14 3E-06 49.6 6.7 111 134-246 97-228 (518)
280 TIGR02561 HrpB1_HrpK type III 94.1 0.31 6.7E-06 41.4 8.1 85 134-221 24-108 (153)
281 COG2976 Uncharacterized protei 93.8 0.47 1E-05 42.1 8.9 87 134-223 103-192 (207)
282 KOG2300 Uncharacterized conser 93.8 0.62 1.3E-05 46.6 10.6 114 132-245 21-148 (629)
283 KOG0529 Protein geranylgeranyl 93.7 0.76 1.6E-05 44.8 10.9 100 136-235 91-194 (421)
284 COG3898 Uncharacterized membra 93.6 1.1 2.4E-05 43.9 11.8 108 135-245 99-209 (531)
285 PRK10941 hypothetical protein; 93.4 0.59 1.3E-05 43.2 9.3 61 134-195 195-255 (269)
286 smart00386 HAT HAT (Half-A-TPR 93.2 0.26 5.7E-06 29.0 4.6 29 205-233 2-30 (33)
287 KOG3617 WD40 and TPR repeat-co 93.2 0.46 1E-05 50.2 9.0 109 134-244 814-987 (1416)
288 KOG1258 mRNA processing protei 93.2 1.3 2.7E-05 45.0 11.9 110 133-244 310-420 (577)
289 KOG4507 Uncharacterized conser 93.1 0.22 4.8E-06 50.7 6.4 105 138-244 197-303 (886)
290 COG2912 Uncharacterized conser 93.0 0.43 9.4E-06 44.1 7.8 60 167-227 193-252 (269)
291 PF04910 Tcf25: Transcriptiona 92.9 1.8 3.9E-05 41.5 12.1 97 146-244 32-159 (360)
292 TIGR02561 HrpB1_HrpK type III 92.8 1.9 4.1E-05 36.7 10.8 72 168-240 23-94 (153)
293 PF12862 Apc5: Anaphase-promot 92.7 1.1 2.3E-05 34.3 8.5 55 167-222 10-73 (94)
294 KOG2053 Mitochondrial inherita 92.6 1.3 2.8E-05 47.0 11.3 101 134-237 57-157 (932)
295 smart00386 HAT HAT (Half-A-TPR 92.6 0.37 8.1E-06 28.3 4.7 29 135-163 2-30 (33)
296 COG3898 Uncharacterized membra 92.5 1.4 3E-05 43.2 10.6 104 134-244 243-349 (531)
297 PF12968 DUF3856: Domain of Un 92.1 3.1 6.7E-05 34.5 10.8 84 134-219 23-129 (144)
298 COG5191 Uncharacterized conser 91.9 0.2 4.2E-06 47.7 4.1 63 135-197 122-184 (435)
299 PF02259 FAT: FAT domain; Int 91.3 2.4 5.2E-05 38.7 10.7 68 155-222 253-341 (352)
300 PF07720 TPR_3: Tetratricopept 91.1 0.77 1.7E-05 29.5 5.1 33 190-223 2-36 (36)
301 KOG1914 mRNA cleavage and poly 91.1 2 4.4E-05 43.5 10.4 112 136-248 347-459 (656)
302 PF07721 TPR_4: Tetratricopept 90.8 0.31 6.8E-06 28.6 2.8 23 191-214 3-25 (26)
303 PF11207 DUF2989: Protein of u 90.7 1.2 2.6E-05 39.6 7.6 71 137-210 123-198 (203)
304 PF07079 DUF1347: Protein of u 90.6 3.8 8.1E-05 40.9 11.6 46 168-215 475-520 (549)
305 KOG1258 mRNA processing protei 90.5 6.4 0.00014 40.1 13.4 105 134-239 380-490 (577)
306 KOG2471 TPR repeat-containing 90.4 0.54 1.2E-05 47.1 5.6 107 139-247 225-358 (696)
307 PF08631 SPO22: Meiosis protei 90.2 5.4 0.00012 36.4 11.9 111 134-245 7-142 (278)
308 KOG0530 Protein farnesyltransf 90.0 3.1 6.7E-05 38.8 9.9 90 134-241 40-129 (318)
309 PF04781 DUF627: Protein of un 89.8 2.3 5E-05 34.3 7.9 78 167-244 8-98 (111)
310 PF10602 RPN7: 26S proteasome 89.7 2.7 5.9E-05 36.1 9.0 92 155-248 37-137 (177)
311 KOG3617 WD40 and TPR repeat-co 89.7 2.1 4.6E-05 45.5 9.4 84 134-219 872-996 (1416)
312 KOG4014 Uncharacterized conser 88.9 5.1 0.00011 35.8 9.9 100 131-236 84-212 (248)
313 PF00244 14-3-3: 14-3-3 protei 88.8 1.3 2.9E-05 39.9 6.6 47 137-183 143-197 (236)
314 smart00101 14_3_3 14-3-3 homol 88.7 3.9 8.6E-05 37.3 9.6 49 171-219 144-200 (244)
315 KOG1914 mRNA cleavage and poly 88.7 4.1 9E-05 41.4 10.4 121 134-255 380-503 (656)
316 smart00101 14_3_3 14-3-3 homol 88.2 1.8 3.9E-05 39.5 7.1 49 136-184 144-200 (244)
317 KOG0529 Protein geranylgeranyl 88.0 6.2 0.00014 38.6 10.9 104 136-239 45-160 (421)
318 PF12862 Apc5: Anaphase-promot 87.1 6.8 0.00015 29.8 8.8 53 134-187 12-73 (94)
319 PF12968 DUF3856: Domain of Un 86.6 4.1 8.9E-05 33.8 7.5 89 156-245 9-121 (144)
320 PF07720 TPR_3: Tetratricopept 85.6 3 6.5E-05 26.7 5.1 33 155-188 2-36 (36)
321 COG3629 DnrI DNA-binding trans 85.2 5.7 0.00012 37.0 8.8 80 136-219 137-216 (280)
322 COG2976 Uncharacterized protei 85.2 10 0.00022 33.8 9.9 75 168-244 102-179 (207)
323 PF08631 SPO22: Meiosis protei 85.1 5.2 0.00011 36.5 8.5 77 167-244 5-104 (278)
324 PF11846 DUF3366: Domain of un 85.0 5.9 0.00013 33.9 8.3 51 171-223 127-177 (193)
325 PF07721 TPR_4: Tetratricopept 84.9 1.2 2.6E-05 26.0 2.8 25 155-180 2-26 (26)
326 PF00244 14-3-3: 14-3-3 protei 84.9 3.4 7.3E-05 37.3 7.0 49 171-219 142-198 (236)
327 KOG3364 Membrane protein invol 84.8 4.7 0.0001 34.0 7.2 62 131-193 46-109 (149)
328 PF02184 HAT: HAT (Half-A-TPR) 84.2 2.1 4.5E-05 27.1 3.7 28 135-163 2-29 (32)
329 KOG2300 Uncharacterized conser 83.6 16 0.00035 36.9 11.5 109 132-245 379-506 (629)
330 COG4455 ImpE Protein of avirul 83.4 24 0.00053 32.3 11.6 88 134-222 15-118 (273)
331 PRK13184 pknD serine/threonine 82.2 6.7 0.00014 42.3 8.9 90 134-225 489-587 (932)
332 PF04910 Tcf25: Transcriptiona 81.9 11 0.00023 36.2 9.5 89 133-222 116-225 (360)
333 KOG4814 Uncharacterized conser 81.8 11 0.00024 39.2 9.7 90 152-244 353-448 (872)
334 KOG4814 Uncharacterized conser 81.7 6.9 0.00015 40.6 8.3 85 134-220 368-458 (872)
335 COG2909 MalT ATP-dependent tra 81.5 15 0.00033 39.2 10.9 109 134-244 429-557 (894)
336 KOG4014 Uncharacterized conser 81.0 7.8 0.00017 34.6 7.4 97 134-235 49-155 (248)
337 KOG0546 HSP90 co-chaperone CPR 80.4 1.6 3.4E-05 42.0 3.1 103 134-238 236-357 (372)
338 smart00671 SEL1 Sel1-like repe 79.8 3 6.6E-05 25.2 3.4 29 191-219 3-34 (36)
339 KOG2422 Uncharacterized conser 79.7 19 0.00041 37.0 10.5 87 134-221 356-450 (665)
340 COG4941 Predicted RNA polymera 79.6 13 0.00028 36.0 8.9 92 135-229 311-404 (415)
341 KOG1585 Protein required for f 78.9 29 0.00063 32.3 10.6 79 166-245 42-131 (308)
342 PF11846 DUF3366: Domain of un 78.8 12 0.00026 32.0 7.9 56 131-188 122-177 (193)
343 KOG2422 Uncharacterized conser 78.8 39 0.00085 34.8 12.4 120 134-255 252-412 (665)
344 TIGR02996 rpt_mate_G_obs repea 78.6 4.4 9.5E-05 27.2 3.9 30 178-208 5-34 (42)
345 PF10345 Cohesin_load: Cohesin 78.6 39 0.00084 34.4 12.8 85 136-222 37-131 (608)
346 PF10516 SHNi-TPR: SHNi-TPR; 77.8 4.1 9E-05 26.5 3.6 29 190-219 2-30 (38)
347 COG2912 Uncharacterized conser 76.7 10 0.00022 35.2 7.2 62 134-196 195-256 (269)
348 COG3118 Thioredoxin domain-con 76.2 6.5 0.00014 37.0 5.8 55 167-222 146-200 (304)
349 PF10579 Rapsyn_N: Rapsyn N-te 75.9 17 0.00037 27.7 7.0 51 168-219 19-72 (80)
350 KOG3807 Predicted membrane pro 75.8 9.8 0.00021 36.9 7.0 106 135-244 199-331 (556)
351 PF04212 MIT: MIT (microtubule 75.3 8.9 0.00019 27.4 5.3 32 136-183 2-33 (69)
352 COG5107 RNA14 Pre-mRNA 3'-end 75.3 11 0.00025 37.7 7.4 85 136-221 413-497 (660)
353 cd02681 MIT_calpain7_1 MIT: do 75.0 7.5 0.00016 29.2 4.9 32 137-184 4-35 (76)
354 COG4455 ImpE Protein of avirul 74.3 15 0.00034 33.5 7.5 57 168-225 14-70 (273)
355 COG4649 Uncharacterized protei 73.9 43 0.00093 29.7 9.9 109 134-245 72-188 (221)
356 PF02184 HAT: HAT (Half-A-TPR) 73.6 7 0.00015 24.7 3.7 27 205-232 2-28 (32)
357 PF14863 Alkyl_sulf_dimr: Alky 73.6 26 0.00057 29.2 8.3 34 167-200 82-115 (141)
358 cd02682 MIT_AAA_Arch MIT: doma 73.4 8.7 0.00019 28.8 4.9 14 137-150 4-17 (75)
359 PF09986 DUF2225: Uncharacteri 73.4 23 0.0005 31.4 8.5 61 136-197 141-208 (214)
360 PF08238 Sel1: Sel1 repeat; I 73.1 8.1 0.00018 23.7 4.1 15 205-219 23-37 (39)
361 PF14863 Alkyl_sulf_dimr: Alky 73.0 13 0.00028 31.1 6.4 50 191-241 72-121 (141)
362 TIGR02996 rpt_mate_G_obs repea 71.5 8.8 0.00019 25.7 4.0 34 141-175 3-36 (42)
363 PF05053 Menin: Menin; InterP 70.6 16 0.00034 37.4 7.3 66 152-219 275-347 (618)
364 PF10579 Rapsyn_N: Rapsyn N-te 70.4 22 0.00048 27.1 6.5 51 134-184 20-72 (80)
365 PRK15490 Vi polysaccharide bio 70.4 25 0.00055 36.0 8.9 79 137-222 25-103 (578)
366 KOG3783 Uncharacterized conser 70.2 31 0.00068 35.0 9.3 73 150-223 444-524 (546)
367 PF13226 DUF4034: Domain of un 69.9 62 0.0013 30.1 10.7 66 174-239 62-148 (277)
368 cd02680 MIT_calpain7_2 MIT: do 69.7 11 0.00023 28.3 4.6 34 135-184 2-35 (75)
369 COG3947 Response regulator con 69.5 23 0.0005 33.7 7.7 44 203-246 292-335 (361)
370 COG2909 MalT ATP-dependent tra 68.5 31 0.00067 37.0 9.2 85 158-244 419-517 (894)
371 PF04190 DUF410: Protein of un 68.5 56 0.0012 29.7 10.1 67 152-219 88-170 (260)
372 cd02683 MIT_1 MIT: domain cont 68.2 14 0.00031 27.6 5.1 15 136-150 3-17 (77)
373 PF10602 RPN7: 26S proteasome 67.9 57 0.0012 27.9 9.5 85 134-220 50-143 (177)
374 cd02678 MIT_VPS4 MIT: domain c 66.7 16 0.00034 26.8 5.0 14 136-149 3-16 (75)
375 PF10345 Cohesin_load: Cohesin 65.8 1.3E+02 0.0028 30.6 13.1 109 134-244 74-199 (608)
376 PHA02537 M terminase endonucle 63.9 40 0.00086 30.6 8.0 88 134-223 97-211 (230)
377 PF04190 DUF410: Protein of un 63.3 53 0.0012 29.9 8.9 24 222-245 88-111 (260)
378 COG3629 DnrI DNA-binding trans 63.2 21 0.00045 33.3 6.2 56 190-246 154-209 (280)
379 PF07079 DUF1347: Protein of u 62.6 70 0.0015 32.2 9.9 108 134-246 394-517 (549)
380 cd02680 MIT_calpain7_2 MIT: do 62.1 18 0.00038 27.1 4.5 34 170-219 2-35 (75)
381 KOG2581 26S proteasome regulat 62.0 29 0.00062 34.4 7.0 57 168-225 222-282 (493)
382 smart00745 MIT Microtubule Int 61.8 23 0.00049 25.7 5.1 17 135-151 4-20 (77)
383 cd02684 MIT_2 MIT: domain cont 61.6 23 0.00049 26.3 5.1 32 136-183 3-34 (75)
384 KOG0128 RNA-binding protein SA 61.5 1.5E+02 0.0033 31.8 12.5 102 137-240 96-199 (881)
385 cd02677 MIT_SNX15 MIT: domain 61.2 20 0.00042 26.7 4.6 32 136-183 3-34 (75)
386 PF04053 Coatomer_WDAD: Coatom 60.6 36 0.00078 33.6 7.7 31 186-217 344-374 (443)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 60.2 46 0.001 26.9 7.1 44 173-217 81-126 (126)
388 PF09670 Cas_Cas02710: CRISPR- 59.8 1.4E+02 0.0029 28.8 11.4 51 134-184 145-198 (379)
389 smart00745 MIT Microtubule Int 59.6 18 0.00039 26.3 4.2 16 168-183 21-36 (77)
390 TIGR03504 FimV_Cterm FimV C-te 59.5 20 0.00042 24.1 4.0 25 193-218 3-27 (44)
391 COG5107 RNA14 Pre-mRNA 3'-end 59.4 79 0.0017 32.0 9.6 95 142-239 30-124 (660)
392 COG4649 Uncharacterized protei 59.1 77 0.0017 28.2 8.5 100 134-236 108-212 (221)
393 cd02682 MIT_AAA_Arch MIT: doma 58.1 18 0.0004 27.1 4.0 46 172-226 4-49 (75)
394 cd02677 MIT_SNX15 MIT: domain 57.9 16 0.00034 27.3 3.6 44 171-223 3-46 (75)
395 cd02656 MIT MIT: domain contai 57.0 21 0.00046 25.9 4.2 17 167-183 18-34 (75)
396 PF10516 SHNi-TPR: SHNi-TPR; 56.4 22 0.00047 23.1 3.7 29 155-184 2-30 (38)
397 cd02678 MIT_VPS4 MIT: domain c 56.4 31 0.00068 25.2 5.0 17 167-183 18-34 (75)
398 smart00299 CLH Clathrin heavy 56.4 99 0.0021 24.5 9.9 44 134-179 21-64 (140)
399 cd02679 MIT_spastin MIT: domai 54.8 29 0.00063 26.2 4.7 33 135-183 4-36 (79)
400 COG3947 Response regulator con 54.6 33 0.00072 32.7 5.9 51 167-218 291-341 (361)
401 PF12854 PPR_1: PPR repeat 54.0 31 0.00067 21.2 4.0 25 190-215 8-32 (34)
402 KOG0890 Protein kinase of the 53.6 99 0.0022 36.8 10.4 82 136-221 1645-1733(2382)
403 cd02656 MIT MIT: domain contai 52.3 41 0.00088 24.4 5.1 43 136-187 3-45 (75)
404 cd02683 MIT_1 MIT: domain cont 51.8 40 0.00087 25.1 5.0 16 207-222 30-45 (77)
405 KOG3783 Uncharacterized conser 51.4 74 0.0016 32.4 8.1 83 135-221 248-334 (546)
406 PF13041 PPR_2: PPR repeat fam 48.8 48 0.001 21.6 4.6 30 190-220 4-33 (50)
407 KOG0546 HSP90 co-chaperone CPR 48.4 20 0.00042 34.7 3.5 58 139-197 294-351 (372)
408 PF11817 Foie-gras_1: Foie gra 48.0 1.4E+02 0.003 26.7 8.9 50 134-184 152-207 (247)
409 COG4259 Uncharacterized protei 47.6 14 0.0003 29.7 2.0 54 172-226 54-108 (121)
410 KOG2041 WD40 repeat protein [G 47.4 55 0.0012 34.8 6.7 30 216-245 844-873 (1189)
411 PF04212 MIT: MIT (microtubule 45.9 54 0.0012 23.2 4.8 44 171-223 2-45 (69)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 45.2 90 0.002 25.2 6.5 44 138-182 81-126 (126)
413 PRK15180 Vi polysaccharide bio 44.6 78 0.0017 32.4 7.0 45 134-179 303-347 (831)
414 KOG0985 Vesicle coat protein c 44.6 1.8E+02 0.004 32.4 10.1 85 152-244 1102-1186(1666)
415 KOG2997 F-box protein FBX9 [Ge 44.3 40 0.00087 32.3 4.8 42 136-193 16-57 (366)
416 PF13226 DUF4034: Domain of un 43.9 1.8E+02 0.004 27.0 9.1 102 138-240 61-189 (277)
417 cd02684 MIT_2 MIT: domain cont 43.6 61 0.0013 23.9 4.9 44 171-223 3-46 (75)
418 TIGR03504 FimV_Cterm FimV C-te 43.5 50 0.0011 22.1 3.9 25 158-183 3-27 (44)
419 PF09797 NatB_MDM20: N-acetylt 43.3 1.1E+02 0.0025 28.8 7.9 44 171-215 199-242 (365)
420 PF01535 PPR: PPR repeat; Int 43.3 40 0.00087 19.0 3.2 16 203-218 13-28 (31)
421 PF10952 DUF2753: Protein of u 42.4 1.4E+02 0.003 25.0 7.1 30 192-222 53-86 (140)
422 PRK11619 lytic murein transgly 42.4 1.3E+02 0.0029 31.2 8.7 18 134-151 255-272 (644)
423 COG1747 Uncharacterized N-term 41.3 1.7E+02 0.0036 30.2 8.8 81 135-220 81-161 (711)
424 TIGR00756 PPR pentatricopeptid 40.9 68 0.0015 18.2 4.0 16 203-218 13-28 (35)
425 KOG0985 Vesicle coat protein c 40.6 1.3E+02 0.0027 33.6 8.2 67 167-244 1087-1153(1666)
426 smart00299 CLH Clathrin heavy 40.5 81 0.0018 25.0 5.6 75 168-245 20-103 (140)
427 KOG1839 Uncharacterized protei 40.5 53 0.0011 36.6 5.6 108 136-245 954-1078(1236)
428 PF04090 RNA_pol_I_TF: RNA pol 39.5 2.7E+02 0.0059 24.7 9.3 50 134-183 55-104 (199)
429 PF15015 NYD-SP12_N: Spermatog 39.3 3.1E+02 0.0067 27.7 10.1 108 134-244 190-318 (569)
430 cd02681 MIT_calpain7_1 MIT: do 39.2 69 0.0015 23.9 4.6 14 172-185 4-17 (76)
431 PF09670 Cas_Cas02710: CRISPR- 39.1 3.3E+02 0.0071 26.2 10.4 52 167-219 143-198 (379)
432 PF12583 TPPII_N: Tripeptidyl 39.0 49 0.0011 27.7 4.0 28 172-199 93-120 (139)
433 KOG0890 Protein kinase of the 38.7 2.2E+02 0.0048 34.1 10.2 99 134-236 1684-1801(2382)
434 cd09241 BRO1_ScRim20-like Prot 38.3 1.9E+02 0.0041 27.5 8.5 15 204-218 251-265 (355)
435 PRK13184 pknD serine/threonine 37.9 2.3E+02 0.005 30.9 9.9 90 135-226 534-627 (932)
436 PRK15490 Vi polysaccharide bio 37.5 1.2E+02 0.0027 31.2 7.4 75 167-244 20-94 (578)
437 PRK11619 lytic murein transgly 36.7 3.7E+02 0.008 27.9 10.9 43 203-245 325-367 (644)
438 KOG4279 Serine/threonine prote 36.3 44 0.00094 35.7 4.0 88 132-220 255-351 (1226)
439 PF15015 NYD-SP12_N: Spermatog 36.3 81 0.0018 31.6 5.7 76 169-245 197-283 (569)
440 PF07219 HemY_N: HemY protein 36.1 2E+02 0.0043 22.4 7.0 36 203-238 72-107 (108)
441 KOG1839 Uncharacterized protei 35.9 58 0.0013 36.3 5.1 111 134-246 987-1121(1236)
442 PF09205 DUF1955: Domain of un 35.9 2.8E+02 0.006 23.7 8.7 52 167-219 98-149 (161)
443 cd09034 BRO1_Alix_like Protein 35.6 1.9E+02 0.0041 26.9 8.0 16 203-218 264-279 (345)
444 KOG2997 F-box protein FBX9 [Ge 35.5 1.2E+02 0.0027 29.1 6.5 41 172-228 17-57 (366)
445 PF04053 Coatomer_WDAD: Coatom 35.2 1.7E+02 0.0037 29.0 7.9 60 152-221 345-404 (443)
446 PF11817 Foie-gras_1: Foie gra 35.2 1.1E+02 0.0023 27.4 6.1 54 190-244 179-238 (247)
447 PF01239 PPTA: Protein prenylt 35.0 1E+02 0.0022 18.3 4.5 23 175-197 3-25 (31)
448 KOG0739 AAA+-type ATPase [Post 34.7 2.3E+02 0.005 27.5 8.2 16 135-150 6-21 (439)
449 KOG2908 26S proteasome regulat 34.5 2.1E+02 0.0045 27.8 7.9 108 139-246 4-137 (380)
450 KOG3807 Predicted membrane pro 34.4 81 0.0018 30.8 5.2 81 169-252 198-303 (556)
451 PRK15180 Vi polysaccharide bio 34.2 1.2E+02 0.0025 31.1 6.4 76 168-244 302-377 (831)
452 KOG4279 Serine/threonine prote 33.0 1.7E+02 0.0038 31.5 7.7 101 134-235 301-411 (1226)
453 COG1747 Uncharacterized N-term 32.5 3.5E+02 0.0075 28.0 9.4 95 140-236 118-251 (711)
454 cd02679 MIT_spastin MIT: domai 32.2 88 0.0019 23.6 4.2 17 169-185 3-19 (79)
455 PF07219 HemY_N: HemY protein 32.2 2.4E+02 0.0052 21.9 7.0 31 167-197 71-101 (108)
456 PF10952 DUF2753: Protein of u 31.9 1.1E+02 0.0024 25.5 5.0 18 227-244 53-70 (140)
457 KOG0567 HEAT repeat-containing 31.7 4.2E+02 0.0091 24.9 9.2 92 145-241 160-251 (289)
458 PF12583 TPPII_N: Tripeptidyl 31.3 1.6E+02 0.0034 24.8 5.8 33 202-234 88-120 (139)
459 PF05053 Menin: Menin; InterP 31.0 1.5E+02 0.0033 30.6 6.7 46 137-183 296-346 (618)
460 PF15469 Sec5: Exocyst complex 30.2 3.3E+02 0.0072 22.9 8.0 19 167-185 98-116 (182)
461 PRK15326 type III secretion sy 30.0 2.5E+02 0.0054 21.4 7.2 31 169-199 21-51 (80)
462 PF04348 LppC: LppC putative l 29.9 17 0.00038 36.7 0.0 107 137-245 6-119 (536)
463 KOG2758 Translation initiation 29.7 2E+02 0.0043 28.0 6.9 78 138-218 113-195 (432)
464 COG2015 Alkyl sulfatase and re 29.4 1.3E+02 0.0029 30.6 6.0 49 195-244 458-506 (655)
465 KOG0276 Vesicle coat complex C 29.2 3.6E+02 0.0077 28.4 9.0 67 142-219 629-695 (794)
466 PHA00370 III attachment protei 28.8 3.2E+02 0.0069 25.5 7.8 22 203-224 252-273 (297)
467 COG4259 Uncharacterized protei 28.3 2.8E+02 0.006 22.4 6.5 36 154-190 72-107 (121)
468 PF13812 PPR_3: Pentatricopept 28.2 1.3E+02 0.0027 17.3 4.4 16 203-218 14-29 (34)
469 KOG2581 26S proteasome regulat 28.1 79 0.0017 31.4 4.1 55 134-189 223-281 (493)
470 PF09797 NatB_MDM20: N-acetylt 27.9 1.8E+02 0.004 27.4 6.6 42 204-245 197-238 (365)
471 TIGR02710 CRISPR-associated pr 27.9 3.8E+02 0.0083 26.1 8.8 47 134-180 144-196 (380)
472 PF14852 Fis1_TPR_N: Fis1 N-te 27.2 41 0.00088 21.4 1.4 27 191-217 3-31 (35)
473 KOG3540 Beta amyloid precursor 26.4 1.6E+02 0.0035 29.8 5.9 55 171-225 328-383 (615)
474 KOG3973 Uncharacterized conser 26.1 94 0.002 30.2 4.1 11 84-94 332-343 (465)
475 KOG2114 Vacuolar assembly/sort 26.1 2.2E+02 0.0048 30.8 7.1 28 155-183 369-396 (933)
476 PRK15326 type III secretion sy 25.9 2.2E+02 0.0048 21.7 5.4 31 203-233 20-50 (80)
477 KOG0994 Extracellular matrix g 25.8 2.7E+02 0.0059 31.5 7.8 78 169-246 1489-1588(1758)
478 smart00777 Mad3_BUB1_I Mad3/BU 25.4 2.3E+02 0.005 23.1 5.9 58 150-215 65-124 (125)
479 cd09246 BRO1_Alix_like_1 Prote 25.4 3.3E+02 0.0071 25.9 7.8 26 192-218 250-275 (353)
480 PF12753 Nro1: Nuclear pore co 25.3 1E+02 0.0023 30.2 4.4 14 206-219 378-391 (404)
481 PRK12798 chemotaxis protein; R 25.3 6.8E+02 0.015 24.9 11.6 62 167-228 160-223 (421)
482 PF12753 Nro1: Nuclear pore co 24.1 1E+02 0.0022 30.3 4.1 32 206-239 334-365 (404)
483 PRK12798 chemotaxis protein; R 24.1 7.2E+02 0.016 24.7 10.9 102 142-244 99-205 (421)
484 COG5536 BET4 Protein prenyltra 23.6 1.6E+02 0.0035 27.9 5.1 101 136-236 126-239 (328)
485 COG3107 LppC Putative lipoprot 23.0 6.2E+02 0.013 26.2 9.3 83 135-218 43-127 (604)
486 COG4941 Predicted RNA polymera 23.0 3E+02 0.0066 26.9 6.9 41 155-196 366-406 (415)
487 KOG3024 Uncharacterized conser 21.8 3.7E+02 0.008 25.5 7.1 42 174-216 105-153 (312)
488 cd09240 BRO1_Alix Protein-inte 20.8 5.6E+02 0.012 24.2 8.4 25 193-218 259-283 (346)
489 KOG2114 Vacuolar assembly/sort 20.6 2.3E+02 0.005 30.6 6.0 48 189-237 368-423 (933)
490 PF06957 COPI_C: Coatomer (COP 20.5 1.8E+02 0.0039 28.8 5.0 46 203-249 313-359 (422)
491 KOG2908 26S proteasome regulat 20.4 6.4E+02 0.014 24.6 8.5 51 166-218 86-143 (380)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=7e-15 Score=122.06 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|++++.++|.++.+|.++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+..|
T Consensus 38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~ 115 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAF 115 (144)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 57788888888888888888888888887765 46888888888888888888888888888877765 68888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Q 024536 214 DRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
++|++++|+++.++.+.+.++..
T Consensus 116 ~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 116 QTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHhCCCChHHHHHHHHHHHH
Confidence 88888888888887777766554
No 2
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=5.6e-15 Score=129.17 Aligned_cols=123 Identities=13% Similarity=0.170 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 024536 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD--APRAK 210 (266)
Q Consensus 133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd--~deAi 210 (266)
.++.++++..|+++++.+|+++.+|.++|.++. ..|++++|..+|++|++++|+++.++.++|.+++...|+ +++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 467899999999999999999999999999876 689999999999999999999999999999976554676 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536 211 SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 211 ~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~ 256 (266)
.++++|++++|+++.++..+|..+.+.|++++|++.-+..-..-||
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999765444444444
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=1.2e-14 Score=120.57 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (266)
Q Consensus 139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~ 218 (266)
-+.+|+++++++|++ ++++|..+. ..|++++|..+|++++.++|.++.+|.++|.++.. .|++++|+.+|++|++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence 357999999999996 567788776 58999999999999999999999999999998876 7999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 219 SAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 219 l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
++|+++.+++++|.++...|++++|++.-
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999643
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.56 E-value=2e-14 Score=142.11 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
|..+-|+..|++||++.|+.++++.|+|.+|. ..|+..+|+.||.+||.+.|+++++++|+|.++.+ ++.+++|..+|
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e~A~~ly 377 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIEEATRLY 377 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccchHHHHHH
Confidence 67888899999999999999999999988887 46888999999999999999999999999988876 68888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
++|++..|+.+.++.+||.+|.++|+.++|+.+
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 888888888888888888888888888888843
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.53 E-value=3.7e-15 Score=147.26 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e 214 (266)
.+++|+.+|.+|+.+.|+++.++.|+|.+++ .+|+++-|+.+|+|||+++|+.+.++.|+|+++-+ .|+.++|+.+|.
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy-eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYn 344 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYY-EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYN 344 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEe-ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHH
Confidence 3344444444444444444444444443333 25777777777777777777777777777777765 677788888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 215 RAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 215 kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
+|+.+.|+.+++.++||.++.++|..++|...-+
T Consensus 345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 8888888888888888888888888777775433
No 6
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=9.1e-14 Score=138.14 Aligned_cols=112 Identities=9% Similarity=0.038 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.++++|++++|+++.+|..+|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+.+|
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 56899999999999999999999999998776 58999999999999999999999999999998876 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
++|++++|+++.++..++.+++..|++++|++..
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999888777777788899999998653
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=9.9e-14 Score=137.90 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024536 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE--------IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH 203 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~--------~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~ 203 (266)
+.+++++|+++|++|++++|+++.+|.++|.++.. ..+++++|+.++++|++++|+++.++..+|.++.. .
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~ 351 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-H 351 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-c
Confidence 44678899999999999999999999999976431 12458999999999999999999999999988866 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536 204 KDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 204 gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~ 256 (266)
|++++|+.+|++|++++|+++.++..+|.++...|++++|++.-+..-.+.|.
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999765555444444
No 8
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=2.2e-13 Score=109.23 Aligned_cols=105 Identities=16% Similarity=0.066 Sum_probs=95.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536 141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA 220 (266)
Q Consensus 141 ~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~ 220 (266)
++|+++++++|++..+++.+|..+. ..+++++|..+|++++..+|+++.++.++|.++.. .+++++|+.+|++++.++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 4889999999999999999998876 57999999999999999999999999999998876 689999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 221 PDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 221 P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
|+++..+..+|.+++..|++++|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999998643
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.47 E-value=4.3e-13 Score=134.35 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|+++++++|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.+++++|.+++. .|++++|+.+|
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 422 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDY 422 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 57777777777777777777777777777665 46777777777777777777777777777776655 67777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
++++.++|++..++.++|.++...|++++|++.
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777777777777777777754
No 10
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=4.4e-13 Score=119.61 Aligned_cols=109 Identities=19% Similarity=0.295 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++..|.+-+++||+.||++..+|..+|.++ +..|+.+.|.+.|++|+.++|++.++++|||+++.. +|++++|..+|
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Y-q~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F 126 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYY-QKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQF 126 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHH
Confidence 5778888888888888888888888888655 367888888888888888888888888888888776 67777777777
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCcccccc
Q 024536 214 DRAVHSAPDD---CHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 214 ekAL~l~P~d---a~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++|+. +|.. +..+.|++.+-.++|+++.|.+
T Consensus 127 ~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 127 ERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 77776 4543 3457777777777777777764
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=6.9e-13 Score=132.84 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++|+.++|++..++.++|.+++. .|++++|+.+|
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~ 456 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMATF 456 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 68999999999999999999999999999876 58999999999999999999999999999998876 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
++++...|+++.++..+|.++...|++++|++..
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999999999999999999998543
No 12
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=6.2e-13 Score=122.28 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++|.+|+..|.+||+++|.|+..|-|.|.++. ..|.++.|.+-++.||.+||....+|..+|.+++. +|++++|++.|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ay 172 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEAY 172 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHHH
Confidence 79999999999999999999999999998886 57999999999999999999999999999999987 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDD 243 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA 243 (266)
+|||+++|++..++.+|.++-..+++....
T Consensus 173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~ 202 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKIAEQKLNEPKSS 202 (304)
T ss_pred HhhhccCCCcHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999888887733
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=1.4e-12 Score=120.06 Aligned_cols=110 Identities=11% Similarity=0.046 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+..|++|++++|+++.+|+++|.++. ..|++++|+..|++|++++|++..++.++|.+++. .|++++|+..|
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~~ 155 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDDL 155 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 68899999999999999999999999998876 68999999999999999999999999999998876 79999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+++++++|+++.... ...+....++.++|++.
T Consensus 156 ~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 156 LAFYQDDPNDPYRAL-WLYLAESKLDPKQAKEN 187 (296)
T ss_pred HHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHH
Confidence 999999999985322 22234455677888754
No 14
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.44 E-value=2e-12 Score=122.38 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.++++||.++|+++.+|+++|.+++. .|++++|+.+|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~~ 93 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAAL 93 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence 68999999999999999999999999999886 58999999999999999999999999999998877 79999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAG 238 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G 238 (266)
++|+.++|+++.+...++.+...+.
T Consensus 94 ~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 94 EKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999888888766553
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.43 E-value=1.1e-12 Score=138.39 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|++|++++|+ +.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 6899999999999999996 999999998876 58999999999999999999999999999998876 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ 249 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~ 249 (266)
++|++++|+++.++.++|.++...|++++|++.-+.
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999965433
No 16
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=1.2e-12 Score=116.87 Aligned_cols=111 Identities=23% Similarity=0.264 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
++.+.|.+.|++|+.++|++.++++|||.||+ .+|++++|..+|++|+.. -|..+..+-|+|++.++ +|+++.|..
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~gq~~~A~~ 160 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK-AGQFDQAEE 160 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-cCCchhHHH
Confidence 78999999999999999999999999999999 479999999999999985 35667899999988876 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+|+|+++++|+++.++..++..+++.|++.+|..-
T Consensus 161 ~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 161 YLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred HHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 99999999999999999999999999999999843
No 17
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1.3e-13 Score=136.71 Aligned_cols=124 Identities=16% Similarity=0.143 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++++.|+++|+||+++||+++.+|..+|.-+. ...++|+|+.+|+.||..+|.+-.||+.+|.+|.+ +++++.|+-+|
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek~e~Ae~~f 512 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEKLEFAEFHF 512 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cchhhHHHHHH
Confidence 68899999999999999999988888886443 45778999999999999999999999999988876 78899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCCCCC
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNIL 259 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~~~~ 259 (266)
++|++++|.+..+...++.++.+.|+.++|++.-+..-|+-|.+.+
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 9999999998888888999999999999998877777776666553
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=6.3e-12 Score=105.57 Aligned_cols=111 Identities=23% Similarity=0.309 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~da~al~nla~ll~~~~gd~deAi~ 211 (266)
+++++|+++|+++++.+|.++.++.++|.++. ..|++++|+.+|++++... |.....+.++|.++.. .|++++|+.
T Consensus 79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~ 156 (234)
T TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGDFDKAEK 156 (234)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCCHHHHHH
Confidence 57788888888888888888888888887765 5788888888888888753 4556777778877765 788888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+|++++..+|+++.++..++.++...|++++|.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888888888888888888888754
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.38 E-value=3.4e-12 Score=129.55 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVK----AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~----A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA 209 (266)
+++++|+..|+++++.+|+++.+++++|.++. ..|++++ |+.+|++|++++|+++.++.++|.++.. .|++++|
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA 303 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEKA 303 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 68899999999999999999999999998776 4788875 8999999999999999999999988876 7899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
+.+|++++.++|+++.++..++.++...|++++|+++-
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999998653
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.3e-11 Score=103.70 Aligned_cols=111 Identities=22% Similarity=0.359 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+..|+++++.+|+++.++..+|.++. ..|++++|+.+|++++..+|.++.++.+++.++.. .|++++|+.+|
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~ 122 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQF 122 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHHH
Confidence 68999999999999999999999999998876 58999999999999999999999999999998876 89999999999
Q ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSA--PDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~--P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
++++... |....++..+|.+++..|++++|++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999864 45677889999999999999999854
No 21
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=5.2e-12 Score=129.06 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+.+++|+.+++++++++|++..++.+++.+|. ..+++++|+..+++++..+|+++.+++.+|.++.+ .|++++|+.+|
T Consensus 100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~~y 177 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADACF 177 (694)
T ss_pred CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHHHH
Confidence 78899999999999999999999999999997 57999999999999999999999999999998866 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+++++.+|+++.++.++|.++...|+.++|..
T Consensus 178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999984
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=4.8e-12 Score=116.51 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=101.5
Q ss_pred CCHHHHHHHHHHHHHHCC---CC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYP---ED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P---~~-~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA 209 (266)
...+.++..+.++|...| .+ +.+|+++|.++. ..|++++|...|++|++++|+++.+|+++|.++.. .|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 477899999999997444 33 678999998775 68999999999999999999999999999988866 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
+..|++|++++|++..++.++|.++...|++++|++..
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~ 155 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDL 155 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999643
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=1.4e-11 Score=98.83 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|++++..+|.++.++.++|.++. ..+++++|..+|++++..+|.++.+++++|.+++. .|++++|+.+|
T Consensus 31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 108 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPESALKAL 108 (135)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 68999999999999999999999999999886 57999999999999999999999999999998876 79999999999
Q ss_pred HHHHHhCCCCHHHH
Q 024536 214 DRAVHSAPDDCHVL 227 (266)
Q Consensus 214 ekAL~l~P~da~a~ 227 (266)
+++++++|++....
T Consensus 109 ~~al~~~p~~~~~~ 122 (135)
T TIGR02552 109 DLAIEICGENPEYS 122 (135)
T ss_pred HHHHHhccccchHH
Confidence 99999999988754
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=1.6e-12 Score=117.46 Aligned_cols=112 Identities=22% Similarity=0.251 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
|+.++|+.+|++||+++|+++.++..++.++. ..|+++++...+++.....|.|+..+..+|.++.. .|++++|+.+|
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~~Al~~~ 237 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYEEALEYL 237 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccccccccccc
Confidence 57788888888888888888888888887765 46778888888888777778888888888888766 68999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
++++..+|+|+.++..||.++...|+.++|.++.
T Consensus 238 ~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 238 EKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999764
No 25
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=1.4e-11 Score=107.65 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD--FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd--~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
+++++|+.+|++|++++|+++.++.++|.+++...|+ +++|.+.+++|++++|+++.+++++|..+++ .|++++|+.
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~ 165 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADYAQAIE 165 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHH
Confidence 6899999999999999999999999999976545676 5999999999999999999999999998877 899999999
Q ss_pred HHHHHHHhCCCCHH
Q 024536 212 YFDRAVHSAPDDCH 225 (266)
Q Consensus 212 ~~ekAL~l~P~da~ 225 (266)
+|+++++++|.+..
T Consensus 166 ~~~~aL~l~~~~~~ 179 (198)
T PRK10370 166 LWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHhhCCCCcc
Confidence 99999999996543
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.1e-12 Score=130.25 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++|+|..+|++||..+|.+..||+-+|.++. .+++++.|+-+|++|+.++|.+...+..+|.++.+ .|+.|+|+.+|
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~ 546 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLY 546 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHH
Confidence 88999999999999999999999999999876 58999999999999999999999999999998866 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCC
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCAS 254 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~ 254 (266)
++|+.++|.|+-..+..|.+++..+++++|.++-|.-....
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999997644433333
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.31 E-value=2.6e-11 Score=120.91 Aligned_cols=110 Identities=25% Similarity=0.326 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|+++++.+|+++.++.+++.++. ..++ .+|+.++++++.+.|+++.++.++|.++.. .|++++|+.+|
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 45566666666666666666666666655544 2444 556666666666666666666666665544 56666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+++++++|.++.++..++.+++..|++++|++.
T Consensus 861 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666666666666666666543
No 28
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.31 E-value=2.6e-11 Score=109.63 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++..|+..+++|.+++|+|+.+|+.+|.+|. ..|+++.|...|.+|+++.|+++.++.|+|..++. .||++.|+.++
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~ll 191 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETLL 191 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHHH
Confidence 68899999999999999999999999999885 68999999999999999999999999999988765 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
.+|....+.+..+..+++.+.-.+|++++|.++..
T Consensus 192 l~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 192 LPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999999999999999999999997643
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-11 Score=118.77 Aligned_cols=110 Identities=20% Similarity=0.165 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|++||++||....+|..+|.-+.+ +++..+|...|++||+++|-|-.+|+.+|..|.. .+-..=|+-||
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYf 421 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYF 421 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHH
Confidence 689999999999999999999999999987654 6888999999999999999999999999998854 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++|+.+.|+|..+|..+|.+|-..++.+||++
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999994
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.30 E-value=1.8e-11 Score=129.23 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+.+|
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 78999999999999999999999999999886 58999999999999999999999999999999866 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++|++++|+++.+...++.++....+++.|.+
T Consensus 701 ~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 701 RLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887774
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.29 E-value=5.8e-11 Score=100.77 Aligned_cols=86 Identities=12% Similarity=-0.061 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+++|+-++.++|.++..|++||.++. .+|++++|+.+|.+|+.++|+||.++.++|.++.. .|+.+.|+..|
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~aF 126 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIKAL 126 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHHHH
Confidence 68889999999999999999999999988775 67889999999999999999999999998888876 78899999999
Q ss_pred HHHHHhCC
Q 024536 214 DRAVHSAP 221 (266)
Q Consensus 214 ekAL~l~P 221 (266)
+.||...-
T Consensus 127 ~~Ai~~~~ 134 (157)
T PRK15363 127 KAVVRICG 134 (157)
T ss_pred HHHHHHhc
Confidence 99988873
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.29 E-value=2.6e-11 Score=129.86 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW------------- 200 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~------------- 200 (266)
+++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|++|++++|+++.++..++.++.
T Consensus 365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 68999999999999999999999999999886 6899999999999999999999988877765431
Q ss_pred ----------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 201 ----------------------------INHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 201 ----------------------------~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
...|++++|+.+|++|++++|+++.++..+|.+++..|++++|++.-+
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 126899999999999999999999999999999999999999996543
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.29 E-value=3.4e-11 Score=122.33 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536 138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV 217 (266)
Q Consensus 138 eA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL 217 (266)
+|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|+..|++++
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA~~~l~~al 345 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 5999999999999999999999999886 58999999999999999999999999999998876 899999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 218 HSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 218 ~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
..+|+++.++..+|.++...|+.++|++.
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999988888889999999999999964
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.29 E-value=1.7e-11 Score=88.01 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 024536 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-DAPRAKSYFDRAVHSAP 221 (266)
Q Consensus 152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g-d~deAi~~~ekAL~l~P 221 (266)
+++.+|.++|..+. ..+++++|+.+|++||+++|+++.+|+++|.+++. .+ ++++|+.+|++|++++|
T Consensus 1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 46889999999887 58999999999999999999999999999999877 77 79999999999999998
No 35
>PRK11906 transcriptional regulator; Provisional
Probab=99.26 E-value=2.9e-11 Score=117.17 Aligned_cols=125 Identities=12% Similarity=0.013 Sum_probs=110.2
Q ss_pred CCCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536 131 DSGKESESMDVYYQEMI---KAYPEDALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rAL---el~P~~~~al~nlA~~L~~~--------~gd~e~A~~~~erAL~ldP~da~al~nla~ll 199 (266)
+++...++|..+|.+|+ +++|+++.+|..+|.+.... ..+..+|.++.++|++++|+|+.++..+|.++
T Consensus 269 ~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~ 348 (458)
T PRK11906 269 FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLIT 348 (458)
T ss_pred cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35578899999999999 99999999999888765321 23567899999999999999999999999988
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536 200 WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 200 ~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~ 256 (266)
+. .++++.|+..|+||+.++|+.+.+++.+|+++...|+.++|.++-+..-.++|.
T Consensus 349 ~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 349 GL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred Hh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 87 678999999999999999999999999999999999999999887776666664
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.25 E-value=5.3e-11 Score=127.59 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------HHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV--------------LSMYGDLI 199 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a--------------l~nla~ll 199 (266)
+++++|+.+|+++++++|+++.++..+|.++. ..|++++|+.+|++|++++|++... +...|.++
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 68999999999999999999999999999876 5899999999999999999987532 12335555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536 200 WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ 249 (266)
Q Consensus 200 ~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~ 249 (266)
.. .|++++|+.+|++|++++|+++.++..+|.++...|++++|++.-+.
T Consensus 362 ~~-~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 362 LK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55 79999999999999999999999999999999999999999965443
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.23 E-value=5.5e-11 Score=100.89 Aligned_cols=99 Identities=13% Similarity=-0.023 Sum_probs=90.2
Q ss_pred HHHHHC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 145 EMIKAY-PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (266)
Q Consensus 145 rALel~-P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d 223 (266)
-...+. ++.-+.++.||..++ ..|++++|++.|+-+..+||.++..|++||.++.. +|++++|+..|.+|+.++|+|
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence 344556 677788899998887 58999999999999999999999999999988855 899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccccc
Q 024536 224 CHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 224 a~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++++.++|.+++..|+.+.|.+
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999984
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.20 E-value=1.8e-10 Score=114.90 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+..++++++.+|+++.+++++|.++. ..|++++|+.+|+++++.+|+++.++.+++.++.. .++ .+|+.++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE-LKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc-HHHHHHH
Confidence 57888888999999999999999999998775 57999999999999999999999999999988866 677 8899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQE 250 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~ 250 (266)
++++.+.|+++.++..+|.++...|++++|++.-+..
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999998654433
No 39
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.18 E-value=6.4e-10 Score=86.01 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d 207 (266)
+++++|+.+|++++..+|++ +.+++.+|.++. ..+++++|..+|++++..+|++ +.++..+|.++.. .++++
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~ 93 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LGDKE 93 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hCChH
Confidence 68999999999999999987 578889998876 5799999999999999999886 6788899988876 78999
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 024536 208 RAKSYFDRAVHSAPDDCHVLA 228 (266)
Q Consensus 208 eAi~~~ekAL~l~P~da~a~~ 228 (266)
+|+.+|+++++..|++..+..
T Consensus 94 ~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 94 KAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999887653
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.17 E-value=4.2e-10 Score=116.09 Aligned_cols=110 Identities=13% Similarity=0.066 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+++++++.+|+++. +..+|.++.. .|++++|+.+|
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~l 139 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRAM 139 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHHH
Confidence 68899999999999999999999999998776 589999999999999999999999 9999988866 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+++++++|+++.++..++.++...++.++|++.
T Consensus 140 ~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 140 TQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999999999999998888887743
No 41
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=3.8e-10 Score=79.95 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|+++++..|.++.++..+|.++. ..+++++|..+|++++...|.+..++..++.++.. .+++++|..++
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~ 91 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEALEAY 91 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHHHHH
Confidence 45566666666666666666666666665554 34566666666666666666666666666655544 45666666666
Q ss_pred HHHHHhCC
Q 024536 214 DRAVHSAP 221 (266)
Q Consensus 214 ekAL~l~P 221 (266)
++++...|
T Consensus 92 ~~~~~~~~ 99 (100)
T cd00189 92 EKALELDP 99 (100)
T ss_pred HHHHccCC
Confidence 66666555
No 42
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.15 E-value=1.6e-10 Score=82.19 Aligned_cols=64 Identities=22% Similarity=0.395 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024536 159 NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDC 224 (266)
Q Consensus 159 nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da 224 (266)
.+|..++ ..|++++|+.+|+++++.+|+++.+++.+|.+++. +|++++|+.+|+++++++|++|
T Consensus 2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence 4666666 58999999999999999999999999999999986 8999999999999999999986
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=5.8e-10 Score=97.73 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWIN----- 202 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~---al~nla~ll~~~----- 202 (266)
+++++|+..|++++..+|+++ .+++++|.++. ..+++++|...|+++++..|+++. +++.+|.++...
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 689999999999999999987 58899998876 589999999999999999999887 688889888652
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcccccccc
Q 024536 203 --HKDAPRAKSYFDRAVHSAPDDCHVL-----------------ASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 203 --~gd~deAi~~~ekAL~l~P~da~a~-----------------~~lA~ll~~~G~~~eA~~~~ 247 (266)
.+++++|+..|++++..+|++..++ ..+|.+++..|++++|++.-
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1689999999999999999987543 35688899999999999543
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.14 E-value=4.8e-10 Score=104.48 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d-a~al~nla~ll~~~~gd~deAi~~ 212 (266)
+++++|+.+|+++++.+|++..+++.+|.++. ..|++++|..+|++++..+|.+ ..++..++.++.. .|++++|+.+
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~A~~~ 271 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAEGLEF 271 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 57888888888888888888888888887765 4788888888888888888876 3556677777665 6888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ 249 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~ 249 (266)
+++++...|+...+ ..++.++...|++++|++.-++
T Consensus 272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 272 LRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHH
Confidence 88888888876544 7788888888888888865433
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=5.5e-10 Score=97.89 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHH-----------
Q 024536 134 KESESMDVYYQEMIKAYPEDAL---VLANYAKFLKEI-------RGDFVKAEEYCGRAILAKPGDGNVL----------- 192 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~---al~nlA~~L~~~-------~gd~e~A~~~~erAL~ldP~da~al----------- 192 (266)
+++++|+..|+++++.+|+++. +++.+|.++... .+++++|.+.|++++..+|++..++
T Consensus 84 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~ 163 (235)
T TIGR03302 84 GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN 163 (235)
T ss_pred CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 6899999999999999999886 688888877532 2678999999999999999997653
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCccccccccc
Q 024536 193 ------SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 193 ------~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
..+|.+++. +|++++|+..|++++...|++ +.++..++.++...|++++|++..+
T Consensus 164 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 164 RLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 245666655 799999999999999997765 5799999999999999999996543
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.12 E-value=4.6e-10 Score=104.62 Aligned_cols=110 Identities=9% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-----VLSMYGDLIWINHKDAPR 208 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~-----al~nla~ll~~~~gd~de 208 (266)
+++++|+.+|+++++.+|.+..++.+++.++. ..|++++|..+|++++..+|.+.. .+..+|.++.. .+++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-RGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-CCCHHH
Confidence 35566666666666666666666666665543 355666666666666655554422 23344444433 455666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 209 AKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
|+.+|+++++.+|++..++..+|.++...|++++|++
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666666666655555566666666666666554
No 47
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.2e-10 Score=101.45 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH--KDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~--gd~deAi~ 211 (266)
.+.++.+.-++..|+.||+|+.-|..||.++. ..+++..|...|.+|+++.|++++++..||.+++... .+..+|..
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 56889999999999999999999999999886 6899999999999999999999999999999887653 35689999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~ 256 (266)
+|++|+++||+|..++..||..+++.|++.+|+.--+.+-.+.|+
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999543333333343
No 48
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.4e-10 Score=114.15 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P--~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
-.+..-.++|..|...+| .+++++..||.+++ ..++|++|..||+.||..+|+|...|+.||..+.. ..+.++|+.
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIs 485 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHH
Confidence 456677789999999999 89999999998776 58999999999999999999999999999999877 678999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
.|+||+.+.|...++++++|..+..+|.+.||+++
T Consensus 486 AY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 486 AYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999964
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6e-10 Score=107.77 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++..+|+..|++|++++|.|-.+|+.+|.++. .++...=|+-||++|+.+.|+|+..|..+|.+|.. .++.++|+.+|
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHH
Confidence 77899999999999999999999999999874 78888999999999999999999999999999866 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++|+...-.+..++..+|.++-+.++..+|.+
T Consensus 456 krai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 456 KRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999888999999999999999999984
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.09 E-value=1e-09 Score=113.31 Aligned_cols=116 Identities=15% Similarity=0.016 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++.++|++.|++++..+|..+.++.++|.++. ..+++++|..+|+++|+++|+++.++..++.++.. .+++++|+.++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 78899999999999999999999999999886 68999999999999999999999999999988876 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETC 252 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~ 252 (266)
+++++.+|+++. +..+|.++..+|+.++|++.-+....
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999965443333
No 51
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=9.7e-10 Score=103.09 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD--APRAKS 211 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd--~deAi~ 211 (266)
..++|+.++.++|+++|++..+|.+.+.++.. .+ ++++|+.++++++..+|.+..+|++.+.++.. .++ +++++.
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el~ 129 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKELE 129 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHHH
Confidence 45667777777777777777777666666643 33 45666666666666666666666666665544 333 255666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+++++++++|.|..+|...++++...+++++|+
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH
Confidence 666666666666666666666666666666665
No 52
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.08 E-value=6.2e-10 Score=78.81 Aligned_cols=90 Identities=17% Similarity=0.254 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536 156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235 (266)
Q Consensus 156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~ 235 (266)
+++++|.++. ..+++++|..++++++...|.+..++..+|.++.. .+++++|+.+|++++.+.|.+..++..++.++.
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 5678888776 47999999999999999999999999999998877 689999999999999999999999999999999
Q ss_pred HcCCcccccccc
Q 024536 236 DAGEEEDDDDGD 247 (266)
Q Consensus 236 ~~G~~~eA~~~~ 247 (266)
..++.++|.+..
T Consensus 80 ~~~~~~~a~~~~ 91 (100)
T cd00189 80 KLGKYEEALEAY 91 (100)
T ss_pred HHHhHHHHHHHH
Confidence 999999988543
No 53
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.08 E-value=3.8e-09 Score=88.88 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------HcC
Q 024536 134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI------NHK 204 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~------~~g 204 (266)
+++++|+.+|++|+.+.|+. +.+|.++|.++. ..|++++|+.+|++|+.++|.....+.++|.++.. ..|
T Consensus 49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 57788888888888887663 357888887665 57888888888888888888888888888877761 145
Q ss_pred CHH-------HHHHHHHHHHHhCCCCH
Q 024536 205 DAP-------RAKSYFDRAVHSAPDDC 224 (266)
Q Consensus 205 d~d-------eAi~~~ekAL~l~P~da 224 (266)
+++ +|+.+|++++..+|++.
T Consensus 128 ~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 128 DSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 544 66667777777887654
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.6e-10 Score=110.82 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI------------ 201 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~------------ 201 (266)
+++++|++.|++|++++|+++.++..++.++|. ++.+++++..|+.+++.-|+.++++..+|.++..
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 889999999999999999999999999887773 4455555555555555555555555555555444
Q ss_pred ----------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 202 ----------------------------NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 202 ----------------------------~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
+++|+.+|+.++.+|+++||.--.++..+|.+..++|+.++|++.+|
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555555555555555555566667777777777777765443
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.06 E-value=2.5e-10 Score=103.21 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAY--PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~--P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
++++++...+.++.... |.++.+|..+|.++. ..|+.++|+++|++||+++|+|+.++..+++++.. .|++++|..
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~ 201 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEARE 201 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHH
Confidence 68899999999988766 788899999998775 68999999999999999999999999999988876 789999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
.+++.....|.++.++..+|.++...|+.++|.+.-+
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999999999999999999999999996543
No 56
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.06 E-value=1e-09 Score=108.95 Aligned_cols=125 Identities=8% Similarity=-0.012 Sum_probs=101.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 024536 129 DGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI-------RGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLI 199 (266)
Q Consensus 129 ~~~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~-------~gd~e~A~~~~erAL~l--dP~da~al~nla~ll 199 (266)
+....+++.+|+.+|++|++++|+++.+|..++.++... ..++++|.+..++++.+ +|.++.+|..+|...
T Consensus 351 ~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~ 430 (517)
T PRK10153 351 NSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQA 430 (517)
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHH
Confidence 334457799999999999999999999999887654321 12356778888887775 888899998888776
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCC
Q 024536 200 WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQ 255 (266)
Q Consensus 200 ~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~ 255 (266)
.. +|++++|+.+|++|++++| ++.++..+|.++...|+.++|++.-+....+.|
T Consensus 431 ~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 431 LV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred Hh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 54 8999999999999999999 588999999999999999999976554444333
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4.5e-10 Score=109.23 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
.+.++-.+.|.+|..+||+|+.+|++.|.+.. ..+++++|.+-|++|+.++|++..++..++.++++ ++++++++..|
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~F 451 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAESMKTF 451 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 56678888999999999999999999999876 57889999999999999999999999999998888 67899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
+.+++.-|+-++++..+|.+|.++++++.|+++-+
T Consensus 452 ee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 452 EEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 99999999999999999999999999999996543
No 58
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=5.2e-09 Score=88.56 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----
Q 024536 134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD----- 205 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd----- 205 (266)
+++++|+.+|++++++.|+. +.++.++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .++
T Consensus 49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~a~ 126 (172)
T PRK02603 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RGEKAEEA 126 (172)
T ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChHhHh
Confidence 45666666666666665543 346666666554 35666666666666666666666666666665544 343
Q ss_pred ---------HHHHHHHHHHHHHhCCCC
Q 024536 206 ---------APRAKSYFDRAVHSAPDD 223 (266)
Q Consensus 206 ---------~deAi~~~ekAL~l~P~d 223 (266)
+++|+.++++++.++|++
T Consensus 127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 127 GDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 455666666666666665
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.04 E-value=1.5e-09 Score=111.08 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+...+++.-.+...+-.|+++.++.+||.+.. ..|.+++|+..++++++++|++..++.+++.++.+ ++++++|+..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~ 143 (694)
T PRK15179 66 HKPAAALPELLDYVRRYPHTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEI 143 (694)
T ss_pred cchHhhHHHHHHHHHhccccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHH
Confidence 44455555556666778999999999999886 68999999999999999999999999999999977 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
++++..+|+++.++..+|.++.++|++++|++..+
T Consensus 144 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 144 ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999997543
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=1.2e-09 Score=103.49 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536 160 YAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239 (266)
Q Consensus 160 lA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~ 239 (266)
.|..++ ..+++++|+.+|++||+++|+++.+|+++|.++.. .|++++|+.++++|+.++|+++.+++.+|.++...|+
T Consensus 8 ~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 344444 47999999999999999999999999999999876 7999999999999999999999999999999999999
Q ss_pred ccccccc
Q 024536 240 EEDDDDG 246 (266)
Q Consensus 240 ~~eA~~~ 246 (266)
+++|++.
T Consensus 86 ~~eA~~~ 92 (356)
T PLN03088 86 YQTAKAA 92 (356)
T ss_pred HHHHHHH
Confidence 9999954
No 61
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=2.5e-09 Score=96.88 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e 214 (266)
+-+.+..+..+++..+|.+..++..+|..+. ..|++..|+..+++|..++|+|+++|..+|.+|.+ .|+++.|..-|.
T Consensus 81 ~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay~ 158 (257)
T COG5010 81 DADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYR 158 (257)
T ss_pred cccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHHH
Confidence 4467777888889999999999988888775 57999999999999999999999999999998866 899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 215 RAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 215 kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
||+++.|+++.+..|+|..+.-.|++++|+.
T Consensus 159 qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 159 QALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999984
No 62
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.00 E-value=3.1e-09 Score=82.11 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 024536 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHVL 227 (266)
Q Consensus 154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a~ 227 (266)
+.+++..|..+. ..+++++|..+|++++..+|++ +.+++.+|.++.. .+++++|+.+|++++...|++ +.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 456788888776 5899999999999999999987 5788999999877 799999999999999999986 6789
Q ss_pred HHHHHHHHHcCCcccccccccccccCCC
Q 024536 228 ASYARFLWDAGEEEDDDDGDDQETCASQ 255 (266)
Q Consensus 228 ~~lA~ll~~~G~~~eA~~~~~~~~~~~~ 255 (266)
..+|.++...++.++|++.-+..-...|
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999966444333333
No 63
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.00 E-value=3.8e-09 Score=88.88 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHH
Q 024536 135 ESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~--~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deA 209 (266)
.+..+...+.+.++.++.+ +.+|+++|.++. ..+++++|+.+|++|+.+.|++ +.++.++|.++.. .|++++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHH
Confidence 4566677777776777777 567788888765 5899999999999999997763 4689999988876 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCccccc
Q 024536 210 KSYFDRAVHSAPDDCHVLASYARFLW-------DAGEEEDDD 244 (266)
Q Consensus 210 i~~~ekAL~l~P~da~a~~~lA~ll~-------~~G~~~eA~ 244 (266)
+.+|++|+.++|.+...+.+++.++. ..|++++|.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 99999999999999999999999999 666766554
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.5e-09 Score=106.92 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++|++|+.+|+.||..+|+|..+|+.||-.|. .-.+.++|+..|.|||.+.|+...+++|+|+.+.. .|.|.+|+.+|
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHHHHHHHH
Confidence 79999999999999999999999999998875 45678999999999999999999999999999987 79999999999
Q ss_pred HHHHHhCCCC----------HHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDD----------CHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~d----------a~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
-.||.+.+.. -.+|..|=.++...++.|-+.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 9999998861 24788888888888888855543
No 65
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=9.3e-09 Score=99.91 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+.+++|+..++..++..|+|+.++-..+.++. ..++.++|.+.+++|+.++|+.+-.+.+||.+|.+ .|++.+|+.++
T Consensus 320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~L 397 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRIL 397 (484)
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHHH
Confidence 68899999999999999999999999999886 47999999999999999999999999999999987 79999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
++.+..+|+|+..|..||.+|-.+|+-.+|.
T Consensus 398 ~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 398 NRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 9999999999999999999999999988776
No 66
>PLN02789 farnesyltranstransferase
Probab=98.95 E-value=1.3e-08 Score=95.60 Aligned_cols=102 Identities=7% Similarity=0.002 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD--FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd--~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
..+++|+.++.++++.+|++..+|++.+.++. ..++ ++++..+++++|+++|.|..+|.+.++++.. .+++++|+.
T Consensus 86 ~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~ 163 (320)
T PLN02789 86 ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELE 163 (320)
T ss_pred hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHH
Confidence 36799999999999999999999999998775 4555 3788999999999999999999999999876 689999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDA 237 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~ 237 (266)
+++++|+++|.|..+|+..+.++...
T Consensus 164 ~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 164 YCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999888776
No 67
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.95 E-value=8.6e-09 Score=89.27 Aligned_cols=97 Identities=21% Similarity=0.172 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEI---------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH--- 203 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~---------~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~--- 203 (266)
++.|.+.|+.++..||.++++++++|.+|.+. ..-+++|+.-|++||.++|+...+++++|.++..+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999887542 124688999999999999999999999999886421
Q ss_pred -------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 204 -------KDAPRAKSYFDRAVHSAPDDCHVLASYAR 232 (266)
Q Consensus 204 -------gd~deAi~~~ekAL~l~P~da~a~~~lA~ 232 (266)
.-|++|..||++|+..+|++..++..|-.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 23899999999999999999888766654
No 68
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.92 E-value=3.4e-09 Score=79.46 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~--~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
++++.|+.+|+++++.+|. +...++++|.+++ ..|++++|..++++ +..+|.+...++.+|.+++. .+++++|+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence 5788888888888888885 4567777888877 47888888888888 77888888888888888876 688888888
Q ss_pred HHHHH
Q 024536 212 YFDRA 216 (266)
Q Consensus 212 ~~ekA 216 (266)
+|++|
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88875
No 69
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.91 E-value=2.5e-08 Score=84.38 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=82.4
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536 142 YYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (266)
Q Consensus 142 ~y~rALel~P--~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekA 216 (266)
.+.+.+..++ ..+.+++++|..+. ..|++++|..+|++|+.+.|+. +.++.++|.++.. .|++++|+.+|++|
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 98 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQA 98 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 3344444443 45567888998775 6899999999999999988764 4689999998876 89999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCccc
Q 024536 217 VHSAPDDCHVLASYARFLWDAGEEED 242 (266)
Q Consensus 217 L~l~P~da~a~~~lA~ll~~~G~~~e 242 (266)
+.+.|+++.++..+|.++...++...
T Consensus 99 l~~~p~~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChHh
Confidence 99999999999999999999988433
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=9.4e-09 Score=94.80 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHH-------------------------------------HHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLA-------------------------------------NYAKFLKEIRGDFVKAEE 176 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~-------------------------------------nlA~~L~~~~gd~e~A~~ 176 (266)
+++++|.++++++++.+|++..++. ++|.++. ..|++++|+.
T Consensus 57 g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~ 135 (355)
T cd05804 57 GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEE 135 (355)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHH
Confidence 4677888888888888888776544 2222222 4677888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCccccccccccc
Q 024536 177 YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH----VLASYARFLWDAGEEEDDDDGDDQE 250 (266)
Q Consensus 177 ~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~----a~~~lA~ll~~~G~~~eA~~~~~~~ 250 (266)
.++++++++|+++.++..+|.++++ .|++++|+.++++++...|.++. .+..++.++...|++++|++.-+..
T Consensus 136 ~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 136 AARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888888888888888877766 67888888888888887764332 3446788888888888888765543
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=9.8e-09 Score=94.70 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~----al~nla~ll~~~~gd~deA 209 (266)
+++++|+..|+++++++|+++.++..+|.+++ ..|++++|+.++++++...|.++. .+..++.++.. +|++++|
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A 205 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RGDYEAA 205 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CCCHHHH
Confidence 78999999999999999999999999999887 489999999999999999885543 35578887765 8999999
Q ss_pred HHHHHHHHHhCCC
Q 024536 210 KSYFDRAVHSAPD 222 (266)
Q Consensus 210 i~~~ekAL~l~P~ 222 (266)
+.+|++++...|.
T Consensus 206 ~~~~~~~~~~~~~ 218 (355)
T cd05804 206 LAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHhccccC
Confidence 9999999988883
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.1e-09 Score=102.64 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHHcCCH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP----G---DGNVLSMYGDLIWINHKDA 206 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP----~---da~al~nla~ll~~~~gd~ 206 (266)
+.++-|+++|.+|+.+.|.+|.++..+|.+.+ ..+.|.+|..+|+.++..-+ . ....+.|+|.++.. .+.+
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheee-hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhH
Confidence 67788888888888888888888888887766 35778888888888884222 1 23447788887765 6789
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 207 PRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
++|+.+|++||.+.|.++.++..+|.++..+|+++.|+++
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 9999999999999999999999999999999999998864
No 73
>PRK11906 transcriptional regulator; Provisional
Probab=98.87 E-value=2.6e-08 Score=96.91 Aligned_cols=110 Identities=7% Similarity=0.044 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
.+..+|.++.++|++++|.|+.++..+|.++. ..++++.|...|++|+.++|+.+.+|+.+|+++.. .|+.++|++++
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 57789999999999999999999999998776 46889999999999999999999999999988765 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHcCCcccccc
Q 024536 214 DRAVHSAPDDCHVLASYARF-LWDAGEEEDDDD 245 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~l-l~~~G~~~eA~~ 245 (266)
++|++++|.-..+-.---++ .+.-...++|+.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIK 428 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCchhhhHH
Confidence 99999999866543322233 445566777773
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.87 E-value=6.4e-09 Score=74.19 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=54.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYAR 232 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ 232 (266)
..|++++|+.+|++++..+|++..++..+|.++.. .|++++|+.++++++..+|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 36888999999999999999999999999988877 788999999999999999988877766654
No 75
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.86 E-value=1.8e-08 Score=104.92 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++++.|+..|+++++.+|+++.+...+..++. ..|++++|+.++++++.-+|.....+..+|.++.. +|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 67899999999999999999654446665554 46999999999999994444455555555767755 79999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ 249 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~ 249 (266)
+++++.+|+++.++..++.++.++++.++|++.-+.
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999965433
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.86 E-value=2e-08 Score=103.06 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+..+.++|+++|.++.+|+.||.++. .+||.++|..++-.|-.++|.|.+.|..++....+ +|.+.+|+-||
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHH
Confidence 68999999999999999999999999999874 68999999999999999999999999999987755 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ 249 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~ 249 (266)
.|||.++|.+-......+.+|.+.|+...|.+-..+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 999999999999999999999999999988854433
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.86 E-value=6.9e-08 Score=88.34 Aligned_cols=92 Identities=15% Similarity=0.231 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d 207 (266)
+++++|+..|++.++..|++ +.+++.+|.+++ ..|++++|..+|++++...|++ +++++.+|.++.. .|+++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~~ 234 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDTA 234 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCHH
Confidence 68999999999999999998 579999999887 5899999999999999998885 6888888988866 79999
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 024536 208 RAKSYFDRAVHSAPDDCHVL 227 (266)
Q Consensus 208 eAi~~~ekAL~l~P~da~a~ 227 (266)
+|+.+|+++++..|+...+.
T Consensus 235 ~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999987654
No 78
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.84 E-value=2.2e-08 Score=96.03 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALV----LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG--NVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~a----l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da--~al~nla~ll~~~~gd~d 207 (266)
+++++|++.++++++..|++... +..+.. + ..++.+++++.++++++.+|+|+ ..+..||+++++ .|+++
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~-l--~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~~~ 352 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR-L--KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGEFI 352 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhHHHHHhhh-c--CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cccHH
Confidence 68999999999999999999853 222222 1 24788999999999999999999 888899999977 89999
Q ss_pred HHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 208 RAKSYFD--RAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 208 eAi~~~e--kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+|.++|+ ++++.+|++.. +..+|.++++.|+.++|.++
T Consensus 353 ~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 9999999 68888897765 55999999999999999864
No 79
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.84 E-value=6.8e-09 Score=73.77 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG 189 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da 189 (266)
+++++|+.+|+++++.+|+++.+|+.+|.++. .+|++++|+.+|+++++++|++|
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 68999999999999999999999999999987 68999999999999999999986
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.1e-08 Score=98.32 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++|..|+.+|.+||..+|+++.++.|.|.++. ..+.+..|++.++++|+++|+...+|..-|.++.. ..+|++|+..|
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 78999999999999999999999999998775 57999999999999999999999999999988876 57899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDD 243 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA 243 (266)
+++++++|++.++...+..++..+......
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~a~~~~~~~ 479 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVEAQRGDETP 479 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHhhcCCCH
Confidence 999999999999988888877765333333
No 81
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.83 E-value=1.7e-08 Score=97.96 Aligned_cols=70 Identities=14% Similarity=0.022 Sum_probs=64.9
Q ss_pred HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536 149 AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWINHKDAPRAKSYFDRAVHSA 220 (266)
Q Consensus 149 l~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a---l~nla~ll~~~~gd~deAi~~~ekAL~l~ 220 (266)
.+|+++.+|+|+|.+|+ ..|+|++|+.+|++||+++|+++++ |+|+|.+|.. .|++++|+.+|++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 58999999999999987 5899999999999999999999965 9999998876 899999999999999983
No 82
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.82 E-value=2.9e-08 Score=71.77 Aligned_cols=64 Identities=23% Similarity=0.228 Sum_probs=57.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYA 231 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA 231 (266)
..+++++|.+++++++.++|+++.++..+|.+++. .|++++|+..|+++++..|+++.+....+
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 57999999999999999999999999999998877 78999999999999999999988765544
No 83
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.1e-07 Score=87.81 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~--gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
+++..|...|++|+++.|+|++++..||.+|+... .+-.+|...+++||++||+|..+++.||..+++ +|||.+|+.
T Consensus 170 ~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~~~~A~~ 248 (287)
T COG4235 170 GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGDYAEAAA 248 (287)
T ss_pred cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHH
Confidence 68899999999999999999999999999887433 355899999999999999999999999998877 899999999
Q ss_pred HHHHHHHhCCCCHHHH
Q 024536 212 YFDRAVHSAPDDCHVL 227 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~ 227 (266)
.+++.++..|.+....
T Consensus 249 ~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 249 AWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHhcCCCCCchH
Confidence 9999999999765543
No 84
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.78 E-value=9.6e-08 Score=92.10 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++++.|+.+|++..+.+|+ +...+|.++. ..++-.+|.+.+.++|..+|.++..+...+.++.. +++++.|+.+.
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA 257 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA 257 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 6799999999999999986 4445676665 46788999999999999999999999999998876 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
++|+.+.|++...|+.||.+|...|+++.|+
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999998
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.76 E-value=1.9e-08 Score=72.11 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKP 186 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP 186 (266)
+++++|+.+|.+||+++|+++.+|+++|.++. ..+ ++++|+++|++||+++|
T Consensus 17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 68999999999999999999999999999886 578 79999999999999998
No 86
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.76 E-value=6.9e-09 Score=77.74 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 168 RGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~--da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+++++.|+.+|+++++.+|. +..+++++|.++++ .|++++|+.++++ +..+|.+...+..+|.++.++|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999999995 56677788999987 8999999999999 99999999999999999999999999986
Q ss_pred c
Q 024536 246 G 246 (266)
Q Consensus 246 ~ 246 (266)
+
T Consensus 80 ~ 80 (84)
T PF12895_consen 80 A 80 (84)
T ss_dssp H
T ss_pred H
Confidence 5
No 87
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.2e-08 Score=91.38 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=75.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
..++|++|+..|.+||+++|.|+-.|.|.|.+|.+ .|.++.|++-++.||.+||.+..+|..||.+|..+|++++|++-
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 36899999999999999999999999999999977 68999999999999999999999999999999999999999953
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=2.8e-08 Score=70.85 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ 197 (266)
+++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|..++++++..+|+++.++..++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 68999999999999999999999999999887 5899999999999999999999888876654
No 89
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.74 E-value=1.4e-07 Score=90.42 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-~al~nla~ll~~~~gd~deAi~~ 212 (266)
++++.|++.+.++.+..|+....+...|.+.. .+|++++|..+++++.+..|++. .+...++.++.. .+++++|...
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al~~ 175 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAARHG 175 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHHHH
Confidence 79999999999999999998888887788765 58999999999999999999986 466667877766 8999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+++.++..|+++.++..++.++...|++++|++.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~ 209 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDI 209 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999988853
No 90
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=3.4e-07 Score=75.45 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d 207 (266)
++..++.+.+++.++-+|+. ..+.+.+|.+++ ..|++++|...|++++...|++ +.+...++.++.. .++++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d 102 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYD 102 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHH
Confidence 57788888999999999999 466777888876 5899999999999999988776 3577788998877 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+|+..+++ +.-.+-.+.++...|.++...|+.++|.+.
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999977 444555677888999999999999999854
No 91
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.66 E-value=2.6e-07 Score=88.54 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++.++|++.++++++ .|.++.+...++.+. .++.++|.+.+++.++..|+|+..+..+|.++.. .+++++|..+|
T Consensus 277 g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~---~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A~~~l 351 (398)
T PRK10747 277 DDHDTAQQIILDGLK-RQYDERLVLLIPRLK---TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEASLAF 351 (398)
T ss_pred CCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc---CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 788999999999999 555777666666542 4899999999999999999999999999999977 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+++++++|++.. +..++.++...|+.++|.+.
T Consensus 352 e~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 352 RAALKQRPDAYD-YAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred HHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 999999998755 45799999999999999854
No 92
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.1e-07 Score=89.02 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL 198 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~---------------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~l 198 (266)
++|..|...|++|+..-... ..+|+|+|.++. ..++|.+|+.++.++|+++|+|.-+++..|.+
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A 300 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQA 300 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 78999999999998875411 246788887765 57999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+.. .++|+.|+..|++|++++|+|..+...+..+.....++.+.+
T Consensus 301 ~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 301 LLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 977 799999999999999999999999988888777666655554
No 93
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.65 E-value=2.8e-07 Score=75.02 Aligned_cols=87 Identities=17% Similarity=0.108 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 024536 156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD---DCHVLAS 229 (266)
Q Consensus 156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~---da~a~~~ 229 (266)
+++++|.++. ..|+.++|+.+|++|++...+. ..++..+|..+.. .|++++|+.++++++...|+ +..+...
T Consensus 3 ~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4455555443 3555556666666665554333 2345555555543 45566666666655555555 4445555
Q ss_pred HHHHHHHcCCccccc
Q 024536 230 YARFLWDAGEEEDDD 244 (266)
Q Consensus 230 lA~ll~~~G~~~eA~ 244 (266)
++.++...|+.++|+
T Consensus 81 ~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 81 LALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHHCCCHHHHH
Confidence 555555555555555
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.64 E-value=2.9e-07 Score=93.52 Aligned_cols=126 Identities=14% Similarity=0.163 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--H
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS--Y 212 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~--~ 212 (266)
..++|.-++.+|-.++|-.+..|+..|..+. ++|.+++|...|..|+.+||++..++..+|.++.+ .|+..-|.. +
T Consensus 665 ~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~~~ 742 (799)
T KOG4162|consen 665 NDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKRSL 742 (799)
T ss_pred CchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHHHH
Confidence 4578888999999999999999999998764 78999999999999999999999999999999877 677666666 9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc------ccccccCCCCCCCCCC
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG------DDQETCASQPNILPPL 262 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~------~~~~~~~~~~~~~~~~ 262 (266)
+..|++++|.++.+|+++|.++...|+.++|.+- =|...-+-|....|++
T Consensus 743 L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~ip~~ 798 (799)
T KOG4162|consen 743 LSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNIPPV 798 (799)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccccccCCC
Confidence 9999999999999999999999999999999852 2444444444445553
No 95
>PRK15331 chaperone protein SicA; Provisional
Probab=98.63 E-value=3.9e-07 Score=78.02 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+.+|+-....+|.++..|..||.++. .+++|++|+.+|..|..++++||...+..|.++.. .++.+.|+.+|
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~~~f 128 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKARQCF 128 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHHHHH
Confidence 68999999999999999999999999998775 68999999999999999999999999999998876 78999999999
Q ss_pred HHHHHhCCCCHHHHH
Q 024536 214 DRAVHSAPDDCHVLA 228 (266)
Q Consensus 214 ekAL~l~P~da~a~~ 228 (266)
+.|+. .|.+..+..
T Consensus 129 ~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 129 ELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHh-CcchHHHHH
Confidence 99999 687766543
No 96
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1.5e-07 Score=88.53 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHHcCCHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--G-DGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP--~-da~al~nla~ll~~~~gd~deAi 210 (266)
++.+-|..+|++.|+..-.+++++.|+|.+.. ..++++-++..|+||+...- + -+++|+|+|.+... .||+.-|.
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA~ 415 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNLAK 415 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHHHH
Confidence 57788999999999999999999999987654 46889999999999998753 3 35789999988766 79999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc----cccccccCCCCCC
Q 024536 211 SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD----GDDQETCASQPNI 258 (266)
Q Consensus 211 ~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~----~~~~~~~~~~~~~ 258 (266)
.+|+-|+..||++.+++.++|.+-.+.|+.++|.. -.+.+-+++-+++
T Consensus 416 rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 416 RCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTT 467 (478)
T ss_pred HHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccc
Confidence 99999999999999999999999999999999983 2455555554443
No 97
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.61 E-value=2.7e-07 Score=66.56 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla 196 (266)
+++++|+++++++++++|+++.+|..+|.++. ..|++++|.+.|+++++..|+++.+....+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 78999999999999999999999999999887 589999999999999999999998876544
No 98
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.60 E-value=4.3e-07 Score=94.85 Aligned_cols=111 Identities=15% Similarity=-0.012 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|+++|+++++.+|+++.++..++.++. ..++.++|++.+++++..+|.+... ..++.++.. .++..+|+..|
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHHHHHHHH
Confidence 67888888888888888888888877766554 4688888888888888888886554 334444433 46666688888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
+++++++|++..++..+..++...|-..-|.+.-
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 8888888888888888888888888877777543
No 99
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.7e-07 Score=89.74 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|...|++||.-+..-..+++|.|..+. ..|++++|+.||-+.-.+--+++++++.++.+|. ...+...|+++|
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence 68999999999999999999999999997664 6899999999999888888889999999999885 478999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCCCC
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNI 258 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~~~ 258 (266)
-+|..+-|+++.++..||.+|-+-|+...|-+---+.-.-+|-|+
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni 626 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI 626 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence 999999999999999999999999998888865433333444443
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3e-07 Score=90.37 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
.++++.|+.+|-.||.++|.|..++.|....+. ..++|++|+.-..+.++++|+.+..|...|..+.- .|+|++|+..
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHHHHH
Confidence 479999999999999999999999999876654 57999999999999999999999999999998866 7999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH
Q 024536 213 FDRAVHSAPDDCHVLASYARFL 234 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll 234 (266)
|.+.|+.+|++......++.++
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999998887
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.58 E-value=4.2e-07 Score=83.21 Aligned_cols=94 Identities=18% Similarity=0.118 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 024536 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHV 226 (266)
Q Consensus 153 ~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a 226 (266)
+...+++.|..+....++|++|...|++.|...|++ +.+++.+|.+++. .|++++|+.+|++++...|++ +.+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 345555555544334689999999999999999998 5899999999987 899999999999999999985 668
Q ss_pred HHHHHHHHHHcCCcccccccc
Q 024536 227 LASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 227 ~~~lA~ll~~~G~~~eA~~~~ 247 (266)
+..+|.++...|+.++|.+.-
T Consensus 220 l~klg~~~~~~g~~~~A~~~~ 240 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVY 240 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 889999999999999999653
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=1.6e-07 Score=95.06 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
.++|++|.+++++.++++|-....|+++|.+.. +.++++.|..+|.+++.++|++.++|+|++..+.. .++-.+|-..
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHHH
Confidence 378999999999999999999999999998765 57889999999999999999999999999988876 6889999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+++|++-+=.+..+|-||-.+.-+.|++++|++
T Consensus 576 l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 999999998888999999999999999999983
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.53 E-value=7.2e-07 Score=88.82 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 135 ESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 135 ~~eeA~~~y~rALel--~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
+..+|.+..++++.+ +|.++.+|..+|.... ..|++++|..+|++|++++| +..+|..+|.++.. .|++++|+.+
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~ 475 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 456788888887775 8888888988887654 57999999999999999999 58999999998865 8999999999
Q ss_pred HHHHHHhCCCCHH
Q 024536 213 FDRAVHSAPDDCH 225 (266)
Q Consensus 213 ~ekAL~l~P~da~ 225 (266)
|++|+.++|.++.
T Consensus 476 ~~~A~~L~P~~pt 488 (517)
T PRK10153 476 YSTAFNLRPGENT 488 (517)
T ss_pred HHHHHhcCCCCch
Confidence 9999999998875
No 104
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.53 E-value=1.3e-06 Score=83.58 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM-YGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~n-la~ll~~~~gd~deAi~~ 212 (266)
|++++|++...++-+..+ ++.+++.++-......|++++|..+|++|.+.+|++..+... .+.++.. .|++++|+.+
T Consensus 98 Gd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-RNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 688999977777665433 355555554333236899999999999999999998654433 3555544 8999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++++++.+|+++.++..++.+|...|++++|++
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999983
No 105
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.53 E-value=9.4e-08 Score=98.91 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
..+.+++|+++|.++|+.+|.|..+-+-+|.+|. .+|++.+|...|.++.+.--+++.+|.|+|.+|.. +|+|-.|++
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA-~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e-~~qy~~AIq 701 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLA-EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE-QGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhh-hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH-HHHHHHHHH
Confidence 3478999999999999999999999999999886 58999999999999999998999999999999987 799999999
Q ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536 212 YFDRAVHSAP--DDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 212 ~~ekAL~l~P--~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~ 256 (266)
.|+.++...= ++..++..||.++++.+++.+|.+.-...-|+.|.
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 9999998753 68899999999999999999998655544454444
No 106
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.51 E-value=1.5e-07 Score=69.09 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK----PG---DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 151 P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld----P~---da~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
|+-+.++.++|.++. ..|++++|+.+|++|+.+. ++ -+.++.++|.++.. .|++++|+.+|++|+++
T Consensus 2 ~~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 445678999999887 6899999999999999752 22 25678899998876 89999999999999986
No 107
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.50 E-value=4.3e-07 Score=90.91 Aligned_cols=109 Identities=9% Similarity=-0.027 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++.++|..+.+.++..++.....|..+|.+.. ..++|++|++||+.|+.++|+|-.+|..++.+-.+ .+|++-....-
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHHHHH
Confidence 45555555555555555555555555554433 34555555555555555555555555555543333 45555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.+.+++.|..-..|..+|..+...|++..|.
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=6.4e-07 Score=93.82 Aligned_cols=107 Identities=11% Similarity=0.056 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------------HHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-------------------NVLSM 194 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-------------------~al~n 194 (266)
+++++|++.++.+++.+|+...+|+.+|.+++ ..+++.+|... +++.+-+.+. .+++.
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~ 121 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT 121 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence 78999999999999999999999999998554 45656555444 5666555555 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 195 YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 195 la~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+|.+|-. .|+.++|.+.|+++|+++|+|+.++++||.+|... +.+.|++
T Consensus 122 LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 122 LAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 9988755 79999999999999999999999999999999999 9998884
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.47 E-value=8e-07 Score=90.37 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEE--YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~--~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
+.+++|.+.|..|+.+||+++.++..+|.++. ..|+..-|+. +...|+++||.++++|+.+|.++.. +||.++|..
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd~~~Aae 775 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGDSKQAAE 775 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccchHHHHH
Confidence 68899999999999999999999999999886 4677666666 9999999999999999999998855 899999999
Q ss_pred HHHHHHHhCCCCHH
Q 024536 212 YFDRAVHSAPDDCH 225 (266)
Q Consensus 212 ~~ekAL~l~P~da~ 225 (266)
+|+.|+.+++.+|.
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999999998764
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=2.6e-06 Score=77.63 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+.+++|+++|...|+-||.|..++-.--.++. .+|..-+|++....-++.-++|+++|..++.+|.. .++|++|.-+|
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHHHHHHH
Confidence 45566666666666666666554432111222 34544555555555555555555555555555544 45555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGE 239 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~ 239 (266)
++.+-++|-++..+..||.+++-+|.
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 55555555555555555555554443
No 111
>PRK15331 chaperone protein SicA; Provisional
Probab=98.44 E-value=6.2e-07 Score=76.77 Aligned_cols=94 Identities=10% Similarity=-0.074 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024536 150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLAS 229 (266)
Q Consensus 150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~ 229 (266)
.++.-+..+.+|.-++ ..|++++|+.+|+-....+|.+++.|..||.++. .+++|++|+..|-.|..++++|+...+.
T Consensus 33 s~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 3344456677777666 5899999999999999999999999999998875 4899999999999999999999999999
Q ss_pred HHHHHHHcCCcccccc
Q 024536 230 YARFLWDAGEEEDDDD 245 (266)
Q Consensus 230 lA~ll~~~G~~~eA~~ 245 (266)
.|..++..++.+.|.+
T Consensus 111 agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 111 TGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHHHHHhCCHHHHHH
Confidence 9999999999999984
No 112
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.44 E-value=7.4e-07 Score=88.42 Aligned_cols=110 Identities=24% Similarity=0.375 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--------PGDGNVLSMYGD 197 (266)
Q Consensus 134 ~~~eeA~~~y~rALel--------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--------P~da~al~nla~ 197 (266)
+.+.+|+.+|++|+.+ +|.-+.++.|||.+++ ..|++++|+.++++|+.+- |.-+..+.+++.
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 8999999999999987 4555689999999886 6899999999999999863 333456777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCcccccc
Q 024536 198 LIWINHKDAPRAKSYFDRAVHSA-----PDD---CHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 198 ll~~~~gd~deAi~~~ekAL~l~-----P~d---a~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++. .++++++|+.++++++++- +++ +....+||.+|..+|++.+|++
T Consensus 334 ~~~-~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 334 ILQ-SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred HHH-HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 664 4899999999999999864 233 4578899999999999999995
No 113
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.5e-07 Score=88.55 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+.+.+|..+|-||..+||....+|..+|..+. .+++.++|..+|-+|-++=|........+|.-+.. .+.++-|..+|
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHHHHHHHH
Confidence 67899999999999999999999999999875 68999999999999999999988888888876654 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
.+|+.+.|+|+-+++.+|.+.+..+.+.+|+..
T Consensus 404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred HHHHhcCCCcchhhhhhhheeehHhhhHHHHHH
Confidence 999999999999999999999999999999853
No 114
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=5.2e-06 Score=67.58 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 024536 131 DSGKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHK 204 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~---da~al~nla~ll~~~~g 204 (266)
++.|+.++|+.+|++|++..... ..++.++|..+. ..|++++|+..+++++...|+ +..+...++.+++. .|
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g 89 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG 89 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC
Confidence 45578999999999999987665 468889998886 689999999999999999898 78888889988877 79
Q ss_pred CHHHHHHHHHHHHHh
Q 024536 205 DAPRAKSYFDRAVHS 219 (266)
Q Consensus 205 d~deAi~~~ekAL~l 219 (266)
++++|+.++-.++.-
T Consensus 90 r~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 90 RPKEALEWLLEALAE 104 (120)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998863
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=5.7e-06 Score=75.39 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--DAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g--d~deAi~ 211 (266)
+..-+|++.+.+-++..+.|.++|..++.++. ..++|++|.-||++.+-+.|.++..+..||.+++-..| +++-|..
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34459999999999999999999999999876 58999999999999999999999999999999876433 6788999
Q ss_pred HHHHHHHhCCCCHHHHHHH
Q 024536 212 YFDRAVHSAPDDCHVLASY 230 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~l 230 (266)
||.+|++++|.+..+++.+
T Consensus 213 yy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHhChHhHHHHHHH
Confidence 9999999999887776543
No 116
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.36 E-value=1.2e-06 Score=90.98 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---------- 201 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~--gd~e~A~~~~erAL~ldP~da~al~nla~ll~~---------- 201 (266)
+..+.|+..|.+|++++|.++.++..||.+..... ..+..|...+.+|...+|+||.++..++.-++.
T Consensus 213 ~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 45566677777777777766666666665432111 224555555566666666665555555543332
Q ss_pred --------------------------HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCccccccccc
Q 024536 202 --------------------------NHKDAPRAKSYFDRAVHSAPDD-CHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 202 --------------------------~~gd~deAi~~~ekAL~l~P~d-a~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
.+|||++|..||.+++..+|++ ...+..+|..+...|+.+.++.-+|
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 2566666666666666666665 4445566666666666666654333
No 117
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5e-06 Score=80.21 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
--.++|.++|+++|+++|....+.+.+|.++. ..|.+++++.+++++|..-|++ ..+..+|.++.. +..+++|..+|
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A-~Ne~Q~am~~y 494 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRA-QNEPQKAMEYY 494 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHH-hhhHHHHHHHH
Confidence 34699999999999999999999999998765 6899999999999999999976 567889998866 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
.+|+.+||++-..+..+-. +-+..+..+|.++
T Consensus 495 ~~ALr~dP~~~~sl~Gl~~-lEK~~~~~DATdE 526 (564)
T KOG1174|consen 495 YKALRQDPKSKRTLRGLRL-LEKSDDESDATDE 526 (564)
T ss_pred HHHHhcCccchHHHHHHHH-HHhccCCCCcccc
Confidence 9999999999988877754 4555556677644
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=1.2e-06 Score=88.69 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------------------HcCCHHHHHHHHHHHHHhCC
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---------------------------IRGDFVKAEEYCGRAILAKP 186 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---------------------------~~gd~e~A~~~~erAL~ldP 186 (266)
++..+|+...++-++ .|.++.+|-.+|+++.. ..++|++|.++++++++++|
T Consensus 438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 566778888888888 77778888777765311 13789999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 187 GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 187 ~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
-....|+++|.+.++ .+++..|..+|.+++.++|++.++|++++.+|...++..+|-
T Consensus 517 lq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred cchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 999999999988887 678999999999999999999999999999999999988887
No 119
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.1e-06 Score=84.56 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVL------------ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----NVLSMYGD 197 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al------------~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----~al~nla~ 197 (266)
.+.++|+.+|+++|.++|++..+- .+-|.-++ ..|.|.+|.++|..||.++|++. ..|.|.+.
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 688999999999999999986433 33344344 47899999999999999999864 56788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+... .|+..+|+.-++.|+.++|....++..-|.++...+++++|.+-
T Consensus 296 v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 296 VNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred hhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 78999999999999999999999999999999999999999953
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.33 E-value=2.6e-06 Score=88.75 Aligned_cols=124 Identities=12% Similarity=0.059 Sum_probs=107.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------
Q 024536 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---------- 201 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~---------- 201 (266)
++++.+.|..+|-++++++|..+.++..+|.++.... |...|..||++|.++||.+++++...+..+.+
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 3466899999999999999999999999999887655 89999999999999999999888766654421
Q ss_pred -------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536 202 -------------------------NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 202 -------------------------~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~ 256 (266)
..+++-.|+..|+-|++.+|.|...|..+|.+|...|++.-|+++++..+.+-|.
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 0357888999999999999999999999999999999999999998887777664
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=4.2e-06 Score=68.90 Aligned_cols=81 Identities=15% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi 210 (266)
+++++|...|++++...|+. +.+.+.+|.++. ..+++++|+..++. +.-.+-.+.++...|.++.. +|++++|+
T Consensus 62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~~A~ 138 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYDEAR 138 (145)
T ss_pred CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHHHHH
Confidence 68999999999999998776 357888998886 58999999999966 45566678888899999977 89999999
Q ss_pred HHHHHHH
Q 024536 211 SYFDRAV 217 (266)
Q Consensus 211 ~~~ekAL 217 (266)
..|++||
T Consensus 139 ~~y~~Al 145 (145)
T PF09976_consen 139 AAYQKAL 145 (145)
T ss_pred HHHHHhC
Confidence 9999985
No 122
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=4.6e-07 Score=85.25 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|.++|+++++++|.|.++....|.-++ ..++.+-|+.||+|.|..--.+++.+.|+|.+++- .+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcchhhhHHHH
Confidence 67888888888888888888888777765443 35778888888888888888888888888887765 67888888888
Q ss_pred HHHHHhCCC---CHHHHHHHHHHHHHcCCccccc
Q 024536 214 DRAVHSAPD---DCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 214 ekAL~l~P~---da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+||+...-+ -+++|++++.+.-..|++--|.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHH
Confidence 888887642 2457888888888888876665
No 123
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.31 E-value=1.2e-06 Score=85.22 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=58.1
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCccccccc
Q 024536 184 AKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHV---LASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 184 ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a---~~~lA~ll~~~G~~~eA~~~ 246 (266)
.+|+++.+|+|+|.+|+. .|+|++|+.+|++||+++|+++.+ |+++|.+|..+|+.++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~ 134 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADC 134 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 589999999999999987 899999999999999999999865 99999999999999999954
No 124
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.29 E-value=3.1e-06 Score=84.06 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--------PGDGNVLSMYGD 197 (266)
Q Consensus 134 ~~~eeA~~~y~rALel--------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--------P~da~al~nla~ 197 (266)
+++++|+..|++|+++ .|.-...+.++|.++. ..+++.+|..+|++|+.+- |.-+.++.++|.
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 8999999999999999 7777777788998776 6899999999999999853 444577999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCcccccc
Q 024536 198 LIWINHKDAPRAKSYFDRAVHSAP--------DDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 198 ll~~~~gd~deAi~~~ekAL~l~P--------~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+|.. +|++++|..|+++|+++-- +-+..+.+++.++..++++++|+.
T Consensus 292 ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 292 LYYK-QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHhc-cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 8876 8999999999999998742 233457888999999999999983
No 125
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.27 E-value=2.7e-06 Score=80.59 Aligned_cols=98 Identities=21% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+.|++|+.||-++|.++|.|+..+.|.|.+|. ....++.|+.-+..||.+|-....+|...+.+... .|...+|..-|
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~EAKkD~ 188 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNMEAKKDC 188 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHHHHHHhH
Confidence 57899999999999999999999999998876 46889999999999999999999999988887766 68899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q 024536 214 DRAVHSAPDDCHVLASYARF 233 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~l 233 (266)
+++|++.|++-+..-.++.+
T Consensus 189 E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 189 ETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhhCcccHHHHHHHHHh
Confidence 99999999988876666543
No 126
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=3.6e-06 Score=82.10 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--------
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD-------- 205 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd-------- 205 (266)
++.++|+.+|.+.-.+--+++.+++.+|.++ +...+..+|+++|.+|..+-|+||.++..+|.+|-+ .||
T Consensus 538 ~~ldeald~f~klh~il~nn~evl~qianiy-e~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdksqafq~~ 615 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILLNNAEVLVQIANIY-ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKSQAFQCH 615 (840)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchhhhhhhh
Confidence 8899999999998888889999999999876 467889999999999999999999999999987632 443
Q ss_pred --------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCCCC
Q 024536 206 --------------------------APRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNI 258 (266)
Q Consensus 206 --------------------------~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~~~ 258 (266)
.++|+.||++|.-+.|+...+....|.++.+.|+++.|.+.-.+.+.-+|.++
T Consensus 616 ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 616 YDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred hhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 58999999999999999999999999999999999999987666666777665
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=1.1e-05 Score=84.58 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL--------------------AKPGDGNVLS 193 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~--------------------ldP~da~al~ 193 (266)
+++++|.+.|+++|+++|+|+.+++|||.++.+ . ++++|+.++.+|+. .+|++.+.+.
T Consensus 130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~ 207 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFL 207 (906)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHH
Confidence 789999999999999999999999999998864 4 88899888888876 4555544422
Q ss_pred HHHH-------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 194 MYGD-------------------LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 194 nla~-------------------ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
.+-. -++...+++++++.+++++|+++|.|..++..++.+|..
T Consensus 208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 208 RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2111 112335689999999999999999999999999988874
No 128
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.24 E-value=2.6e-06 Score=56.68 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYA 231 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA 231 (266)
.++..+|.++.. .|++++|+.+|+++++.+|+|+.++..+|
T Consensus 2 ~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 345555555544 56666666666666666666666655554
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=2.2e-05 Score=76.69 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++.++|++.|++++.++|+.+.++.+||.+|. ..|++++|+.++++.+..+|+|+..|..+|..+.. +|+..+|...+
T Consensus 354 nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~a~~A~ 431 (484)
T COG4783 354 NKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAEALLAR 431 (484)
T ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHHHHHHH
Confidence 68899999999999999999999999999987 58999999999999999999999999999998865 66666666665
Q ss_pred HHHHHhCCCCHHH
Q 024536 214 DRAVHSAPDDCHV 226 (266)
Q Consensus 214 ekAL~l~P~da~a 226 (266)
..+..++-+.-.+
T Consensus 432 AE~~~~~G~~~~A 444 (484)
T COG4783 432 AEGYALAGRLEQA 444 (484)
T ss_pred HHHHHhCCCHHHH
Confidence 5555555443333
No 130
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.22 E-value=1.3e-06 Score=55.59 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=11.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536 179 GRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 179 erAL~ldP~da~al~nla~ll~~~~gd~deA 209 (266)
++||+++|+|+.+|++||.++.. .|++++|
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~-~g~~~~A 32 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLN-QGDYEEA 32 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHH-CcCHHhh
Confidence 34444444444444444433332 3344433
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.20 E-value=2.2e-05 Score=70.90 Aligned_cols=111 Identities=18% Similarity=0.088 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH-----
Q 024536 134 KESESMDVYYQEMIKAYPEDALVL---ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWIN----- 202 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al---~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~----- 202 (266)
+++++|++.|++++...|..+.+. +++|.+++ ..+++++|..+|++.|+..|+++ .+++.+|.+....
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~ 124 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL 124 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence 789999999999999999998655 88888877 58999999999999999999886 5677777553221
Q ss_pred ---------cCC---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCcccccc
Q 024536 203 ---------HKD---APRAKSYFDRAVHSAPDDCHV-----------------LASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 203 ---------~gd---~deAi~~~ekAL~l~P~da~a-----------------~~~lA~ll~~~G~~~eA~~ 245 (266)
..| ..+|+..|++.|+.-|+...+ -...|.+|++.|.+..|+.
T Consensus 125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 012 357889999999999997653 2356778888888888773
No 132
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.20 E-value=6.3e-06 Score=82.78 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++|.+.+++.+..|+-.|.+++.+...|..|. ..|+-++|..+.+.++..|+.....|..+|.++. ..++|++|+.+|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHH
Confidence 68899999999999999999999999998886 5799999999999999999999999999997664 478999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+.|+.++|+|-.++..++.+..++++++-..+
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999877663
No 133
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.19 E-value=1.5e-06 Score=55.28 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+|+|||+++|+++.++++||.+|...|+.++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999974
No 134
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=2.3e-05 Score=69.71 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~-----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~de 208 (266)
++|++|..-|+.||++-|.-+ .+|.|.|.++. ..+.++.|+.-+-+||+++|.+-.++...|.+|.+ ...|++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek~ee 186 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEKYEE 186 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhhHHH
Confidence 489999999999999999865 56677777665 46889999999999999999999999988988766 588999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536 209 AKSYFDRAVHSAPDDCHVLASYARFLWDA 237 (266)
Q Consensus 209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~~ 237 (266)
|+.-|++.++++|..-++.-..+.+--..
T Consensus 187 aleDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 187 ALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 99999999999999888776666544333
No 135
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=2.2e-05 Score=73.87 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDAL-----VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~-----al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~de 208 (266)
.++++|+..-++.+.+.|+.-. .+--||..+. ...+.++|...+++|+..||.+..+=..+|.+... +|+|++
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~ 232 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQK 232 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHH
Confidence 6788888888888888877642 2233444332 35788899999999999999999888888988866 889999
Q ss_pred HHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCccccc
Q 024536 209 AKSYFDRAVHSAPDD-CHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 209 Ai~~~ekAL~l~P~d-a~a~~~lA~ll~~~G~~~eA~ 244 (266)
|++.++++++.||+. +++...|..+|.+.|+.++.+
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999976 457778888888889888876
No 136
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1e-05 Score=73.24 Aligned_cols=87 Identities=21% Similarity=0.114 Sum_probs=78.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi 210 (266)
...+.|..|+.+|-+||.++|..+..|.|-|.... ...+++.+..-.++|+.++|+...+++.+|.++.+ ...|++|+
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHH
Confidence 34578999999999999999999999999998766 47899999999999999999999999999998877 56799999
Q ss_pred HHHHHHHHh
Q 024536 211 SYFDRAVHS 219 (266)
Q Consensus 211 ~~~ekAL~l 219 (266)
..+++|..+
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999999554
No 137
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.11 E-value=6.8e-06 Score=54.67 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (266)
Q Consensus 154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ 197 (266)
|.+|..+|.++. ..|++++|+++|+++|+.+|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999876 6899999999999999999999999998874
No 138
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.10 E-value=7.8e-06 Score=75.07 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek 215 (266)
.+.|...|.+|++..+-...+|..+|.+-+...++.+.|...|+++++.-|.+...|..|..++.. .+|.+.|..+|++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lfer 95 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 688999999999777778899999998755445777779999999999999999999999998876 7899999999999
Q ss_pred HHHhCCCCH---HHHHHHHHHHHHcCCcccccccccccccCCC
Q 024536 216 AVHSAPDDC---HVLASYARFLWDAGEEEDDDDGDDQETCASQ 255 (266)
Q Consensus 216 AL~l~P~da---~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~ 255 (266)
++..-|... .+|..+..+-...|+.+...++.....+.+|
T Consensus 96 ~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 96 AISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 999988765 4788888888888887766655544444443
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.06 E-value=1.6e-05 Score=83.03 Aligned_cols=91 Identities=22% Similarity=0.136 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI--NHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~--~~gd~deAi~ 211 (266)
++|++|++..+++|+.+|+|..++.-+|.++....++.++|...|..|.+++|++.-+|-.++.+|.. ..-+++++-.
T Consensus 16 k~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~ 95 (1238)
T KOG1127|consen 16 KEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAK 95 (1238)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHH
Confidence 78999999999999999999999999999998666679999999999999999999999999987744 2357899999
Q ss_pred HHHHHHHhCCCCH
Q 024536 212 YFDRAVHSAPDDC 224 (266)
Q Consensus 212 ~~ekAL~l~P~da 224 (266)
+|++++.+.|++.
T Consensus 96 ~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 96 CYQRAVLILENQS 108 (1238)
T ss_pred HHHHHHHhhhhhh
Confidence 9999999999765
No 140
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.06 E-value=1.7e-05 Score=75.27 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++..|+..|..|++.||++..+++..|.++. .+|+-..|+.-+.++|++.|+..-+....|.++.. +|.+++|+.-|
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~DF 129 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEADF 129 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHHH
Confidence 57888888888889989988888888887765 57888888888888998888888888888888876 78888898889
Q ss_pred HHHHHhCCCCH
Q 024536 214 DRAVHSAPDDC 224 (266)
Q Consensus 214 ekAL~l~P~da 224 (266)
++.|..+|.+-
T Consensus 130 ~~vl~~~~s~~ 140 (504)
T KOG0624|consen 130 DQVLQHEPSNG 140 (504)
T ss_pred HHHHhcCCCcc
Confidence 98888888543
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.05 E-value=3.7e-05 Score=67.18 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc----
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINH---- 203 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~---- 203 (266)
+++.+|+..|++++...|..+ .+++.+|.+++ ..+++++|...|++.+...|+++ .+++..|.+.+...
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 689999999999999999864 68888998887 58999999999999999999976 57888887765432
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCccccc
Q 024536 204 ------KDAPRAKSYFDRAVHSAPDDCHV-----------------LASYARFLWDAGEEEDDD 244 (266)
Q Consensus 204 ------gd~deAi~~~ekAL~l~P~da~a-----------------~~~lA~ll~~~G~~~eA~ 244 (266)
....+|+..|+..+..-|++..+ -...|.+|++.|.+..|+
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 22468999999999999997654 234577888888888777
No 142
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.9e-05 Score=76.25 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------------------------HcCCHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---------------------------------IRGDFVKAEEYCGR 180 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---------------------------------~~gd~e~A~~~~er 180 (266)
|++++|+..|.++.-+||.+...+--||.+|.. ..+++..|+.+-++
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 677899999999999999988888777765531 12356667777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 181 AILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 181 AL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+|..+|.+..++..-|.++.+ .++.++|+-.|+.|+.+.|-+-+.+..+-..|+..+++.||.
T Consensus 326 ~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred HhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 777777777777777766655 566777777777777777777777777777777777777766
No 143
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.05 E-value=1.8e-05 Score=73.44 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR-GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~-gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
++++.|.+.++++-+.+.+.......-|++-.... ..+.+|.-+|+......+.++..++.+|.+... +|++++|+..
T Consensus 145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~~ 223 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEEL 223 (290)
T ss_dssp T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 78899999999999988887666655555443222 358999999999777778899999999988766 8999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+++|+..+|+++.++.+++.+....|+..++.
T Consensus 224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 99999999999999999999999999985544
No 144
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=7.3e-05 Score=68.49 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d 207 (266)
++|..|+..|+.-|...|+.+ .+++.||..++ .+|+++.|...|.+++.-.|++ |++++-+|.++.+ .++.+
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~~~d 232 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LGNTD 232 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hcCHH
Confidence 567888888888888888764 67888888777 5788888888888888877765 4678888887766 67788
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 024536 208 RAKSYFDRAVHSAPDDCHVL 227 (266)
Q Consensus 208 eAi~~~ekAL~l~P~da~a~ 227 (266)
+|...|+++++.=|+...+.
T Consensus 233 ~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 88888888888888776654
No 145
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.03 E-value=6.5e-05 Score=62.88 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----NVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----~al~nla~ll~~~~gd~deA 209 (266)
++.+.|++.|.++|.+.|..+.+|+|.|..+. .+|+.++|+.-+++|+++.-+.. .++...|.+| +.+|+-++|
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly-Rl~g~dd~A 134 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY-RLLGNDDAA 134 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHhCchHHH
Confidence 47899999999999999999999999999886 58999999999999999976543 4566677655 558999999
Q ss_pred HHHHHHHHHhCCCCHH
Q 024536 210 KSYFDRAVHSAPDDCH 225 (266)
Q Consensus 210 i~~~ekAL~l~P~da~ 225 (266)
..-|+.|.++-...+.
T Consensus 135 R~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 135 RADFEAAAQLGSKFAR 150 (175)
T ss_pred HHhHHHHHHhCCHHHH
Confidence 9999988877665443
No 146
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.03 E-value=7.2e-06 Score=77.74 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024536 150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLAS 229 (266)
Q Consensus 150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~ 229 (266)
+|.+..-++.+|.-+. ..+++.+|+..|..||+.||++-.+++..|.+|.. .|+-..|+.-+.+.|++.|+...++..
T Consensus 34 ~~advekhlElGk~ll-a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA-mGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELL-ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA-MGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hcCCccchhhHHHHHhcCccHHHHHHH
Confidence 4566677888888775 57999999999999999999999999999999877 789999999999999999999999999
Q ss_pred HHHHHHHcCCcccccc
Q 024536 230 YARFLWDAGEEEDDDD 245 (266)
Q Consensus 230 lA~ll~~~G~~~eA~~ 245 (266)
-|.+++.+|++++|++
T Consensus 112 Rg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEA 127 (504)
T ss_pred hchhhhhcccHHHHHH
Confidence 9999999999999994
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.2e-05 Score=77.54 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV------------LSMYGDLIWI 201 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a------------l~nla~ll~~ 201 (266)
+++++|...--..+++++.+.++++-.|.+++ ...+.++|..+|+++|.++|++..+ +..-|.-.++
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 78899999999999999999999999988877 5788999999999999999998654 3333444445
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcccccc
Q 024536 202 NHKDAPRAKSYFDRAVHSAPDDC----HVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 202 ~~gd~deAi~~~ekAL~l~P~da----~a~~~lA~ll~~~G~~~eA~~ 245 (266)
.|.+.+|.++|..||.++|++. ..+.+.|.+....|+..+|+.
T Consensus 262 -~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 262 -NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred -ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh
Confidence 6999999999999999999864 357789999999999999993
No 148
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.03 E-value=3.5e-05 Score=77.93 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+..++|+.+++++|+..|+...+|..+|.++. .+++.+.|...|...++.=|+....|..++.+- +..+..-+|...+
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~il 742 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSIL 742 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHH
Confidence 67899999999999999999999999999875 689999999999999999999999999999865 4478999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+++...||.++..|...-.+-++.|..+.|.
T Consensus 743 drarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 743 DRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999998887
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=4.7e-05 Score=73.63 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++..+|++.+.++|+.+|.++.++...|.+|. .+++++.|+.++++|+.+.|++-..|+.|+.+|.. .||++.|+..+
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALlaL 291 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLAL 291 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 56789999999999999999999999999987 58999999999999999999999999999999876 89999999877
Q ss_pred HHHHHhCCCC
Q 024536 214 DRAVHSAPDD 223 (266)
Q Consensus 214 ekAL~l~P~d 223 (266)
.-+=-..+.+
T Consensus 292 Ns~Pm~~~~~ 301 (395)
T PF09295_consen 292 NSCPMLTYKD 301 (395)
T ss_pred hcCcCCCCcc
Confidence 7554433333
No 150
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.3e-05 Score=73.31 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++.+|+..+.++|+++|+|..+++.-|.++. ..++|+.|...|++|++++|+|..+...+..+....+...++..++|
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999886 58999999999999999999999999888877655555556668888
Q ss_pred HHHHHhCCC
Q 024536 214 DRAVHSAPD 222 (266)
Q Consensus 214 ekAL~l~P~ 222 (266)
.+.+..-+.
T Consensus 350 ~~mF~k~~~ 358 (397)
T KOG0543|consen 350 ANMFAKLAE 358 (397)
T ss_pred HHHhhcccc
Confidence 888877664
No 151
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.97 E-value=9e-05 Score=65.35 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHH
Q 024536 134 KESESMDVYYQEMIK-AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 134 ~~~eeA~~~y~rALe-l~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--da~al~nla~ll~~~~gd~deAi 210 (266)
+++.+|..+|++++. +.-+++..+..++..+. ..+++.+|...+++..+.+|. .|..+..+|.++.. +|+++.|+
T Consensus 103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Ae 180 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAE 180 (251)
T ss_pred hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHH
Confidence 688999999998876 46678888888888876 468999999999999999886 46677778888866 89999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 211 SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 211 ~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
..|+.|+..-|+ +.+...|+.++..+|+.++|.+
T Consensus 181 safe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 181 SAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 999999999885 5788899999999999888874
No 152
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.96 E-value=0.00014 Score=61.02 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCC--
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKD-- 205 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd-- 205 (266)
++|++|++.|+......|..+ .+...++.+++ ..+++++|...+++-|+++|.++ .+++..|...+. +.+
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-~~~~~ 101 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-QDEGS 101 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-HhhhH
Confidence 688999999999999988765 56677777776 57899999999999999998886 466677766655 333
Q ss_pred -------------HHHHHHHHHHHHHhCCCCHHHH
Q 024536 206 -------------APRAKSYFDRAVHSAPDDCHVL 227 (266)
Q Consensus 206 -------------~deAi~~~ekAL~l~P~da~a~ 227 (266)
...|...|++.|..-|++..+-
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 6788899999999999887654
No 153
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.96 E-value=3.7e-05 Score=79.52 Aligned_cols=97 Identities=21% Similarity=0.189 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536 158 ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA 237 (266)
Q Consensus 158 ~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~ 237 (266)
...|+.++ ++|++++|+..+..+|+++|.++.+|+.+|.++.+ +||.++|...+-.|..++|.|...|..++....++
T Consensus 143 l~eAN~lf-arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 143 LGEANNLF-ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 34455665 57999999999999999999999999999998855 89999999999999999999999999999999999
Q ss_pred CCcccccccccccccCCCC
Q 024536 238 GEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 238 G~~~eA~~~~~~~~~~~~~ 256 (266)
|...+|+=.....-+.-|+
T Consensus 221 ~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPS 239 (895)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 9999988433333333343
No 154
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.94 E-value=5.8e-05 Score=75.33 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536 158 ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA 237 (266)
Q Consensus 158 ~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~ 237 (266)
+.+|..+. ..|++++|+.+.++||...|..++.|..-|.++-+ .|++++|..+++.|..+|+.|-.+-...+..+++.
T Consensus 198 ~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 45576553 57999999999999999999999999999999866 89999999999999999999999999999999999
Q ss_pred CCcccccc
Q 024536 238 GEEEDDDD 245 (266)
Q Consensus 238 G~~~eA~~ 245 (266)
|+.++|++
T Consensus 276 ~~~e~A~~ 283 (517)
T PF12569_consen 276 GRIEEAEK 283 (517)
T ss_pred CCHHHHHH
Confidence 99999995
No 155
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=2.4e-05 Score=70.37 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=84.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi 210 (266)
|+.|-+.-|.-.|.+++++.|+-|.+++.+|..+. ..|+++.|.+.|.-.+++||..-.++.|.|+.++- .|++.-|.
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq 153 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQ 153 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhH
Confidence 45566778888999999999999999999998776 57999999999999999999999999999988875 79999999
Q ss_pred HHHHHHHHhCCCCHH
Q 024536 211 SYFDRAVHSAPDDCH 225 (266)
Q Consensus 211 ~~~ekAL~l~P~da~ 225 (266)
.-+.+--..||+||.
T Consensus 154 ~d~~~fYQ~D~~DPf 168 (297)
T COG4785 154 DDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHHhcCCCChH
Confidence 999999999999985
No 156
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.91 E-value=3.1e-05 Score=47.71 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (266)
Q Consensus 189 a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d 223 (266)
|.+++.+|.+++. .|++++|+.+|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 3556667766655 667777777777777777764
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.87 E-value=0.0005 Score=54.22 Aligned_cols=109 Identities=24% Similarity=0.313 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYP---EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P---~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~-da~al~nla~ll~~~~gd~deA 209 (266)
+++++|..+|.+++..+| .....+..++..+. ..+++++|...+.+++...+. ...++..++..+.. .+++++|
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a 221 (291)
T COG0457 144 GDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEA 221 (291)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHH
Confidence 455666666666655555 23333333333322 345566666666666666666 45555555555433 4556666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+.++.+++...|.....+..++..+...++.+++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 66666666666654445555555555444444444
No 158
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.85 E-value=3.2e-05 Score=48.07 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~ 222 (266)
.+|+++|.++.. .+++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 456666666544 56666666666666666665
No 159
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.82 E-value=7.5e-05 Score=62.48 Aligned_cols=88 Identities=18% Similarity=0.223 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 024536 161 AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD----CHVLASYARFLWD 236 (266)
Q Consensus 161 A~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d----a~a~~~lA~ll~~ 236 (266)
|.++. ..|+++.|++.|.+||.+-|..+.+|+|.+..+. .+++.++|+.-+++|+++.-+. +.++..-|.+|..
T Consensus 50 ~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 33444 3699999999999999999999999999999884 5899999999999999998765 3467888999999
Q ss_pred cCCccccccccccc
Q 024536 237 AGEEEDDDDGDDQE 250 (266)
Q Consensus 237 ~G~~~eA~~~~~~~ 250 (266)
.|+.++|..-++..
T Consensus 128 ~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 128 LGNDDAARADFEAA 141 (175)
T ss_pred hCchHHHHHhHHHH
Confidence 99999998655433
No 160
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.80 E-value=0.00016 Score=69.24 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++++|.+....+++..-+.- +...++. + .-++...=++..++.++..|++|..+..+|.+++. .+.+.+|..+|
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~-l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~~~l 351 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR-LCRLIPR-L--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKASEAL 351 (400)
T ss_pred CChHHHHHHHHHHHHhccChh-HHHHHhh-c--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHHHHH
Confidence 788999999999999877665 3333332 2 35888999999999999999999999999999877 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
+.|++..|.. ..+..+|.++.++|+.++|.++.
T Consensus 352 eaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 352 EAALKLRPSA-SDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHH
Confidence 9999999854 66788999999999999999763
No 161
>PLN03077 Protein ECB2; Provisional
Probab=97.79 E-value=0.00012 Score=76.38 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA--LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~--~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
+..++|..+|+.+.+..+-.| ..|..+..+|. ..|++++|++++++. .+.|+ +.+|..+-..+. ..++.+.|+.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~e~ 678 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELGEL 678 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHHHH
Confidence 567888888888875543333 45555666554 578888898888875 35665 556666655553 4789999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
..+++++++|+++..+..++++|...|++++|.++.
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999999999999999999999999653
No 162
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.78 E-value=8e-05 Score=69.97 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=50.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYAR 232 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ 232 (266)
..|+.++|..+|++|++++|.+++++..+|.+... .+++-+|-.||-||+.++|.+.+++.+-++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 35778888888888888888888888888877644 677888888888888888888877665543
No 163
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.78 E-value=6.8e-05 Score=69.54 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA-PRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~-deAi~~ 212 (266)
+.+.+|.-.|++..+..+..+.+++.+|.+.. .+|++++|+..+++|+..+|++++++.|+..+... .|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHH
Confidence 46789999999988888899999999998765 68999999999999999999999999999877665 5665 788999
Q ss_pred HHHHHHhCCCCHHHH
Q 024536 213 FDRAVHSAPDDCHVL 227 (266)
Q Consensus 213 ~ekAL~l~P~da~a~ 227 (266)
+.+....+|+++.+.
T Consensus 259 l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 259 LSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHCHHHTTTSHHHH
T ss_pred HHHHHHhCCCChHHH
Confidence 999999999998764
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00024 Score=66.92 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d-a~al~nla~ll~~~~gd~deAi~~ 212 (266)
.++++|...+.+|++.||+..-+-..+|.+.. ..|+|++|.+.++++++.||+. +++.-.+..+|.+ .|+.++.+.+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 68899999999999999999999999999876 6899999999999999999986 5677777777755 7999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+.++++..++..- ...++.+.....-.++|.
T Consensus 272 L~~~~~~~~g~~~-~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 272 LRRAMETNTGADA-ELMLADLIELQEGIDAAQ 302 (389)
T ss_pred HHHHHHccCCccH-HHHHHHHHHHhhChHHHH
Confidence 9999999987643 344555555555555554
No 165
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=4.4e-05 Score=69.22 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc-
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG- 246 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~- 246 (266)
...|..|+.+|-+||.++|..+..|.|.+.++++ .++++.+..-+++|++++|+...+++.++..+.+...+++|+.+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4678999999999999999999999999999887 68999999999999999999999999999999999999999953
Q ss_pred --ccccccCCCCCCCCCC
Q 024536 247 --DDQETCASQPNILPPL 262 (266)
Q Consensus 247 --~~~~~~~~~~~~~~~~ 262 (266)
.-+-.+-.++||-+++
T Consensus 102 qra~sl~r~~~~~~~~di 119 (284)
T KOG4642|consen 102 QRAYSLLREQPFTFGDDI 119 (284)
T ss_pred HHHHHHHhcCCCCCcchH
Confidence 2223444455564443
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.74 E-value=0.00033 Score=63.24 Aligned_cols=83 Identities=14% Similarity=-0.035 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 024536 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL---SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH---V 226 (266)
Q Consensus 153 ~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al---~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~---a 226 (266)
.+..++..|.-+. ..|++++|.+.|++++...|+.+.+. +++|.++++ .+++++|+.+|++.+++.|+++. +
T Consensus 31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3444555555444 47999999999999999999998665 788988887 79999999999999999998865 4
Q ss_pred HHHHHHHHHHc
Q 024536 227 LASYARFLWDA 237 (266)
Q Consensus 227 ~~~lA~ll~~~ 237 (266)
++.+|......
T Consensus 109 ~Y~~g~~~~~~ 119 (243)
T PRK10866 109 LYMRGLTNMAL 119 (243)
T ss_pred HHHHHHhhhhc
Confidence 66666554333
No 167
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.72 E-value=0.00021 Score=72.47 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+-.+.-++++++|+..-|.-..+|..|+.-.+ ..||..+|...+.+|++.+|++-++|...-.+... ..++++|..+|
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w-~agdv~~ar~il~~af~~~pnseeiwlaavKle~e-n~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKW-KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-NDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-cccHHHHHHHH
Confidence 34566666777777777777777777776555 35777888888888888888877776543333222 34455555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.||....|. ..+|.-++.+.|.++..++|+
T Consensus 642 akar~~sgT-eRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 642 AKARSISGT-ERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHhccCCc-chhhHHHhHHHHHhhhHHHHH
Confidence 555554442 345555555555555555555
No 168
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.71 E-value=0.00038 Score=69.57 Aligned_cols=113 Identities=17% Similarity=0.066 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi 210 (266)
+..+++++|+.+.++||+..|..++++..-|.+|. ..|++++|.++++.|-.+|+.|-.+-...+..+.+ .|++++|+
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A~ 282 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEAE 282 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHHH
Confidence 34589999999999999999999999999999987 58999999999999999999999888878877665 89999999
Q ss_pred HHHHHHHHhC--CCC-------HHHHHHHHHHHHHcCCcccccc
Q 024536 211 SYFDRAVHSA--PDD-------CHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 211 ~~~ekAL~l~--P~d-------a~a~~~lA~ll~~~G~~~eA~~ 245 (266)
..+..-..-+ |.. .+.....|.++.++|++..|.+
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9998886655 211 2234578899999999999883
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.70 E-value=0.00099 Score=52.49 Aligned_cols=109 Identities=21% Similarity=0.224 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAK-FLKEIRGDFVKAEEYCGRAILAKP---GDGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~-~L~~~~gd~e~A~~~~erAL~ldP---~da~al~nla~ll~~~~gd~deAi 210 (266)
.+.+|+..+.+++..++.+......+.. ++. ..++++.|..+|++++..+| .....+..++..+.. .+++++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~ 187 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALY-ELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEAL 187 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHH
Confidence 4778888888888887777554444444 343 57888888888888888777 344445555544433 57888888
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcccccc
Q 024536 211 SYFDRAVHSAPD-DCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 211 ~~~ekAL~l~P~-da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
..+++++...+. ...++..++..+...++.++|..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 188 ELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred HHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHH
Confidence 888888888888 67788888888888887777764
No 170
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=7.7e-05 Score=46.29 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (266)
Q Consensus 154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d 188 (266)
+.+|+++|.++. ..+++++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 468999999876 6899999999999999999974
No 171
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.68 E-value=0.00012 Score=45.06 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (266)
Q Consensus 154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d 188 (266)
+.+|+++|.+++ ..|++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 568999999887 5899999999999999999986
No 172
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.64 E-value=2.1e-05 Score=57.46 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHcCCccccccc
Q 024536 186 PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA---P-D---DCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 186 P~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~---P-~---da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
|+-+.++.++|.+++. .|++++|+.+|++|+.+. + + -+.++.++|.++...|++++|++.
T Consensus 2 ~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 68 (78)
T PF13424_consen 2 PDTANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3446788999999876 899999999999999762 2 2 245788999999999999999864
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.00016 Score=66.36 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFL 234 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll 234 (266)
.+|..|..++.. .+..+.|...|++|+...+-...+|..+|.+-+...+|.+.|..+|+++++.-|.+..+|..|..++
T Consensus 2 ~v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 578888887764 3459999999999997667778999988887666567888899999999999999999999999999
Q ss_pred HHcCCccccccccccccc
Q 024536 235 WDAGEEEDDDDGDDQETC 252 (266)
Q Consensus 235 ~~~G~~~eA~~~~~~~~~ 252 (266)
...++.+.|..+.|..-+
T Consensus 81 ~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 81 IKLNDINNARALFERAIS 98 (280)
T ss_dssp HHTT-HHHHHHHHHHHCC
T ss_pred HHhCcHHHHHHHHHHHHH
Confidence 999998888766555433
No 174
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.62 E-value=0.0002 Score=62.36 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536 171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---------KDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239 (266)
Q Consensus 171 ~e~A~~~~erAL~ldP~da~al~nla~ll~~~~---------gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~ 239 (266)
++.|.+.++.+...||.|++++++.|.+|.++. .-+++|+.=|++||.++|+...++..+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 588999999999999999999999998886541 347889999999999999999999999999988775
No 175
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.62 E-value=0.0002 Score=73.12 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
.|++++|.++++++ ...| +..+|..+...+.. .|+++.|+..+++++.+.|++...+..+..+|...|++++|.++.
T Consensus 475 ~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 475 EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 34555555555442 1223 34456666655544 788899999999999999998888889999999999999999653
No 176
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.62 E-value=0.00048 Score=68.02 Aligned_cols=108 Identities=16% Similarity=0.092 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---------------------D---- 188 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~---------------------d---- 188 (266)
.+..+-+++-++||+++|+.+.+|.-||. +...-..+|+++|++|++.... +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 67788899999999999999999988875 2234467788888887763210 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcccccc
Q 024536 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD--DCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 189 a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
..+...+|.++++ .|+.++|++.|+..++..|. +-.++.++...|++.++++|+..
T Consensus 259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 2344568888877 79999999999999998885 45589999999999999999984
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.00049 Score=63.10 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=71.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCc
Q 024536 167 IRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHVLASYARFLWDAGEE 240 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a~~~lA~ll~~~G~~ 240 (266)
..|||..|+..|..-|..-|++ ++++++||.+++. +|++++|..+|.+++.--|+. +++++-+|..+.+.++.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 4699999999999999999987 4789999999988 899999999999999999876 46799999999999999
Q ss_pred ccccc
Q 024536 241 EDDDD 245 (266)
Q Consensus 241 ~eA~~ 245 (266)
++|-.
T Consensus 232 d~A~a 236 (262)
T COG1729 232 DEACA 236 (262)
T ss_pred HHHHH
Confidence 99984
No 178
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.59 E-value=0.00011 Score=71.90 Aligned_cols=109 Identities=17% Similarity=0.056 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
..++.|+..|-+||+++|+++..+.|.+.+.. ..+++-.|+.-+.+||+++|....+|+.-|.++.. .+.+.+|...|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHHH
Confidence 57999999999999999999999998885443 56899999999999999999999999999888866 68899999999
Q ss_pred HHHHHhCCCCHHHHHHHHH--HHHHcCCccccc
Q 024536 214 DRAVHSAPDDCHVLASYAR--FLWDAGEEEDDD 244 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~--ll~~~G~~~eA~ 244 (266)
++...+.|+++.+...+.. .+....+++.|+
T Consensus 96 ~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 96 EKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred HHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999998766654 344445677777
No 179
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0013 Score=65.08 Aligned_cols=95 Identities=14% Similarity=0.261 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (266)
Q Consensus 137 eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekA 216 (266)
.+-..+|++|+...+.|+.+|.+|..+.. ..+.+.+-...|.+++...|+++..|...|...+...-+.+.|..+|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 45566999999999999999999988765 45668899999999999999999999988877777555699999999999
Q ss_pred HHhCCCCHHHHHHHHH
Q 024536 217 VHSAPDDCHVLASYAR 232 (266)
Q Consensus 217 L~l~P~da~a~~~lA~ 232 (266)
|+.+|+.+..|..|-.
T Consensus 167 LR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhcCCCChHHHHHHHH
Confidence 9999999987655443
No 180
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.56 E-value=0.00084 Score=69.86 Aligned_cols=111 Identities=10% Similarity=0.123 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWIN 202 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~-----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~~ 202 (266)
+++++|..+++++++..|... .++.++|.++. ..|++++|..++++|+...... ..++.++|.+++.
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~- 543 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA- 543 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-
Confidence 689999999999999665532 34566776654 5899999999999999864421 2455677877766
Q ss_pred cCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCccccccc
Q 024536 203 HKDAPRAKSYFDRAVHSAPD--------DCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~P~--------da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+|++++|+.++++++.+... ...++..+|.+++..|++++|.+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 89999999999999997332 233456788899999999999743
No 181
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.49 E-value=0.0013 Score=70.95 Aligned_cols=42 Identities=12% Similarity=-0.045 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcccccc
Q 024536 204 KDAPRAKSYFDRAVHSA-PDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 204 gd~deAi~~~ekAL~l~-P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
|++++|..+|+++++.. +.+...+..+..+|.+.|+.++|.+
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44444444444444332 1233344444444444444444443
No 182
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00079 Score=64.01 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA-KPGD---GNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l-dP~d---a~al~nla~ll~~~~gd~deA 209 (266)
+.+.+|...+.+.|.-.|.+-.++.---.+.. ..|+.+.-...+++.|-. +|+- ..++..|+..+.+ .|-|++|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhH
Confidence 46678888899999999999887755433332 468888888899999998 7777 5667778877766 7999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++.-++|+++||.|+.+....+.++-..+++.|+.+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence 999999999999999999999999999999999985
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.00042 Score=63.40 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYP--ED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGD----GNVLSMYGDLIWI 201 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P--~~----~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~d----a~al~nla~ll~~ 201 (266)
+++++|..+|.+|.++.- ++ +.++.+.+.++. ..++++|+.+|++|+.+- -++ +.++..+|.++..
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k--~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK--KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 577888888888866642 22 234455555543 459999999999999962 333 4578888887755
Q ss_pred Hc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCcccccccccc
Q 024536 202 NH-KDAPRAKSYFDRAVHSAP--DD----CHVLASYARFLWDAGEEEDDDDGDDQ 249 (266)
Q Consensus 202 ~~-gd~deAi~~~ekAL~l~P--~d----a~a~~~lA~ll~~~G~~~eA~~~~~~ 249 (266)
. +++++|+.+|++|+++-- +. ...+..+|.++...+++++|++.-+.
T Consensus 127 -~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 127 -QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp -TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5 799999999999999832 22 23577999999999999999975443
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.43 E-value=0.0014 Score=57.23 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 024536 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH---VL 227 (266)
Q Consensus 154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~---a~ 227 (266)
+..++..|..+. ..|++++|...|++.+...|..+ .+++.+|.+++. .+++++|+..|++.+...|+++. ++
T Consensus 5 ~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 456677776665 58999999999999999988764 788899999887 79999999999999999998764 56
Q ss_pred HHHHHHHHHc
Q 024536 228 ASYARFLWDA 237 (266)
Q Consensus 228 ~~lA~ll~~~ 237 (266)
+..|..+..+
T Consensus 83 Y~~g~~~~~~ 92 (203)
T PF13525_consen 83 YMLGLSYYKQ 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6677666554
No 185
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.37 E-value=0.0014 Score=67.04 Aligned_cols=111 Identities=12% Similarity=-0.004 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
+++++|.+.|+++. +.+...|+.+...+. ..|++++|..+|++.... .|+ ...+..+..++.+ .+++++|..
T Consensus 273 g~~~~A~~vf~~m~---~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~-~g~~~~a~~ 346 (697)
T PLN03081 273 GDIEDARCVFDGMP---EKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSR-LALLEHAKQ 346 (697)
T ss_pred CCHHHHHHHHHhCC---CCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-ccchHHHHH
Confidence 67888888887663 456777777766654 578888888888888764 343 4456566656655 577788888
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCccccccccccc
Q 024536 212 YFDRAVHSA-PDDCHVLASYARFLWDAGEEEDDDDGDDQE 250 (266)
Q Consensus 212 ~~ekAL~l~-P~da~a~~~lA~ll~~~G~~~eA~~~~~~~ 250 (266)
+++.+++.. +.+..++..+..+|.+.|+.++|.++.+.+
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 887777776 455666777777777777777777665544
No 186
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.35 E-value=0.0018 Score=67.35 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--------DGNVLSMYGDLI 199 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--------da~al~nla~ll 199 (266)
+++++|..+|+++++..... ..++.++|.+++ ..|++++|..++++++.+... ...++..+|.++
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 78999999999999874432 235567777765 589999999999999996321 233455677777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcccccc
Q 024536 200 WINHKDAPRAKSYFDRAVHSAPD-----DCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 200 ~~~~gd~deAi~~~ekAL~l~P~-----da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+. .|++++|..++++++.+... .+.++..++.++...|++++|.+
T Consensus 584 ~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 584 WE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred HH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77 69999999999999987432 24456678899999999999974
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.0041 Score=50.67 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV 217 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL 217 (266)
.|++++|+.++++++.++|.|-.+|..+-.++.. .|+..+|+.+|++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 5666666666666666666666666666555544 566666666666553
No 188
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.33 E-value=0.00041 Score=42.77 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~ 222 (266)
.+|+.+|.++.. .|++++|+.+|++|++++|+
T Consensus 2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence 456666766654 66777777777777777664
No 189
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.33 E-value=0.0018 Score=63.95 Aligned_cols=110 Identities=23% Similarity=0.209 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHH
Q 024536 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----GNVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d----a~al~nla~ll~~~~gd~d 207 (266)
...+.+.|+++++...+..|+.+..++.-|.++. ..|+.++|.++|++|+.....- .-.++.+++++.. +.+++
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~ 322 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWE 322 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHH
Confidence 4578999999999999999999999999999876 6899999999999999644333 3456678887765 78999
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcccc
Q 024536 208 RAKSYFDRAVHSAPDD-CHVLASYARFLWDAGEEEDD 243 (266)
Q Consensus 208 eAi~~~ekAL~l~P~d-a~a~~~lA~ll~~~G~~~eA 243 (266)
+|..+|.+.++.+.-. +.+.+..|.++...++.+.+
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 9999999999987643 33455677888888988333
No 190
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.32 E-value=0.00036 Score=66.51 Aligned_cols=83 Identities=11% Similarity=0.009 Sum_probs=73.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536 161 AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEE 240 (266)
Q Consensus 161 A~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~ 240 (266)
|.-++ .+|.|++|+.||-++|.++|.|+..+.|.|.+|+. .+.|.-|+.-+..||.++-.+.-++..-+.+....|..
T Consensus 104 GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 44444 47999999999999999999999999999999987 67899999999999999998888888888888888888
Q ss_pred ccccc
Q 024536 241 EDDDD 245 (266)
Q Consensus 241 ~eA~~ 245 (266)
.+|.+
T Consensus 182 ~EAKk 186 (536)
T KOG4648|consen 182 MEAKK 186 (536)
T ss_pred HHHHH
Confidence 88774
No 191
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.32 E-value=0.00033 Score=63.15 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFL 234 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll 234 (266)
..++..|.+ +...|-.+-|.--|.+++++.|+-|++++.+|+.+.. .|+++.|.+.|+-.+++||.+-.++.+-|..+
T Consensus 66 ~l~fERGvl-YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 66 QLLFERGVL-YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHhcch-hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 344555543 3456777888889999999999999999999977655 89999999999999999999999999999999
Q ss_pred HHcCCcccccc
Q 024536 235 WDAGEEEDDDD 245 (266)
Q Consensus 235 ~~~G~~~eA~~ 245 (266)
.--|++.-|.+
T Consensus 144 YY~gR~~LAq~ 154 (297)
T COG4785 144 YYGGRYKLAQD 154 (297)
T ss_pred eecCchHhhHH
Confidence 99999998884
No 192
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.29 E-value=0.00038 Score=65.54 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ 197 (266)
+..++|..+|..|++++|+++.++..+|.|.. ..+++-+|..||-+||.++|.+.+++.|.+.
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 57799999999999999999999999999885 4689999999999999999999999988764
No 193
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.29 E-value=0.0012 Score=71.49 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--da~al~nla~ll~~~~gd~deAi~ 211 (266)
+.+++|.++|+.+++-.-+...+|..|+.+|. .+.+-++|...++|||..-|. +-++..-+|.+-+. .||.+++..
T Consensus 1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRt 1621 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRT 1621 (1710)
T ss_pred hcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHH
Confidence 67899999999999999988999999999986 467778899999999999998 77888888887776 799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQE 250 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~ 250 (266)
+|+-.+...|.-...|..|...-..+++.+.+....|+.
T Consensus 1622 lfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1622 LFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999999999999998888888777776655543
No 194
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.27 E-value=0.0049 Score=59.31 Aligned_cols=110 Identities=18% Similarity=0.122 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-~al~nla~ll~~~~gd~deAi~~ 212 (266)
|+|.+|+++..++-+..+.-..++.--+.+.. .+||++.|-.|..+|-+..+++- .+....+.++.. ++|++.|..-
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~-qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQ-QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHH-hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CCCchhHHHH
Confidence 79999999999988877776666666666554 68999999999999999966554 455566777766 8999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
..++++..|.+++++.-...+|...|++++...
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999999999988764
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00083 Score=62.10 Aligned_cols=121 Identities=19% Similarity=0.146 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHHcCCH
Q 024536 134 KESESMDVYYQEMIKAY-PEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL----AKP--GDGNVLSMYGDLIWINHKDA 206 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~-P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~----ldP--~da~al~nla~ll~~~~gd~ 206 (266)
++|.-....|.+.++.+ |..+.+...++.+-. +-||.+.|..+|+++-+ ++- +.-.++.+.+.++.- ++++
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~ 268 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNF 268 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccch
Confidence 67888899999999999 678888889998775 57999999999996544 332 334566777766644 7899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536 207 PRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~ 256 (266)
..|...|.+.+..||.++.+.++-|.++...|+..+|+++-|.+-+-.|.
T Consensus 269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999776555544443
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.00062 Score=62.31 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHC--CCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAY--PED----ALVLANYAKFLKEIR-GDFVKAEEYCGRAILAKP--GD----GNVLSMYGDLIWI 201 (266)
Q Consensus 135 ~~eeA~~~y~rALel~--P~~----~~al~nlA~~L~~~~-gd~e~A~~~~erAL~ldP--~d----a~al~nla~ll~~ 201 (266)
++++|+.+|++|+++. -++ +.++.++|.++. .. +++++|..+|++|+.+-- +. ..++..+|.++..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 7899999999999983 222 357788888775 45 899999999999999732 22 2456778888776
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----H---HHHHHHHHHHHHcCCccccccc
Q 024536 202 NHKDAPRAKSYFDRAVHSAPDD----C---HVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 202 ~~gd~deAi~~~ekAL~l~P~d----a---~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
.++|++|+.+|++++...-++ . ..+.....+++..|+...|.+.
T Consensus 168 -l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 168 -LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp -TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred -hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 789999999999999864321 1 2345667788888988888743
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.25 E-value=0.0036 Score=52.55 Aligned_cols=82 Identities=12% Similarity=0.025 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH---VLA 228 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~---a~~ 228 (266)
..+++-|.-.. ..|+|++|.+.|+.....-|..+ .+...++.+++. .+++++|+..+++-|+++|.++. +++
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45555555444 47999999999999999988754 678889988887 89999999999999999998875 455
Q ss_pred HHHHHHHHcC
Q 024536 229 SYARFLWDAG 238 (266)
Q Consensus 229 ~lA~ll~~~G 238 (266)
..|.....+.
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 198
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.22 E-value=0.0038 Score=67.36 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~-~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~da~al~nla~ll~~~~gd~deAi 210 (266)
++.++|..+|+++.+.... |...|+.+-..+. ..|++++|..+|++.... .|+ ...|..+...+.+ .|++++|.
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~-k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k-~G~~deA~ 562 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA-RAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQ-SGAVDRAF 562 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH-CCCHHHHH
Confidence 4555555555555554332 3444444433332 345555555555554432 222 3333333333333 34444444
Q ss_pred HHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 211 SYFDRAVH----SAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 211 ~~~ekAL~----l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
.+|++... +.|+ ...+..+..+|.+.|+.++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHH
Confidence 44444433 1232 2333334444444444444443
No 199
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.003 Score=57.95 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHH--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKA--------YPEDA----------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195 (266)
Q Consensus 134 ~~~eeA~~~y~rALel--------~P~~~----------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nl 195 (266)
++|.+|+..|+.||.. .|..+ .++.||+.++. ..++|=++++.....|...|.+..+|+..
T Consensus 192 ~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~frR 270 (329)
T KOG0545|consen 192 GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYFRR 270 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 6899999999999754 45544 56788888775 57999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024536 196 GDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLA 228 (266)
Q Consensus 196 a~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~ 228 (266)
|.+... .=+.++|.+-|+++++++|.-+.+..
T Consensus 271 akAhaa-~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 271 AKAHAA-VWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHHh-hcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 987765 45789999999999999998766544
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.0051 Score=54.48 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL-AKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~-ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+.+.+..-..+.++..|.... .+.||..+. ..|++.+|+..|++++. +-.+|+..+..++...+. .+++.+|...+
T Consensus 71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~-elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tL 147 (251)
T COG4700 71 DPERHLREATEELAIAPTVQN-RYRLANALA-ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTL 147 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHH-HHHHHHHHH-HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHH
Confidence 445555566666777776543 455677665 37999999999999998 567889999999999887 68999999999
Q ss_pred HHHHHhCCC--CHHHHHHHHHHHHHcCCccccccc
Q 024536 214 DRAVHSAPD--DCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 214 ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
++..+.+|. .+.-...+|.+|..+|++++|+..
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa 182 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA 182 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH
Confidence 999999995 455677899999999999998843
No 201
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0022 Score=59.72 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG--DLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla--~ll~~~~gd~deAi~ 211 (266)
+++.+|...|..++..+|++..+...|+.++. ..|+.+.|...+...=....++.. +..-+ .++.+ ..+..+ ..
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~-~~l~a~i~ll~q-aa~~~~-~~ 223 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAA-HGLQAQIELLEQ-AAATPE-IQ 223 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHH-HHHHHHHHHHHH-HhcCCC-HH
Confidence 78899999999999999999999999999876 479999888766553222222221 11111 12212 222222 24
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
-+++.+..+|+|..+.+.+|..+...|+.++|.++
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56778888999999999999999999999999853
No 202
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.0027 Score=62.71 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYPE----DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~----~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA 209 (266)
++.+.+.+.|+.+|++-|. .+.+|..||.+.. .+.++..|.+.+..||-.-|.+--.- .|-.+-.+ .+++|+.
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~ARkiLG~AIG~cPK~KlFk-~YIelElq-L~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGARKILGNAIGKCPKDKLFK-GYIELELQ-LREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHHHHHHHHhccCCchhHHH-HHHHHHHH-HhhHHHH
Confidence 7889999999999999996 4688889998775 46788999999999999999875433 33333334 4689999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
..+|++-|+..|.++.+|..+|.+-...|+.+.|..+.+
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999988875543
No 203
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.07 E-value=0.0031 Score=63.64 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDAL-VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~-al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
++...|++++++|+-..|.... .+.|||.++.. -+-.-+|-.++.++|.++-..|..++.+|.++.. ..+.++|++.
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~a~~~ 698 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISGALEA 698 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHHHHHH
Confidence 6779999999999999998764 57888887753 4677899999999999998889999999998876 5789999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 024536 213 FDRAVHSAPDDCHVLASYARFLW 235 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~ 235 (266)
|++|++++|+++.....+-.+.+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999998887766655
No 204
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.0022 Score=57.24 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=69.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGN-----VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE 241 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~-----al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~ 241 (266)
..|+|++|..-|..||++=|..+. .|.|.|.++.. .+.++.|+.-+-+||+++|.+-.++...|.+|-....++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 479999999999999999987653 56677777766 678999999999999999999999999999999999999
Q ss_pred cccc
Q 024536 242 DDDD 245 (266)
Q Consensus 242 eA~~ 245 (266)
+|++
T Consensus 186 eale 189 (271)
T KOG4234|consen 186 EALE 189 (271)
T ss_pred HHHH
Confidence 9984
No 205
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.98 E-value=0.00023 Score=67.36 Aligned_cols=88 Identities=17% Similarity=0.064 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+.+++|+++|-+||+++|..+.+|.+.+.++. ..+...+|++-|..|+.++|+.+.-|-..+.+. .+.|++++|..++
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-RLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHH-HHhhchHHHHHHH
Confidence 45899999999999999999999999998775 367789999999999999999987665555544 3478999999999
Q ss_pred HHHHHhCCCC
Q 024536 214 DRAVHSAPDD 223 (266)
Q Consensus 214 ekAL~l~P~d 223 (266)
..|.+++=+-
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 9999998653
No 206
>PLN03077 Protein ECB2; Provisional
Probab=96.96 E-value=0.005 Score=64.38 Aligned_cols=110 Identities=11% Similarity=-0.009 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
+++++|...|+++ +.+...|+.+...+. ..|+.++|+++|++.++. .|+..... .+-..+.+ .|++++|..
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~ll~a~~~-~g~v~ea~~ 610 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFI-SLLCACSR-SGMVTQGLE 610 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHH-HHHHHHhh-cChHHHHHH
Confidence 6788888888876 567778887776654 579999999999988874 56655433 33334544 788999999
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHcCCccccccccccc
Q 024536 212 YFDRAVHSAPD--DCHVLASYARFLWDAGEEEDDDDGDDQE 250 (266)
Q Consensus 212 ~~ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~~~~~~ 250 (266)
+|++..+..+- +...+..+..+|.+.|+.++|.+.-+.+
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99998854322 3456778889999999999998765554
No 207
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0086 Score=55.31 Aligned_cols=110 Identities=12% Similarity=-0.002 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK-EIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~-~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
.+++-|+..++++.+++-+.......-+++-. .....+.+|.-+|+..-..-|-.+..+...+.+... ++++++|+..
T Consensus 151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeAe~l 229 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHHHHH
Confidence 67888999999999888765433222222111 123468899999999988777788888889988766 7999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
++.|+..++++++.+.++-.+-...|...++.
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 99999999999999999999999999998877
No 208
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.92 E-value=0.025 Score=51.24 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 024536 132 SGKESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRG--------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~-~~al~nlA~~L~~~~g--------d~e~A~~~~erAL~ldP~da~al~nla~ll~~~ 202 (266)
...+..+|..+|++|.+..-.. ..+.++++.++. .| +..+|..+|.+|-... ++.+..++|.++..-
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 5569999999999999986555 455777777654 23 3458999999998887 788888899777542
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536 203 ---HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG 238 (266)
Q Consensus 203 ---~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G 238 (266)
..|+.+|..+|++|.+... ..++..++ ++...|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2388999999999999887 77888888 666666
No 209
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.91 E-value=0.0019 Score=39.73 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d 188 (266)
.+|+.+|.++. ..|++++|..+|++|++++|++
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 57889998876 5899999999999999999953
No 210
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.84 E-value=0.0018 Score=60.98 Aligned_cols=90 Identities=8% Similarity=0.156 Sum_probs=76.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024536 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (266)
Q Consensus 142 ~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P 221 (266)
.|.|+....|+++.+|..|+.+.. ..+.+.+-...|-+++...|.|.+.|...+..-+...++++.+..+|.++++++|
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 567777788999999999987554 5678899999999999999999999987554445557899999999999999999
Q ss_pred CCHHHHHHHHH
Q 024536 222 DDCHVLASYAR 232 (266)
Q Consensus 222 ~da~a~~~lA~ 232 (266)
++|.+|..|-.
T Consensus 174 ~~p~iw~eyfr 184 (435)
T COG5191 174 RSPRIWIEYFR 184 (435)
T ss_pred CCchHHHHHHH
Confidence 99998876643
No 211
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.68 E-value=0.04 Score=51.65 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=77.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536 140 DVYYQEMIKAYPEDALVLANYAKFLKEIRG-----------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (266)
Q Consensus 140 ~~~y~rALel~P~~~~al~nlA~~L~~~~g-----------d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~de 208 (266)
..-|.+.++.+|.|..+|..|..+.-.... -.+..+.+|++||+.+|++...+..|-.+..+ .-+.++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence 357899999999999999999875432111 13677889999999999999998887777765 468899
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 209 AKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
...-+++++..+|++...|..|-.+...
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999998877665544
No 212
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.0077 Score=59.59 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
-+++..|...|.+||..+-.+..+|..|+.+-. ..+...-|...+.||+.+=|---..|+-|-.+- .+.|+.+-|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE-E~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYME-EMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH-HHhcccHHHHHH
Confidence 378999999999999999999999999998764 457788999999999999999999999887544 557999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ 249 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~ 249 (266)
|++=+...|+. .+|..+..+-+...+.+.|..+-+.
T Consensus 164 ferW~~w~P~e-qaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 164 FERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred HHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999964 7888888888888888888866443
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.65 E-value=0.0033 Score=61.30 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Q 024536 133 GKESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------DGNVLSMYGDLIW 200 (266)
Q Consensus 133 ~~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~------da~al~nla~ll~ 200 (266)
.++|++|+.+-+.-|++.-... -++.|+|.... ..|+++.|.++|++++.+.-. .+...+.+|..|.
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence 3899999998888777765543 47888988764 579999999999998876432 3456778888887
Q ss_pred HHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCccccc
Q 024536 201 INHKDAPRAKSYFDRAVHSAP------DDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 201 ~~~gd~deAi~~~ekAL~l~P------~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
. ..++++||.|+++-+++.- ....+++.||.++...|..+.|.
T Consensus 287 l-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 287 L-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 6 5689999999999887764 24568889999999999999887
No 214
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.025 Score=52.32 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+.+..|--+|+..-+.-|-.+..++..|.+.. .++++++|+..++.||..++++++++.|+-.+......+.+--.++.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 35889999999999988888999888887654 68999999999999999999999999999877766556667778899
Q ss_pred HHHHHhCCCCHHH
Q 024536 214 DRAVHSAPDDCHV 226 (266)
Q Consensus 214 ekAL~l~P~da~a 226 (266)
.+.....|..+.+
T Consensus 266 ~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 266 SQLKLSHPEHPFV 278 (299)
T ss_pred HHHHhcCCcchHH
Confidence 9999999998765
No 215
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.61 E-value=0.0041 Score=39.50 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536 192 LSMYGDLIWINHKDAPRAKSYFDRAV 217 (266)
Q Consensus 192 l~nla~ll~~~~gd~deAi~~~ekAL 217 (266)
|.++|.++.. .|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~-~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQ-QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHH-CT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4556655544 566666666666633
No 216
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.59 E-value=0.044 Score=50.15 Aligned_cols=110 Identities=18% Similarity=0.154 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc----
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINH---- 203 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~---al~nla~ll~~~~---- 203 (266)
+++++|+..|+++....|..+ .++..++.+.+ ..+++++|+.+.++-+.+.|.++. +++..|..++...
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccc
Confidence 689999999999999999886 46667776666 479999999999999999998875 4555554443211
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCccccc
Q 024536 204 ---KDAPRAKSYFDRAVHSAPDDCHV-----------------LASYARFLWDAGEEEDDD 244 (266)
Q Consensus 204 ---gd~deAi~~~ekAL~l~P~da~a-----------------~~~lA~ll~~~G~~~eA~ 244 (266)
.-..+|+.-|+..|..-|+...+ -...|.+|.+.|.+..|+
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 12456777888888888876432 235677888888877777
No 217
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.54 E-value=0.004 Score=35.35 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (266)
Q Consensus 191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~ 222 (266)
++.++|.++.. .+++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 45555655544 45666666666666666554
No 218
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.009 Score=56.32 Aligned_cols=110 Identities=13% Similarity=0.043 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHH------------------------------HHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYC------------------------------GRAIL 183 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~------------------------------erAL~ 183 (266)
.++..|..+|.+.-.+.|........+|..|+. .+.+.+|++.. +-.++
T Consensus 58 Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 58 QEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 566777777777777777766555555544442 23333332221 11222
Q ss_pred hCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 184 AKP--GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 184 ldP--~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
.-| +++.+..+.|.++++ .|++++|++-|+.|++..--++-+.+++|.+.+..++++.|.+
T Consensus 137 Qlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 137 QLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred hccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 334 566667777766666 7899999999999999999999999999999999999999985
No 219
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.012 Score=59.15 Aligned_cols=107 Identities=12% Similarity=-0.012 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHH
Q 024536 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~d 207 (266)
+.-++|++|++...+.+...|+++.++..--.++. ....|++|+. .|+.++.+. ...+.-|.+.|+ .+..|
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI-q~~ky~~ALk----~ikk~~~~~~~~~~~fEKAYc~Yr-lnk~D 96 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALI-QLDKYEDALK----LIKKNGALLVINSFFFEKAYCEYR-LNKLD 96 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh-hhhHHHHHHH----HHHhcchhhhcchhhHHHHHHHHH-cccHH
Confidence 44579999999999999999999998877655554 3577888874 444444311 111355666676 67899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+|+..++ -+++.+.-++.-.|.+++..+++++|.++
T Consensus 97 ealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdi 132 (652)
T KOG2376|consen 97 EALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDI 132 (652)
T ss_pred HHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999998 56777777888888999999999998853
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.034 Score=53.66 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH--
Q 024536 132 SGKESESMDVYYQEMIKA----YPEDALVLANYAKFLKE--IRGDFVKAEEYCGR-AILAKPGDGNVLSMYGDLIWIN-- 202 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel----~P~~~~al~nlA~~L~~--~~gd~e~A~~~~er-AL~ldP~da~al~nla~ll~~~-- 202 (266)
..++|+.-+.+.+..-.+ -++.+.+...||.+|.. ..|+.++|+..+.. .....+.+++.+..+|.++-..
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~ 232 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL 232 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence 347888888888777666 56677888889987752 16899999999999 4455678999999999887432
Q ss_pred ------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 203 ------HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 203 ------~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
....++|+.+|.++.+++|+ .+.-.|++.++...|...+..
T Consensus 233 ~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 233 ESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccch
Confidence 12478999999999999964 466678888888888754443
No 221
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.45 E-value=0.027 Score=59.02 Aligned_cols=103 Identities=14% Similarity=-0.009 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+++.+|.+...+.++..|+-..+...-|..+. ..|+.++|..+++..-...++|-..+..+-.+|.+ .+++++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHH
Confidence 68999999999999999999988877777665 58999999988888888888898888888888866 78999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGE 239 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~ 239 (266)
++|+...|. -+.+..+=.++.+-+.
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 999999998 5544444444444443
No 222
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.033 Score=56.15 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY------GDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nl------a~ll~~~~gd~d 207 (266)
++...+...++.++.++|+++.++.||+..+......+..+....+.|....|++.+++..+ +.++- ..++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 159 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK-LLGRTA 159 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH-HhccHH
Confidence 45577888999999999999999999998875445566777778888999999999988877 65543 367899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536 208 RAKSYFDRAVHSAPDDCHVLASYARF 233 (266)
Q Consensus 208 eAi~~~ekAL~l~P~da~a~~~lA~l 233 (266)
+|..+.++++++.|.++++...+...
T Consensus 160 ~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 160 EAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 99999999999999998887766655
No 223
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.41 E-value=0.0065 Score=36.67 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (266)
Q Consensus 191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~ 222 (266)
+++++|.++.. .|++++|+.+|+++++..|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 45566666554 56666666666666666665
No 224
>PRK10941 hypothetical protein; Provisional
Probab=96.39 E-value=0.028 Score=51.90 Aligned_cols=60 Identities=15% Similarity=-0.030 Sum_probs=56.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL 227 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~ 227 (266)
..+++++|+++.++.+.++|+++.-+...|.++.+ .+.+..|..-++..|+..|+++.+.
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHH
Confidence 57999999999999999999999999999988876 7999999999999999999998764
No 225
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.37 E-value=0.07 Score=48.29 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----c
Q 024536 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWIN----H 203 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---~~gd~e~A~~~~erAL~ldP~d-a~al~nla~ll~~~----~ 203 (266)
...+..+|..+|+ ...+..++.+.++||.++.. +..|+.+|..+|++|....-.. ..+.++++.++..- .
T Consensus 89 v~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 89 VSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred ccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 3466899999999 66678889999999998753 2348999999999999985544 34477788766441 0
Q ss_pred C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 204 K--DAPRAKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 204 g--d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
- +...|+.+|.+|.... ++.+...++.+|..
T Consensus 167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 1 3458999999999987 66778888866654
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.049 Score=44.24 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
++..++.++.. .|++++|+.++++++.++|-+-.++..+-.+|..+|+..+|+++
T Consensus 64 ~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~ 118 (146)
T PF03704_consen 64 ALERLAEALLE-AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRV 118 (146)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 34455655555 79999999999999999999999999999999999999999964
No 227
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.032 Score=56.32 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL------------------------------ 183 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~------------------------------ 183 (266)
...++|+..++ -+++.+..++.-.|.++| ..++|++|...|+..++
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 46678888877 567777777777888887 47889999888887743
Q ss_pred hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC-------HHHHHHHHHHHHHcCCccccccc
Q 024536 184 AKPG-DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA--------PDD-------CHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 184 ldP~-da~al~nla~ll~~~~gd~deAi~~~ekAL~l~--------P~d-------a~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
..|. +-+.++|.|.++.. .|+|.+|++.+++|+++- -++ ..++..++.++..+|+.++|.++
T Consensus 169 ~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred CCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 2233 34567788877766 799999999999994321 110 12577899999999999999864
No 228
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.31 E-value=0.049 Score=42.01 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (266)
Q Consensus 139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d 188 (266)
.+..++++++.+|++..+.+.+|..+. ..|++++|.+.+-.++..+|+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence 356788888888888888888888765 5788888888888888888765
No 229
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.30 E-value=0.022 Score=43.91 Aligned_cols=66 Identities=15% Similarity=0.012 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCc
Q 024536 174 AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD--CHVLASYARFLWDAGEE 240 (266)
Q Consensus 174 A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d--a~a~~~lA~ll~~~G~~ 240 (266)
....++++++.+|+|..+.+.+|..+.. .|++++|+..+-.++..++++ ..+...+-.++...|..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3557889999999999999999998866 899999999999999999865 55666666666666653
No 230
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.22 E-value=0.024 Score=39.72 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536 192 LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL 227 (266)
Q Consensus 192 l~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~ 227 (266)
++.+|+.++. .|+|++|..+.+++|+++|+|.++.
T Consensus 4 lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4445555554 4566666666666666666665554
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.20 E-value=0.0062 Score=59.45 Aligned_cols=105 Identities=12% Similarity=0.150 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHc
Q 024536 134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP------GDGNVLSMYGDLIWINH 203 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP------~da~al~nla~ll~~~~ 203 (266)
+++.+.+.+|+.||++..++- .+|..||.++. ..+||++|++|-..-|.+.. ..+..-.|+|..+ +++
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyf-yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl-Kv~ 108 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYF-YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL-KVK 108 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhh-hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh-hhh
Confidence 577888999999999999885 45666777765 47999999998776665432 3345567899887 558
Q ss_pred CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCc
Q 024536 204 KDAPRAKSYFDRAVHSAPD------DCHVLASYARFLWDAGEE 240 (266)
Q Consensus 204 gd~deAi~~~ekAL~l~P~------da~a~~~lA~ll~~~G~~ 240 (266)
|.|++|+.++.+-+.+.-. ...+++++|.+|...|+.
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC 151 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence 9999999999998877542 346899999999998874
No 232
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.20 E-value=0.28 Score=42.06 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
++.++++.+++..--+.|+.+.+-..-|+++. .+|++.+|+..++.+.+..|..+.+-..++.+++. .+|.+ =..|-
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~-Wr~~A 100 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS-WRRYA 100 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH-HHHHH
Confidence 47899999999999999999999988888665 68999999999999999999999999999988866 67654 34556
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+++++..+ ++.+.. +...+....+...|.+
T Consensus 101 ~evle~~~-d~~a~~-Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 101 DEVLESGA-DPDARA-LVRALLARADLEPAHE 130 (160)
T ss_pred HHHHhcCC-ChHHHH-HHHHHHHhccccchhh
Confidence 66777665 555554 3444555555555543
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.19 E-value=0.049 Score=53.82 Aligned_cols=115 Identities=17% Similarity=0.058 Sum_probs=85.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC-HHH-----HHHHHH--HHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536 131 DSGKESESMDVYYQEMIKAYPED-ALV-----LANYAK--FLKE--IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW 200 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALel~P~~-~~a-----l~nlA~--~L~~--~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~ 200 (266)
|+.++.+.+++++.++.+..--+ +.+ +++... ++-. ...+.+.|++.+++....-|+.+-.++..|.++.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34578899999999998833222 211 111111 1110 1356799999999999999999999999999876
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCccccccc
Q 024536 201 INHKDAPRAKSYFDRAVHSAPDDCH----VLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 201 ~~~gd~deAi~~~ekAL~l~P~da~----a~~~lA~ll~~~G~~~eA~~~ 246 (266)
. +|+.++|+++|++|+.....-.+ .++.+++.+.-+.++++|.+.
T Consensus 279 ~-~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 279 L-KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred H-hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 5 89999999999999965554443 477899999999999999854
No 234
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.18 E-value=0.081 Score=45.33 Aligned_cols=73 Identities=21% Similarity=0.080 Sum_probs=66.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEE 240 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~ 240 (266)
..++.++++..+...--+.|..+++-..-|+++.. +|++++|+.+|+.+.+-.|..+.+...++.+|...++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 35799999999999999999999999888888766 89999999999999999999999988899999888875
No 235
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.11 E-value=0.01 Score=33.53 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d 188 (266)
.++.++|.++. ..+++++|..+|+++++++|.+
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCC
Confidence 46788888776 5799999999999999999864
No 236
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.09 E-value=0.012 Score=37.34 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Q 024536 156 VLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGD 188 (266)
Q Consensus 156 al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~d 188 (266)
+|.++|.++. ..|++++|+.+|++||.+ +|++
T Consensus 1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYR-QQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccC
Confidence 5789999876 689999999999996644 4544
No 237
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.08 E-value=0.0074 Score=54.82 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~ 190 (266)
.+.+.|.++|.+|+++.|++..-|+.+|.+- +..|+++.|.+.|++.++++|.|..
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence 5677788888888888888888888888643 4568888888888888888887754
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.026 Score=54.01 Aligned_cols=112 Identities=16% Similarity=0.064 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 135 ESESMDVYYQEMIKA-YPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 135 ~~eeA~~~y~rALel-~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi 210 (266)
+.+.-...+++.+-. +|+. ..++..|+.-|. ..|-|++|++..++|+++||.|.-+....+.++. +.+++.++.
T Consensus 152 ~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle-m~~r~Keg~ 229 (491)
T KOG2610|consen 152 NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLE-MNGRHKEGK 229 (491)
T ss_pred chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHH-hcchhhhHH
Confidence 444455577888877 7777 567777776665 5899999999999999999999999999999884 589999999
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHHcCCccccccccc
Q 024536 211 SYFDRAVHSAPDD----CHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 211 ~~~ekAL~l~P~d----a~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
++.++--..=-.. +.-+..-|.++.+.++++.|+++.+
T Consensus 230 eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 230 EFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9887643221111 1113345778888899999987643
No 239
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.97 E-value=0.059 Score=45.22 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHHcCCHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAIL-AKPGD-GNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~--~~gd~e~A~~~~erAL~-ldP~d-a~al~nla~ll~~~~gd~deAi 210 (266)
++-...+.+++.-...--.....+|||++|-. ...|..+.+.+++..++ ..|.. -+.++.+|..+++ .++|++|+
T Consensus 13 d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~ 91 (149)
T KOG3364|consen 13 DLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSL 91 (149)
T ss_pred hhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHH
Confidence 33344444444444433344677888887742 23567889999999997 56654 3566778877877 58899999
Q ss_pred HHHHHHHHhCCCCHHHH
Q 024536 211 SYFDRAVHSAPDDCHVL 227 (266)
Q Consensus 211 ~~~ekAL~l~P~da~a~ 227 (266)
.|++..++.+|+|.++.
T Consensus 92 ~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 92 RYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHhhCCCcHHHH
Confidence 99999999999999875
No 240
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.93 E-value=0.015 Score=57.86 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHH-HHHCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCC---------
Q 024536 134 KESESMDVYYQEM-IKAYPE--------DALVLANYAKFLKEIRGDFVKAEEYCGRAIL---------AKP--------- 186 (266)
Q Consensus 134 ~~~eeA~~~y~rA-Lel~P~--------~~~al~nlA~~L~~~~gd~e~A~~~~erAL~---------ldP--------- 186 (266)
+++.+|.+++... +...|. ...+|+|+|.+.+ ..+.|..+..+|.+||+ +.|
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 4667777766443 555555 3467899998776 57899999999999996 111
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536 187 GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA 237 (266)
Q Consensus 187 ~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~ 237 (266)
..-+++||+|+.+.. .|+.-.|.++|.+|+..--.+|..|..+|.+....
T Consensus 333 ks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 235789999988877 79999999999999999999999999999876654
No 241
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.88 E-value=0.029 Score=50.08 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 174 AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 174 A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
|+.||.+|+.+.|++...|+.+|.+... +++.-.|+-+|-|++...--.+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3445555555555555555555544433 4555555555555554444444455555554444
No 242
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.85 E-value=0.02 Score=34.49 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d 188 (266)
++++++|.++. ..|++++|..+|++++...|++
T Consensus 1 ~a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence 47889998876 4899999999999999999974
No 243
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.11 Score=48.19 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP-RAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~d-eAi~~ 212 (266)
+.-.+|.++...+|.++|.|-.+|...=.+|.+.+.++.+-+.++.+.++-+|.|-++|...-.++ +..+++. +-+++
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv-e~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV-ELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHH-HHhcCcccchHHH
Confidence 445789999999999999999999887777776778899999999999999999999998877665 5578888 88999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.++++..+..+-.||..--+++..-+.+++..
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 99999999999999998889988888887766
No 244
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.76 E-value=0.016 Score=52.73 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=52.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH 225 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~ 225 (266)
..+|.+.|.+.|.+|+++.|++...|+.+|..- +..|+++.|.+.|++.++++|++-.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence 368999999999999999999999999999754 5589999999999999999998753
No 245
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.73 E-value=0.17 Score=47.40 Aligned_cols=110 Identities=17% Similarity=0.194 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH--KDAPRAKSY 212 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~--gd~deAi~~ 212 (266)
-.+.-+..|++||+.+|++..++..|=.... ..-+.++..+.+++++..+|++...|..|-.+..... -.+++....
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4567788999999999999988877766554 3457888899999999999999999998876553311 246677777
Q ss_pred HHHHHHhCCCC------------------HHHHHHHHHHHHHcCCcccccc
Q 024536 213 FDRAVHSAPDD------------------CHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 213 ~ekAL~l~P~d------------------a~a~~~lA~ll~~~G~~~eA~~ 245 (266)
|.++|..-..- .+++..+..+++++|-.+.|+.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 77776543211 1357788999999999999983
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.67 E-value=0.089 Score=48.19 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=52.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHV 226 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a 226 (266)
..|++++|..+|+++....|..+ .++..++.++++ .++++.|+.+.++-+.+.|.++.+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCCh
Confidence 47999999999999999988775 677788888877 799999999999999999987754
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.65 E-value=0.038 Score=53.31 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDAL------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----D------GNVLSMYGD 197 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~------al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~----d------a~al~nla~ 197 (266)
..++++++.|++|+++..++.+ +...++.++. ...|+++|..+..+|+++-.. | ..+++.+++
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 6799999999999998766543 4455676554 578999999999999997532 2 245667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcccccc
Q 024536 198 LIWINHKDAPRAKSYFDRAVHSAP------DDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 198 ll~~~~gd~deAi~~~ekAL~l~P------~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
.+. ++|..-.|.++++.|.++.= -.+.-+..+|.+|...|+.+.|-.
T Consensus 215 alR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 215 ALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 664 58999999999999988753 234456688999999999888764
No 248
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.069 Score=51.51 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH--------------
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYG-------------- 196 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla-------------- 196 (266)
++|++|...|.-+.+.+.-+++++.|+|.... ..|.|.+|....++| |.++ ..+++++
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~ 145 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHS 145 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 68899999999998888888888999887543 356677776655544 2222 1222222
Q ss_pred -------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 197 -------------DLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 197 -------------~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.+.+. +-.|++|+..|++.+.-+|+.-..-.++|..|.+..=++-+.
T Consensus 146 ~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 146 SLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred HHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH
Confidence 22222 235778888888888777776655556666666665555444
No 249
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.62 E-value=0.031 Score=35.25 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
.++.++|.++.. +|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 456777777655 67777777777777765
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.60 E-value=0.054 Score=54.35 Aligned_cols=90 Identities=21% Similarity=0.103 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~--~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~ 211 (266)
.....|+.+|-++++..|.....+.|+|.++.. ..++.-.|+.-+..|+++||....+|+.++.++.+ .+++.+|+.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~ 466 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALS 466 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhh
Confidence 467789999999999999999999999887743 23677889999999999999999999999999977 578999999
Q ss_pred HHHHHHHhCCCCH
Q 024536 212 YFDRAVHSAPDDC 224 (266)
Q Consensus 212 ~~ekAL~l~P~da 224 (266)
+...+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 9999888888543
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.56 E-value=0.15 Score=50.81 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC-----
Q 024536 134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILA-KPGDGNVLSMYGDLIWINHKD----- 205 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~--~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l-dP~da~al~nla~ll~~~~gd----- 205 (266)
|+.++|++.|+..++.+|. +-.++.|+-..|. ..+.|+++.+.+.+-=.+ -|..+...+.-|.+..+..+|
T Consensus 273 Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e 351 (539)
T PF04184_consen 273 GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE 351 (539)
T ss_pred CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch
Confidence 7889999999999998886 4568899988876 478999999988885333 267788777776554443333
Q ss_pred ----------HHHHHHHHHHHHHhCCCCHHH
Q 024536 206 ----------APRAKSYFDRAVHSAPDDCHV 226 (266)
Q Consensus 206 ----------~deAi~~~ekAL~l~P~da~a 226 (266)
...|++.+.||++.||.-+.+
T Consensus 352 ~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 352 AASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 134678999999999986543
No 252
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.51 E-value=0.39 Score=42.75 Aligned_cols=101 Identities=22% Similarity=0.213 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHH----CCCC---HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHH
Q 024536 134 KESESMDVYYQEMIKA----YPED---ALVLANYAKFLKEIRGD-------FVKAEEYCGRAILAKPG------DGNVLS 193 (266)
Q Consensus 134 ~~~eeA~~~y~rALel----~P~~---~~al~nlA~~L~~~~gd-------~e~A~~~~erAL~ldP~------da~al~ 193 (266)
..+++|++.|.-||-. ...+ +.++..+|+++. ..++ +.+|...|++|+..... ...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 5789999999888654 2222 456677888765 3565 46788888888876532 246777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 024536 194 MYGDLIWINHKDAPRAKSYFDRAVHSAPDDC-HVLASYARFLWD 236 (266)
Q Consensus 194 nla~ll~~~~gd~deAi~~~ekAL~l~P~da-~a~~~lA~ll~~ 236 (266)
.+|.+..+ .|++++|+.+|.+++...-... ..+..+|.=+|+
T Consensus 170 LigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 170 LIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 88887766 7999999999999998654333 366677766654
No 253
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.062 Score=51.16 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA 209 (266)
++|..|+..|-+.|+..-.|+ .+|.|.|.+-+ ..|+|-.|+.-+.+|+.++|.+..+++.-|.+++++ .++++|
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL-e~~~~a 172 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL-ERFAEA 172 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH-HHHHHH
Confidence 789999999999999976665 45677765544 358899999999999999999999999988888874 577777
Q ss_pred HHHHHHHHHhCC
Q 024536 210 KSYFDRAVHSAP 221 (266)
Q Consensus 210 i~~~ekAL~l~P 221 (266)
..+++..+.++-
T Consensus 173 ~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 173 VNWCEEGLQIDD 184 (390)
T ss_pred HHHHhhhhhhhH
Confidence 777776665543
No 254
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.41 E-value=0.083 Score=37.00 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536 156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (266)
Q Consensus 156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla 196 (266)
.++.+|...+ ..|+|++|..+.+++|+.+|+|..+.....
T Consensus 3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4566666665 589999999999999999999999876444
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.24 E-value=0.32 Score=44.51 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------
Q 024536 134 KESESMDVYYQEMIKAYPE----DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---------------------- 187 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~----~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~---------------------- 187 (266)
+.++.|..++.++...++. .+.+.+.++.+++ ..|+..+|...++..+.....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI 238 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence 5788999999999987632 5678888899887 589999999999988881111
Q ss_pred ------------CHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 024536 188 ------------DGNVLSMYGDLIWIN-----HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242 (266)
Q Consensus 188 ------------da~al~nla~ll~~~-----~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~e 242 (266)
-+.++..+|.+.... ..+.++++.+|++|+.++|....+++.+|.++...-+.+.
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence 124555566655442 2789999999999999999999999999988887755444
No 256
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.21 E-value=0.0075 Score=59.32 Aligned_cols=76 Identities=13% Similarity=-0.028 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.++++.|...|-+||+++|+++..+.+.+.++.. .+++..|+.-+.+||+++|....++..-|.+....+++.+|.
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 5789999999999999999999999998876665 789999999999999999998877666666666666666665
No 257
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.18 E-value=0.0056 Score=58.16 Aligned_cols=77 Identities=19% Similarity=0.084 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
..|.++.|++.|-+||.++|..+..|...+.++.. .++..+|+.-|..|++++|+.+.-+-.-+.+...+|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 36889999999999999999999999999999877 577999999999999999998765444455555566666665
No 258
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.15 E-value=0.18 Score=55.40 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHH-CCCCH-------HHHHHHHHHH-----------------------------HHHcCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKA-YPEDA-------LVLANYAKFL-----------------------------KEIRGDFVKAEE 176 (266)
Q Consensus 134 ~~~eeA~~~y~rALel-~P~~~-------~al~nlA~~L-----------------------------~~~~gd~e~A~~ 176 (266)
.+.++|.+.+++||.. |+... .++.||=.++ |+.-..+++|.+
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~e 1551 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADE 1551 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHH
Confidence 7889999999999864 45432 3334432211 112345678888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcccccccccc
Q 024536 177 YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD--DCHVLASYARFLWDAGEEEDDDDGDDQ 249 (266)
Q Consensus 177 ~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~~~~~ 249 (266)
+|++.++.--+...+|..|+.+++. +.+.++|..++++|+.--|. +.......|.+-+..|+.+.+....|.
T Consensus 1552 ll~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1552 LLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence 8888888877888888888888876 66778888888888888887 666777888888888888887655443
No 259
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.12 Score=47.25 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHH
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNV------LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH------VLASYARFLW 235 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~a------l~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~------a~~~lA~ll~ 235 (266)
..+.++|..++++||++--+-... +..+|.+|..-..|+++|+.+|++|-+.-..+-. .+.-.|.+-.
T Consensus 86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 457778888888888775443322 2245655543236789999999998876554321 2334455556
Q ss_pred HcCCccccccccc
Q 024536 236 DAGEEEDDDDGDD 248 (266)
Q Consensus 236 ~~G~~~eA~~~~~ 248 (266)
..+++..|+++.|
T Consensus 166 ~leqY~~Ai~iye 178 (288)
T KOG1586|consen 166 QLEQYSKAIDIYE 178 (288)
T ss_pred HHHHHHHHHHHHH
Confidence 6678888886643
No 260
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.097 Score=48.26 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536 156 VLANYAKFLKEIRGDFVKAEEYCGRAIL--------AKPGDGN----------VLSMYGDLIWINHKDAPRAKSYFDRAV 217 (266)
Q Consensus 156 al~nlA~~L~~~~gd~e~A~~~~erAL~--------ldP~da~----------al~nla~ll~~~~gd~deAi~~~ekAL 217 (266)
++..-|+-|+ ..|+|++|...|+.||. -.|.+++ .+.||..++.. .++|=++++++...+
T Consensus 180 ~l~q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL 257 (329)
T KOG0545|consen 180 VLHQEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHH
Confidence 3344454455 47899999999999976 3466654 46788888876 799999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 218 HSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 218 ~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
...|.+.-|++.-|.+....=+.++|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~ 284 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAK 284 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHH
Confidence 999999999999999888887777776
No 261
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.12 Score=48.23 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHHC----C--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAY----P--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~----P--~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~d 207 (266)
||.+.|..+|+++-+.+ - .+-.++.|.+.++. ..+++..|...|.+.+..||.++.+.++-|.++.- .|+..
T Consensus 226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-lg~l~ 303 (366)
T KOG2796|consen 226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-LGKLK 303 (366)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHH-HHHHH
Confidence 68888999999554332 2 23356666665443 57899999999999999999999999999987754 78999
Q ss_pred HHHHHHHHHHHhCCCCH
Q 024536 208 RAKSYFDRAVHSAPDDC 224 (266)
Q Consensus 208 eAi~~~ekAL~l~P~da 224 (266)
.|++..++++...|...
T Consensus 304 DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHhccCCccc
Confidence 99999999999999754
No 262
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.04 E-value=0.31 Score=43.31 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcccc
Q 024536 169 GDFVKAEEYCGRAILA-KPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD----CHVLASYARFLWDAGEEEDD 243 (266)
Q Consensus 169 gd~e~A~~~~erAL~l-dP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d----a~a~~~lA~ll~~~G~~~eA 243 (266)
|| ++|.+-|-++-.. .=++++..+.+|.+|. +.|.++|+.++-+++++.+.+ ++++..||.++...++++.|
T Consensus 121 ~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GD-QEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred Cc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 54 6676666554332 2368899999998764 579999999999999998754 88999999999999998876
No 263
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.054 Score=51.20 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 169 GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 169 gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.+|++|+++..--.+.+|.+-..+..+|.+|+. ..+|..|..+|++.-.+.|........+|.-+++++.+.+|.
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 334444444444444444444444444444444 234444555555554444544444444444444444444444
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.95 E-value=0.14 Score=49.51 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 024536 132 SGKESESMDVYYQE-MIKAYPEDALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202 (266)
Q Consensus 132 ~~~~~eeA~~~y~r-ALel~P~~~~al~nlA~~L~~~--------~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~ 202 (266)
..|+.++|+..+.. .....+.+++.+..+|.++... ...+++|..+|+++.+++|+. ..-.|++.++..
T Consensus 194 ~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~- 271 (374)
T PF13281_consen 194 KPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML- 271 (374)
T ss_pred cCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH-
Confidence 34788999999988 5666778899999999876431 224789999999999999754 444567766644
Q ss_pred cCCHHHHH-HHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCcccccccccccccCCCCCC
Q 024536 203 HKDAPRAK-SYFDRAVHS-----------APDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNI 258 (266)
Q Consensus 203 ~gd~deAi-~~~ekAL~l-----------~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~~~ 258 (266)
.|...+.. ++-+-.+.+ .-.+-+.+..++.+..-.++.+.|++-.+++-.+.||.+
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 44322222 211111111 113445566777778888888888876666555556554
No 265
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.90 E-value=0.24 Score=40.00 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHc---C-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIR---G-------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIW 200 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~---g-------d~e~A~~~~erAL~ldP~da~al~nla~ll~ 200 (266)
|++-+|++..+..+..++++. .++..-|.+++... . -+-.|.++|.+++.+.|+.+..++.+|.-+-
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLG 89 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhh
Confidence 688999999999999999887 44455565553211 1 1356888999999999999888888886542
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 024536 201 INHKDAPRAKSYFDRAVHSA 220 (266)
Q Consensus 201 ~~~gd~deAi~~~ekAL~l~ 220 (266)
- ...|+++....+++|.+.
T Consensus 90 s-~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 90 S-VKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred h-HHHHHHHHHHHHHHhccc
Confidence 2 345788888888887653
No 266
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.24 Score=45.39 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALV------LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG------NVLSMYGDLIWI 201 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~a------l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da------~al~nla~ll~~ 201 (266)
.+.++|..++++||++..+-..+ +..+|.++.....++++|+.+|++|-+---.+- ..+.-.|.+..+
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 46778888888888887654432 335676664344789999999999988644332 123333433333
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536 202 NHKDAPRAKSYFDRAVHSAPDDCHV 226 (266)
Q Consensus 202 ~~gd~deAi~~~ekAL~l~P~da~a 226 (266)
.++|.+|+..|++.....-++.-.
T Consensus 167 -leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 167 -LEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred -HHHHHHHHHHHHHHHHHhccchHH
Confidence 578999999999999988887654
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.80 E-value=0.22 Score=50.20 Aligned_cols=100 Identities=16% Similarity=0.092 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 131 DSGKESESMDVYYQEMIK-----AYPEDALVLANYAKFLKEI---RG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALe-----l~P~~~~al~nlA~~L~~~---~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~ 201 (266)
+...+.++|+.+|++|.+ +.-.++.+.+.+|.++... .. +++.|..+|.+|-..... .+.+.+|.++..
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~--~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP--DAQYLLGVLYET 337 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc--hHHHHHHHHHHc
Confidence 344788999999988877 1112555666677665421 12 567777777777666543 344455655544
Q ss_pred Hc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536 202 NH--KDAPRAKSYFDRAVHSAPDDCHVLASYARFL 234 (266)
Q Consensus 202 ~~--gd~deAi~~~ekAL~l~P~da~a~~~lA~ll 234 (266)
.. .|+.+|..||.+|... .+..+...+|.++
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y 370 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKA--GHILAIYRLALCY 370 (552)
T ss_pred CCccccHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 22 3456777777766654 3444555555433
No 268
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.77 E-value=0.13 Score=52.64 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-H-cCCHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWI-N-HKDAPRA 209 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~da~al~nla~ll~~-~-~gd~deA 209 (266)
+-++...+.|.++|.+.--.|.+..|||.+|. ...-+++|.+.|+|.|.+- |+--++|..|-..... . ....++|
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 56788889999999999999999999999885 4677899999999999984 6666777776543322 1 2468999
Q ss_pred HHHHHHHHHhCCCC-H-HHHHHHHHHHHHcCCccccccc
Q 024536 210 KSYFDRAVHSAPDD-C-HVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 210 i~~~ekAL~l~P~d-a-~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
..+|++||+..|.. + .++..||.+--+.|-...|+.+
T Consensus 570 RdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 570 RDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999832 2 2455666666666655555544
No 269
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.73 E-value=0.081 Score=33.24 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (266)
Q Consensus 154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~l 184 (266)
+.++.++|.++. ..|++++|+.++++|+.+
T Consensus 2 a~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYR-AQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence 457899999886 589999999999999985
No 270
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.18 Score=51.03 Aligned_cols=108 Identities=12% Similarity=0.019 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANY--AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nl--A~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
-.-|+..|..-+.++|.++.++... ...+ ...++...|...+..++..+|+++.++.+++..+...+..+..+..+.
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILL-APLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhc-cccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3446677777788999999875443 4333 245777889999999999999999999999988877666677777788
Q ss_pred HHHHHhCCCCHHHHHHH------HHHHHHcCCccccc
Q 024536 214 DRAVHSAPDDCHVLASY------ARFLWDAGEEEDDD 244 (266)
Q Consensus 214 ekAL~l~P~da~a~~~l------A~ll~~~G~~~eA~ 244 (266)
+.|....|++.+++..+ +.++..+++..++.
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAE 162 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHH
Confidence 88999999999987777 66666667666665
No 271
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.087 Score=50.18 Aligned_cols=83 Identities=11% Similarity=-0.027 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536 160 YAKFLKEIRGDFVKAEEYCGRAILAKPGDG----NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235 (266)
Q Consensus 160 lA~~L~~~~gd~e~A~~~~erAL~ldP~da----~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~ 235 (266)
=|+.++ ..++|..|..+|-++|+..-.|+ ..|.|.|.+-+. .|+|-.|+.-+.+|+.++|.+.-++..-|.+++
T Consensus 87 eGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 366665 46889999999999999876554 457777776655 689999999999999999999999999999999
Q ss_pred HcCCccccc
Q 024536 236 DAGEEEDDD 244 (266)
Q Consensus 236 ~~G~~~eA~ 244 (266)
+..++++|.
T Consensus 165 eLe~~~~a~ 173 (390)
T KOG0551|consen 165 ELERFAEAV 173 (390)
T ss_pred HHHHHHHHH
Confidence 999987777
No 272
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.58 E-value=0.14 Score=45.74 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201 (266)
Q Consensus 139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~ 201 (266)
|+.+|++|+.+.|++...|+++|.+.. ..++.=.|.-+|-|++...--.+.+..|+..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999998765 57999999999999998765568899999877654
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.52 E-value=0.61 Score=47.05 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAPRA 209 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~--gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~---~gd~deA 209 (266)
+.+.|..+|.+|.+.. ++.+.+.+|.++.... .|+.+|..+|.+|... .+..++++++.++..- ..+..+|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 8999999999998875 4556677777664323 4678999999999764 6778888999877532 2489999
Q ss_pred HHHHHHHHHhCC
Q 024536 210 KSYFDRAVHSAP 221 (266)
Q Consensus 210 i~~~ekAL~l~P 221 (266)
..||++|.+..+
T Consensus 384 ~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 384 FAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHccC
Confidence 999999999983
No 274
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.42 E-value=0.068 Score=53.69 Aligned_cols=90 Identities=14% Similarity=-0.042 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 169 GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN--HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 169 gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~--~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
.....|+..|.+|+...|+....+.|++.++++. .+|.-.|+.-+..|++++|-.-.+++.|+.++.+.+++.+|++-
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 4467899999999999999999999999877542 47888899999999999999999999999999999999999976
Q ss_pred ccccccCCCCCC
Q 024536 247 DDQETCASQPNI 258 (266)
Q Consensus 247 ~~~~~~~~~~~~ 258 (266)
-....+.+|.++
T Consensus 468 ~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 468 HWALQMSFPTDV 479 (758)
T ss_pred HHHHhhcCchhh
Confidence 555555555444
No 275
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.31 E-value=0.41 Score=49.21 Aligned_cols=121 Identities=18% Similarity=0.171 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHH
Q 024536 134 KESESMDVYYQEMIKAYPED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------------------DGNV 191 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~----~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~------------------da~a 191 (266)
++.+.|...|.+|++.+=.. +.+|.++|.+-. ...+++.|.++.++|...--. ...+
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl-rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL-RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 57889999999998886443 467788886543 457789999999998876322 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536 192 LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP 256 (266)
Q Consensus 192 l~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~ 256 (266)
|..|+.+. +.-|-++.....|++.|++.--.|++..|||.+|-+..-++++-+.-|..-.++++
T Consensus 480 Ws~y~Dle-Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 480 WSMYADLE-ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHHHHHHH-HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 66777655 44678888889999999999889999999999888888888888776665555544
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=0.37 Score=44.42 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHH
Q 024536 132 SGKESESMDVYYQEMIKAYPEDALVL------ANYAKFLKEIRGDFVKAEEYCGRAILAK-----PGDG-NVLSMYGDLI 199 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~~~al------~nlA~~L~~~~gd~e~A~~~~erAL~ld-----P~da-~al~nla~ll 199 (266)
+-+++++|..++.+|++..-+|...| -..+.++. ....+.++..+|++|..+- |+-+ .++-..|.++
T Consensus 43 nAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l 121 (308)
T KOG1585|consen 43 NAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL 121 (308)
T ss_pred hhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 34789999999999997766654333 22233333 4577899999999999864 4433 3444455555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCccccc
Q 024536 200 WINHKDAPRAKSYFDRAVHSAPDDCH------VLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 200 ~~~~gd~deAi~~~ekAL~l~P~da~------a~~~lA~ll~~~G~~~eA~ 244 (266)
+ ..+.++|+++|++++++--++-+ .+...+++|....+++||.
T Consensus 122 -e-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 122 -E-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred -h-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 3 46899999999999988665433 3556778888888888886
No 277
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.25 E-value=0.76 Score=45.97 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ 197 (266)
+.+--..|.++|..+|+++.+|..-|...++..-..+.|.++|.++|+.+|+++..|.-|-.
T Consensus 121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 56667799999999999999999999888876666999999999999999999999876654
No 278
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.27 Score=47.54 Aligned_cols=81 Identities=11% Similarity=-0.027 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
.+|+-|+.+++-++..+-... .+-..+|.+.+ ..|||++|...|+-+...+--+++.+.++|.+.+- .|.|.+|...
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHH
Confidence 788999999988886665544 22233344444 46999999999999999887788999999987765 6889999887
Q ss_pred HHHH
Q 024536 213 FDRA 216 (266)
Q Consensus 213 ~ekA 216 (266)
-.+|
T Consensus 114 ~~ka 117 (557)
T KOG3785|consen 114 AEKA 117 (557)
T ss_pred HhhC
Confidence 6665
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.14 E-value=0.14 Score=49.57 Aligned_cols=111 Identities=19% Similarity=0.022 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--G----NVLSMYGDLIWIN 202 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~-----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d--a----~al~nla~ll~~~ 202 (266)
.++.+++.+.+-.+.+.-..+ .++..++.+.. ..+-+++++++|+.|+.+.-++ + .++..++.++.+
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~- 174 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ- 174 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-
Confidence 455566666655555533332 34444554432 3567899999999999986543 3 467778887766
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCccccccc
Q 024536 203 HKDAPRAKSYFDRAVHSAPDD----------CHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~P~d----------a~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
.+|+++|.-+..+|.++-... +.+++.++..|..+|+.-+|.+-
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~ 228 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMEC 228 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 579999999999999986532 34678899999999999988753
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.11 E-value=0.31 Score=41.43 Aligned_cols=85 Identities=9% Similarity=0.001 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
.++++++.++..+--+.|+.+.+..--|++.. ..|++.+|...++......+..+.+...++.+++. .+|.+- ..+-
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~W-r~~A 100 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAEW-HVHA 100 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChHH-HHHH
Confidence 57788888888888888999888887777554 67889999999999988888888888888887765 676543 4455
Q ss_pred HHHHHhCC
Q 024536 214 DRAVHSAP 221 (266)
Q Consensus 214 ekAL~l~P 221 (266)
+.+++.++
T Consensus 101 ~~~le~~~ 108 (153)
T TIGR02561 101 DEVLARDA 108 (153)
T ss_pred HHHHHhCC
Confidence 55555544
No 281
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=0.47 Score=42.11 Aligned_cols=87 Identities=11% Similarity=0.136 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi 210 (266)
+++++|+..++.++..--+.- .+-.++|.++. ..+.+++|+..+.....-+- .+...-..|.++.. +||-++|+
T Consensus 103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~-kg~k~~Ar 179 (207)
T COG2976 103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEESW-AAIVAELRGDILLA-KGDKQEAR 179 (207)
T ss_pred ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHH-cCchHHHH
Confidence 566777777777665433322 23345566655 35666766665554332211 12223345666654 67777777
Q ss_pred HHHHHHHHhCCCC
Q 024536 211 SYFDRAVHSAPDD 223 (266)
Q Consensus 211 ~~~ekAL~l~P~d 223 (266)
.-|++|+...+..
T Consensus 180 ~ay~kAl~~~~s~ 192 (207)
T COG2976 180 AAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHccCCh
Confidence 7777777776443
No 282
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=0.62 Score=46.58 Aligned_cols=114 Identities=12% Similarity=-0.004 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHH
Q 024536 132 SGKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAK---PGDG----NVLSMYGDLIWI 201 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ld---P~da----~al~nla~ll~~ 201 (266)
.+..+.+++++++..+...|.+- ..+..+|.+|+....+++.|...+++|+.+- |..- +++..++.++.+
T Consensus 21 ~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~ 100 (629)
T KOG2300|consen 21 GPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQ 100 (629)
T ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHH
Confidence 34688999999999999988764 4567788888777899999999999999875 4432 345567777766
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCcccccc
Q 024536 202 NHKDAPRAKSYFDRAVHSAPDDCHV----LASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 202 ~~gd~deAi~~~ekAL~l~P~da~a----~~~lA~ll~~~G~~~eA~~ 245 (266)
....+..|...+++||++.-..+.+ .+.+|.++.-..++.-|.+
T Consensus 101 ~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~e 148 (629)
T KOG2300|consen 101 LAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALE 148 (629)
T ss_pred hcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHH
Confidence 6668999999999999999988764 5678888888888887774
No 283
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.76 Score=44.84 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD---APRAKS 211 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd---~deAi~ 211 (266)
.++-+.+...+|+.+|+..-+|+...++|...-. ++..-++++++++++||-+-.+|...=.+.-+.+.. ..+=++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 4556778899999999999999999998853222 478999999999999999888876544444333333 677789
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLW 235 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~ 235 (266)
+..++|.-++.|-.+|++-..++-
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHH
Confidence 999999999999999988777665
No 284
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.64 E-value=1.1 Score=43.85 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCCHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI-WINHKDAPRAKS 211 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~--~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll-~~~~gd~deAi~ 211 (266)
+-..|.+.-+++-.+--.+ +.++..-+..-. ..|+++.|.+-|+..+. +|.--. +...|.++ .+..|+.+.|+.
T Consensus 99 da~lARkmt~~~~~llssDqepLIhlLeAQaal-~eG~~~~Ar~kfeAMl~-dPEtRl-lGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 99 DASLARKMTARASKLLSSDQEPLIHLLEAQAAL-LEGDYEDARKKFEAMLD-DPETRL-LGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred chHHHHHHHHHHHhhhhccchHHHHHHHHHHHH-hcCchHHHHHHHHHHhc-ChHHHH-HhHHHHHHHHHhcccHHHHHH
Confidence 3366777777776443333 344444444332 57999999999987764 444222 11122211 234689999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
|-++|-...|.-++++...-..++..|++++|++
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 9999999999999998888888999999999995
No 285
>PRK10941 hypothetical protein; Provisional
Probab=93.36 E-value=0.59 Score=43.17 Aligned_cols=61 Identities=13% Similarity=-0.048 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nl 195 (266)
+++++|+++.++++.++|+++.-+.-.|.++. ..+.+..|..-++.-|+.-|+++.+...-
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 89999999999999999999999999998775 68999999999999999999999876543
No 286
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.22 E-value=0.26 Score=28.99 Aligned_cols=29 Identities=31% Similarity=0.622 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536 205 DAPRAKSYFDRAVHSAPDDCHVLASYARF 233 (266)
Q Consensus 205 d~deAi~~~ekAL~l~P~da~a~~~lA~l 233 (266)
+.++|..+|++++...|.++.+|..++.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44555555555555555555555555443
No 287
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.22 E-value=0.46 Score=50.22 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHHC-------------------CCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHH--------
Q 024536 134 KESESMDVYYQEMIKAY-------------------PED-----ALVLANYAKFLKEIRGDFVKAEEYCGRA-------- 181 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~-------------------P~~-----~~al~nlA~~L~~~~gd~e~A~~~~erA-------- 181 (266)
+-+++|+.+|++.-+.| -.. -..|+|||..|. ..+|.+.|++||+++
T Consensus 814 gMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~ 892 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVF 892 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHH
Confidence 66788888887654332 111 246788888775 589999999999875
Q ss_pred --HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHH
Q 024536 182 --ILAKP----------GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH---------------------SAPDDCHVLA 228 (266)
Q Consensus 182 --L~ldP----------~da~al~nla~ll~~~~gd~deAi~~~ekAL~---------------------l~P~da~a~~ 228 (266)
|.-+| .|+..|.+.|.++ +..|+.|.|+.+|..|-. ....|-.+.+
T Consensus 893 rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcY 971 (1416)
T KOG3617|consen 893 RMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACY 971 (1416)
T ss_pred HHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHH
Confidence 33344 3455666677655 568999999999987632 2334555666
Q ss_pred HHHHHHHHcCCccccc
Q 024536 229 SYARFLWDAGEEEDDD 244 (266)
Q Consensus 229 ~lA~ll~~~G~~~eA~ 244 (266)
.+|+.|-..|+..+|+
T Consensus 972 hlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAV 987 (1416)
T ss_pred HHHHHhhhhHHHHHHH
Confidence 6777777777766666
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.20 E-value=1.3 Score=45.04 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-PGDGNVLSMYGDLIWINHKDAPRAKS 211 (266)
Q Consensus 133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld-P~da~al~nla~ll~~~~gd~deAi~ 211 (266)
.++++....+|++++.---...++|.+|+..+. ..|+.+-|...+.+|.++. |.-+..+..++.+- +..|+++.|..
T Consensus 310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~-e~~~n~~~A~~ 387 (577)
T KOG1258|consen 310 LGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFE-ESNGNFDDAKV 387 (577)
T ss_pred cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH-HhhccHHHHHH
Confidence 378899999999999999999999999999876 4699999998888888874 77778887777665 56899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
++++...--|+...+..-.+......|..+.+.
T Consensus 388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 999999999999988888888888888888877
No 289
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.05 E-value=0.22 Score=50.68 Aligned_cols=105 Identities=13% Similarity=0.057 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN--VLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 138 eA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~--al~nla~ll~~~~gd~deAi~~~ek 215 (266)
.-..+.-.+++.+|.++.+|+.-+ +++..+|+.-+|..|+.+|+...|.+.. ++..+|.++.+ .|...+|--++..
T Consensus 197 ~~~~~~~~glq~~~~sw~lH~~as-~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILhA 274 (886)
T KOG4507|consen 197 DIGHLIHEGLQKNTSSWVLHNMAS-FYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILHA 274 (886)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHH-HHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheeeh
Confidence 334466778888888887765544 5566788888899999998888877653 56667877765 7888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 216 AVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 216 AL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
|+.-.|.-+.-++.++.++...+++-.-.
T Consensus 275 A~~dA~~~t~n~y~l~~i~aml~~~N~S~ 303 (886)
T KOG4507|consen 275 ALDDADFFTSNYYTLGNIYAMLGEYNHSV 303 (886)
T ss_pred hccCCccccccceeHHHHHHHHhhhhhhh
Confidence 88888877666777777777776654433
No 290
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.43 Score=44.10 Aligned_cols=60 Identities=17% Similarity=-0.020 Sum_probs=55.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL 227 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~ 227 (266)
..++++.|..+.++.+.++|+++.-+.-.|.+|.+ .+.+.-|+.-++..++.-|+++.+-
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHH
Confidence 57889999999999999999999999999998877 6889999999999999999998764
No 291
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.88 E-value=1.8 Score=41.48 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=66.3
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----CC------------CCHH---HHHHHH
Q 024536 146 MIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL---------A-----KP------------GDGN---VLSMYG 196 (266)
Q Consensus 146 ALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~---------l-----dP------------~da~---al~nla 196 (266)
.|+.+|-+.+.+..++.++. .+||++.|.++.+|||- . ++ .|-. +++.+.
T Consensus 32 ll~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 35678889999999998876 58999999888888864 1 22 2222 233444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCCccccc
Q 024536 197 DLIWINHKDAPRAKSYFDRAVHSAPD-DCHVLASYA-RFLWDAGEEEDDD 244 (266)
Q Consensus 197 ~ll~~~~gd~deAi~~~ekAL~l~P~-da~a~~~lA-~ll~~~G~~~eA~ 244 (266)
..+.+ +|-+..|.++++-.+.+||. |+......- .+....++++--+
T Consensus 111 ~~L~~-RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li 159 (360)
T PF04910_consen 111 QSLGR-RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLI 159 (360)
T ss_pred HHHHh-cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHH
Confidence 44444 79999999999999999998 886533333 3344445554344
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.85 E-value=1.9 Score=36.72 Aligned_cols=72 Identities=17% Similarity=0.047 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEE 240 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~ 240 (266)
..+.++++..+...--+.|+.+++...-|+++.. +|++++|+.+|+...+-.+..+.....++.++.-.|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 6889999999999999999999999888887765 89999999999999999999888777788777777764
No 293
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.71 E-value=1.1 Score=34.32 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=40.0
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536 167 IRGDFVKAEEYCGRAILAKP----GD-----GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP----~d-----a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~ 222 (266)
..+||.+|.+.+.+.+.... .. ..++.++|.+... .|++++|+..++.||.+...
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHH
Confidence 36888888666666665432 22 4566778877665 79999999999999998763
No 294
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.60 E-value=1.3 Score=46.99 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
+..++|..+++..-...+++-..+-.+-.++. ..+.+++|..+|++|+..+|+ -+.++.+-.++.+ .++|.+-.+.-
T Consensus 57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~qQkaa 133 (932)
T KOG2053|consen 57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKKQQKAA 133 (932)
T ss_pred cCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45578887777777777777777777776665 579999999999999999999 6666666666544 34444333333
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDA 237 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~ 237 (266)
-+.-+..|.+++.+.+...++.+.
T Consensus 134 ~~LyK~~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 134 LQLYKNFPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHhCCcccchHHHHHHHHHHh
Confidence 333337899888765555554443
No 295
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.58 E-value=0.37 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKF 163 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~ 163 (266)
+.++|...|++++...|.++.+|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34555666666666666666666555543
No 296
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.46 E-value=1.4 Score=43.19 Aligned_cols=104 Identities=18% Similarity=0.093 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
-+...|...-.+++++.|+...+-..-+..|. ..|+..++-.+++.+.+..|. |.++..|- ..+ .| |.++.-+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf-~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~--~ar-~g--dta~dRl 315 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALF-RDGNLRKGSKILETAWKAEPH-PDIALLYV--RAR-SG--DTALDRL 315 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHH-hccchhhhhhHHHHHHhcCCC-hHHHHHHH--Hhc-CC--CcHHHHH
Confidence 35778888999999999999988877787776 479999999999999999995 55554443 222 34 3344444
Q ss_pred H---HHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 214 D---RAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 214 e---kAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+ +...+.||+.+.....+..-+..|++..|.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 4 445667899998888888888888887665
No 297
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.13 E-value=3.1 Score=34.55 Aligned_cols=84 Identities=14% Similarity=0.052 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHH--
Q 024536 134 KESESMDVYYQEMIKAYPE------------DALVLANYAKFLKEIRGDFVKAEEYCGRAIL-------AKPGDGNVL-- 192 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~------------~~~al~nlA~~L~~~~gd~e~A~~~~erAL~-------ldP~da~al-- 192 (266)
+.|++|.+-|++|+++.-. ++..|..|+..+. ..|+|++++...++||. ++-+....|
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 5689999999999988533 2345556666664 47888777666666664 555555443
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 193 --SMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 193 --~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
++.+..+.. .|+.++|+..|++|.+.
T Consensus 102 aVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 344555533 78999999999988764
No 298
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.89 E-value=0.2 Score=47.68 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ 197 (266)
-+.+--..|.+++..+|.|+++|...+.+-+...++++.|.++|.++|+.+|++|..|+.|-.
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 556666788999999999999998866655556799999999999999999999999987654
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.35 E-value=2.4 Score=38.74 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHHH
Q 024536 155 LVLANYAKFLKEI-----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK----------------DAPRAKSYF 213 (266)
Q Consensus 155 ~al~nlA~~L~~~-----~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g----------------d~deAi~~~ 213 (266)
.++..+|.+.... .+..+++..+|++|+.++|....+|+.+|.++...-. -...|+.+|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 4555566655432 2788999999999999999999999999977644311 124589999
Q ss_pred HHHHHhCCC
Q 024536 214 DRAVHSAPD 222 (266)
Q Consensus 214 ekAL~l~P~ 222 (266)
-+|+.+.+.
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 999999988
No 300
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.11 E-value=0.77 Score=29.50 Aligned_cols=33 Identities=6% Similarity=-0.048 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSY--FDRAVHSAPDD 223 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~--~ekAL~l~P~d 223 (266)
+.++.+|..++. +|++++|+.+ |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 345566666554 6777777777 44777766654
No 301
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.07 E-value=2 Score=43.48 Aligned_cols=112 Identities=18% Similarity=0.244 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e 214 (266)
+++--.+|++++.+.-.++ .+|.+|-.+.....| ++.|...|.+|-+..-.-..++...|.+-+...+|.+-|...|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG-lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG-LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh-HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 4555556777766654444 355555555443333 67788888888776544445555555444555788888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536 215 RAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 215 kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
-.++.-+|.+.....|..+|...++...|...+|
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHH
Confidence 8888888888888888888888888777765544
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.75 E-value=0.31 Score=28.61 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 024536 191 VLSMYGDLIWINHKDAPRAKSYFD 214 (266)
Q Consensus 191 al~nla~ll~~~~gd~deAi~~~e 214 (266)
++.++|.+++. .||+++|+..++
T Consensus 3 a~~~la~~~~~-~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLA-QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHh
Confidence 44555555554 566666665554
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.67 E-value=1.2 Score=39.56 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 024536 137 ESMDVYYQEMIKA-YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----DGNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 137 eeA~~~y~rALel-~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~----da~al~nla~ll~~~~gd~deAi 210 (266)
++|..-|-++-.. .=+++.+.+.+|.++ ...|.++|..++-+||++.+. |++++..++.+++. +++++.|=
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY--~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY--TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhh
Confidence 4454444333221 125788899999876 378999999999999998654 48999999998876 78888773
No 304
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.62 E-value=3.8 Score=40.88 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek 215 (266)
+|+|.++.-|..-..+++| .+.++..+|.+++. .++|++|-.++..
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHh
Confidence 4555555555555555555 55555555555554 4455555555543
No 305
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.51 E-value=6.4 Score=40.12 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-----G-DGNVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP-----~-da~al~nla~ll~~~~gd~d 207 (266)
++++.|..+|++..+.-|+...+-.....+.+ .++..+.+..+.+-.....+ . ....+..++.+.+...++.+
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~-r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLRKINWER-RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHH-HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHH
Confidence 68899999999999988988887777666665 46777777742222222222 1 13445667778888889999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536 208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239 (266)
Q Consensus 208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~ 239 (266)
.|...+.+|+...|++...+..+-.+...+.-
T Consensus 459 ~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 459 LARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 99999999999999999988888887777663
No 306
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.37 E-value=0.54 Score=47.11 Aligned_cols=107 Identities=11% Similarity=0.056 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHHcCCHHHH
Q 024536 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRA-ILAKPG--------DGNVLSMYGDLIWINHKDAPRA 209 (266)
Q Consensus 139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erA-L~ldP~--------da~al~nla~ll~~~~gd~deA 209 (266)
+..-.+.++.+.-+.+.++..-+.+.| .+|++.+|.+.+... |...|. ..-+|+|+|.+.++ .+.|..+
T Consensus 225 ~krevK~vmn~a~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~ 302 (696)
T KOG2471|consen 225 AKREVKHVMNIAQDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQAS 302 (696)
T ss_pred HHHhhhhhhhhcCCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHH
Confidence 333344455556677777777777776 589999998876542 333444 23456789988887 6889999
Q ss_pred HHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHcCCcccccccc
Q 024536 210 KSYFDRAVH---------SAP---------DDCHVLASYARFLWDAGEEEDDDDGD 247 (266)
Q Consensus 210 i~~~ekAL~---------l~P---------~da~a~~~lA~ll~~~G~~~eA~~~~ 247 (266)
..+|++|++ +.| ...+++++.|..|+..|++-.|-|-.
T Consensus 303 ~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf 358 (696)
T KOG2471|consen 303 SVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCF 358 (696)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHH
Confidence 999999996 122 24568999999999999999887643
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.22 E-value=5.4 Score=36.42 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CCH-------H
Q 024536 134 KESESMDVYYQEMIKAY-PEDA-------LVLANYAKFLKEIRG-DFVKAEEYCGRAILA----KP---GDG-------N 190 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~-P~~~-------~al~nlA~~L~~~~g-d~e~A~~~~erAL~l----dP---~da-------~ 190 (266)
++++.|+.+|.|+-... ..+| ..++|.|.-++ ..+ +++.|..++++|+++ .. ..+ .
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 68899999999997665 3343 45566666555 467 999999999999998 32 222 3
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 191 VLSMYGDLIWIN--HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 191 al~nla~ll~~~--~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
++..++.++... ....++|+.+.+.+-.--|+.+.++.-.-.++...++.+++.+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~ 142 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEE 142 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHH
Confidence 455566666441 1235667777777777778888776544455555555555554
No 308
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=3.1 Score=38.82 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
.+|.++..+|+..+..+ ..-.+|+++-+.+|.++|.+-.+|...-.++..+..+..+-+.++
T Consensus 40 e~fr~~m~YfRAI~~~~------------------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKN------------------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred hhHHHHHHHHHHHHhcc------------------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 57777777777665533 334778888899999999999999887778878788999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 024536 214 DRAVHSAPDDCHVLASYARFLWDAGEEE 241 (266)
Q Consensus 214 ekAL~l~P~da~a~~~lA~ll~~~G~~~ 241 (266)
...++-+|.|-++|+.--.+.-..|+..
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 9999999999999988877777777655
No 309
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.82 E-value=2.3 Score=34.33 Aligned_cols=78 Identities=24% Similarity=0.243 Sum_probs=56.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINHK----------DAPRAKSYFDRAVHSAPDDCHVLASYARF 233 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~---al~nla~ll~~~~g----------d~deAi~~~ekAL~l~P~da~a~~~lA~l 233 (266)
.+|++-+|++..+..+...+++.. .+..-|.+++.+.. -+-.|+++|.+++.+.|+.+..++.+|.=
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 479999999999999999998874 44444555533221 14568999999999999998888888865
Q ss_pred HHHcCCccccc
Q 024536 234 LWDAGEEEDDD 244 (266)
Q Consensus 234 l~~~G~~~eA~ 244 (266)
+--.--++++.
T Consensus 88 l~s~~~Ykk~v 98 (111)
T PF04781_consen 88 LGSVKYYKKAV 98 (111)
T ss_pred hhhHHHHHHHH
Confidence 43333444444
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.74 E-value=2.7 Score=36.10 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD--DCH---- 225 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~--da~---- 225 (266)
.++..+|.++. ..||+++|.++|.++...--... +.+.++-.+... .+|+..+..+..+|-.+--. +..
T Consensus 37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 67788999886 57999999999999888654433 334444444444 68999999999998776543 332
Q ss_pred HHHHHHHHHHHcCCccccccccc
Q 024536 226 VLASYARFLWDAGEEEDDDDGDD 248 (266)
Q Consensus 226 a~~~lA~ll~~~G~~~eA~~~~~ 248 (266)
....-|..+...+++.+|.+..-
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHH
Confidence 24456777888899999997543
No 311
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.67 E-value=2.1 Score=45.49 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHH----------HHHCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Q 024536 134 KESESMDVYYQEM----------IKAYPE----------DALVLANYAKFLKEIRGDFVKAEEYCGRA------------ 181 (266)
Q Consensus 134 ~~~eeA~~~y~rA----------Lel~P~----------~~~al~nlA~~L~~~~gd~e~A~~~~erA------------ 181 (266)
.+.+.|+++|+++ |.-+|. ++.+|..+|.++ +..|+++.|+.+|..|
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAKDYFSMVRIKCI 950 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhhhhhhheeeEee
Confidence 6789999999864 555664 445566667766 4689999999999765
Q ss_pred ---------HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 182 ---------ILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 182 ---------L~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
|+....|-.+.+.+|..|.. .|++.+|+.+|-||-..
T Consensus 951 qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred ccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 33445677788899988755 89999999998887543
No 312
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.87 E-value=5.1 Score=35.76 Aligned_cols=100 Identities=15% Similarity=0.016 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024536 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-- 202 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~----~g--d~e~A~~~~erAL~ldP~da~al~nla~ll~~~-- 202 (266)
|.-.+...|+.+|..|.. -+.+.+-.+++.+++.. .. +.++|++|+.||-.+ ++.++.++|...+...
T Consensus 84 G~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~ 159 (248)
T KOG4014|consen 84 GDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE 159 (248)
T ss_pred CCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccch
Confidence 344688999999999887 56677788888765421 12 378999999999765 4566666666544321
Q ss_pred ---------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 203 ---------------------HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 203 ---------------------~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
.+|.++|.++--+|-+++ ++++.+++.+.|..
T Consensus 160 k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 160 KFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKL 212 (248)
T ss_pred hhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHc
Confidence 147889999999998885 56778888876543
No 313
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.79 E-value=1.3 Score=39.90 Aligned_cols=47 Identities=32% Similarity=0.326 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 137 ESMDVYYQEMIKA-----YPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 137 eeA~~~y~rALel-----~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
++|..+|++|+++ .|.+|. +..|++.|+++..++.++|....++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4555555555442 455552 3345555555555555555555555543
No 314
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=88.72 E-value=3.9 Score=37.27 Aligned_cols=49 Identities=10% Similarity=-0.055 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 171 FVKAEEYCGRAIL-----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 171 ~e~A~~~~erAL~-----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
.++|...|+.|+. +.|.||- ...|++++++...++.++|..+-++|+.-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4689999999987 4588874 35678899999999999999777776654
No 315
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.66 E-value=4.1 Score=41.37 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF 213 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ 213 (266)
.....|...|.+|-+.--.--.++..-|.+-+...+|.+-|.+.|+-.|+.-++++....-|..++.. .++-.-|..+|
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~-lNdd~N~R~LF 458 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH-LNDDNNARALF 458 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCcchhHHHHH
Confidence 45678888888887754433344444444434457999999999999999999999988888888877 57778899999
Q ss_pred HHHHHh--CCCC-HHHHHHHHHHHHHcCCcccccccccccccCCC
Q 024536 214 DRAVHS--APDD-CHVLASYARFLWDAGEEEDDDDGDDQETCASQ 255 (266)
Q Consensus 214 ekAL~l--~P~d-a~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~ 255 (266)
++++.. .|+. .++|...-.+-...|+..-..+...+...++|
T Consensus 459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 459 ERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999998 5543 35677766667777777766655444444444
No 316
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=88.23 E-value=1.8 Score=39.49 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 136 SESMDVYYQEMIKA-----YPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (266)
Q Consensus 136 ~eeA~~~y~rALel-----~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~l 184 (266)
.++|...|+.|+++ .|.||. +..|++.|+++..++.++|....++|+..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999874 588884 55889999999999999999888888763
No 317
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=6.2 Score=38.65 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEI-----------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK 204 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~-----------~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g 204 (266)
.++++++=.+.++.+|+...+|+.--.++... ..-+++-+.+.+.+|..+|++-.+|+...+++...--
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 36788888999999999999987754433221 1234667788999999999999999999998864222
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536 205 -DAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239 (266)
Q Consensus 205 -d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~ 239 (266)
++..-+++++++++.||.+-.+|..-=.+.-.+..
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 37889999999999999998887655544444433
No 318
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.06 E-value=6.8 Score=29.81 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536 134 KESESMDVYYQEMIKAYP----ED-----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG 187 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P----~~-----~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~ 187 (266)
+++.+|.+.+.+...... .. ..++.++|.+.. ..|++++|...+++||++...
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence 577888666666655533 22 456777887655 579999999999999998643
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.61 E-value=4.1 Score=33.82 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=57.4
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Q 024536 156 VLANYAKFLKE-IRGDFVKAEEYCGRAILAKPG------------DGNVLSMYGDLIWINHKDAPRAKSYFDRA------ 216 (266)
Q Consensus 156 al~nlA~~L~~-~~gd~e~A~~~~erAL~ldP~------------da~al~nla~ll~~~~gd~deAi~~~ekA------ 216 (266)
+|..|+..-.+ ..+.|++|..-|++|...... |+.+|..|+.++.. .|+|++++..-++|
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhh
Confidence 44444443221 348899999999999986432 34566677777776 68887765555444
Q ss_pred -HHhCCCCHH----HHHHHHHHHHHcCCcccccc
Q 024536 217 -VHSAPDDCH----VLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 217 -L~l~P~da~----a~~~lA~ll~~~G~~~eA~~ 245 (266)
=+++-+... +.++-|.++-..|+.++|..
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~ 121 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALK 121 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHH
Confidence 456665443 56788899999999999984
No 320
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.57 E-value=3 Score=26.73 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEY--CGRAILAKPGD 188 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~--~erAL~ldP~d 188 (266)
+.++.+|..++ .+|++++|+.+ |+-+..++|.|
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 45677787776 58999999999 55888888765
No 321
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.22 E-value=5.7 Score=37.01 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek 215 (266)
+..=....+++++. ....++..++..+. ..++++.+...+++-+..+|.+-.+|..+-.+++. .|+..+|+..|++
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence 55555555555553 23456666666554 57899999999999999999999988877777765 8999999999998
Q ss_pred HHHh
Q 024536 216 AVHS 219 (266)
Q Consensus 216 AL~l 219 (266)
.-.+
T Consensus 213 l~~~ 216 (280)
T COG3629 213 LKKT 216 (280)
T ss_pred HHHH
Confidence 8773
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.19 E-value=10 Score=33.79 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 168 RGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.+++++|+..++.++...-|.- -+-.++|.++.+ ++.+|+|+..++....-+= .+.+...-|.++...|+.++|.
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar 179 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEAR 179 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHH
Confidence 6899999999999987654432 344567888877 7889999998876543211 1233456788999999999888
No 323
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.05 E-value=5.2 Score=36.50 Aligned_cols=77 Identities=19% Similarity=0.114 Sum_probs=57.2
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC---C-------
Q 024536 167 IRGDFVKAEEYCGRAILAK-PGDG-------NVLSMYGDLIWINHK-DAPRAKSYFDRAVHS----APD---D------- 223 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ld-P~da-------~al~nla~ll~~~~g-d~deAi~~~ekAL~l----~P~---d------- 223 (266)
.+||++.|+.+|.|+-... .-+| ..++++|.-++. ++ +++.|..++++|.++ .+. .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4699999999999998765 3343 456666666655 67 999999999999999 321 1
Q ss_pred HHHHHHHHHHHHHcCCccccc
Q 024536 224 CHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 224 a~a~~~lA~ll~~~G~~~eA~ 244 (266)
..++..++.++.+.+.++..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHH
Confidence 125778899998888776554
No 324
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.98 E-value=5.9 Score=33.91 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (266)
Q Consensus 171 ~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d 223 (266)
.+..++..++.++..| ++.++.+++.++.. .|+.++|..+.+++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence 4566677888888889 58888899988765 899999999999999999944
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.92 E-value=1.2 Score=26.03 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGR 180 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~er 180 (266)
.++.++|.++. ..|++++|+..+++
T Consensus 2 ~a~~~la~~~~-~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALL-AQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence 46788998886 58999999998864
No 326
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=84.90 E-value=3.4 Score=37.26 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 171 FVKAEEYCGRAIL-----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 171 ~e~A~~~~erAL~-----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
.++|..+|++|+. +.|.||- ...|++++++...++.++|+.+.++|+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3788889999887 5788884 45678999999899999999998888764
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.78 E-value=4.7 Score=34.01 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHHHHHH-HCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024536 131 DSGKESESMDVYYQEMIK-AYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS 193 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALe-l~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~ 193 (266)
.+..+..+.+.++...++ .+|..- +.++.+|.-.+ ..++|+++..|.+..|+..|+|.++..
T Consensus 46 ~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 46 RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 455788899999999997 666544 45566665555 469999999999999999999998764
No 328
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=84.18 E-value=2.1 Score=27.05 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKF 163 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~ 163 (266)
+++.|...|++.+...|+ +..|..||.+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 567777777777777755 5666666653
No 329
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.59 E-value=16 Score=36.86 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHH
Q 024536 132 SGKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----------GNVLSMYGDL 198 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d----------a~al~nla~l 198 (266)
+.+.++.|+..|..|++.--.- +.+..|+|..|. ..+ +++.+|+-.=.+.|.| +.+++.+|.+
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL-~~~---~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glf 454 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL-RIG---DAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLF 454 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH-Hhc---cHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 3478999999999999875443 344566777664 334 5566666666677774 3567778877
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-C-----HHHHHHHHHHHHHcCCcccccc
Q 024536 199 IWINHKDAPRAKSYFDRAVHSAPD-D-----CHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 199 l~~~~gd~deAi~~~ekAL~l~P~-d-----a~a~~~lA~ll~~~G~~~eA~~ 245 (266)
.+. ++++.||...+.+.++.... | +..+.-++.+..-.|+..++.+
T Consensus 455 af~-qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 455 AFK-QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred HHH-hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 766 89999999999999998721 1 1134556777777777777664
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.36 E-value=24 Score=32.30 Aligned_cols=88 Identities=18% Similarity=0.037 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHH--------
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWIN-------- 202 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a---l~nla~ll~~~-------- 202 (266)
....+|+...+.-++.+|.++....-|=.+|. +.|++++|...++-+-.+.|++..- |.++-.+-...
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evfag~~ 93 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVFAGGA 93 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHhccCC
Confidence 46789999999999999999977666666665 6899999999999999999997643 33322211100
Q ss_pred -----cCCHHHHHHHHHHHHHhCCC
Q 024536 203 -----HKDAPRAKSYFDRAVHSAPD 222 (266)
Q Consensus 203 -----~gd~deAi~~~ekAL~l~P~ 222 (266)
.|...+=+..+.+|+.+.-+
T Consensus 94 ~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 94 VPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcccC
Confidence 12455556666666666655
No 331
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=82.17 E-value=6.7 Score=42.35 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEI---RG---DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK 204 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~---~g---d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g 204 (266)
+.|++|+..|+|.-.-.|+-. ++.+..|..+.+. .+ ++++|+.-|++. .-.|.-|--|..-|.+|.. .+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~ 566 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQR-LG 566 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHH-hh
Confidence 789999999999999999876 6778888766542 12 467777777764 3456666667677777754 79
Q ss_pred CHHHHHHHHHHHHHhCCCCHH
Q 024536 205 DAPRAKSYFDRAVHSAPDDCH 225 (266)
Q Consensus 205 d~deAi~~~ekAL~l~P~da~ 225 (266)
++++-+++|.-|++.=|+.|.
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999875
No 332
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.92 E-value=11 Score=36.18 Aligned_cols=89 Identities=8% Similarity=0.020 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----CHHHHHHHHHHHHHHcCCH
Q 024536 133 GKESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-G----DGNVLSMYGDLIWINHKDA 206 (266)
Q Consensus 133 ~~~~eeA~~~y~rALel~P~-~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP-~----da~al~nla~ll~~~~gd~ 206 (266)
+|.+..|.++++-.+.+||. ||.....+=+++....++++--+.+++....... + -|...+..+.+++. .++.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l~~~ 194 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-LEKE 194 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-hcCc
Confidence 37899999999999999999 8875555444444345777766666666544211 1 12344455555655 3444
Q ss_pred ---------------HHHHHHHHHHHHhCCC
Q 024536 207 ---------------PRAKSYFDRAVHSAPD 222 (266)
Q Consensus 207 ---------------deAi~~~ekAL~l~P~ 222 (266)
++|...+++|+..-|.
T Consensus 195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 195 ESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8999999999999664
No 333
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.76 E-value=11 Score=39.20 Aligned_cols=90 Identities=9% Similarity=0.028 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG------NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH 225 (266)
Q Consensus 152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da------~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~ 225 (266)
-+..+|+.-+..+. ..+|..+.++|+..+..-|.|- ....+++.+|... .+.|+|.++++.|=+.+|.++-
T Consensus 353 iH~iLWn~A~~~F~--~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L-~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFK--MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL-EQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhhccccHH
Confidence 35666776666553 5779999999999988777653 4566788777764 5789999999999999988876
Q ss_pred HHHHHHHHHHHcCCccccc
Q 024536 226 VLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 226 a~~~lA~ll~~~G~~~eA~ 244 (266)
-....-.....-+.-++|.
T Consensus 430 ~q~~~~~~~~~E~~Se~AL 448 (872)
T KOG4814|consen 430 CQLLMLQSFLAEDKSEEAL 448 (872)
T ss_pred HHHHHHHHHHHhcchHHHH
Confidence 6555555556666666666
No 334
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.65 E-value=6.9 Score=40.61 Aligned_cols=85 Identities=9% Similarity=-0.029 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024536 134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP 207 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~d 207 (266)
++|..+++.|...+..-|.+- ....+++.++. ...++++|.++++.|-+.+|.++......-.+... .+.-+
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~Se 445 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcchH
Confidence 788889999999998888663 45566665554 45678999999999999999888665444333333 57788
Q ss_pred HHHHHHHHHHHhC
Q 024536 208 RAKSYFDRAVHSA 220 (266)
Q Consensus 208 eAi~~~ekAL~l~ 220 (266)
+|+.+..+.....
T Consensus 446 ~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 446 EALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhhh
Confidence 8888877766543
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.47 E-value=15 Score=39.24 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHHCCC-----CHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPE-----DAL----VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-----VLSMYGDLI 199 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~-----~~~----al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~-----al~nla~ll 199 (266)
.++.+|..+..++...-|. ... +..-.|.+.. ..+++++|+++.+.|+..=|.+.. ++...+.+.
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 7888888888888776655 111 1111233332 479999999999999998887653 455566655
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CCHHH--HHHHHHHHHHcCCccccc
Q 024536 200 WINHKDAPRAKSYFDRAVHSAP----DDCHV--LASYARFLWDAGEEEDDD 244 (266)
Q Consensus 200 ~~~~gd~deAi~~~ekAL~l~P----~da~a--~~~lA~ll~~~G~~~eA~ 244 (266)
..+|++++|..+.+++.+++- -.-.+ ...-+.++..+|+..-|+
T Consensus 508 -~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 508 -HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred -HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 348999999999999999843 22223 334467778888544444
No 336
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=80.96 E-value=7.8 Score=34.60 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----C-
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH----K- 204 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~----~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~----g- 204 (266)
+++++|.+.|+.-..- -.++..-+.||.....- .+++..|.++|+.|-. -+++.+..+++.++|... .
T Consensus 49 knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence 4555555555544442 23455666676543211 2468889999988765 677888888888777532 2
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536 205 -DAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235 (266)
Q Consensus 205 -d~deAi~~~ekAL~l~P~da~a~~~lA~ll~ 235 (266)
|.++|++|+.||-++ ++..+.+.|...+.
T Consensus 126 pd~~Ka~~y~traCdl--~~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDL--EDGEACFLLSTMYM 155 (248)
T ss_pred CCcHHHHHHHHHhccC--CCchHHHHHHHHHh
Confidence 278899999998754 88888888876443
No 337
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=80.42 E-value=1.6 Score=41.99 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHHCC-----------C-----C---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYP-----------E-----D---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM 194 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P-----------~-----~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~n 194 (266)
+++..|..-|+++++.-- + . -....|++.+.. ..+.+..|......+++.++....+++.
T Consensus 236 ~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~~R 314 (372)
T KOG0546|consen 236 QRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAHYR 314 (372)
T ss_pred ccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhCcHHHH
Confidence 567777777777765421 1 0 123344554433 3467788888888888999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536 195 YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG 238 (266)
Q Consensus 195 la~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G 238 (266)
.+..+.. ..++++|++.++.|...+|++..+...+..+.....
T Consensus 315 r~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 315 RGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred HHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 9988765 678999999999999999999998776665544443
No 338
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=79.79 E-value=3 Score=25.15 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q 024536 191 VLSMYGDLIWIN---HKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 191 al~nla~ll~~~---~gd~deAi~~~ekAL~l 219 (266)
+++.+|.++..- ..|.++|..+|++|.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 445556555331 13667777777777654
No 339
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.66 E-value=19 Score=37.00 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHcC--C
Q 024536 134 KESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRA-----ILAKPGDGNVLSMYGDLIWINHK--D 205 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~-~~~al~nlA~~L~~~~gd~e~A~~~~erA-----L~ldP~da~al~nla~ll~~~~g--d 205 (266)
+.+.-|.++++-.+.++|. ||.+...+-+++.....+|+=-+.+++.. |.+-|+.+.... +|.++..... +
T Consensus 356 GC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~A-lA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLA-LARFFLRKNEEDD 434 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHH-HHHHHHhcCChhh
Confidence 7888888888888999988 88766665554443445665555555544 556677666543 4555544222 2
Q ss_pred HHHHHHHHHHHHHhCC
Q 024536 206 APRAKSYFDRAVHSAP 221 (266)
Q Consensus 206 ~deAi~~~ekAL~l~P 221 (266)
-+.|...+.+|+..-|
T Consensus 435 rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 435 RQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4678888888888877
No 340
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.61 E-value=13 Score=35.96 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--GDGNVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP--~da~al~nla~ll~~~~gd~deAi~~ 212 (266)
++..-..+|+-...+.|. |.+-.|.+..+-+..| .+.++...+...+..- +....+...|.++.+ .|+.++|...
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~G-p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~eAr~a 387 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREG-PAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEEARAA 387 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhh-HHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHHHHHH
Confidence 444444555554444444 3333444444433333 4556665555444311 222344556777766 6899999999
Q ss_pred HHHHHHhCCCCHHHHHH
Q 024536 213 FDRAVHSAPDDCHVLAS 229 (266)
Q Consensus 213 ~ekAL~l~P~da~a~~~ 229 (266)
|++|+.+.++.++..+-
T Consensus 388 ydrAi~La~~~aer~~l 404 (415)
T COG4941 388 YDRAIALARNAAERAFL 404 (415)
T ss_pred HHHHHHhcCChHHHHHH
Confidence 99999999998876543
No 341
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.90 E-value=29 Score=32.31 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=45.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Q 024536 166 EIRGDFVKAEEYCGRAILAKPGDGN------VLSMYGDLIWINHKDAPRAKSYFDRAVHS-----APDDCHVLASYARFL 234 (266)
Q Consensus 166 ~~~gd~e~A~~~~erAL~ldP~da~------al~nla~ll~~~~gd~deAi~~~ekAL~l-----~P~da~a~~~lA~ll 234 (266)
...+++++|..++.+|++..-++.. ++-..+.++.+ ...+.++..+|+||..+ .|+.+..-..-|-=.
T Consensus 42 RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake-~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~ 120 (308)
T KOG1585|consen 42 RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE-LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA 120 (308)
T ss_pred HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 3568899999999999965443332 22233333333 45688888888888776 344333222222223
Q ss_pred HHcCCcccccc
Q 024536 235 WDAGEEEDDDD 245 (266)
Q Consensus 235 ~~~G~~~eA~~ 245 (266)
.+.-++++|++
T Consensus 121 lenv~Pd~Alq 131 (308)
T KOG1585|consen 121 LENVKPDDALQ 131 (308)
T ss_pred hhcCCHHHHHH
Confidence 44455666653
No 342
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.76 E-value=12 Score=32.03 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188 (266)
Q Consensus 131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d 188 (266)
.+.+..+..++..++.++..| ++.++.+++.++. ..|+.++|....+++..+-|.+
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcH
Confidence 344667788888999999999 6888889888776 6899999999999999999943
No 343
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.75 E-value=39 Score=34.77 Aligned_cols=120 Identities=14% Similarity=0.058 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------H-----------
Q 024536 134 KESESMDVYYQEMIKAY------------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAI-------L----------- 183 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~------------P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL-------~----------- 183 (266)
..|++|...|.-|++.. |-+...+..+|.+.. .+||.+.|....+|+| .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r-~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFR-FQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 67899999988887764 344567777887765 5788766655555554 3
Q ss_pred ---hCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCcccccc---ccccccc
Q 024536 184 ---AKPGDGNVLS---MYGDLIWINHKDAPRAKSYFDRAVHSAPD-DCHVLASYARFLW-DAGEEEDDDD---GDDQETC 252 (266)
Q Consensus 184 ---ldP~da~al~---nla~ll~~~~gd~deAi~~~ekAL~l~P~-da~a~~~lA~ll~-~~G~~~eA~~---~~~~~~~ 252 (266)
+.|.|-..|. .+-..+ ..+|-+.-|.++++-.+.++|. ||.+...+...|. .+.+++=-++ .-+++-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l-~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSL-AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2233332221 111122 3368899999999999999998 8876555554433 3344443332 2234444
Q ss_pred CCC
Q 024536 253 ASQ 255 (266)
Q Consensus 253 ~~~ 255 (266)
+++
T Consensus 410 l~~ 412 (665)
T KOG2422|consen 410 LSQ 412 (665)
T ss_pred Hhh
Confidence 444
No 344
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=78.63 E-value=4.4 Score=27.18 Aligned_cols=30 Identities=40% Similarity=0.477 Sum_probs=15.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536 178 CGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (266)
Q Consensus 178 ~erAL~ldP~da~al~nla~ll~~~~gd~de 208 (266)
|.+||..+|++...+..||..+.. +|+.++
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e-~gdp~r 34 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDE-HGDPAR 34 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHH-cCCHHH
Confidence 445555555555555555554433 454433
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.62 E-value=39 Score=34.41 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHHcCC
Q 024536 136 SESMDVYYQEMIKAYPE----DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNV----LSMYGDLIWINHKD 205 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~----~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--da~a----l~nla~ll~~~~gd 205 (266)
...|+++++-+++..+= .+.+++.||.+|.+...+++.|+.+++|++.+.-. ..+. ...++.++.+ . +
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~-~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-T-N 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-c-C
Confidence 34567777777742222 23577888988887788899999999999888743 3322 2334555544 3 3
Q ss_pred HHHHHHHHHHHHHhCCC
Q 024536 206 APRAKSYFDRAVHSAPD 222 (266)
Q Consensus 206 ~deAi~~~ekAL~l~P~ 222 (266)
...|..+++++|+.--+
T Consensus 115 ~~~a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 115 PKAALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45599999998887665
No 346
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=77.76 E-value=4.1 Score=26.50 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
++|..+|.+-.. ..+|+.|+.-|++|+++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 456667777665 57788888888888776
No 347
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.69 E-value=10 Score=35.17 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla 196 (266)
++++.|..+.++.+.++|+++.-+.--|.++. +.+.+.-|..-++..++.-|+++.+-..-.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 88999999999999999999999999998775 689999999999999999999998765433
No 348
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.17 E-value=6.5 Score=37.02 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=47.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~ 222 (266)
..+++.+|...|..|+..+|++..+...|+.++.. .|+.++|..++...=.-..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~ 200 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQD 200 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchh
Confidence 46999999999999999999999999999999887 79999999988775443333
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.86 E-value=17 Score=27.70 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDL---IWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~l---l~~~~gd~deAi~~~ekAL~l 219 (266)
.++.++|+..+++|+...++.+..+..+|.+ +.+ .|+|.+++.+-.+=+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI 72 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5777888888888888888877766665543 333 46777777666555444
No 350
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=75.75 E-value=9.8 Score=36.87 Aligned_cols=106 Identities=12% Similarity=-0.032 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C--H--
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---------------------D--G-- 189 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~---------------------d--a-- 189 (266)
+..+-++....||++||.-+.++..+|.- ..--..+|++.|++||+..-. | .
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~ 275 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLV 275 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhh
Confidence 34556777889999999999998888752 223457788888888773210 0 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCccccc
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDC--HVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da--~a~~~lA~ll~~~G~~~eA~ 244 (266)
.+-..+|.+. +..|+..+|++.|+...+-.|-.. .++.++-.++++..-+.+-.
T Consensus 276 YIKRRLAMCA-RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 276 YIKRRLAMCA-RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred HHHHHHHHHH-HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455544 347899999999999988888433 25667777777776665544
No 351
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.34 E-value=8.9 Score=27.43 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
+++|..+..+|++. +..|++++|..+|.+|+.
T Consensus 2 ~~~A~~~~~~Av~~----------------D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 2 LDKAIELIKKAVEA----------------DEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHH----------------HHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------------HHCCCHHHHHHHHHHHHH
Confidence 35666666776664 245677777666666655
No 352
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=75.26 E-value=11 Score=37.72 Aligned_cols=85 Identities=16% Similarity=0.075 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek 215 (266)
.+.|.+.|-++-+..-....++..-|.+-+...+|+.-|-..|+-.+..-|+++....-|-.++.. -+|-+.|..+|++
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~naraLFet 491 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 455555555554443222333333333323345777777777777777777776665555555544 4666667777776
Q ss_pred HHHhCC
Q 024536 216 AVHSAP 221 (266)
Q Consensus 216 AL~l~P 221 (266)
++..-.
T Consensus 492 sv~r~~ 497 (660)
T COG5107 492 SVERLE 497 (660)
T ss_pred hHHHHH
Confidence 655433
No 353
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.95 E-value=7.5 Score=29.16 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (266)
Q Consensus 137 eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l 184 (266)
..|+.+.++|++.| ..|+|++|..+|..||+.
T Consensus 4 ~~Ai~~a~~Ave~D----------------~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRD----------------QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHH----------------HccCHHHHHHHHHHHHHH
Confidence 46777777777742 468888888888888763
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.26 E-value=15 Score=33.53 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH 225 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~ 225 (266)
.+.+++|+...+.-++.+|.|+.....|-.+|.- .|++++|..-++-+-.+.|++..
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccch
Confidence 5889999999999999999999887777776654 89999999999999999998754
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.91 E-value=43 Score=29.74 Aligned_cols=109 Identities=11% Similarity=0.025 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHcCCH
Q 024536 134 KESESMDVYYQEMIKAYPEDA--LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM-----YGDLIWINHKDA 206 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~--~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~n-----la~ll~~~~gd~ 206 (266)
+..++|.+.|...-+-+-... ++.+..|.++. .+|+-+.|..+|..+-.-.| .|.+... -+.++.. .|-|
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD-~gsy 148 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVD-NGSY 148 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhc-cccH
Confidence 445677777766655554433 34444555443 46777777777776655433 2332222 2233333 5666
Q ss_pred HHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 207 PRAKSYFDRA-VHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 207 deAi~~~ekA-L~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+.-....+.. ..-+|--..+...||..-|+.|++++|..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~ 188 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKS 188 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHH
Confidence 6555544432 22334444556667777777777777663
No 356
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=73.56 E-value=7 Score=24.69 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 205 DAPRAKSYFDRAVHSAPDDCHVLASYAR 232 (266)
Q Consensus 205 d~deAi~~~ekAL~l~P~da~a~~~lA~ 232 (266)
.+++|..+|++.+...|+ +..|..+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 456777777777777664 445555554
No 357
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.56 E-value=26 Score=29.25 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=21.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW 200 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~ 200 (266)
..|++.-|..+...++..+|+|..+....+.++.
T Consensus 82 ~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 82 AAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3677777777777777777777777666666553
No 358
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.41 E-value=8.7 Score=28.84 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHC
Q 024536 137 ESMDVYYQEMIKAY 150 (266)
Q Consensus 137 eeA~~~y~rALel~ 150 (266)
+.|..+..+|++.+
T Consensus 4 ~~A~~~a~~AVe~D 17 (75)
T cd02682 4 EMARKYAINAVKAE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666777777653
No 359
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.39 E-value=23 Score=31.43 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPE--D----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-NVLSMYGD 197 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~--~----~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-~al~nla~ 197 (266)
+.+|...|.+|++.... . ..+++.+|.+.+ ..|++++|.++|.++|...-... ..+.+.|.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 56788888888876543 2 356677787655 67999999999999998654333 34444443
No 360
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=73.09 E-value=8.1 Score=23.70 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHHh
Q 024536 205 DAPRAKSYFDRAVHS 219 (266)
Q Consensus 205 d~deAi~~~ekAL~l 219 (266)
|+++|+.+|++|.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 356666666666554
No 361
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.95 E-value=13 Score=31.08 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 024536 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE 241 (266)
Q Consensus 191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~ 241 (266)
.....+.-.+. .||+..|..+.+.++..+|+|..++...+.+|...+...
T Consensus 72 ~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 72 KVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 33344544445 799999999999999999999999999999988776543
No 362
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=71.46 E-value=8.8 Score=25.73 Aligned_cols=34 Identities=32% Similarity=0.345 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536 141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAE 175 (266)
Q Consensus 141 ~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~ 175 (266)
..|.+||..+|++-..+..||..|. ..|+.+.|+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~-e~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLD-EHGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHH-HcCCHHHHh
Confidence 4688999999999999999999986 478876553
No 363
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.65 E-value=16 Score=37.42 Aligned_cols=66 Identities=20% Similarity=0.147 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 152 EDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAK-----PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 152 ~~~~al~nlA~~L~~~~--gd~e~A~~~~erAL~ld-----P~da~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
..|.++.|||.+- +.. .+-..++.+|.+||... -.+...|..+|..+++ ++++.+|+.++-.|-..
T Consensus 275 ~YPmALg~LadLe-Ei~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 275 RYPMALGNLADLE-EIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAADV 347 (618)
T ss_dssp T-HHHHHHHHHHH-HHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHH-hhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 5688899999854 222 33467899999999853 3455667778888877 89999999998888654
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.44 E-value=22 Score=27.07 Aligned_cols=51 Identities=4% Similarity=0.076 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFL--KEIRGDFVKAEEYCGRAILA 184 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L--~~~~gd~e~A~~~~erAL~l 184 (266)
.+.++|+..+++||+..++.+.-+..+|.+. +...|+|.+++++.-+=+.+
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998877777643 22468888888877665554
No 365
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=70.39 E-value=25 Score=36.05 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (266)
Q Consensus 137 eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekA 216 (266)
++|.++.+.-+--....+..++.-|.++. .-+..++|.++|++.+..+|+ +.++.+|.-+++ .|-..+|...++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-- 98 (578)
T PRK15490 25 AQAVALIDSELPTEALTSLAMLKKAEFLH-DVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLILK-- 98 (578)
T ss_pred HHHHHHHHHhCCccchhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHHH--
Confidence 33444444333333334455555566665 357789999999999999999 556677777766 687788877777
Q ss_pred HHhCCC
Q 024536 217 VHSAPD 222 (266)
Q Consensus 217 L~l~P~ 222 (266)
++.|.
T Consensus 99 -~~~~~ 103 (578)
T PRK15490 99 -KVSNG 103 (578)
T ss_pred -HhCcc
Confidence 44554
No 366
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.23 E-value=31 Score=34.99 Aligned_cols=73 Identities=16% Similarity=0.034 Sum_probs=54.9
Q ss_pred CCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024536 150 YPEDALVL-ANYAKFLKEIRGDFVKAEEYCGRAIL---AKPG----DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (266)
Q Consensus 150 ~P~~~~al-~nlA~~L~~~~gd~e~A~~~~erAL~---ldP~----da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P 221 (266)
++++.-+. .-+|.++. ..|+.+.|..+|..+++ ..-. -|.+++-+|.++|...|-..+|..++.||-+-.-
T Consensus 444 d~Dd~~lk~lL~g~~lR-~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILR-NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 55555433 34566665 57899999999999983 2222 3689999999999965559999999999999875
Q ss_pred CC
Q 024536 222 DD 223 (266)
Q Consensus 222 ~d 223 (266)
++
T Consensus 523 dY 524 (546)
T KOG3783|consen 523 DY 524 (546)
T ss_pred cc
Confidence 54
No 367
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.92 E-value=62 Score=30.14 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 174 AEEYCGRAILAKPGDGNVLSMYGDLIWIN---------------------HKDAPRAKSYFDRAVHSAPDDCHVLASYAR 232 (266)
Q Consensus 174 A~~~~erAL~ldP~da~al~nla~ll~~~---------------------~gd~deAi~~~ekAL~l~P~da~a~~~lA~ 232 (266)
-.+.++.=++..|++..++..+|.++... +.-.+.|..++.+|++++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 44455555566777776666666544321 113578888888888888888777665555
Q ss_pred HHHHcCC
Q 024536 233 FLWDAGE 239 (266)
Q Consensus 233 ll~~~G~ 239 (266)
+-...|+
T Consensus 142 ~s~~fge 148 (277)
T PF13226_consen 142 ISAYFGE 148 (277)
T ss_pred HHhhcCC
Confidence 4444443
No 368
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.67 E-value=11 Score=28.33 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l 184 (266)
+.++|+.+.++|+..| ..|++++|..+|..||+.
T Consensus 2 ~l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHHH
Confidence 4567888888886642 357788888888888773
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.52 E-value=23 Score=33.70 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
.|.+.+|+++.++++.++|-+...+.-+-.+|...|+.-.|+.|
T Consensus 292 ~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 56677777777777777776666666666666666665555544
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.47 E-value=31 Score=36.99 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 024536 158 ANYAKFLKEIRGDFVKAEEYCGRAILAKPG--D-------GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH--- 225 (266)
Q Consensus 158 ~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--d-------a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~--- 225 (266)
..+|+.+. ...++++|..+..++...-|. + ++.....|.+.. .++++++|+++.+.++..=|.+..
T Consensus 419 ll~aW~~~-s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 419 LLQAWLLA-SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHH-HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhh
Confidence 33444443 468899999999998887655 1 122223344443 489999999999999999998754
Q ss_pred --HHHHHHHHHHHcCCccccc
Q 024536 226 --VLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 226 --a~~~lA~ll~~~G~~~eA~ 244 (266)
+...++.+..-.|++++|.
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al 517 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQAL 517 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHH
Confidence 4667788888888888887
No 371
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.46 E-value=56 Score=29.74 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHH----------------HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 152 EDALVLANYAKFLKEIRGDFVKAEEYCG----------------RAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 152 ~~~~al~nlA~~L~~~~gd~e~A~~~~e----------------rAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek 215 (266)
.+|.+|..+|..++ ..+++.+|+.+|- ....-.|.....+...+++-+...++...|...++.
T Consensus 88 Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 88 GDPELHHLLAEKLW-KEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp --HHHHHHHHHHHH-HTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 57888999998887 4677877777662 122456777777777777777667888888887766
Q ss_pred HHHh
Q 024536 216 AVHS 219 (266)
Q Consensus 216 AL~l 219 (266)
-++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 372
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=68.23 E-value=14 Score=27.56 Aligned_cols=15 Identities=0% Similarity=-0.068 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHC
Q 024536 136 SESMDVYYQEMIKAY 150 (266)
Q Consensus 136 ~eeA~~~y~rALel~ 150 (266)
-..|+.+.++|++.+
T Consensus 3 ~~~a~~l~~~Ave~D 17 (77)
T cd02683 3 ELAAKEVLKRAVELD 17 (77)
T ss_pred hHHHHHHHHHHHHHH
Confidence 457788888887753
No 373
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=67.95 E-value=57 Score=27.89 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH----HHHHHHHHcC
Q 024536 134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSM----YGDLIWINHK 204 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~da~al~n----la~ll~~~~g 204 (266)
|++++|.++|.++.+...... ..+.++-.+.. ..+++.....+..+|-.+- +.|.+.... -|..+ ..++
T Consensus 50 Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~-l~~r 127 (177)
T PF10602_consen 50 GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLAN-LAQR 127 (177)
T ss_pred hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HHhc
Confidence 689999999999888765443 33344433333 3689999999998887753 344433221 23333 3478
Q ss_pred CHHHHHHHHHHHHHhC
Q 024536 205 DAPRAKSYFDRAVHSA 220 (266)
Q Consensus 205 d~deAi~~~ekAL~l~ 220 (266)
+|.+|...|-.++.-.
T Consensus 128 ~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 128 DFKEAAELFLDSLSTF 143 (177)
T ss_pred hHHHHHHHHHccCcCC
Confidence 9999999998776444
No 374
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=66.73 E-value=16 Score=26.83 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKA 149 (266)
Q Consensus 136 ~eeA~~~y~rALel 149 (266)
+++|+.++++|++.
T Consensus 3 ~~~A~~l~~~Av~~ 16 (75)
T cd02678 3 LQKAIELVKKAIEE 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 46778888888764
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.81 E-value=1.3e+02 Score=30.63 Aligned_cols=109 Identities=17% Similarity=0.083 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-HHHHHHHHHH-HHHH
Q 024536 134 KESESMDVYYQEMIKAYPE--DALVLAN----YAKFLKEIRGDFVKAEEYCGRAILAKPG---D-GNVLSMYGDL-IWIN 202 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~--~~~al~n----lA~~L~~~~gd~e~A~~~~erAL~ldP~---d-a~al~nla~l-l~~~ 202 (266)
.+++.|+.++.|++.+.-. ..+..+. ++.++. +.+...|....+++|+.--+ + ...++.+-.+ +...
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~--~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYF--KTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 5789999999999988844 3333332 344443 33445599999999987544 1 1112222211 1111
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCHHH--HHHH--HHHHHHcCCccccc
Q 024536 203 HKDAPRAKSYFDRAVHSA--PDDCHV--LASY--ARFLWDAGEEEDDD 244 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~--P~da~a--~~~l--A~ll~~~G~~~eA~ 244 (266)
.+|+..|+..++....+. ..++.+ +..+ +.++...+..++++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~ 199 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVL 199 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 269999999999999988 466654 2223 34444455555555
No 376
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=63.90 E-value=40 Score=30.57 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHH----------HcCC-HHHHHHHHHHHHHh--C---CCCHHH--HHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLA-NYAKFLKE----------IRGD-FVKAEEYCGRAILA--K---PGDGNV--LSM 194 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~-nlA~~L~~----------~~gd-~e~A~~~~erAL~l--d---P~da~a--l~n 194 (266)
++++.|+.+.+.||+.+=.-|.-+. +++.++.+ ..|. ++-+ +......+ + |+...+ |-.
T Consensus 97 Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~~dmpd~vrAKl~K~ 174 (230)
T PHA02537 97 GDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTEWDMPDEVRAKLYKA 174 (230)
T ss_pred cCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhcCCCChHHHHHHHHH
Confidence 6999999999999999854443222 33332211 1121 1111 11222221 1 333333 333
Q ss_pred HHHHHHH--------HcCCHHHHHHHHHHHHHhCCCC
Q 024536 195 YGDLIWI--------NHKDAPRAKSYFDRAVHSAPDD 223 (266)
Q Consensus 195 la~ll~~--------~~gd~deAi~~~ekAL~l~P~d 223 (266)
.|..+.. ..++...|+.++++|+.++|+-
T Consensus 175 ~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 175 AGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 4443321 1356789999999999999863
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.31 E-value=53 Score=29.89 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccccc
Q 024536 222 DDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 222 ~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
.++..+..+|..+|+.+++.+|+.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~ 111 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAER 111 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHH
Confidence 345555555555555555555554
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=63.21 E-value=21 Score=33.32 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
.++..++-.+.. .++++.++..+++.+.++|-+-.+|..+-.+|...|+...|++.
T Consensus 154 ~~l~~lae~~~~-~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~ 209 (280)
T COG3629 154 KALTKLAEALIA-CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRA 209 (280)
T ss_pred HHHHHHHHHHHh-cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHH
Confidence 345556666554 78999999999999999999999999999999999999999953
No 379
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=62.59 E-value=70 Score=32.24 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHH---------hCC---CCHHHHHHHH--H
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEE--YCGRAIL---------AKP---GDGNVLSMYG--D 197 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~--~~erAL~---------ldP---~da~al~nla--~ 197 (266)
+..++|+.+++.+++..|.+....+..-.+ .+..|.+|+. .+-+.+. +.| .+.+.-+-++ .
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~~f---vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVFLF---VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 457889999999999998888665544332 2233444433 1222221 222 2334333333 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536 198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
+++. +|+|.++.-|-.=..+++| .+.++.-+|..+....++++|-+.
T Consensus 471 yLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 471 YLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444 7999999999999999999 999999999999999999999854
No 380
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.13 E-value=18 Score=27.14 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 170 DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 170 d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
++++|..+.++|+..| ..|++++|+.+|.+||+.
T Consensus 2 ~l~kai~Lv~~A~~eD----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh----------------HhhhHHHHHHHHHHHHHH
Confidence 3567777777775432 246777777777777764
No 381
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=61.98 E-value=29 Score=34.38 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536 168 RGDFVKAEEYCGRAIL--AKP--GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH 225 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~--ldP--~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~ 225 (266)
.+.|+.|.....++.- .+. ..+..++.+|.+..- +.||..|.++|-+|+...|++..
T Consensus 222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcchhh
Confidence 3567888877776652 112 334556667776644 89999999999999999998654
No 382
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=61.78 E-value=23 Score=25.72 Aligned_cols=17 Identities=12% Similarity=-0.027 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHHCC
Q 024536 135 ESESMDVYYQEMIKAYP 151 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P 151 (266)
.+++|..+..+|++.+-
T Consensus 4 ~~~~A~~li~~Av~~d~ 20 (77)
T smart00745 4 YLSKAKELISKALKADE 20 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677777777776543
No 383
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=61.64 E-value=23 Score=26.26 Aligned_cols=32 Identities=22% Similarity=0.116 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
+++|+.+.++|++.| ..|++++|..+|..||+
T Consensus 3 l~~Ai~lv~~Av~~D----------------~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKD----------------QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHH----------------HhccHHHHHHHHHHHHH
Confidence 567888888887643 34556666666655554
No 384
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=61.45 E-value=1.5e+02 Score=31.84 Aligned_cols=102 Identities=10% Similarity=0.052 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHH
Q 024536 137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI--NHKDAPRAKSYFD 214 (266)
Q Consensus 137 eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~--~~gd~deAi~~~e 214 (266)
+.=+.-++.-+.+++-+...+..|=.+++ ..|++++-...-.++.++.|..+..|..+..-... ...+-.++...|+
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 44556677777888888777777766665 57999999999999999999999998876643322 2366788899999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536 215 RAVHSAPDDCHVLASYARFLWDAGEE 240 (266)
Q Consensus 215 kAL~l~P~da~a~~~lA~ll~~~G~~ 240 (266)
+|+. +-+....|..++.++...+..
T Consensus 175 kal~-dy~~v~iw~e~~~y~~~~~~~ 199 (881)
T KOG0128|consen 175 KALG-DYNSVPIWEEVVNYLVGFGNV 199 (881)
T ss_pred HHhc-ccccchHHHHHHHHHHhcccc
Confidence 9987 566777888888888877663
No 385
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=61.20 E-value=20 Score=26.71 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
+.+|+.++++|++.+- .++|++|..+|..+|.
T Consensus 3 l~~A~~l~~~Ave~d~----------------~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 3 LEQAAELIRLALEKEE----------------EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHH----------------HhhHHHHHHHHHHHHH
Confidence 4677888888877532 3555555555555554
No 386
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.62 E-value=36 Score=33.64 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536 186 PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV 217 (266)
Q Consensus 186 P~da~al~nla~ll~~~~gd~deAi~~~ekAL 217 (266)
-+++..|..+|..... +|+++-|+.+|+++-
T Consensus 344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALR-QGNIELAEECYQKAK 374 (443)
T ss_dssp CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhc
Confidence 3567788888887765 788888888888763
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.23 E-value=46 Score=26.90 Aligned_cols=44 Identities=5% Similarity=0.012 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536 173 KAEEYCGRAILAK--PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV 217 (266)
Q Consensus 173 ~A~~~~erAL~ld--P~da~al~nla~ll~~~~gd~deAi~~~ekAL 217 (266)
.+...|+...... -..+..|..+|.++.. .+++++|.++|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhhC
Confidence 6777777776643 5567777778877654 788888888888875
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.80 E-value=1.4e+02 Score=28.85 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHH-HHcCCHHHHHHHHHHHHHh
Q 024536 134 KESESMDVYYQEMIKAYPEDAL--VLANYAKFLK-EIRGDFVKAEEYCGRAILA 184 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~--al~nlA~~L~-~~~gd~e~A~~~~erAL~l 184 (266)
.+|..|.+.|...+..-|.+.. .+..++..+. -..-++++|..++++.+..
T Consensus 145 ~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 145 YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6788888888888875333332 3444433321 1356778888888876654
No 389
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=59.64 E-value=18 Score=26.26 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHHH
Q 024536 168 RGDFVKAEEYCGRAIL 183 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ 183 (266)
.|++++|..+|.+|++
T Consensus 21 ~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 21 AGDYEEALELYKKAIE 36 (77)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555555555544
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.52 E-value=20 Score=24.05 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 193 SMYGDLIWINHKDAPRAKSYFDRAVH 218 (266)
Q Consensus 193 ~nla~ll~~~~gd~deAi~~~ekAL~ 218 (266)
+++|.+|.. .||.+.|...++..+.
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHH
Confidence 356666665 5777777777777774
No 391
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=59.35 E-value=79 Score=32.02 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=73.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024536 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (266)
Q Consensus 142 ~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P 221 (266)
-++.-|+-||+|...|+.|-..| +.++.+++-.+.|++...--|--+.+|..+-.--.. ..|+..-+.+|-|++...=
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~-~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYL-ETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA-RKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHH-hhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh-hhhHHHHHHHHHHHHhhhc
Confidence 67888999999999999998866 468999999999999999888888887655332222 4789999999999998654
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 024536 222 DDCHVLASYARFLWDAGE 239 (266)
Q Consensus 222 ~da~a~~~lA~ll~~~G~ 239 (266)
+ ...|..|-....+...
T Consensus 108 ~-ldLW~lYl~YIRr~n~ 124 (660)
T COG5107 108 N-LDLWMLYLEYIRRVNN 124 (660)
T ss_pred c-HhHHHHHHHHHHhhCc
Confidence 4 5666666665555553
No 392
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.11 E-value=77 Score=28.19 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAK----FLKEIRGDFVKAEEYCGRA-ILAKPGDGNVLSMYGDLIWINHKDAPR 208 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~----~L~~~~gd~e~A~~~~erA-L~ldP~da~al~nla~ll~~~~gd~de 208 (266)
++...|..+|..+-.-.|- |.+..+++. ++....|-|++-....+.. -.-+|--..+.-.||..-|+ .||+.+
T Consensus 108 gdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-agd~a~ 185 (221)
T COG4649 108 GDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-AGDFAK 185 (221)
T ss_pred ccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-ccchHH
Confidence 7888889999887665543 333333332 2223467777765544432 11233334455567777776 799999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 209 AKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
|..+|++... +-+.++...+-+.++.+
T Consensus 186 A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 186 AKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 9999999887 55555555555555543
No 393
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=58.14 E-value=18 Score=27.10 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536 172 VKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHV 226 (266)
Q Consensus 172 e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a 226 (266)
+.|..+..+|+++|-.- .+..++. .|.+|++.+.+++..-||++..
T Consensus 4 ~~A~~~a~~AVe~D~~g-----r~~eAi~----~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 4 EMARKYAINAVKAEKEG-----NAEDAIT----NYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHHHHhcC-----CHHHHHH----HHHHHHHHHHHHHHhCCChHHH
Confidence 45666777777765432 1111111 2456677777777777877654
No 394
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=57.88 E-value=16 Score=27.25 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (266)
Q Consensus 171 ~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d 223 (266)
+.+|...+.+|++.+-. .+|..++ .-|..|+.+|..++...++.
T Consensus 3 l~~A~~l~~~Ave~d~~-----~~y~eA~----~~Y~~~i~~~~~~~k~e~~~ 46 (75)
T cd02677 3 LEQAAELIRLALEKEEE-----GDYEAAF----EFYRAGVDLLLKGVQGDSSP 46 (75)
T ss_pred HHHHHHHHHHHHHHHHH-----hhHHHHH----HHHHHHHHHHHHHhccCCCH
Confidence 35778888888776543 1222222 23556666777777666553
No 395
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=57.00 E-value=21 Score=25.86 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=12.9
Q ss_pred HcCCHHHHHHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ 183 (266)
..|++++|..+|..|++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45888888888877766
No 396
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=56.45 E-value=22 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~l 184 (266)
.+|..||.+-. ...+|++|..-|+++|.+
T Consensus 2 dv~~~Lgeisl-e~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISL-ENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHH-HhccHHHHHHHHHHHHHH
Confidence 45677787665 368899999999999886
No 397
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.42 E-value=31 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=9.2
Q ss_pred HcCCHHHHHHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ 183 (266)
..|++++|..+|.+|++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34555555555555544
No 398
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=56.40 E-value=99 Score=24.48 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCG 179 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~e 179 (266)
+.......+++.++..++.++..+..|..++. .-+..+...+++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~ 64 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD 64 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence 35788889999999999888888888776553 234455555555
No 399
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.77 E-value=29 Score=26.23 Aligned_cols=33 Identities=12% Similarity=-0.025 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
.|++|.++..+||..+- .|+.++|+.+|++++.
T Consensus 4 ~~~~A~~~I~kaL~~dE----------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRADE----------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhhh----------------cCCHHHHHHHHHHHHH
Confidence 46677777777776432 3566666666666655
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.64 E-value=33 Score=32.66 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=44.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH 218 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~ 218 (266)
..|.+.+|..+.++++.++|-+...+..+-.++.. .||--.|+..|++.-+
T Consensus 291 e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya~ 341 (361)
T COG3947 291 EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYAE 341 (361)
T ss_pred HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHHH
Confidence 47999999999999999999999998888877765 7998899999987643
No 401
>PF12854 PPR_1: PPR repeat
Probab=54.03 E-value=31 Score=21.23 Aligned_cols=25 Identities=16% Similarity=-0.010 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ek 215 (266)
..|..+-..+-+ .|+.++|+++|++
T Consensus 8 ~ty~~lI~~~Ck-~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCK-AGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHH-CCCHHHHHHHHHh
Confidence 334444444444 5667777666654
No 402
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.61 E-value=99 Score=36.78 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHH---CC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536 136 SESMDVYYQEMIKA---YP----EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208 (266)
Q Consensus 136 ~eeA~~~y~rALel---~P----~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~de 208 (266)
..+-+-.++|++-. +| .-+..|.++|.+.. ..|.++.|..+.-.|.+..+ ++++...|.++|. +||...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~-~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQ-TGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHHHHhhhhccc--chHHHHHHHHHHh-hccHHH
Confidence 45555566666433 33 33689999999875 57999999999999999884 6777889999998 899999
Q ss_pred HHHHHHHHHHhCC
Q 024536 209 AKSYFDRAVHSAP 221 (266)
Q Consensus 209 Ai~~~ekAL~l~P 221 (266)
|+.++++.+.++-
T Consensus 1721 Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999996653
No 403
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=52.30 E-value=41 Score=24.35 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG 187 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~ 187 (266)
+++|+.+..+|++.+-. .++...+ .-|..|..+|.+++...|+
T Consensus 3 ~~~a~~l~~~Av~~D~~-----g~~~~Al----~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 3 LQQAKELIKQAVKEDED-----GNYEEAL----ELYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHH----HHHHHHHHHHHHHhccCCC
Confidence 46777777788776554 2232222 2256788888888887776
No 404
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=51.81 E-value=40 Score=25.09 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhCCC
Q 024536 207 PRAKSYFDRAVHSAPD 222 (266)
Q Consensus 207 deAi~~~ekAL~l~P~ 222 (266)
.+|+.+|.+++...||
T Consensus 30 ~~aie~l~~~lk~e~d 45 (77)
T cd02683 30 QEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 3444444455555553
No 405
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.42 E-value=74 Score=32.40 Aligned_cols=83 Identities=22% Similarity=0.155 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----GNVLSMYGDLIWINHKDAPRAK 210 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d----a~al~nla~ll~~~~gd~deAi 210 (266)
+.+..++.+....++.|.++..+.+.|..+. ..|+.+.|..+++..+. +.- ...++.+|+++.. +.+|.+|-
T Consensus 248 d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~-~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~-~~~~~~aa 323 (546)
T KOG3783|consen 248 DGEECEKALKKYRKRYPKGALWLLMEARILS-IKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVG-QHQYSRAA 323 (546)
T ss_pred cHHHHHHHhHHHHHhCCCCccHHHHHHHHHH-HcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 3377788888889999999999999999876 56779999999999988 322 2344566776655 46799999
Q ss_pred HHHHHHHHhCC
Q 024536 211 SYFDRAVHSAP 221 (266)
Q Consensus 211 ~~~ekAL~l~P 221 (266)
.++.....++-
T Consensus 324 d~~~~L~desd 334 (546)
T KOG3783|consen 324 DSFDLLRDESD 334 (546)
T ss_pred hHHHHHHhhhh
Confidence 99999888754
No 406
>PF13041 PPR_2: PPR repeat family
Probab=48.76 E-value=48 Score=21.63 Aligned_cols=30 Identities=7% Similarity=-0.121 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSA 220 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~ 220 (266)
..|..+-..+.+ .|++++|.++|++..+..
T Consensus 4 ~~yn~li~~~~~-~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCK-AGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHH-CcCHHHHHHHHHHHHHcC
Confidence 345555555555 789999999999988764
No 407
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=48.39 E-value=20 Score=34.70 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (266)
Q Consensus 139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ 197 (266)
|+.....+++.++....+|+..+..+. ...++++|++.++.|...+|++..+...+..
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 333444445567777777777776554 4688999999999999999999987665543
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.97 E-value=1.4e+02 Score=26.70 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILA 184 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~l 184 (266)
......+.++.+|++...... .+...+|..++ ..|++++|.++|+++...
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASS 207 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Confidence 344566667777766644321 23344555554 367777777777777544
No 409
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.60 E-value=14 Score=29.72 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536 172 VKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHV 226 (266)
Q Consensus 172 e~A~~~~erAL~ldP~-da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a 226 (266)
++-+++++++-..+-. -|-.+..+|.+|.+ .|+-+.|.+-|+.--++-|+....
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~-~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSN-SGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhh-cCChHHHHHHHHHhhhhCccchhH
Confidence 3344455555554422 34456667766655 677777777777777777776543
No 410
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.45 E-value=55 Score=34.79 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=19.3
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 216 AVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 216 AL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
....-|++...+-.+|.++...|.-++|.+
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 334447776666677777777777666663
No 411
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=45.89 E-value=54 Score=23.25 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (266)
Q Consensus 171 ~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d 223 (266)
+++|..+..+|+..|-.- ++..++. -|.+|+.+|.+++...++.
T Consensus 2 ~~~A~~~~~~Av~~D~~g-----~~~~A~~----~Y~~ai~~l~~~~~~~~~~ 45 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAG-----NYEEALE----LYKEAIEYLMQALKSESNP 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHTT-----SHHHHHH----HHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHHHHCC-----CHHHHHH----HHHHHHHHHHHHhccCCCH
Confidence 356777777777654321 1121221 1445555666666666543
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.17 E-value=90 Score=25.18 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536 138 SMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAI 182 (266)
Q Consensus 138 eA~~~y~rALel--~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL 182 (266)
.+...|+.+... --..+..|..+|.++. ..+++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le-~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLE-KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhhC
Confidence 566666666654 4566778888888774 6899999999999886
No 413
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.58 E-value=78 Score=32.35 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCG 179 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~e 179 (266)
++.-.|..-...+|+..|.+|......+.+.. ..|+|+.|.+...
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~-~lg~ye~~~~~~s 347 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFS-HLGYYEQAYQDIS 347 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH-HhhhHHHHHHHhh
Confidence 67778888889999999999987777776553 4677777666543
No 414
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.56 E-value=1.8e+02 Score=32.43 Aligned_cols=85 Identities=13% Similarity=-0.056 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYA 231 (266)
Q Consensus 152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA 231 (266)
+.+.+|..+|.+.. ..+...+|.+.|-+| +||..|...-.+..+ .+.|++-+.|+..|.+.--. +.+-..+-
T Consensus 1102 n~p~vWsqlakAQL-~~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk~~E-~~id~eLi 1173 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQL-QGGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKKVRE-PYIDSELI 1173 (1666)
T ss_pred CChHHHHHHHHHHH-hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhhcC-ccchHHHH
Confidence 34566666666543 356666676666554 566666665555544 67777777777777664332 23333444
Q ss_pred HHHHHcCCccccc
Q 024536 232 RFLWDAGEEEDDD 244 (266)
Q Consensus 232 ~ll~~~G~~~eA~ 244 (266)
.+|.+.++..|-+
T Consensus 1174 ~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELE 1186 (1666)
T ss_pred HHHHHhchHHHHH
Confidence 4555555554433
No 415
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=44.25 E-value=40 Score=32.32 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS 193 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~ 193 (266)
.++|+.+|++|++. ++.|.+-+|+.+|+.|+.+-|+--..+.
T Consensus 16 ~kkA~~l~~~av~~----------------Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVLK----------------EQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHH----------------hhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 35677777776652 4567777888888888888776555544
No 416
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.85 E-value=1.8e+02 Score=27.03 Aligned_cols=102 Identities=15% Similarity=0.042 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cC-----------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536 138 SMDVYYQEMIKAYPEDALVLANYAKFLKEI----RG-----------------DFVKAEEYCGRAILAKPGDGNVLSMYG 196 (266)
Q Consensus 138 eA~~~y~rALel~P~~~~al~nlA~~L~~~----~g-----------------d~e~A~~~~erAL~ldP~da~al~nla 196 (266)
.-.+.++.=++..|+...++..+|.++... +| -.+.|..++.+|++++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456677777899999999999888765431 11 248899999999999999998877665
Q ss_pred HHHHHHcCCHHHHHHHHHH------HHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536 197 DLIWINHKDAPRAKSYFDR------AVHSAPDDCHVLASYARFLWDAGEE 240 (266)
Q Consensus 197 ~ll~~~~gd~deAi~~~ek------AL~l~P~da~a~~~lA~ll~~~G~~ 240 (266)
.+... .|+.+==..+|.- -+..+-.++.++....-.+...|-.
T Consensus 141 ~~s~~-fgeP~WL~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 189 (277)
T PF13226_consen 141 NISAY-FGEPDWLAALFAGQPAESRPLAHAEYDPEVWQAAAALLARYGLN 189 (277)
T ss_pred HHHhh-cCCchHHHHHHCCCCCCcchHHHhhcchhhHHHHHHHHHHcCCC
Confidence 54422 3444422222211 0011122445555555556666653
No 417
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=43.60 E-value=61 Score=23.93 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536 171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223 (266)
Q Consensus 171 ~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d 223 (266)
+++|..+..+|++.|-.. ++..++. -|..|+.+|..++...++.
T Consensus 3 l~~Ai~lv~~Av~~D~~g-----~y~eA~~----lY~~ale~~~~~~k~e~~~ 46 (75)
T cd02684 3 LEKAIALVVQAVKKDQRG-----DAAAALS----LYCSALQYFVPALHYETDA 46 (75)
T ss_pred HHHHHHHHHHHHHHHHhc-----cHHHHHH----HHHHHHHHHHHHHhhCCCH
Confidence 467888888887654321 2222221 2455666777777666543
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.50 E-value=50 Score=22.07 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 158 ANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 158 ~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
++||..|. ..||.+.|...++.++.
T Consensus 3 LdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 57888776 58999999999999995
No 419
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.34 E-value=1.1e+02 Score=28.79 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 171 ~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek 215 (266)
+-+|..+++.++..+|.|......+..+|.. .|-...|...|++
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHh
Confidence 4667777777777777777777777666644 5777777776643
No 420
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=43.31 E-value=40 Score=19.03 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHH
Q 024536 203 HKDAPRAKSYFDRAVH 218 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~ 218 (266)
.+++++|...|++-.+
T Consensus 13 ~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 13 MGQFEEALEVFDEMRE 28 (31)
T ss_pred cchHHHHHHHHHHHhH
Confidence 4556666666655443
No 421
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=42.39 E-value=1.4e+02 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCC
Q 024536 192 LSMYGDLIWINHKDAPRAKSYFDRA----VHSAPD 222 (266)
Q Consensus 192 l~nla~ll~~~~gd~deAi~~~ekA----L~l~P~ 222 (266)
..|+|.++ +.+||.+-.++|++-| +.+-|.
T Consensus 53 CHNLA~FW-R~~gd~~yELkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 53 CHNLADFW-RSQGDSDYELKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HhhHHHHH-HHcCChHHHHHHHHHHHHHHHHhccC
Confidence 45788765 5589999999998755 455564
No 422
>PRK11619 lytic murein transglycosylase; Provisional
Probab=42.39 E-value=1.3e+02 Score=31.18 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHHCC
Q 024536 134 KESESMDVYYQEMIKAYP 151 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P 151 (266)
.+.+.|...+.+......
T Consensus 255 ~d~~~A~~~~~~~~~~~~ 272 (644)
T PRK11619 255 QDAENARLMIPSLVRAQK 272 (644)
T ss_pred hCHHHHHHHHHHHHHhcC
Confidence 566777777776544443
No 423
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.31 E-value=1.7e+02 Score=30.19 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD 214 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e 214 (266)
...-.+.++.++++.. .+..+++.++.+|.+ +..++-...++|.++.+=+|...-..++..| + +.+..+|..+|.
T Consensus 81 k~~~veh~c~~~l~~~-e~kmal~el~q~y~e--n~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-E-kik~sk~a~~f~ 155 (711)
T COG1747 81 KNQIVEHLCTRVLEYG-ESKMALLELLQCYKE--NGNEQLYSLWERLVEYDFNDVVIGRELADKY-E-KIKKSKAAEFFG 155 (711)
T ss_pred HHHHHHHHHHHHHHhc-chHHHHHHHHHHHHh--cCchhhHHHHHHHHHhcchhHHHHHHHHHHH-H-HhchhhHHHHHH
Confidence 3455566788888864 567788888888764 3568888899999999999999888888766 4 477888999998
Q ss_pred HHHHhC
Q 024536 215 RAVHSA 220 (266)
Q Consensus 215 kAL~l~ 220 (266)
+|+..-
T Consensus 156 Ka~yrf 161 (711)
T COG1747 156 KALYRF 161 (711)
T ss_pred HHHHHh
Confidence 887643
No 424
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=40.94 E-value=68 Score=18.24 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=11.0
Q ss_pred cCCHHHHHHHHHHHHH
Q 024536 203 HKDAPRAKSYFDRAVH 218 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~ 218 (266)
.+++++|+.+|++..+
T Consensus 13 ~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 13 AGRVEEALELFKEMLE 28 (35)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5677777777776554
No 425
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.55 E-value=1.3e+02 Score=33.61 Aligned_cols=67 Identities=19% Similarity=0.093 Sum_probs=39.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.-+.+++|.++.++. +.+.+|..+|.+-.+ ++...+|+.-|-|| +|+..+...-.+--+.|.+++-+
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHH
Confidence 345566666666654 456777777776655 66777777777554 44444444444445555555543
No 426
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=40.52 E-value=81 Score=24.98 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHhCCCCHHHHHHHHHHHHHcC
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR---------AVHSAPDDCHVLASYARFLWDAG 238 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek---------AL~l~P~da~a~~~lA~ll~~~G 238 (266)
.+.......+++..+..++.++..+..+..++.. -+..+.+.+++. |+.+-... ..+.....++...|
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~--~~~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~~l~~k~~ 96 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAK--YDPQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAVELYKKDG 96 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH--HCHHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHHHHHHhhc
Confidence 4678899999999999988888888888877754 356777777773 22222111 12445556666777
Q ss_pred Ccccccc
Q 024536 239 EEEDDDD 245 (266)
Q Consensus 239 ~~~eA~~ 245 (266)
++++|++
T Consensus 97 ~~~~Al~ 103 (140)
T smart00299 97 NFKDAIV 103 (140)
T ss_pred CHHHHHH
Confidence 7777774
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=40.49 E-value=53 Score=36.62 Aligned_cols=108 Identities=17% Similarity=0.071 Sum_probs=83.0
Q ss_pred HHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hC-CCCHHHHHHHHHHHHHHcCCH
Q 024536 136 SESMDVYYQ-EMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL-------AK-PGDGNVLSMYGDLIWINHKDA 206 (266)
Q Consensus 136 ~eeA~~~y~-rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~-------ld-P~da~al~nla~ll~~~~gd~ 206 (266)
..+++.++. ..-.+.|..+..+..++.+++ ..+|+++|..+..+|.- .+ |+....+.+++.+.+. .+..
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~ 1031 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNL 1031 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCc
Confidence 456666776 666779999999999998776 58999999988776654 33 6667788888876665 5688
Q ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 207 PRAKSYFDRAVHS--------APDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 207 deAi~~~ekAL~l--------~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
..|...+.+|+.+ .|.-+....++..++...++++-|++
T Consensus 1032 ~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1032 SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 8899999988876 45556667788888888788887773
No 428
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.53 E-value=2.7e+02 Score=24.66 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
++++.|-++|--.|+..+-|.-.+..+|.-+....+.-....++++....
T Consensus 55 ~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 55 GDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred ccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 57777777777777777766665555554332223332222245544433
No 429
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=39.25 E-value=3.1e+02 Score=27.66 Aligned_cols=108 Identities=11% Similarity=-0.034 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHHC--------CCCH---HH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAY--------PEDA---LV-------LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~--------P~~~---~a-------l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nl 195 (266)
+.|..|..-|+.||++- |..+ ++ -..+..+| ...++.+.|+....|.|-++|....-|..-
T Consensus 190 k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CY-L~~rkpdlALnh~hrsI~lnP~~frnHLrq 268 (569)
T PF15015_consen 190 KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCY-LRMRKPDLALNHSHRSINLNPSYFRNHLRQ 268 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhh-hhcCCCchHHHHHhhhhhcCcchhhHHHHH
Confidence 56777777777777763 2221 11 11222223 356888999999999999999998888777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 196 GDLIWINHKDAPRAKSYFDRAV---HSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 196 a~ll~~~~gd~deAi~~~ekAL---~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
|.+... ..+|.+|.+-+--|. .++-.+..-...+-.+||++- .++|+
T Consensus 269 AavfR~-LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqam-iEeAi 318 (569)
T PF15015_consen 269 AAVFRR-LERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAM-IEEAI 318 (569)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHH-HHHHH
Confidence 766644 567888776655443 445545556666778888763 34454
No 430
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.25 E-value=69 Score=23.91 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhC
Q 024536 172 VKAEEYCGRAILAK 185 (266)
Q Consensus 172 e~A~~~~erAL~ld 185 (266)
..|..+..+|++.|
T Consensus 4 ~~Ai~~a~~Ave~D 17 (76)
T cd02681 4 RDAVQFARLAVQRD 17 (76)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777777754
No 431
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.06 E-value=3.3e+02 Score=26.23 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=38.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGN--VLSMY--GDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~--al~nl--a~ll~~~~gd~deAi~~~ekAL~l 219 (266)
..++|..|.+.++..+..-|.+.. .+..+ |.-+|. .-|+.+|..++++.+..
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 479999999999999986343333 33333 334466 57899999999988875
No 432
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=39.00 E-value=49 Score=27.70 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536 172 VKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (266)
Q Consensus 172 e~A~~~~erAL~ldP~da~al~nla~ll 199 (266)
+.|+..|+..+++.|++..+|..+-.-+
T Consensus 93 e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 93 ENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 6778888888888888888876665444
No 433
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.67 E-value=2.2e+02 Score=34.12 Aligned_cols=99 Identities=10% Similarity=-0.007 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------H---------HHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--------G---------NVLSMYG 196 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d--------a---------~al~nla 196 (266)
+.++.|-.+.-+|.+.. -+.++.-.|..++ .+||...|+..+++.+..+-.+ | .+...++
T Consensus 1684 G~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~ 1760 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT 1760 (2382)
T ss_pred ccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH
Confidence 68899988888888887 5778888899888 5899999999999999765332 1 1222233
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 197 DLIWINHK--DAPRAKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 197 ~ll~~~~g--d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
.+..+ .+ ....-+.+|+.|.++.|..-.-++.+|.+|-+
T Consensus 1761 ~~~~e-s~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1761 KYLEE-SGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred HHHHH-hcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 22222 22 24567889999999999665556666644443
No 434
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=38.26 E-value=1.9e+02 Score=27.52 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHH
Q 024536 204 KDAPRAKSYFDRAVH 218 (266)
Q Consensus 204 gd~deAi~~~ekAL~ 218 (266)
+++-+|+.+++.|+.
T Consensus 251 ~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 251 SKYGEEVARLRVALA 265 (355)
T ss_pred hhHHHHHHHHHHHHH
Confidence 456666666666555
No 435
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=37.89 E-value=2.3e+02 Score=30.93 Aligned_cols=90 Identities=11% Similarity=0.022 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN----HKDAPRAK 210 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~----~gd~deAi 210 (266)
.+++|+.-|++.- -.|.-|.=|..-|.+ |+..+++++-.++|.-|++.-|++|+.-..--.+.+++ ..+...|.
T Consensus 534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVGAPLEYLGKALV-YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHhc-CCCCCchHHHhHHHH-HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444321 123333333333433 45689999999999999999999997544333333222 12345677
Q ss_pred HHHHHHHHhCCCCHHH
Q 024536 211 SYFDRAVHSAPDDCHV 226 (266)
Q Consensus 211 ~~~ekAL~l~P~da~a 226 (266)
...--|+...|.....
T Consensus 612 ~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 612 VFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHHhCcccccc
Confidence 7777888888876544
No 436
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.49 E-value=1.2e+02 Score=31.18 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=53.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.+..+++|.+..+.-+.-....+..+..-|.++.+ -+..++|-++|++.+..+|++. +..+|.-+...|-..+|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNNDEA--RYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCcch--HHHHHHHHHhhhhhhHHH
Confidence 34567777777777666655666666666666655 5789999999999999999954 445666666666655554
No 437
>PRK11619 lytic murein transglycosylase; Provisional
Probab=36.67 E-value=3.7e+02 Score=27.95 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
.+|.+.+..++...-...-....+++-+|..+..+|+.++|.+
T Consensus 325 ~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~ 367 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEE 367 (644)
T ss_pred ccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666433333455666667777666777776653
No 438
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.28 E-value=44 Score=35.72 Aligned_cols=88 Identities=7% Similarity=-0.031 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 024536 132 SGKESESMDVYYQEMIKAYPED-ALVLANYAKFLKE--------IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202 (266)
Q Consensus 132 ~~~~~eeA~~~y~rALel~P~~-~~al~nlA~~L~~--------~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~ 202 (266)
-.++.++|+...-.+++.+-.. |+.+-..|.++.. ..+..+.|..+|++|.+..|.-... .|++.++...
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aa 333 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAA 333 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHh
Confidence 3467788887777777765433 3444444444321 1234567778888888888764433 2455555443
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 024536 203 HKDAPRAKSYFDRAVHSA 220 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~ 220 (266)
...++...++-+-++.++
T Consensus 334 G~~Fens~Elq~IgmkLn 351 (1226)
T KOG4279|consen 334 GEHFENSLELQQIGMKLN 351 (1226)
T ss_pred hhhccchHHHHHHHHHHH
Confidence 344455555544444443
No 439
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=36.27 E-value=81 Score=31.59 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536 169 GDFVKAEEYCGRAILAK-PGDGN----------VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA 237 (266)
Q Consensus 169 gd~e~A~~~~erAL~ld-P~da~----------al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~ 237 (266)
|++..|++++.+...+. |..+. +-.-+..+|.. .++.+-|+.+-.|.|.++|.+..-+..-|.++...
T Consensus 197 ~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~-~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L 275 (569)
T PF15015_consen 197 GRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR-MRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL 275 (569)
T ss_pred HHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh-cCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence 44555555555544442 33221 12234555555 67899999999999999999988888888888888
Q ss_pred CCcccccc
Q 024536 238 GEEEDDDD 245 (266)
Q Consensus 238 G~~~eA~~ 245 (266)
.++.+|.+
T Consensus 276 eRy~eAar 283 (569)
T PF15015_consen 276 ERYSEAAR 283 (569)
T ss_pred HHHHHHHH
Confidence 99888874
No 440
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=36.08 E-value=2e+02 Score=22.38 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536 203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG 238 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G 238 (266)
.||+.+|++...++.+..++..-.+..-|.+-..+|
T Consensus 72 ~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 72 EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 699999999999997775554434433344433333
No 441
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.92 E-value=58 Score=36.31 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD 197 (266)
Q Consensus 134 ~~~eeA~~~y~rALel--------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--------dP~da~al~nla~ 197 (266)
+++++|+...++|.-+ .|+....+.|++.+.+ ..+....|...+.+|+++ .|.-+....++..
T Consensus 987 ~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f-~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~ 1065 (1236)
T KOG1839|consen 987 GDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEF-AVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLEL 1065 (1236)
T ss_pred cchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHH-hccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHH
Confidence 6778888877777554 2455677778876554 345777888888888874 3455556677887
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCccccccc
Q 024536 198 LIWINHKDAPRAKSYFDRAVHSAPD--------DCHVLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 198 ll~~~~gd~deAi~~~ekAL~l~P~--------da~a~~~lA~ll~~~G~~~eA~~~ 246 (266)
++.. .++++.|+.+.+.|++++-. .+..+..++.++.-.+++..|.++
T Consensus 1066 l~~~-v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1066 LLLG-VEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHhh-HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 6654 47899999999999997532 233456677777777777776643
No 442
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=35.87 E-value=2.8e+02 Score=23.67 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=32.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
.+|.-++-.+.+.....-+-.+|+.+.-+|.+|.. .|+..+|..++++|-+.
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELLKEACEK 149 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHHHHHHHh
Confidence 35666777777777766555677888888887755 68888888888888664
No 443
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=35.58 E-value=1.9e+02 Score=26.88 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=9.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 024536 203 HKDAPRAKSYFDRAVH 218 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~ 218 (266)
.+++-+|+.+++.|+.
T Consensus 264 ~~~~G~aia~L~~A~~ 279 (345)
T cd09034 264 ANKIGEAIARLQAALE 279 (345)
T ss_pred cccHHHHHHHHHHHHH
Confidence 3456666666666654
No 444
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=35.50 E-value=1.2e+02 Score=29.14 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024536 172 VKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLA 228 (266)
Q Consensus 172 e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~ 228 (266)
++|+.+|++|+.. ++.|..-+|+..|+.|+.+-|+--.++.
T Consensus 17 kkA~~l~~~av~~----------------Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 17 KKAIALYEKAVLK----------------EQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHH----------------hhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 6777777777542 4468888999999999999776544443
No 445
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=35.19 E-value=1.7e+02 Score=28.98 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024536 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP 221 (266)
Q Consensus 152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P 221 (266)
+++..|..||.... .+|+++-|+.+|+++=. +..+..++ ...|+.++=.++.+.|....-
T Consensus 345 ~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~~d--------~~~L~lLy-~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 345 DDPEKWKQLGDEAL-RQGNIELAEECYQKAKD--------FSGLLLLY-SSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp STHHHHHHHHHHHH-HTTBHHHHHHHHHHCT---------HHHHHHHH-HHCT-HHHHHHHHHHHHHTT-
T ss_pred CcHHHHHHHHHHHH-HcCCHHHHHHHHHhhcC--------ccccHHHH-HHhCCHHHHHHHHHHHHHccC
Confidence 45677888887654 57999999999998732 22333333 347777766666666655443
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.15 E-value=1.1e+02 Score=27.43 Aligned_cols=54 Identities=17% Similarity=0.058 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCccccc
Q 024536 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~~eA~ 244 (266)
.+...+|..++. .|++++|+.+|+++...--.. ..++..+..+....|+.++.+
T Consensus 179 ~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 179 YLSLEMAEEYFR-LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 445567877776 799999999999996553321 234556666777777766554
No 447
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=34.99 E-value=1e+02 Score=18.30 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 024536 175 EEYCGRAILAKPGDGNVLSMYGD 197 (266)
Q Consensus 175 ~~~~erAL~ldP~da~al~nla~ 197 (266)
+.+..++|..+|.+-.+|...-.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ 25 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRW 25 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHH
Confidence 34555555555555555544433
No 448
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=2.3e+02 Score=27.46 Aligned_cols=16 Identities=6% Similarity=-0.184 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHHHC
Q 024536 135 ESESMDVYYQEMIKAY 150 (266)
Q Consensus 135 ~~eeA~~~y~rALel~ 150 (266)
-..+|+.+..+|+..+
T Consensus 6 ~l~kaI~lv~kA~~eD 21 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDED 21 (439)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4578888888888764
No 449
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.46 E-value=2.1e+02 Score=27.81 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=61.8
Q ss_pred HHHHHH-HHHHHCCCCHHHHHHHHHHHHHHc-CCHHHH----------------HHHHHHHHHh-CC-CCHHHHHHHHHH
Q 024536 139 MDVYYQ-EMIKAYPEDALVLANYAKFLKEIR-GDFVKA----------------EEYCGRAILA-KP-GDGNVLSMYGDL 198 (266)
Q Consensus 139 A~~~y~-rALel~P~~~~al~nlA~~L~~~~-gd~e~A----------------~~~~erAL~l-dP-~da~al~nla~l 198 (266)
|..++. +..+.+|.-+.-|.++..++.+.. .++..| .+.|.--+.- .+ =|+.-...++..
T Consensus 4 ~~~~L~~~~~~a~~~l~~ew~~leeLy~eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslvei~l~ 83 (380)
T KOG2908|consen 4 APDYLQTQLKSANPSLAAEWDRLEELYEEKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVEILLV 83 (380)
T ss_pred HHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 445666 677788888888888877553210 112112 2222222211 01 122222233333
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC----CHH--HHHHHHHHHHHcCCccccccc
Q 024536 199 IWINHKDAPRAKSYFDRAVHSAPD----DCH--VLASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 199 l~~~~gd~deAi~~~ekAL~l~P~----da~--a~~~lA~ll~~~G~~~eA~~~ 246 (266)
..+...|.++|++++++.++.--. ++. .....|.++...++..++.+.
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ 137 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKL 137 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHH
Confidence 445567999999999998764321 233 355778889999999888854
No 450
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.43 E-value=81 Score=30.79 Aligned_cols=81 Identities=9% Similarity=-0.029 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 024536 169 GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD---------------------D---- 223 (266)
Q Consensus 169 gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~---------------------d---- 223 (266)
.+..+-++....||+++|..+.+|..+|.- + .--..+|+.+|++|++..-. |
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--E-a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl 274 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEE--E-ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVL 274 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhh--h-hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchh
Confidence 445666777888999999999998877642 2 33577888899888875321 0
Q ss_pred HHHHHHHHHHHHHcCCccccccccccccc
Q 024536 224 CHVLASYARFLWDAGEEEDDDDGDDQETC 252 (266)
Q Consensus 224 a~a~~~lA~ll~~~G~~~eA~~~~~~~~~ 252 (266)
.++...+|..-.++|+..||++..-+-++
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11344677777888888888876444333
No 451
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=34.16 E-value=1.2e+02 Score=31.14 Aligned_cols=76 Identities=12% Similarity=-0.004 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
.||+-.|-+-...+|+..|.+|......+.+..+ .|+|+.|.+.+.-+=.+-.....+..-+-.-+...+++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~-lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSH-LGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHH-hhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 5999999999999999999999988888877765 689998887765443332222222222334455556666655
No 452
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.04 E-value=1.7e+02 Score=31.48 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHH--HHc
Q 024536 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-----GD---GNVLSMYGDLIW--INH 203 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP-----~d---a~al~nla~ll~--~~~ 203 (266)
+..+.|+.+|++|.+..|..- .=.|+|.+|...-..++..+++-.-++.++- .. -.-|+..|.++- -+.
T Consensus 301 ~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLA 379 (1226)
T KOG4279|consen 301 ESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLA 379 (1226)
T ss_pred hhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhc
Confidence 567899999999999999643 2245665554323344555555444444432 11 112222222110 124
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536 204 KDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235 (266)
Q Consensus 204 gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~ 235 (266)
.|+.+|+..-++..+++|-..+....+..+++
T Consensus 380 nd~~kaiqAae~mfKLk~P~WYLkS~meni~l 411 (1226)
T KOG4279|consen 380 NDYQKAIQAAEMMFKLKPPVWYLKSTMENILL 411 (1226)
T ss_pred cCHHHHHHHHHHHhccCCceehHHHHHHHHHH
Confidence 79999999999999999987666555554443
No 453
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=32.46 E-value=3.5e+02 Score=28.03 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=66.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------CCCCHHHHHHH----
Q 024536 140 DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------------------KPGDGNVLSMY---- 195 (266)
Q Consensus 140 ~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--------------------dP~da~al~nl---- 195 (266)
-..+.|.++.+-++...-..|+..|. +.+..++..+|.+|+.. -|+|-+....+
T Consensus 118 ~~lWer~ve~dfnDvv~~ReLa~~yE--kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~ki 195 (711)
T COG1747 118 YSLWERLVEYDFNDVVIGRELADKYE--KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKI 195 (711)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHH--HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34777888888888887778887653 36667777777777652 24444332221
Q ss_pred --------HHHH-------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 196 --------GDLI-------WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 196 --------a~ll-------~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
+.++ +....++++|+..+.-.++++..|..|+-++-..++.
T Consensus 196 qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 196 QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 1111 1223689999999999999999999999998888877
No 454
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.22 E-value=88 Score=23.60 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHhC
Q 024536 169 GDFVKAEEYCGRAILAK 185 (266)
Q Consensus 169 gd~e~A~~~~erAL~ld 185 (266)
+-|++|.++..+||..+
T Consensus 3 ~~~~~A~~~I~kaL~~d 19 (79)
T cd02679 3 GYYKQAFEEISKALRAD 19 (79)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 34678888888887765
No 455
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.19 E-value=2.4e+02 Score=21.88 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=21.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGD 197 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ 197 (266)
..||+++|++...++-+..+..+-.+..-|.
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~ 101 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAAR 101 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4799999999999997775544444433333
No 456
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=31.94 E-value=1.1e+02 Score=25.54 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCccccc
Q 024536 227 LASYARFLWDAGEEEDDD 244 (266)
Q Consensus 227 ~~~lA~ll~~~G~~~eA~ 244 (266)
..++|.|+..+|+.+=+.
T Consensus 53 CHNLA~FWR~~gd~~yEL 70 (140)
T PF10952_consen 53 CHNLADFWRSQGDSDYEL 70 (140)
T ss_pred HhhHHHHHHHcCChHHHH
Confidence 678999999999877665
No 457
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=31.68 E-value=4.2e+02 Score=24.89 Aligned_cols=92 Identities=12% Similarity=-0.046 Sum_probs=67.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024536 145 EMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDC 224 (266)
Q Consensus 145 rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da 224 (266)
++.-++++.+......+.|+....| -++|...+-..+..+ .+......|.++-+ =+-..|+..+.+.+...-.++
T Consensus 160 r~~lld~t~~l~~Ry~amF~LRn~g-~EeaI~al~~~l~~~--SalfrhEvAfVfGQ--l~s~~ai~~L~k~L~d~~E~p 234 (289)
T KOG0567|consen 160 RAELLDETKPLFERYRAMFYLRNIG-TEEAINALIDGLADD--SALFRHEVAFVFGQ--LQSPAAIPSLIKVLLDETEHP 234 (289)
T ss_pred HHHHHhcchhHHHHHhhhhHhhccC-cHHHHHHHHHhcccc--hHHHHHHHHHHHhh--ccchhhhHHHHHHHHhhhcch
Confidence 3444567777777777776542222 388888887777766 55555566665544 346889999999999999999
Q ss_pred HHHHHHHHHHHHcCCcc
Q 024536 225 HVLASYARFLWDAGEEE 241 (266)
Q Consensus 225 ~a~~~lA~ll~~~G~~~ 241 (266)
+++.-.|.+|-.+++.+
T Consensus 235 MVRhEaAeALGaIa~e~ 251 (289)
T KOG0567|consen 235 MVRHEAAEALGAIADED 251 (289)
T ss_pred HHHHHHHHHHHhhcCHH
Confidence 99999999888887754
No 458
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=31.31 E-value=1.6e+02 Score=24.75 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=24.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFL 234 (266)
Q Consensus 202 ~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll 234 (266)
.+-+.+.|+.+|+..+++.|++-.++..|..-+
T Consensus 88 aKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 88 AKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp TTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 356889999999999999999988876665433
No 459
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=30.98 E-value=1.5e+02 Score=30.59 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 137 ESMDVYYQEMIKA-----YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 137 eeA~~~y~rALel-----~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
..++++|.+||.. +-.+..-|..+|.+++ ..++|.+|+.++-.|-.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~y-R~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYY-RHKRYREALRSWAEAAD 346 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHH-HHHHHHHHHHHHHHHHH
Confidence 4456677777765 3345566677777777 58999999998877744
No 460
>PF15469 Sec5: Exocyst complex component Sec5
Probab=30.15 E-value=3.3e+02 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=15.2
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 024536 167 IRGDFVKAEEYCGRAILAK 185 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ld 185 (266)
..|+|+.|...|.+|-.+-
T Consensus 98 ~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HcCcHHHHHHHHHHHHHHH
Confidence 3688888888888887764
No 461
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=29.98 E-value=2.5e+02 Score=21.38 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536 169 GDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199 (266)
Q Consensus 169 gd~e~A~~~~erAL~ldP~da~al~nla~ll 199 (266)
++...++.-...+++.+|+||.++..|-..+
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l 51 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKL 51 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4455566666667788888888877665443
No 462
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=29.92 E-value=17 Score=36.67 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHH--HhCCCCH-HHHHHHHHHHHHHcCCHHHHHHH
Q 024536 137 ESMDVYYQEMIKAYPEDALVLANYA-KFLKEIRGDFVKAEEYCGRAI--LAKPGDG-NVLSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 137 eeA~~~y~rALel~P~~~~al~nlA-~~L~~~~gd~e~A~~~~erAL--~ldP~da-~al~nla~ll~~~~gd~deAi~~ 212 (266)
..|..|+++|=...+....-|...| ..+. ..|+++.|...+.+.- .++|... +.....|.+.+. ++++++|+..
T Consensus 6 ~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l-~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~-~~~~~~Al~~ 83 (536)
T PF04348_consen 6 QAAEQYLQQAQQASGEQRAQLLLLAARALL-QEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALA-QGDPEQALSL 83 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-hCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHh-cCCHHHHHHH
Confidence 4566677777777775554444443 3343 5799999999998776 3445433 233334444444 7899999999
Q ss_pred HHH--HHHhCCC-CHHHHHHHHHHHHHcCCcccccc
Q 024536 213 FDR--AVHSAPD-DCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 213 ~ek--AL~l~P~-da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
+.. ...+.+. ...++...|.++...++.-+|.+
T Consensus 84 L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~ 119 (536)
T PF04348_consen 84 LNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAAR 119 (536)
T ss_dssp ------------------------------------
T ss_pred hccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 874 2222221 12345566778888888777774
No 463
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.74 E-value=2e+02 Score=28.00 Aligned_cols=78 Identities=24% Similarity=0.231 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC--CHHH-HHHHHHHHHHHcCCHHHHHHH
Q 024536 138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEY--CGRAILAKPG--DGNV-LSMYGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 138 eA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~--~erAL~ldP~--da~a-l~nla~ll~~~~gd~deAi~~ 212 (266)
.-..++++-..+-|+..+.++.||.+.++ +|+|..|..| |=|++--+|+ ...+ |.-+|.=.. ..+++.|.+-
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqye-CGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL--~qnWd~A~ed 189 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYE-CGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL--TQNWDGALED 189 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH--HhhHHHHHHH
Confidence 44556677777788899999999999985 8999888774 4555555544 2333 333443222 3578999887
Q ss_pred HHHHHH
Q 024536 213 FDRAVH 218 (266)
Q Consensus 213 ~ekAL~ 218 (266)
+-|.-+
T Consensus 190 L~rLre 195 (432)
T KOG2758|consen 190 LTRLRE 195 (432)
T ss_pred HHHHHH
Confidence 766544
No 464
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.42 E-value=1.3e+02 Score=30.60 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536 195 YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 195 la~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~ 244 (266)
+|.--+. +|+|--+.+++++++-.+|+|..+..-+|.+|-+.|=-.|..
T Consensus 458 la~ea~~-kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 458 LAREAFD-KGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHh-cccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 3333344 799999999999999999999999999999999988655544
No 465
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.22 E-value=3.6e+02 Score=28.41 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=40.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 142 ~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
+.++||++.++... .+.++ + ..|+++.|..+.. .-++..=|..||.+... .+++..|.++|.+|..+
T Consensus 629 ~~e~AL~~s~D~d~-rFela--l--~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 629 MKEQALELSTDPDQ-RFELA--L--KLGRLDIAFDLAV-----EANSEVKWRQLGDAALS-AGELPLASECFLRARDL 695 (794)
T ss_pred chHhhhhcCCChhh-hhhhh--h--hcCcHHHHHHHHH-----hhcchHHHHHHHHHHhh-cccchhHHHHHHhhcch
Confidence 44556666554321 12222 1 2456666554333 33556677788887765 78999999999998654
No 466
>PHA00370 III attachment protein
Probab=28.78 E-value=3.2e+02 Score=25.47 Aligned_cols=22 Identities=5% Similarity=-0.298 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 024536 203 HKDAPRAKSYFDRAVHSAPDDC 224 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~P~da 224 (266)
+++..+++..+++.-.+.--.+
T Consensus 252 ~geVYe~~I~CdKId~~k~v~s 273 (297)
T PHA00370 252 QGKVYEFIIGCDKINDFKGVFA 273 (297)
T ss_pred ccchhhhhhcchhHHHHHHHHH
Confidence 4567777777777766654433
No 467
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.31 E-value=2.8e+02 Score=22.44 Aligned_cols=36 Identities=14% Similarity=-0.030 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536 154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190 (266)
Q Consensus 154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~ 190 (266)
|-.|..||.++. ..|+-+.|.+-|+.--++-|..+.
T Consensus 72 PG~HAhLGlLys-~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 72 PGYHAHLGLLYS-NSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred CcHHHHHHHHHh-hcCChHHHHHHHHHhhhhCccchh
Confidence 345555554432 455556666666665555565544
No 468
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=28.15 E-value=1.3e+02 Score=17.31 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=9.8
Q ss_pred cCCHHHHHHHHHHHHH
Q 024536 203 HKDAPRAKSYFDRAVH 218 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~ 218 (266)
.|+++.|..+|+.-.+
T Consensus 14 ~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 14 AGDPDAALQLFDEMKE 29 (34)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5666666666665544
No 469
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=79 Score=31.42 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHH--HHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024536 134 KESESMDVYYQEMI--KAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG 189 (266)
Q Consensus 134 ~~~eeA~~~y~rAL--el~P~~--~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da 189 (266)
+.|+.|..+..++. +.+-++ +-.++.+|.+- ..+.||..|.++|-+|+...|++.
T Consensus 223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk-aiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK-AIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH-HhhcchhHHHHHHHHHHHhCcchh
Confidence 46777777766665 122222 23334445543 367999999999999999999854
No 470
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=27.92 E-value=1.8e+02 Score=27.37 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536 204 KDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245 (266)
Q Consensus 204 gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~ 245 (266)
...-+|+.+++.++..+|.|......+..+|...|-...|.+
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~ 238 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALE 238 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 347889999999999999999999999999999999999974
No 471
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.90 E-value=3.8e+02 Score=26.12 Aligned_cols=47 Identities=6% Similarity=-0.058 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 024536 134 KESESMDVYYQEMIKAYPE-----DALVLANYAKFLK-EIRGDFVKAEEYCGR 180 (266)
Q Consensus 134 ~~~eeA~~~y~rALel~P~-----~~~al~nlA~~L~-~~~gd~e~A~~~~er 180 (266)
.+|..|.+.|+.++...+. ....+.+++..+. -..=++++|..++++
T Consensus 144 ~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 144 FDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred cChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 7889999999999988642 2234455554432 135688999999986
No 472
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=27.18 E-value=41 Score=21.45 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 024536 191 VLSMYGDLIWINH--KDAPRAKSYFDRAV 217 (266)
Q Consensus 191 al~nla~ll~~~~--gd~deAi~~~ekAL 217 (266)
..++||+++.... .|..+.+.+++..+
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~ 31 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELY 31 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3444554443311 12344444444443
No 473
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=26.40 E-value=1.6e+02 Score=29.79 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536 171 FVKAEEYCGRAILAKPGDGNV-LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH 225 (266)
Q Consensus 171 ~e~A~~~~erAL~ldP~da~a-l~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~ 225 (266)
--.|..-|..||..+|.-|.- +..|-.++..-++|---.+..|+-.++.+|.-+.
T Consensus 328 rR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAa 383 (615)
T KOG3540|consen 328 RRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAA 383 (615)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 356777777777777766632 2222222222244555567777777777776543
No 474
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=26.13 E-value=94 Score=30.21 Aligned_cols=11 Identities=45% Similarity=0.978 Sum_probs=5.4
Q ss_pred CCCCCCC-Cccc
Q 024536 84 GGGEDGQ-GEFS 94 (266)
Q Consensus 84 ~~~~~~~-~~f~ 94 (266)
.++.+++ +.|.
T Consensus 332 ~ggrgggkg~f~ 343 (465)
T KOG3973|consen 332 QGGRGGGKGTFD 343 (465)
T ss_pred CCCcCCCCCCCc
Confidence 3344444 5684
No 475
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.09 E-value=2.2e+02 Score=30.79 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAIL 183 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ 183 (266)
.++..||..|+ .+|++++|...|-++|.
T Consensus 369 ~i~~kYgd~Ly-~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 369 EIHRKYGDYLY-GKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHcc
Confidence 56677777776 47778888877777776
No 476
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=25.93 E-value=2.2e+02 Score=21.67 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536 203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARF 233 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~P~da~a~~~lA~l 233 (266)
.++.-+++.--.++++.+|+||.++..|-..
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~ 50 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDPALLAAYQSK 50 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 3455666666667888999999887665543
No 477
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.78 E-value=2.7e+02 Score=31.45 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HH
Q 024536 169 GDFVKAEEYCGRAILAK-PGDGNVLSMYG--------------DLIWINHKDAPRAKSYFDRAVHSAPDDC-------HV 226 (266)
Q Consensus 169 gd~e~A~~~~erAL~ld-P~da~al~nla--------------~ll~~~~gd~deAi~~~ekAL~l~P~da-------~a 226 (266)
-+.+.-+...+++|.++ |..++-..+++ .++.+.++|..+|..+...|.+....-- .+
T Consensus 1489 adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V 1568 (1758)
T KOG0994|consen 1489 ADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDV 1568 (1758)
T ss_pred CCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677777777887775 66665444443 2445667899999999888877654321 23
Q ss_pred HHHHHHHHHHcCCccccccc
Q 024536 227 LASYARFLWDAGEEEDDDDG 246 (266)
Q Consensus 227 ~~~lA~ll~~~G~~~eA~~~ 246 (266)
..+|..+-..++..++|+++
T Consensus 1569 ~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1569 VEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555555666666643
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.45 E-value=2.3e+02 Score=23.13 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536 150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWINHKDAPRAKSYFDR 215 (266)
Q Consensus 150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~da~al~nla~ll~~~~gd~deAi~~~ek 215 (266)
||....+|..|+.. .. ++..+|....... -..+..|..+|.++. .+|++.+|.++|++
T Consensus 65 D~RyLkiWi~ya~~----~~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE-~~g~~~~A~~iy~~ 124 (125)
T smart00777 65 DPRYLKIWLKYADN----CD---EPRELFQFLYSKGIGTKLALFYEEWAQLLE-AAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHHHh----cC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHH-HcCCHHHHHHHHHc
Confidence 34444555556542 23 3455666655544 334555556676653 47888888887764
No 479
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=25.37 E-value=3.3e+02 Score=25.88 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 192 LSMYGDLIWINHKDAPRAKSYFDRAVH 218 (266)
Q Consensus 192 l~nla~ll~~~~gd~deAi~~~ekAL~ 218 (266)
++..|..+.. .+++-+|+..++.|..
T Consensus 250 ~~~~a~~~~~-~~k~GeaIa~L~~A~~ 275 (353)
T cd09246 250 LYRAAKDLHE-KEDIGEEIARLRAASD 275 (353)
T ss_pred HHHHHHHhHH-hcchHHHHHHHHHHHH
Confidence 4444544444 4678888888877755
No 480
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=25.35 E-value=1e+02 Score=30.22 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHh
Q 024536 206 APRAKSYFDRAVHS 219 (266)
Q Consensus 206 ~deAi~~~ekAL~l 219 (266)
|.+|+.++++|-..
T Consensus 378 Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 378 YKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 45555555555443
No 481
>PRK12798 chemotaxis protein; Reviewed
Probab=25.34 E-value=6.8e+02 Score=24.86 Aligned_cols=62 Identities=15% Similarity=0.016 Sum_probs=47.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024536 167 IRGDFVKAEEYCGRAILAKPGDG--NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLA 228 (266)
Q Consensus 167 ~~gd~e~A~~~~erAL~ldP~da--~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~ 228 (266)
...|..+|+.+|+.|-.+.|.-- ++-....+++....|+.+++..|-.+.+..-.+.+++..
T Consensus 160 ~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~ 223 (421)
T PRK12798 160 VATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQ 223 (421)
T ss_pred cccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHH
Confidence 46788999999999999999854 343344445545579999999999999998888887643
No 482
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=24.12 E-value=1e+02 Score=30.31 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536 206 APRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239 (266)
Q Consensus 206 ~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~ 239 (266)
+.+|+.|+++|.. -++|..|.++|.++...|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 3445555555544 3344444444444444443
No 483
>PRK12798 chemotaxis protein; Reviewed
Probab=24.08 E-value=7.2e+02 Score=24.70 Aligned_cols=102 Identities=11% Similarity=0.001 Sum_probs=57.8
Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536 142 YYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS 219 (266)
Q Consensus 142 ~y~rALel~P~-~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld-P~da~al~nla~ll~~~~gd~deAi~~~ekAL~l 219 (266)
.++..++.++. +.+.-...|..-| ..|+-++|.+.+...-... |..--.+..|.........|..+|+.+|+.|.-+
T Consensus 99 vlr~L~~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl 177 (421)
T PRK12798 99 TLRKLLARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL 177 (421)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh
Confidence 45555555553 2222222222223 4788888888776554332 2222334344433334478999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHHcCCccccc
Q 024536 220 APDDCH---VLASYARFLWDAGEEEDDD 244 (266)
Q Consensus 220 ~P~da~---a~~~lA~ll~~~G~~~eA~ 244 (266)
.|..-- ++..--.+.-+.|+.+.+.
T Consensus 178 aPGTLvEEAALRRsi~la~~~g~~~rf~ 205 (421)
T PRK12798 178 APGTLVEEAALRRSLFIAAQLGDADKFE 205 (421)
T ss_pred CCchHHHHHHHHHhhHHHHhcCcHHHHH
Confidence 998542 3333333445566666554
No 484
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.58 E-value=1.6e+02 Score=27.90 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCC---
Q 024536 136 SESMDVYYQEMIKAYPEDALVLANYAKFLK-----EIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI--NHKD--- 205 (266)
Q Consensus 136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~-----~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~--~~gd--- 205 (266)
+..-....++.|+.||.|--.|...-.++. ....++....++---+|.-|+.|..+|.+.-.+... ..|+
T Consensus 126 ~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~vis 205 (328)
T COG5536 126 WGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVIS 205 (328)
T ss_pred cchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccch
Confidence 444455678888888888766644322220 012345666788888999999999999876332211 1333
Q ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536 206 ---APRAKSYFDRAVHSAPDDCHVLASYARFLWD 236 (266)
Q Consensus 206 ---~deAi~~~ekAL~l~P~da~a~~~lA~ll~~ 236 (266)
+++-+.+...++-.+|++-.+|..+-.+.-.
T Consensus 206 qk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 206 QKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 6777889999999999999988777655443
No 485
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=23.03 E-value=6.2e+02 Score=26.17 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHH-HHHHHHHHcCCHHHHHHH
Q 024536 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAI-LAKPGDGNVLSM-YGDLIWINHKDAPRAKSY 212 (266)
Q Consensus 135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL-~ldP~da~al~n-la~ll~~~~gd~deAi~~ 212 (266)
-...+..|++++-+..+++..-|..+|.......++.++|...+.+.- .+.|..-.-+.. .+.+... ++++..|..+
T Consensus 43 a~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la-~~q~~~Al~~ 121 (604)
T COG3107 43 ANASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALA-QKQPAAALQQ 121 (604)
T ss_pred cchhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHh-ccChHHHHHH
Confidence 345666778888888888877777776544335799999999998876 444443322222 3344433 6788999888
Q ss_pred HHHHHH
Q 024536 213 FDRAVH 218 (266)
Q Consensus 213 ~ekAL~ 218 (266)
+.+...
T Consensus 122 L~~~~~ 127 (604)
T COG3107 122 LAKLLP 127 (604)
T ss_pred Hhhcch
Confidence 877543
No 486
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=23.02 E-value=3e+02 Score=26.85 Aligned_cols=41 Identities=22% Similarity=0.116 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536 155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196 (266)
Q Consensus 155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla 196 (266)
..|..-|.+|. ..|+.++|...|++||.+.++.++..+...
T Consensus 366 ~~h~~RadlL~-rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 366 LYHAARADLLA-RLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ccHHHHHHHHH-HhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 45566677775 579999999999999999999988765443
No 487
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.84 E-value=3.7e+02 Score=25.52 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536 174 AEEYCGRAILAK-------PGDGNVLSMYGDLIWINHKDAPRAKSYFDRA 216 (266)
Q Consensus 174 A~~~~erAL~ld-------P~da~al~nla~ll~~~~gd~deAi~~~ekA 216 (266)
=..+.++||+=. -.+|..|..+|..+|. .+++.+|..+|-.+
T Consensus 105 r~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~-e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 105 RKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWT-EDNVEEARRHFLLS 153 (312)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cccHHHHHhHhhhc
Confidence 344555665522 2477888888888877 56788888877543
No 488
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=20.77 E-value=5.6e+02 Score=24.22 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 193 SMYGDLIWINHKDAPRAKSYFDRAVH 218 (266)
Q Consensus 193 ~nla~ll~~~~gd~deAi~~~ekAL~ 218 (266)
+..|..+.. .+++-+|+..++.|..
T Consensus 259 y~~a~~~~e-~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 259 YHQSLVAKA-QKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHhhh-hchHHHHHHHHHHHHH
Confidence 334433333 4667777777777765
No 489
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.61 E-value=2.3e+02 Score=30.65 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-------CHHHHHHHHHHHHHc
Q 024536 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA-PD-------DCHVLASYARFLWDA 237 (266)
Q Consensus 189 a~al~nla~ll~~~~gd~deAi~~~ekAL~l~-P~-------da~a~~~lA~ll~~~ 237 (266)
.+++..||..++. +||+++|..+|-++|..- |. ++.-..+|..+++..
T Consensus 368 ~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L 423 (933)
T KOG2114|consen 368 AEIHRKYGDYLYG-KGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEAL 423 (933)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3678889999987 899999999999988632 22 344445555555544
No 490
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=20.54 E-value=1.8e+02 Score=28.78 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcccccccccc
Q 024536 203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA-GEEEDDDDGDDQ 249 (266)
Q Consensus 203 ~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~-G~~~eA~~~~~~ 249 (266)
.++|.-|..+.+|.|++.|....+...- .++... ...-+|.+++.+
T Consensus 313 ~KNf~tAa~FArRLLel~p~~~~a~qAr-Kil~~~e~~~tDa~~i~yD 359 (422)
T PF06957_consen 313 LKNFITAASFARRLLELNPSPEVAEQAR-KILQACERNPTDAHEIDYD 359 (422)
T ss_dssp TTBHHHHHHHHHHHHCT--SCHHHHHHH-HHHHHHCCS--BSS--S--
T ss_pred hccHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHhcCCCCceecCCC
Confidence 5899999999999999999877554333 333333 345667776544
No 491
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=20.41 E-value=6.4e+02 Score=24.59 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=29.3
Q ss_pred HHcCCHHHHHHHHHHHHHhC-----CCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536 166 EIRGDFVKAEEYCGRAILAK-----PGDGNVL--SMYGDLIWINHKDAPRAKSYFDRAVH 218 (266)
Q Consensus 166 ~~~gd~e~A~~~~erAL~ld-----P~da~al--~nla~ll~~~~gd~deAi~~~ekAL~ 218 (266)
+..+|.++|.++.++.++.- | ++-++ ...+.++.. .+|..++.+.++..-.
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~-~av~~~~t~~~r~~L~-i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEP-DAVIYILTEIARLKLE-INDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHH
Confidence 34567788888887777631 2 23332 234445544 5777777666655544
Done!