Query 024538
Match_columns 266
No_of_seqs 156 out of 764
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.4 0.0029 9.9E-08 48.0 11.5 72 89-160 32-104 (110)
2 2i68_A Protein EMRE; transmemb 97.1 0.00063 2.1E-08 53.9 5.5 72 90-161 33-105 (137)
3 2xtc_A F-box-like/WD repeat-co 9.3 1.3E+02 0.0044 21.4 1.5 12 28-39 8-19 (90)
4 2nml_A Enhancer of rudimentary 7.1 3.4E+02 0.012 19.7 3.0 21 185-205 25-45 (104)
5 4dve_A Biotin transporter BIOY 5.0 1.2E+03 0.042 18.5 10.2 162 85-261 15-185 (198)
6 1vf5_F Protein PET M; photosyn 4.9 5.8E+02 0.02 14.7 2.8 17 143-159 4-20 (35)
7 1q90_M Cytochrome B6F complex 4.9 6.2E+02 0.021 15.0 2.8 17 143-159 5-21 (39)
8 2ekk_A UBA domain from E3 ubiq 4.8 4.7E+02 0.016 15.4 2.3 17 228-244 31-47 (47)
9 2ao6_B NCOA-2, 14-MER fragment 4.4 1.5E+02 0.0052 15.7 -0.3 7 104-110 15-21 (26)
10 1wgn_A UBAP1, ubiquitin associ 3.8 2.7E+02 0.0092 18.4 0.5 16 230-245 44-59 (63)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.36 E-value=0.0029 Score=47.96 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhHHhhhcCChhHHHHH-hhcchHHHHHHHHHHhccccChhhHHHHHHHHHhhHHhhcc
Q 024538 89 KYCLVSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILF 160 (266)
Q Consensus 89 ~y~~~s~~~~~a~~~~n~aL~yvs~p~~~l~-KS~k~ipvmi~~~l~~~kry~~~~~~~v~~it~Gv~lf~~~ 160 (266)
.+....+.+..+..+-+.++|++|.+.--.. .+..++-+.+.++++++++.++.+++.+.++..|+++....
T Consensus 32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3455566788888999999999999988665 89999999999999999999999999999999999988765
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.11 E-value=0.00063 Score=53.89 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCChhHHHHH-hhcchHHHHHHHHHHhccccChhhHHHHHHHHHhhHHhhccC
Q 024538 90 YCLVSMSNILTTTCQYEALKYVSFPVQTLA-KCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 161 (266)
Q Consensus 90 y~~~s~~~~~a~~~~n~aL~yvs~p~~~l~-KS~k~ipvmi~~~l~~~kry~~~~~~~v~~it~Gv~lf~~~~ 161 (266)
+....+++..+..+-+.+++++|.+.-... .+..++.++++++++++++.++.+++.++++.+|+++....+
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 355567888899999999999999955444 889999999999999999999999999999999999988764
No 3
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=9.31 E-value=1.3e+02 Score=21.45 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.1
Q ss_pred HHHHHHHhhhhh
Q 024538 28 TTLVIYGILQEK 39 (266)
Q Consensus 28 ~~~l~~g~~qE~ 39 (266)
+.|++|.|+||-
T Consensus 8 vN~LI~RYLqEs 19 (90)
T 2xtc_A 8 VNFLVYRYLQES 19 (90)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 468999999986
No 4
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=7.12 E-value=3.4e+02 Score=19.73 Aligned_cols=21 Identities=10% Similarity=0.136 Sum_probs=18.2
Q ss_pred HHHHHhHhHHHHHHHHHccCC
Q 024538 185 GYLGFDGFTSTFQDKLFKGYD 205 (266)
Q Consensus 185 ~sl~~dg~~~~~qe~~~~~~~ 205 (266)
+..++||+...++|++.+.+.
T Consensus 25 v~~~megiC~iYE~~LK~~nP 45 (104)
T 2nml_A 25 VNECMEGVCKMYEEHLKRMNP 45 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 578899999999999988653
No 5
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=4.96 E-value=1.2e+03 Score=18.53 Aligned_cols=162 Identities=11% Similarity=0.025 Sum_probs=82.6
Q ss_pred cchhHHHHHHHHHHHHHHHhHHh---hhcCChhHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHHHHhhHHhhccC
Q 024538 85 APVYKYCLVSMSNILTTTCQYEA---LKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGCSIFILFP 161 (266)
Q Consensus 85 ~p~~~y~~~s~~~~~a~~~~n~a---L~yvs~p~~~l~KS~k~ipvmi~~~l~~~kry~~~~~~~v~~it~Gv~lf~~~~ 161 (266)
...|+...++++.....+++..+ +-..|+|. ..-...||+.+.++..|+=.....+=+++-.+|+=+|.-++
T Consensus 15 ~k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~ 89 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGN 89 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCC
Confidence 45677888888888877777653 33323332 23345788999887766655555555555556666665431
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHhHhHHHHHHHHHccCCCChhhHHHHhhHHHHHHH----HHHH-HhhC-cHHH
Q 024538 162 SGADLSPYSKGRENTVWGVSLMVGYLGFDGFTSTFQDKLFKGYDMEIHNQIFYTTLCSCVLS----LSGL-ILEG-HLFL 235 (266)
Q Consensus 162 ~~~~~~~~~~~~~~~~~G~~ll~~sl~~dg~~~~~qe~~~~~~~~~~~e~m~~~n~~~~~~~----~~~~-~~~g-~~~~ 235 (266)
.. - .. --..-.|+++-. .+.--+.+-..||..++...+......-....+.++. .+++ ...+ ++..
T Consensus 90 gG-~--~~---l~gPTgGYLiGF--~~aA~v~G~l~~~~~~~~~~~~~~~~~~~~l~G~~~iy~~G~~wl~~~~~~~~~~ 161 (198)
T 4dve_A 90 GG-A--AS---FLGPSGGYRIAW--LFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVIFVDFVGAIWLSFQSNIPLLT 161 (198)
T ss_dssp CC-S--GG---GGSTTHHHHHHH--HHHHHHHHHHHHHTTGGGSSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHH
T ss_pred Cc-h--hH---HhcchhHHHHHH--HHHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHH
Confidence 10 0 00 001123544332 2233455666776654444444433333333333222 1122 1222 3444
Q ss_pred HHHHHHhChHHHHHHHHHHHhhhhhh
Q 024538 236 AIDFVYHHLDCFFDVALLSTVSDLCF 261 (266)
Q Consensus 236 ~~~f~~~~p~~~~~~~~~s~~~a~Gq 261 (266)
++ ...-|-+..|++.-.++..++.
T Consensus 162 a~--~~~~pFipgDliK~~la~~i~~ 185 (198)
T 4dve_A 162 SL--ISNLVFIPGDCIKAILTVVIVR 185 (198)
T ss_dssp HH--HHGGGGHHHHHHHHHHHHHHHH
T ss_pred HH--HHhHHHHHHHHHHHHHHHHHHH
Confidence 33 3344777778877666665543
No 6
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=4.91 E-value=5.8e+02 Score=14.71 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=8.2
Q ss_pred hHHHHHHHHHhhHHhhc
Q 024538 143 DYFLALLVTLGCSIFIL 159 (266)
Q Consensus 143 ~~~~v~~it~Gv~lf~~ 159 (266)
+++....+..|++++.+
T Consensus 4 EIf~~A~i~~~LvLvGl 20 (35)
T 1vf5_F 4 EMLYAALLSFGLIFVGW 20 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555443
No 7
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=4.89 E-value=6.2e+02 Score=14.98 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=8.7
Q ss_pred hHHHHHHHHHhhHHhhc
Q 024538 143 DYFLALLVTLGCSIFIL 159 (266)
Q Consensus 143 ~~~~v~~it~Gv~lf~~ 159 (266)
+++....+..|++++.+
T Consensus 5 EIf~~A~i~~~L~LvGl 21 (39)
T 1q90_M 5 FIAGTALTMVGMTLVGL 21 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555444
No 8
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=4.75 E-value=4.7e+02 Score=15.44 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=11.4
Q ss_pred HhhCcHHHHHHHHHhCh
Q 024538 228 ILEGHLFLAIDFVYHHL 244 (266)
Q Consensus 228 ~~~g~~~~~~~f~~~~p 244 (266)
-.+|+.-.|++|+..||
T Consensus 31 ~~~~n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 31 LNTSTMEQATEYLLTHP 47 (47)
T ss_dssp HHSCSHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHcCC
Confidence 33467777777777775
No 9
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=4.36 E-value=1.5e+02 Score=15.65 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=3.8
Q ss_pred hHHhhhc
Q 024538 104 QYEALKY 110 (266)
Q Consensus 104 ~n~aL~y 110 (266)
+|.|++|
T Consensus 15 gnaalry 21 (26)
T 2ao6_B 15 GNAALRY 21 (26)
T ss_pred chHHHHH
Confidence 4555555
No 10
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=3.79 E-value=2.7e+02 Score=18.39 Aligned_cols=16 Identities=13% Similarity=0.393 Sum_probs=12.8
Q ss_pred hCcHHHHHHHHHhChH
Q 024538 230 EGHLFLAIDFVYHHLD 245 (266)
Q Consensus 230 ~g~~~~~~~f~~~~p~ 245 (266)
.|++-++.+|+..||+
T Consensus 44 ~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 44 GENIEQILDYLFAHSG 59 (63)
T ss_dssp CSCHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhCCC
Confidence 4578889999988875
Done!