Query 024538
Match_columns 266
No_of_seqs 156 out of 764
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 10:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024538.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024538hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 15.2 2.3E+02 0.017 21.7 7.4 59 88-150 3-61 (248)
2 d2p7tc1 f.14.1.1 (C:86-119) Po 13.8 64 0.0047 16.8 2.3 17 142-158 3-19 (34)
3 d2nmla1 d.330.1.1 (A:2-101) En 13.0 73 0.0053 21.4 3.0 21 185-205 24-44 (100)
4 d1vf5c3 f.23.23.1 (C:250-286) 8.7 1.2E+02 0.009 16.4 2.4 22 243-264 2-23 (37)
5 d1q90a3 f.23.23.1 (A:248-292) 6.1 2E+02 0.015 16.1 2.6 22 243-264 1-22 (45)
6 d1jb0i_ f.23.17.1 (I:) Subunit 4.3 3.1E+02 0.023 14.6 2.7 15 121-135 18-32 (38)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 2.4 4.4E+02 0.032 13.8 1.8 12 18-29 21-32 (37)
8 d1rh5b_ f.23.28.1 (B:) Preprot 2.1 7E+02 0.051 14.3 4.4 24 136-160 15-38 (56)
9 d1whca_ a.5.2.1 (A:) UBA/UBX 3 2.1 4E+02 0.029 15.6 1.5 14 232-245 37-50 (64)
10 d2gena2 a.121.1.1 (A:76-193) P 2.0 5.6E+02 0.04 15.7 2.4 15 237-251 15-29 (118)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=15.20 E-value=2.3e+02 Score=21.73 Aligned_cols=59 Identities=7% Similarity=0.066 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhcCChhHHHHHhhcchHHHHHHHHHHhccccChhhHHHHHHH
Q 024538 88 YKYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLV 150 (266)
Q Consensus 88 ~~y~~~s~~~~~a~~~~n~aL~yvs~p~~~l~KS~k~ipvmi~~~l~~~kry~~~~~~~v~~i 150 (266)
.||+++++++....++.-.++..=++..-.+ ..+.+.++.+++..||.-..||+.=.++
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~PG~~ 61 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVYPGMA 61 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhhhHHH
Confidence 4678888888888887777777666666543 3566777788888888888888765444
No 2
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=13.77 E-value=64 Score=16.76 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHhhHHhh
Q 024538 142 YDYFLALLVTLGCSIFI 158 (266)
Q Consensus 142 ~~~~~v~~it~Gv~lf~ 158 (266)
-+.+++++|+.|+.-|.
T Consensus 3 grcvavvvmvagits~g 19 (34)
T d2p7tc1 3 GRCVAVVVMVAGITSFG 19 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEeccchhh
Confidence 34567777777776554
No 3
>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.97 E-value=73 Score=21.45 Aligned_cols=21 Identities=10% Similarity=0.136 Sum_probs=18.2
Q ss_pred HHHHHhHhHHHHHHHHHccCC
Q 024538 185 GYLGFDGFTSTFQDKLFKGYD 205 (266)
Q Consensus 185 ~sl~~dg~~~~~qe~~~~~~~ 205 (266)
+..++||+...++|++.+++.
T Consensus 24 v~~cmegiC~iYEe~Lk~~~p 44 (100)
T d2nmla1 24 VNECMEGVCKMYEEHLKRMNP 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999988753
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.67 E-value=1.2e+02 Score=16.37 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHhhhhhhhhh
Q 024538 243 HLDCFFDVALLSTVSDLCFIII 264 (266)
Q Consensus 243 ~p~~~~~~~~~s~~~a~Gq~~i 264 (266)
+|.=+..+++|..+-.++|++.
T Consensus 2 ~p~Rv~gl~~F~~~v~laQi~l 23 (37)
T d1vf5c3 2 DPNRVKWMIAFICLVMLAQLML 23 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788888888888764
No 5
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.08 E-value=2e+02 Score=16.10 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHHHhhhhhhhhh
Q 024538 243 HLDCFFDVALLSTVSDLCFIII 264 (266)
Q Consensus 243 ~p~~~~~~~~~s~~~a~Gq~~i 264 (266)
||.=+..+++|..+-.++|++.
T Consensus 1 nP~Rv~gll~F~~~v~laQi~L 22 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVLL 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777788764
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=4.32 E-value=3.1e+02 Score=14.57 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=10.2
Q ss_pred hcchHHHHHHHHHHh
Q 024538 121 CAKMIPVMIWGTLIM 135 (266)
Q Consensus 121 S~k~ipvmi~~~l~~ 135 (266)
-|-+.|+.++|.++.
T Consensus 18 v~wl~p~vvMglLFi 32 (38)
T d1jb0i_ 18 VCWLMPTVVMGLLFL 32 (38)
T ss_dssp HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhe
Confidence 366778777777653
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.43 E-value=4.4e+02 Score=13.77 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q 024538 18 KMIFAVSGIMTT 29 (266)
Q Consensus 18 ~l~~~~~Gi~~~ 29 (266)
.+++++.|+.++
T Consensus 21 lLlifvl~vLFs 32 (37)
T d2axtl1 21 LLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 366777777654
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.11 E-value=7e+02 Score=14.33 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=16.1
Q ss_pred ccccChhhHHHHHHHHHhhHHhhcc
Q 024538 136 QKRYKGYDYFLALLVTLGCSIFILF 160 (266)
Q Consensus 136 ~kry~~~~~~~v~~it~Gv~lf~~~ 160 (266)
-||+++.|+.-++.++ |+-++..+
T Consensus 15 ~~KP~~~Ef~~ia~v~-~iG~~i~G 38 (56)
T d1rh5b_ 15 LKKPTKDEYLAVAKVT-ALGISLLG 38 (56)
T ss_dssp EECCCHHHHHHHHHHH-HHHHHHHH
T ss_pred hcCCCHHHHHHHHHHH-HHHHHHHH
Confidence 4788999988877665 55444443
No 9
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.10 E-value=4e+02 Score=15.60 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.1
Q ss_pred cHHHHHHHHHhChH
Q 024538 232 HLFLAIDFVYHHLD 245 (266)
Q Consensus 232 ~~~~~~~f~~~~p~ 245 (266)
++-.|++|+..|++
T Consensus 37 ~~e~A~~Wl~~h~~ 50 (64)
T d1whca_ 37 GIEAAMDWLMEHED 50 (64)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCC
Confidence 47778888877654
No 10
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.02 E-value=5.6e+02 Score=15.66 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHhChHHHHHHH
Q 024538 237 IDFVYHHLDCFFDVA 251 (266)
Q Consensus 237 ~~f~~~~p~~~~~~~ 251 (266)
++|+..||+....++
T Consensus 15 ~~~v~~~p~~~r~l~ 29 (118)
T d2gena2 15 IDWVVANPDWARFIL 29 (118)
T ss_dssp HHHHHHCHHHHHHHH
T ss_pred HHHHHhChHHHHHHH
Done!