Query 024539
Match_columns 266
No_of_seqs 115 out of 439
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 9.8E-93 2.1E-97 607.2 15.5 236 5-240 3-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 9E-90 1.9E-94 616.7 25.8 236 7-242 1-238 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 1.6E-85 3.4E-90 588.2 23.6 235 7-241 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 2.5E-80 5.5E-85 544.6 20.4 238 6-243 1-239 (247)
5 PF13424 TPR_12: Tetratricopep 96.1 0.012 2.7E-07 42.5 4.8 54 149-204 22-75 (78)
6 KOG1840 Kinesin light chain [C 94.6 5.1 0.00011 40.2 19.1 185 9-208 201-400 (508)
7 TIGR00990 3a0801s09 mitochondr 92.1 3.3 7.2E-05 41.7 13.6 53 148-202 483-535 (615)
8 KOG1840 Kinesin light chain [C 92.0 15 0.00032 37.0 19.7 184 9-215 285-490 (508)
9 PF12862 Apc5: Anaphase-promot 88.7 2.6 5.6E-05 32.1 7.3 71 132-208 3-74 (94)
10 PF12569 NARP1: NMDA receptor- 82.2 59 0.0013 32.8 17.2 62 142-204 156-223 (517)
11 PF13414 TPR_11: TPR repeat; P 82.0 6.7 0.00015 27.1 6.2 46 149-203 20-66 (69)
12 PF07719 TPR_2: Tetratricopept 80.9 4.4 9.4E-05 23.9 4.3 30 10-39 4-33 (34)
13 PF04781 DUF627: Protein of un 80.7 4.4 9.6E-05 32.5 5.4 59 103-162 15-74 (111)
14 PF13174 TPR_6: Tetratricopept 79.4 4 8.7E-05 23.8 3.8 31 9-39 2-32 (33)
15 PF13374 TPR_10: Tetratricopep 78.6 2.1 4.6E-05 26.4 2.4 23 149-171 19-41 (42)
16 PF13181 TPR_8: Tetratricopept 73.9 6.1 0.00013 23.4 3.5 29 10-38 4-32 (34)
17 TIGR00990 3a0801s09 mitochondr 73.8 1E+02 0.0023 31.0 17.5 73 149-230 525-597 (615)
18 PF00515 TPR_1: Tetratricopept 73.2 8.6 0.00019 22.9 4.1 30 10-39 4-33 (34)
19 PF13428 TPR_14: Tetratricopep 72.3 9 0.0002 24.6 4.3 30 10-39 4-33 (44)
20 TIGR02917 PEP_TPR_lipo putativ 67.7 1.4E+02 0.003 30.0 16.3 61 8-70 23-83 (899)
21 TIGR02917 PEP_TPR_lipo putativ 67.1 1.4E+02 0.0031 29.9 16.7 30 10-39 468-497 (899)
22 COG0233 Frr Ribosome recycling 66.5 28 0.00061 30.5 7.2 74 37-111 104-177 (187)
23 PF13431 TPR_17: Tetratricopep 64.8 8.2 0.00018 23.8 2.7 34 154-196 1-34 (34)
24 PF01765 RRF: Ribosome recycli 63.7 36 0.00079 28.7 7.4 73 38-111 85-157 (165)
25 PRK10049 pgaA outer membrane p 62.9 2E+02 0.0043 30.1 14.6 56 10-68 86-141 (765)
26 PF13414 TPR_11: TPR repeat; P 62.8 46 0.00099 22.7 7.4 45 9-54 5-49 (69)
27 PF13424 TPR_12: Tetratricopep 62.0 15 0.00033 26.0 4.1 38 170-209 1-38 (78)
28 PF13432 TPR_16: Tetratricopep 60.5 50 0.0011 22.3 6.8 54 12-67 2-55 (65)
29 TIGR02521 type_IV_pilW type IV 58.6 98 0.0021 25.1 16.9 57 9-67 33-89 (234)
30 TIGR00496 frr ribosome recycli 58.1 43 0.00093 28.9 6.9 73 38-111 94-166 (176)
31 smart00028 TPR Tetratricopepti 57.7 25 0.00055 18.5 3.9 29 10-38 4-32 (34)
32 cd00520 RRF Ribosome recycling 55.4 44 0.00095 28.8 6.5 73 38-111 99-171 (179)
33 PRK00083 frr ribosome recyclin 54.9 52 0.0011 28.6 6.9 73 38-111 103-175 (185)
34 KOG4759 Ribosome recycling fac 54.7 68 0.0015 29.6 7.8 71 38-111 183-253 (263)
35 CHL00033 ycf3 photosystem I as 53.1 1.2E+02 0.0026 24.8 8.7 68 149-225 89-162 (168)
36 PF13371 TPR_9: Tetratricopept 52.5 60 0.0013 22.3 5.9 45 149-202 12-56 (73)
37 PF13176 TPR_7: Tetratricopept 52.2 28 0.00061 21.3 3.6 26 10-35 2-27 (36)
38 PRK15179 Vi polysaccharide bio 51.6 3.1E+02 0.0067 28.8 14.4 33 8-40 87-119 (694)
39 PF13432 TPR_16: Tetratricopep 51.6 38 0.00082 22.9 4.6 34 6-39 30-63 (65)
40 PRK15363 pathogenicity island 51.5 50 0.0011 28.1 6.1 72 145-229 82-155 (157)
41 PF05010 TACC: Transforming ac 49.1 54 0.0012 29.1 6.2 84 12-108 123-206 (207)
42 KOG4162 Predicted calmodulin-b 48.3 1.1E+02 0.0025 32.3 9.1 96 94-204 411-507 (799)
43 CHL00033 ycf3 photosystem I as 45.6 78 0.0017 25.9 6.4 69 119-203 32-100 (168)
44 PF14559 TPR_19: Tetratricopep 44.6 87 0.0019 21.1 5.6 52 19-72 3-54 (68)
45 PRK11447 cellulose synthase su 41.6 5.2E+02 0.011 28.5 16.7 63 9-72 114-176 (1157)
46 COG3947 Response regulator con 41.2 45 0.00098 31.6 4.6 45 187-236 291-335 (361)
47 PF12895 Apc3: Anaphase-promot 40.2 46 0.001 23.9 3.8 43 155-200 41-83 (84)
48 PRK14720 transcript cleavage f 39.2 61 0.0013 35.0 5.8 77 117-206 98-180 (906)
49 PF10083 DUF2321: Uncharacteri 39.1 1.9E+02 0.0042 24.6 7.7 34 25-58 83-116 (158)
50 PRK12794 flaF flagellar biosyn 39.0 42 0.0009 27.3 3.6 54 184-237 8-61 (122)
51 PF08631 SPO22: Meiosis protei 38.1 89 0.0019 28.3 6.1 89 148-237 9-100 (278)
52 PF14559 TPR_19: Tetratricopep 38.0 40 0.00087 22.9 3.0 34 6-39 24-57 (68)
53 PF13429 TPR_15: Tetratricopep 37.5 94 0.002 27.6 6.1 162 12-205 49-210 (280)
54 PRK10049 pgaA outer membrane p 37.5 5E+02 0.011 27.1 17.7 31 10-40 52-82 (765)
55 PRK02603 photosystem I assembl 37.1 1.4E+02 0.0029 24.6 6.6 50 149-204 52-101 (172)
56 PRK11788 tetratricopeptide rep 36.5 3.4E+02 0.0073 24.8 16.6 23 13-35 113-135 (389)
57 PF06552 TOM20_plant: Plant sp 36.2 1.2E+02 0.0025 26.7 6.1 84 129-222 32-121 (186)
58 cd02656 MIT MIT: domain contai 35.8 1.6E+02 0.0035 21.0 6.4 27 9-35 8-34 (75)
59 TIGR02795 tol_pal_ybgF tol-pal 35.4 1.8E+02 0.0038 21.3 7.6 43 10-52 5-49 (119)
60 PF12688 TPR_5: Tetratrico pep 35.4 1.8E+02 0.0039 23.3 6.8 50 149-204 18-67 (120)
61 PLN03088 SGT1, suppressor of 35.3 3.9E+02 0.0084 25.2 10.5 58 9-68 38-95 (356)
62 COG4499 Predicted membrane pro 34.9 85 0.0019 30.7 5.5 47 174-220 231-282 (434)
63 PF13371 TPR_9: Tetratricopept 34.5 72 0.0016 21.9 3.9 29 10-38 32-60 (73)
64 PRK09782 bacteriophage N4 rece 34.2 6.6E+02 0.014 27.5 16.2 25 11-35 513-537 (987)
65 TIGR03302 OM_YfiO outer membra 34.0 3E+02 0.0064 23.4 17.0 63 8-71 34-98 (235)
66 PF03635 Vps35: Vacuolar prote 33.6 3.8E+02 0.0082 28.5 10.5 40 148-187 701-741 (762)
67 PRK12793 flaF flagellar biosyn 32.2 54 0.0012 26.4 3.2 52 184-236 6-58 (115)
68 PRK11447 cellulose synthase su 31.7 7.3E+02 0.016 27.3 15.6 55 12-68 356-410 (1157)
69 KOG1156 N-terminal acetyltrans 29.9 2.6E+02 0.0056 29.2 8.2 165 40-236 3-198 (700)
70 PLN03088 SGT1, suppressor of 29.2 1.6E+02 0.0035 27.8 6.5 45 153-201 50-96 (356)
71 TIGR02795 tol_pal_ybgF tol-pal 29.1 2E+02 0.0044 20.9 5.9 44 10-53 42-87 (119)
72 cd05804 StaR_like StaR_like; a 29.0 4.3E+02 0.0094 23.8 12.2 35 5-39 41-75 (355)
73 PF08424 NRDE-2: NRDE-2, neces 28.9 3.3E+02 0.0071 25.3 8.4 89 148-243 118-216 (321)
74 PF05008 V-SNARE: Vesicle tran 28.7 2.2E+02 0.0048 20.4 7.0 67 25-92 3-70 (79)
75 PRK10370 formate-dependent nit 27.6 1.4E+02 0.003 25.7 5.3 59 8-68 108-169 (198)
76 KOG2002 TPR-containing nuclear 27.3 3.5E+02 0.0076 29.6 8.9 67 5-71 714-780 (1018)
77 PRK15331 chaperone protein Sic 26.7 2.8E+02 0.0061 23.8 6.8 70 148-232 87-156 (165)
78 PF12895 Apc3: Anaphase-promot 26.0 1.3E+02 0.0027 21.6 4.1 18 13-30 31-48 (84)
79 PF08899 DUF1844: Domain of un 25.1 1.3E+02 0.0028 22.5 3.9 28 24-53 41-68 (74)
80 PF10516 SHNi-TPR: SHNi-TPR; 25.0 56 0.0012 21.0 1.7 37 130-169 2-38 (38)
81 PRK11189 lipoprotein NlpI; Pro 24.4 1.6E+02 0.0035 26.7 5.4 32 8-39 237-268 (296)
82 COG2250 Uncharacterized conser 23.5 4E+02 0.0087 21.6 9.7 103 8-111 14-129 (132)
83 KOG0570 Transcriptional coacti 23.4 4.3E+02 0.0093 23.6 7.4 52 44-110 110-166 (223)
84 COG3629 DnrI DNA-binding trans 23.1 6.1E+02 0.013 23.5 8.9 60 10-69 156-216 (280)
85 cd05804 StaR_like StaR_like; a 23.1 5.6E+02 0.012 23.1 15.7 60 9-68 8-68 (355)
86 COG3063 PilF Tfp pilus assembl 22.6 1.1E+02 0.0024 28.0 3.7 47 148-203 85-131 (250)
87 PRK11820 hypothetical protein; 22.4 2E+02 0.0043 26.8 5.5 60 152-211 85-144 (288)
88 TIGR02552 LcrH_SycD type III s 22.4 3.5E+02 0.0076 20.5 8.9 58 8-67 18-75 (135)
89 COG4840 Uncharacterized protei 22.2 3.3E+02 0.0071 20.0 5.8 31 21-52 36-66 (71)
90 COG2956 Predicted N-acetylgluc 22.2 1.4E+02 0.003 28.8 4.5 48 11-58 218-265 (389)
91 KOG0547 Translocase of outer m 21.9 1E+02 0.0022 31.3 3.6 40 149-203 132-177 (606)
92 cd02683 MIT_1 MIT: domain cont 21.9 2.4E+02 0.0053 20.7 4.9 28 8-35 7-34 (77)
93 smart00745 MIT Microtubule Int 21.8 3E+02 0.0066 19.5 6.5 27 9-35 10-36 (77)
94 KOG2002 TPR-containing nuclear 21.8 1.1E+03 0.024 26.0 12.1 51 153-207 250-302 (1018)
95 PRK15174 Vi polysaccharide exp 21.1 9.1E+02 0.02 24.8 16.4 32 9-40 112-143 (656)
96 PRK14574 hmsH outer membrane p 20.6 1.1E+03 0.023 25.4 18.1 45 188-232 340-398 (822)
97 cd05493 Bromo_ALL-1 Bromodomai 20.6 1.3E+02 0.0028 24.9 3.4 39 94-132 75-120 (131)
98 KOG0687 26S proteasome regulat 20.5 4.2E+02 0.0091 25.7 7.2 78 128-208 53-137 (393)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-93 Score=607.16 Aligned_cols=236 Identities=73% Similarity=1.135 Sum_probs=231.7
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHH
Q 024539 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (266)
Q Consensus 5 ~~re~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 84 (266)
+.||+.+|+|+|++||+||++|++-||.++..+.+||.+|||||||||||+||.||+|||++++++||+++++++.++..
T Consensus 3 ~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~l 82 (268)
T COG5040 3 TSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVEL 82 (268)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhccccChhHHHHHHHHHHHHHHHHHHHhc
Q 024539 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (266)
Q Consensus 85 l~~yk~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~ 164 (266)
|++||++|++||..||++|+.+|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|..
T Consensus 83 I~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~t 162 (268)
T COG5040 83 IKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATT 162 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCC
Q 024539 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPE 240 (266)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~~W~~e~~~ 240 (266)
.||||||||||||||||||||||+|++++||.|||+|||+||++||+|+|++|+|+|+||||||||||+||++.+.
T Consensus 163 eLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~ 238 (268)
T COG5040 163 ELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEY 238 (268)
T ss_pred cCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997553
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=9e-90 Score=616.65 Aligned_cols=236 Identities=75% Similarity=1.132 Sum_probs=228.6
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHH
Q 024539 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (266)
Q Consensus 7 re~l~~~Aklaeq~eRy~Dmi~~mk~~i~~-~-~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 84 (266)
|++++|+|||++|||||+||+.+||++++. + .+||.||||||||||||+||++|+|||+|++++++++.++++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999877778778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhccccChhHHHHHHHHHHHHHHHHHHHhc
Q 024539 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (266)
Q Consensus 85 l~~yk~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~ 164 (266)
+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCC
Q 024539 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDG 242 (266)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~~W~~e~~~~~ 242 (266)
+||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+|+|||||||||++|+++.++++
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~ 238 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDG 238 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999866554
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=1.6e-85 Score=588.25 Aligned_cols=235 Identities=71% Similarity=1.108 Sum_probs=223.5
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHH
Q 024539 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIK 86 (266)
Q Consensus 7 re~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~ 86 (266)
|++++|+|||++|||||+||+++||++++.+++||.|||||||+||||+|+++|+|||+|++++++++.+|++.+++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhccccChhHHHHHHHHHHHHHHHHHHHhccC
Q 024539 87 EYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (266)
Q Consensus 87 ~yk~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L 166 (266)
+||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+++|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCC
Q 024539 167 PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED 241 (266)
Q Consensus 167 ~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~~W~~e~~~~ 241 (266)
||+||+||||+||||||||||+|++++||+||++||++|++++|+++|++|+|+++|||||||||++|+++.+++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-80 Score=544.60 Aligned_cols=238 Identities=79% Similarity=1.169 Sum_probs=232.3
Q ss_pred hHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHH
Q 024539 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI 85 (266)
Q Consensus 6 ~re~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l 85 (266)
+|++++++|++++||+||+||+.+||.+++.+.+||.+||||||++|||+|+++|++||+|++++|++++++++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ChhHHHHHHhhcccccchhccccChhHHHHHHHHHHHHHHHHHHHhc
Q 024539 86 KEYRQKVESELSDICNDIMTVIDEHLIPSASA-GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (266)
Q Consensus 86 ~~yk~ki~~EL~~~C~eii~lId~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~ 164 (266)
..||++|+.||..+|++++.++|.+|+|.++. .|++|||+|||||||||++||..|++|++++++++++|+.|+++++.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888 78899999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccCCCCCCc
Q 024539 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGE 243 (266)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~~W~~e~~~~~~ 243 (266)
.|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++.+++..
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~~ 239 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEK 239 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999777653
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.05 E-value=0.012 Score=42.53 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024539 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~ 204 (266)
+.|...|++|+++. ..+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 22 ~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 22 DEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 67999999999994 57899888888888888888887 69999999999998764
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.58 E-value=5.1 Score=40.22 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhc----C--CCCC-HHHHHHHHHHHhhhhhhhHHHHHHHHH-Hhhhhhhhcc--
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKL----D--VELT-VEERNLLSVGYKNVIGARRASWRILSS-IEQKEEAKGN-- 78 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~----~--~~Ls-~eERnLLsvAyKn~i~~~R~s~R~l~~-ieqk~~~~~~-- 78 (266)
.+.++|.+..+.|||+.++...|+.++. . ..+- ..-.+-|++.|-+ .+..+.|..++.. +...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-LGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4557888888999999999999998865 1 1122 2233445555544 3445566666542 3333333333
Q ss_pred hhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhccccChhHHHHHHHHHH
Q 024539 79 EVNAKRIKE-----YRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMK 153 (266)
Q Consensus 79 ~~~~~~l~~-----yk~ki~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~ 153 (266)
+.....+.+ |+.-=-.|-...|+.+++|..+.+ .+..++...-+ .++..-..-..=.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~l-----------~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQL-----------SELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHHH-----------HHHHHHHHHhcchhHHHH
Confidence 322222221 222333677899999999999833 33334332222 222111111222578999
Q ss_pred HHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024539 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISE 208 (266)
Q Consensus 154 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ 208 (266)
.|+.|+.+....+++-||.-=|+--|+++.|+- +|..++|.++.++|+...-+-
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhc
Confidence 999999999888999999999999999998886 799999999999998776543
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.10 E-value=3.3 Score=41.73 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024539 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (266)
Q Consensus 148 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~af 202 (266)
.+.|...|++|+.+.. ..++.++..+. .++.+..+|+-.|+.++|+.+.++|+
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3567788888876653 23333332222 34555556666677777777766654
No 8
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.96 E-value=15 Score=36.95 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHH-H--------HhhhhhhhHHHHHHHHHHhhhhhh
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLD----VELTVEERNLLSV-G--------YKNVIGARRASWRILSSIEQKEEA 75 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~----~~Ls~eERnLLsv-A--------yKn~i~~~R~s~R~l~~ieqk~~~ 75 (266)
-+.-+|.+....|+|+++-.+++.+++.- ....++=-..|+. + |...+.-.+.+.+++. ...+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-
Confidence 35567888888899999999999888542 2233332222222 1 3344444455555543 1111
Q ss_pred hcchhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhccccChhHHH
Q 024539 76 KGNEVNAKRIKEYRQKV---------ESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKE 146 (266)
Q Consensus 76 ~~~~~~~~~l~~yk~ki---------~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~ 146 (266)
..++ .+..++..+ -+|=..+-..+|.+.-...= ..+..--.+++.|-.+|+|-.
T Consensus 361 ~~~~----~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--~~~~~~~~~l~~la~~~~~~k----------- 423 (508)
T KOG1840|consen 361 EDNV----NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--KKDYGVGKPLNQLAEAYEELK----------- 423 (508)
T ss_pred ccch----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--CcChhhhHHHHHHHHHHHHhc-----------
Confidence 1110 111111111 13445566666666654442 223455677888887775432
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCcc
Q 024539 147 AAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEE 215 (266)
Q Consensus 147 ~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee 215 (266)
-...|.+.|.+|..+. ....|.||--++..+|.+. .|+-+|+.++|++++..+..-=...+++.+.+
T Consensus 424 ~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~-~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAA-LYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 1356889999999999 6899999999999999998 56678999999999998876655555555443
No 9
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.73 E-value=2.6 Score=32.07 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=50.8
Q ss_pred ccchhccccChhHHHHHHHHHHHHHHHHHHHhccCCCCCcchHHHh-hhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024539 132 YRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQAFDEAISE 208 (266)
Q Consensus 132 yRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLa-LN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ 208 (266)
.||+--+..++ -..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 34444444443 246788888888888777766654455544 788887776 699999999999998888764
No 10
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=82.20 E-value=59 Score=32.75 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCC------CCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024539 142 DEKKEAAANSMKAYETATTAAEADLPP------THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (266)
Q Consensus 142 ~~~~~~~e~A~~aY~~A~~~a~~~L~p------t~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~ 204 (266)
..|..+++.-...|...++... .+++ ..|.-+--++.|-.-+|+.+|+.++|++...+|++-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3555667766666766654432 3332 357777778888888999999999999988877543
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.00 E-value=6.7 Score=27.06 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhC-ChHHHHHHHHHHHH
Q 024539 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMN-SPERACHLAKQAFD 203 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~-~~~~Ai~iAk~afd 203 (266)
+.|...|++|+++ +|-.-.+..|.++-++. +| ++++|+...++|+.
T Consensus 20 ~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 5789999999876 34444577888888776 57 79999998888764
No 12
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.93 E-value=4.4 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
+..++.+..+.|+|+++++++++++..+|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999987664
No 13
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.70 E-value=4.4 Score=32.55 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCCCCChhHHHHHHhhcccccchhccccC-hhHHHHHHHHHHHHHHHHHHH
Q 024539 103 IMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFG-DEKKEAAANSMKAYETATTAA 162 (266)
Q Consensus 103 ii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~-~~~~~~~e~A~~aY~~A~~~a 162 (266)
.+++|...+...- ..++-.|-+...|+.|..+|....+ +-+....-.|.+||.+|..++
T Consensus 15 AL~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 15 ALEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 3445554443322 2233347888999999999998654 567778899999999997554
No 14
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.37 E-value=4 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
-+..+|.+..+.|++++++..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999987664
No 15
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.56 E-value=2.1 Score=26.39 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCc
Q 024539 149 ANSMKAYETATTAAEADLPPTHP 171 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~P 171 (266)
+.|...|++|+.+.+..++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 57999999999999888899998
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.94 E-value=6.1 Score=23.45 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~ 38 (266)
+..++++..+.|+++.++.++++.++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56789999999999999999999998755
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=73.83 E-value=1e+02 Score=30.99 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHH
Q 024539 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLR 228 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLr 228 (266)
+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|.+-+-+.-+-+.--++.+++.+-..++
T Consensus 525 ~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666653 4555553 22334444444 79999999988888766554322222335666666755555
Q ss_pred hh
Q 024539 229 DN 230 (266)
Q Consensus 229 DN 230 (266)
.+
T Consensus 596 ~~ 597 (615)
T TIGR00990 596 ED 597 (615)
T ss_pred HH
Confidence 44
No 18
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.23 E-value=8.6 Score=22.86 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
+..++.+..+.++|++++.+.+++++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788889999999999999999988775
No 19
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.34 E-value=9 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
...+|+...+.|++++++..+++++...|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999988775
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=67.70 E-value=1.4e+02 Score=29.96 Aligned_cols=61 Identities=26% Similarity=0.270 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 024539 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIE 70 (266)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ie 70 (266)
..++..|+....-|+|++++..+++.+...|+ +++=+..+..+|-. .+....|...+....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 35678899999999999999999999987777 66778888888766 477777777776543
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=67.13 E-value=1.4e+02 Score=29.88 Aligned_cols=30 Identities=3% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
...++.+..+.|+|++++.++.+++..+|.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 455666777777777777777776665544
No 22
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=66.46 E-value=28 Score=30.47 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024539 37 DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (266)
Q Consensus 37 ~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~ki~~EL~~~C~eii~lId~~L 111 (266)
-|+||.|-|.=|..-.|...-..|.|.|.+..=.. ...+....-...-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~-d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAN-DKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999998853111 111111111113355667778888888888888888765
No 23
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=64.84 E-value=8.2 Score=23.84 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=23.5
Q ss_pred HHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHH
Q 024539 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACH 196 (266)
Q Consensus 154 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~ 196 (266)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 36677643 35554 456788888886 599999863
No 24
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=63.67 E-value=36 Score=28.71 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024539 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (266)
Q Consensus 38 ~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~ki~~EL~~~C~eii~lId~~L 111 (266)
|.+|.|-|.-+....|......|.++|.+..--.+.- +........-.+-..+++++|..+.+..+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999865222211 100000012345556677777777777777776544
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=62.91 E-value=2e+02 Score=30.07 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ 68 (266)
...+|.+.-..|++++++..+++++...|+-.. ...+..++.. .+....+...+..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~-~g~~~~Al~~l~~ 141 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKR-AGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345555556666666666666666665554443 5555555543 2444555555543
No 26
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=62.84 E-value=46 Score=22.67 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKN 54 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn 54 (266)
.+..++.++.+.|+|++++.++++.++.+|.- ..=..-++.+|..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 45678899999999999999999999987763 3333444444433
No 27
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=61.99 E-value=15 Score=25.96 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.6
Q ss_pred CcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 024539 170 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 209 (266)
Q Consensus 170 ~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~l 209 (266)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888889999999886 69999999999999888 5443
No 28
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=60.45 E-value=50 Score=22.30 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 024539 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (266)
Q Consensus 12 ~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~ 67 (266)
-+|...-+.|+|++++..+++++..+|. +.+=+..+..++- ..+....|...+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 4678888999999999999999987755 5555556665554 3344444444443
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=58.62 E-value=98 Score=25.08 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~ 67 (266)
-...++...-..|+|+.++..+++++...|.- ..-...++..|-.. +....+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~-~~~~~A~~~~~ 89 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQL-GELEKAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 35567888888899999999999998776543 33444455544332 33444444443
No 30
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=58.13 E-value=43 Score=28.88 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024539 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (266)
Q Consensus 38 ~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~ki~~EL~~~C~eii~lId~~L 111 (266)
|+||.|-|.=|....|...-..|.++|.+..--.+. .+........-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999888888888885311111 0000000011244555666777777777777666654
No 31
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=57.68 E-value=25 Score=18.52 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~ 38 (266)
+..++.+..+.++|++++..+.+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 35678888889999999999998887654
No 32
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=55.40 E-value=44 Score=28.79 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024539 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (266)
Q Consensus 38 ~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~ki~~EL~~~C~eii~lId~~L 111 (266)
|++|.|-|.=|....|...-..|.++|.+..--.+.- +........-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998888888888753111110 000000001234445566666776666666666544
No 33
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=54.87 E-value=52 Score=28.60 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024539 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (266)
Q Consensus 38 ~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~ki~~EL~~~C~eii~lId~~L 111 (266)
|+||.|-|.=|....|...-..|.++|.+..--.+.- +........-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888889888854211110 000000011234445666677777777766666544
No 34
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=54.67 E-value=68 Score=29.55 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024539 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (266)
Q Consensus 38 ~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~ki~~EL~~~C~eii~lId~~L 111 (266)
|+.|.|-|.=|+...+.....+|.|+|-+..=.-+...+... ..=.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999886422222211111 02244556778888888888888888765
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=53.08 E-value=1.2e+02 Score=24.79 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHH
Q 024539 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYY------EIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTL 222 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~y------Ei~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~ 222 (266)
+.|...|++|+.+ .|.+ .+...|.++.++ .-+|+.+.|....++|+.---..+ .++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~-~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI-ALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH-HhCcccHHHHHH
Confidence 5688889888855 2333 233445555555 246888888877776653322222 244555566555
Q ss_pred HHH
Q 024539 223 IMQ 225 (266)
Q Consensus 223 Ilq 225 (266)
-|.
T Consensus 160 ~~~ 162 (168)
T CHL00033 160 WLK 162 (168)
T ss_pred HHH
Confidence 443
No 36
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=52.52 E-value=60 Score=22.29 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024539 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 202 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~af 202 (266)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|+....+++
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3455555555433 45556667778888886 699999988776665
No 37
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=52.18 E-value=28 Score=21.33 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAK 35 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~ 35 (266)
+..+|++..+.|+|+.++.+.++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 38
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=51.65 E-value=3.1e+02 Score=28.76 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 024539 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (266)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~L 40 (266)
+-+..+|.+..+.|||+|+...+..+++..|+.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~ 119 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS 119 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 445678999999999999999999999888876
No 39
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=51.56 E-value=38 Score=22.93 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=27.6
Q ss_pred hHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 6 ~re~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
..+-...++.+..+.|+|++++.++.+++...|.
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455678999999999999999999999877653
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=51.48 E-value=50 Score=28.10 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCcc--chHhHHH
Q 024539 145 KEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEE--SYKDSTL 222 (266)
Q Consensus 145 ~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee--~y~ds~~ 222 (266)
..--+.|..+|..|..+. |.||- ...|.++-+.- +|+.+.|. ++|+.||.--...++. -..-+..
T Consensus 82 ~g~~~~AI~aY~~A~~L~-----~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQIK-----IDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhcC-----CCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 334578888888887554 44542 14455555553 68887765 5788888765443332 1333555
Q ss_pred HHHHHHh
Q 024539 223 IMQLLRD 229 (266)
Q Consensus 223 IlqLLrD 229 (266)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 6666554
No 41
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=49.06 E-value=54 Score=29.13 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHH
Q 024539 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQK 91 (266)
Q Consensus 12 ~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~k 91 (266)
|+++|..+-.||+-+- .=++..-+...+|..-+-..++.-+...+..+|--.. +-.+ .-..| .-+.+
T Consensus 123 y~~~l~~~eqry~aLK----~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~-------~~~S-Le~~L-eQK~k 189 (207)
T PF05010_consen 123 YEERLKKEEQRYQALK----AHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEM-------KVQS-LEESL-EQKTK 189 (207)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHH-HHHHH-HHHHH
Confidence 5667777667775443 3333233345566666666666666666666665421 0000 00011 11222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024539 92 VESELSDICNDIMTVID 108 (266)
Q Consensus 92 i~~EL~~~C~eii~lId 108 (266)
=..||..||+++|.=++
T Consensus 190 En~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 190 ENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33799999999987543
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=48.33 E-value=1.1e+02 Score=32.28 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhccc-cChhHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 024539 94 SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFK-FGDEKKEAAANSMKAYETATTAAEADLPPTHPI 172 (266)
Q Consensus 94 ~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~Pi 172 (266)
+|..++...++++... .. ..-+---+++-|=.|-..|--. ..++|.....++.++|++|.+ +.|+||
T Consensus 411 eegldYA~kai~~~~~----~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp- 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGG----QR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP- 478 (799)
T ss_pred hhHHHHHHHHHHHhhh----hh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc-
Confidence 5566666666653311 01 1111223456676676666554 356788889999999999973 568899
Q ss_pred hHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024539 173 RLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (266)
Q Consensus 173 rLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~ 204 (266)
-...+.|++|-+ .++.+.|...++.++.-
T Consensus 479 --~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 479 --LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred --hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 334555665554 58888888888777554
No 43
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=45.64 E-value=78 Score=25.91 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=43.5
Q ss_pred hhHHHHHHhhcccccchhccccChhHHHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHH
Q 024539 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLA 198 (266)
Q Consensus 119 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iA 198 (266)
..+..++-..|-.+.-... .+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+...
T Consensus 32 ~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~ 95 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYY 95 (168)
T ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3445555556665543322 357888899998763 2233333355666665554 79999999998
Q ss_pred HHHHH
Q 024539 199 KQAFD 203 (266)
Q Consensus 199 k~afd 203 (266)
++|+.
T Consensus 96 ~~Al~ 100 (168)
T CHL00033 96 FQALE 100 (168)
T ss_pred HHHHH
Confidence 88774
No 44
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=44.56 E-value=87 Score=21.09 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=37.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhh
Q 024539 19 QAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK 72 (266)
Q Consensus 19 q~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk 72 (266)
+.|+|++++..+++++..+|. +.+=+-.+..+|-.. +..-.|.+++..+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 568899999999999988777 666666677766554 6667777777665544
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=41.61 E-value=5.2e+02 Score=28.47 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhh
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK 72 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk 72 (266)
..+.+|++.-..|+|++++..++++++.+|+-..--...+.... ...+..-.+.+.+..+.+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~-~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA-KLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh-hCCccHHHHHHHHHHHHHh
Confidence 35788999999999999999999999766553211111111111 1234455566666654443
No 46
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.16 E-value=45 Score=31.64 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=38.8
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024539 187 IMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (266)
Q Consensus 187 i~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~~W~~ 236 (266)
-.|.+.+|+++.+.++. +|.|+|+.++.-+.++-.++||+..=.+
T Consensus 291 e~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 291 EAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 35999999999998653 7889999999999999999999986544
No 47
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=40.20 E-value=46 Score=23.95 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=19.8
Q ss_pred HHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHH
Q 024539 155 YETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 200 (266)
Q Consensus 155 Y~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~ 200 (266)
|++|+++.+. .+.+|..+....-++--+++ +|+.++|+..-++
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHhc
Confidence 4555555543 33344334444434333333 5777777665443
No 48
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=39.16 E-value=61 Score=34.99 Aligned_cols=77 Identities=19% Similarity=0.047 Sum_probs=48.3
Q ss_pred CChhHHHHHHhhcccccc------hhccccChhHHHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCC
Q 024539 117 AGESTVFFYKMKGDYYRY------LAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNS 190 (266)
Q Consensus 117 ~~eskvfy~KmkgDyyRY------laE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~ 190 (266)
......||++..|||+.- +|++-. +-.-.++|..+|++++++ .|.||. +||+=-|+|.-. +
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-d 164 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-D 164 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-h
Confidence 334555666666666532 233321 111246788899888754 377764 555555555555 9
Q ss_pred hHHHHHHHHHHHHHHH
Q 024539 191 PERACHLAKQAFDEAI 206 (266)
Q Consensus 191 ~~~Ai~iAk~afd~Ai 206 (266)
.++|.+++++|+.--+
T Consensus 165 L~KA~~m~~KAV~~~i 180 (906)
T PRK14720 165 KEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999977654
No 49
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.11 E-value=1.9e+02 Score=24.63 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 024539 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 58 (266)
Q Consensus 25 Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~ 58 (266)
..++..+++++...+||++|++.|..+...++-.
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 4567778888888999999999999999887653
No 50
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=39.03 E-value=42 Score=27.31 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhccC
Q 024539 184 YYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSD 237 (266)
Q Consensus 184 ~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~~W~~e 237 (266)
|-++......+.++=.++|..+...|....+..-.+....++-|..|-.+|+.-
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~ 61 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIF 61 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 334555555556666677778777776655442233356789999999999963
No 51
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=38.09 E-value=89 Score=28.32 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHH-HhhhHHHHHHHHhCChHHHHHHHHHHHHHHH--HhhcccCccchHhHHHHH
Q 024539 148 AANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI--SELDTLNEESYKDSTLIM 224 (266)
Q Consensus 148 ~e~A~~aY~~A~~~a~~~L~pt~PirLg-LaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai--~~ld~l~ee~y~ds~~Il 224 (266)
.+.|.-.|.+|-.+.. .++|....+|. +.+|+.+-.+..-.+.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3568888888887775 78888989998 7889999999863499999999999987632 233334433322245678
Q ss_pred HHHHhhHhhhccC
Q 024539 225 QLLRDNLTLWTSD 237 (266)
Q Consensus 225 qLLrDNl~~W~~e 237 (266)
++|-...-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 8888888777643
No 52
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=38.04 E-value=40 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=27.9
Q ss_pred hHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 6 ~re~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
+.+-.+.+|++.-+.|+|+++...+++++..+|+
T Consensus 24 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 24 NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455678999999999999999999999877665
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=37.52 E-value=94 Score=27.60 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHH
Q 024539 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQK 91 (266)
Q Consensus 12 ~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~k 91 (266)
.+|.|+...+++++++.+..+++..++.-...-.+|... + .-+....+.+++...-++. .........+.-|
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~--~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~--- 120 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L--QDGDPEEALKLAEKAYERD--GDPRYLLSALQLY--- 120 (280)
T ss_dssp --------------------------------------------------------------------------H-H---
T ss_pred ccccccccccccccccccccccccccccccccccccccc-c--ccccccccccccccccccc--cccchhhHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHhhcccccchhccccChhHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 024539 92 VESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP 171 (266)
Q Consensus 92 i~~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~P 171 (266)
.-..-..++.++|+... .....+.-..++-+.|.+|.-.-+ .++|..+|++|+.+. |.||
T Consensus 121 ---~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~----------~~~A~~~~~~al~~~-----P~~~ 180 (280)
T PF13429_consen 121 ---YRLGDYDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGD----------PDKALRDYRKALELD-----PDDP 180 (280)
T ss_dssp ---HHTT-HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHH------TT-H
T ss_pred ---HHHhHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-----CCCH
Q ss_pred chHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHH
Q 024539 172 IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 205 (266)
Q Consensus 172 irLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~A 205 (266)
- +++.-++.+--.|+.++|..+.+.....+
T Consensus 181 ~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 181 D----ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp H----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred H----HHHHHHHHHHHCCChHHHHHHHHHHHHHC
No 54
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=37.49 E-value=5e+02 Score=27.12 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~L 40 (266)
+..+|.++-..+++++++.++++++...|.-
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6778888888899999999998888776554
No 55
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=37.09 E-value=1.4e+02 Score=24.65 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024539 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~ 204 (266)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 468889999887642 222223345666666665 79999999988877663
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=36.47 E-value=3.4e+02 Score=24.84 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=11.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Q 024539 13 VAKLAEQAERYDEMVDAMKNVAK 35 (266)
Q Consensus 13 ~Aklaeq~eRy~Dmi~~mk~~i~ 35 (266)
++.+..+.|+|+++..+++++.+
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHc
Confidence 34444444555555555554443
No 57
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=36.23 E-value=1.2e+02 Score=26.69 Aligned_cols=84 Identities=29% Similarity=0.355 Sum_probs=47.9
Q ss_pred cccccchhccccChhHHHHHHHHHHHHHHHHHHHhccCCCCCc---chHHHhhhHHHHHHHHhCChHHHHH---HHHHHH
Q 024539 129 GDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP---IRLGLALNFSVFYYEIMNSPERACH---LAKQAF 202 (266)
Q Consensus 129 gDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt~P---irLgLaLN~SVF~yEi~~~~~~Ai~---iAk~af 202 (266)
|...==++-|..+.+.+++++.|..-|++|+.+- |..+ .-||.|+--=-|+ ..+..+|-. .|...|
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHH
Confidence 3444445667777788888999999999998663 2222 4466665544443 355555544 555668
Q ss_pred HHHHHhhcccCccchHhHHH
Q 024539 203 DEAISELDTLNEESYKDSTL 222 (266)
Q Consensus 203 d~Ai~~ld~l~ee~y~ds~~ 222 (266)
+.|... +-+.+.|+-+..
T Consensus 104 qkAv~~--~P~ne~Y~ksLe 121 (186)
T PF06552_consen 104 QKAVDE--DPNNELYRKSLE 121 (186)
T ss_dssp HHHHHH---TT-HHHHHHHH
T ss_pred HHHHhc--CCCcHHHHHHHH
Confidence 888763 234456766543
No 58
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=35.79 E-value=1.6e+02 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAK 35 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~ 35 (266)
.++-.|--+++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566777888999999998888775
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=35.41 E-value=1.8e+02 Score=21.28 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV--ELTVEERNLLSVGY 52 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~--~Ls~eERnLLsvAy 52 (266)
+.-.+....+.|+|++++..+.+++..+| .+..+-+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34455556666777777777766665443 33344444444443
No 60
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=35.39 E-value=1.8e+02 Score=23.27 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024539 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 204 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~ 204 (266)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5789999999752 344 5555566666665555 589999999999887654
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=35.27 E-value=3.9e+02 Score=25.17 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ 68 (266)
-+..+|.+..+.|+|++++..+.+++..+|.. ..=...+..+|-. .+.+..|.+.+..
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 45677778888888888888888888877653 3334455555543 4666666666654
No 62
>COG4499 Predicted membrane protein [Function unknown]
Probab=34.91 E-value=85 Score=30.68 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=39.3
Q ss_pred HHHhhhHHHHHHHHhCChHHHHHHHHHH-----HHHHHHhhcccCccchHhH
Q 024539 174 LGLALNFSVFYYEIMNSPERACHLAKQA-----FDEAISELDTLNEESYKDS 220 (266)
Q Consensus 174 LgLaLN~SVF~yEi~~~~~~Ai~iAk~a-----fd~Ai~~ld~l~ee~y~ds 220 (266)
|-|++=|.+|+|-+.--.+.||.-|.+| +++.|..++.++.+.-+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 3467889999999999999999999999 5889999998887654443
No 63
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=34.48 E-value=72 Score=21.85 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~ 38 (266)
...+|.+..+.|+|.+++..+.++++..|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566666677777777777777665544
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=34.24 E-value=6.6e+02 Score=27.55 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 024539 11 VYVAKLAEQAERYDEMVDAMKNVAK 35 (266)
Q Consensus 11 ~~~Aklaeq~eRy~Dmi~~mk~~i~ 35 (266)
+.++.+..+.|+|++++...+++..
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3445555556666666666655443
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=33.96 E-value=3e+02 Score=23.41 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 024539 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELT--VEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (266)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls--~eERnLLsvAyKn~i~~~R~s~R~l~~ieq 71 (266)
+.+..++...-+.|+|++++..+.+++..+|.-. .+-+..+..+|-.. +....+...+..+..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 4566777888889999999999999998776533 33445555554432 455566666655433
No 66
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=33.60 E-value=3.8e+02 Score=28.46 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHH-HhhhHHHHHHHH
Q 024539 148 AANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEI 187 (266)
Q Consensus 148 ~e~A~~aY~~A~~~a~~~L~pt~PirLg-LaLN~SVF~yEi 187 (266)
.++..+|-|+|+.+|...+.|.-.+-|= =+||..+|||+-
T Consensus 701 ~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 701 GKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 4688999999999999888743333332 379999999963
No 67
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=32.23 E-value=54 Score=26.41 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=40.7
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024539 184 YYEIMNSPE-RACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (266)
Q Consensus 184 ~yEi~~~~~-~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~~W~~ 236 (266)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|..|-.+|+-
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 556777666 7777778889999888776655544 677888999999999996
No 68
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=31.67 E-value=7.3e+02 Score=27.30 Aligned_cols=55 Identities=11% Similarity=-0.101 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024539 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (266)
Q Consensus 12 ~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ 68 (266)
.++.++-..|+|++++..+++++..+|.-. .=...|..+|.. .+....+.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345666778999999999999998877532 233344555432 3445555555544
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=29.94 E-value=2.6e+02 Score=29.24 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 024539 40 LTVEERNLLSVGYKNV-IGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAG 118 (266)
Q Consensus 40 Ls~eERnLLsvAyKn~-i~~~R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~ki~~EL~~~C~eii~lId~~Lip~~~~~ 118 (266)
|++.|-.||-.+.|.. ..+++++++.+.+|..+-...|.+-...-+.-+.--=. ++....+-.-|-. +.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-------~ea~~~vr~glr~---d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-------EEAYELVRLGLRN---DL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-------HHHHHHHHHHhcc---Cc
Confidence 8899999999999985 56789999999998876544444322211111100001 2333333322221 22
Q ss_pred hhHHHHHHhhcccccchhccccChhHHHHHHHHHHHHHHHHHHHhccC------------------------------CC
Q 024539 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL------------------------------PP 168 (266)
Q Consensus 119 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L------------------------------~p 168 (266)
.| -++|+.-|=+||---+ -..|..||+.|+.+.+.++ |.
T Consensus 73 ~S-~vCwHv~gl~~R~dK~----------Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRSDKK----------YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhhhhh----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 3577777777763222 1457788888865543222 12
Q ss_pred CCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHHHhhHhhhcc
Q 024539 169 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 236 (266)
Q Consensus 169 t~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNl~~W~~ 236 (266)
.|.-++|+|+. ++ ..|+...|..|..+-..... ..+|-+.|.-+..+| ..|..+-..
T Consensus 142 ~ra~w~~~Avs----~~-L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~L---y~n~i~~E~ 198 (700)
T KOG1156|consen 142 QRASWIGFAVA----QH-LLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELLL---YQNQILIEA 198 (700)
T ss_pred hHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHH---HHHHHHHHc
Confidence 22233333332 33 35888899988866444443 345556666555544 445444433
No 70
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=29.24 E-value=1.6e+02 Score=27.75 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhc--cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024539 153 KAYETATTAAEA--DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 201 (266)
Q Consensus 153 ~aY~~A~~~a~~--~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~a 201 (266)
.-|++|+..+.. .+.|.+| ...++.++.++. +|+.+.|+...++|
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~a 96 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKG 96 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 334455544432 2334333 223344444443 46666666644443
No 71
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=29.15 E-value=2e+02 Score=20.92 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHh
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL--TVEERNLLSVGYK 53 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~L--s~eERnLLsvAyK 53 (266)
...++.+..+.|+|+.++.+++.++...|.- ..+=+..+..+|.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 4556666777777777777777766554432 2333444444443
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=29.01 E-value=4.3e+02 Score=23.80 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=27.3
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 5 ~~re~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
+.++-....+-++-..|+++.+..++.++++..|.
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 75 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPR 75 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45667777888888888898888888888876553
No 73
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=28.90 E-value=3.3e+02 Score=25.29 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhcc----------CCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccch
Q 024539 148 AANSMKAYETATTAAEAD----------LPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESY 217 (266)
Q Consensus 148 ~e~A~~aY~~A~~~a~~~----------L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y 217 (266)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 345666777776655432 233456888999999999998 599999999999887776633222222221
Q ss_pred HhHHHHHHHHHhhHhhhccCCCCCCc
Q 024539 218 KDSTLIMQLLRDNLTLWTSDIPEDGE 243 (266)
Q Consensus 218 ~ds~~IlqLLrDNl~~W~~e~~~~~~ 243 (266)
. +.++.=-.=|.++.+--|+
T Consensus 197 ~------~~~~~fe~FWeS~vpRiGE 216 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIGE 216 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCCC
Confidence 1 3444444679997775553
No 74
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=28.74 E-value=2.2e+02 Score=20.40 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh-hhhcchhhHHHHHHHHHHH
Q 024539 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EAKGNEVNAKRIKEYRQKV 92 (266)
Q Consensus 25 Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~-~~~~~~~~~~~l~~yk~ki 92 (266)
....-+...+..-+.++.++|+-...-....+..-..-+..+.. |-+. ...........++.||..+
T Consensus 3 ~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~-E~~~~p~s~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMEL-EVRSLPPSERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555578887777777777776666555532 2221 1111122445566666554
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=27.57 E-value=1.4e+02 Score=25.70 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=37.8
Q ss_pred HhHHHHHHH-HHHhCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024539 8 ENFVYVAKL-AEQAER--YDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (266)
Q Consensus 8 e~l~~~Akl-aeq~eR--y~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ 68 (266)
+-+..+|.+ ..+.|+ ++++...+.+++..+|. +.+=+.+|..++-. .+....|......
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~ 169 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFM-QADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 345566775 467787 58999999999888776 44566666666543 3444444444433
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=27.33 E-value=3.5e+02 Score=29.62 Aligned_cols=67 Identities=22% Similarity=0.142 Sum_probs=54.6
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 024539 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (266)
Q Consensus 5 ~~re~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieq 71 (266)
++++-+.++|+...++|+|.+............|.=+.=.-|+.-+..|-.-+.+|.--|++..+..
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4567888999999999999999999999888777766678888888888888877777676655443
No 77
>PRK15331 chaperone protein SicA; Provisional
Probab=26.67 E-value=2.8e+02 Score=23.80 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHhHHHHHHHH
Q 024539 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLL 227 (266)
Q Consensus 148 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLL 227 (266)
-++|..+|--|.-+... .|.-|.+.|. .|=.+|++.+|.. +|..|+..-. ..+-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~~--dp~p~f~agq-------C~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLKN--DYRPVFFTGQ-------CQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHcccC--CCCccchHHH-------HHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 45666777666655533 3333455543 3445789888776 8888877311 122233366666666
Q ss_pred HhhHh
Q 024539 228 RDNLT 232 (266)
Q Consensus 228 rDNl~ 232 (266)
..|..
T Consensus 152 ~~~~~ 156 (165)
T PRK15331 152 KTAET 156 (165)
T ss_pred Hcccc
Confidence 65543
No 78
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=25.96 E-value=1.3e+02 Score=21.57 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=8.9
Q ss_pred HHHHHHHhCCHHHHHHHH
Q 024539 13 VAKLAEQAERYDEMVDAM 30 (266)
Q Consensus 13 ~Aklaeq~eRy~Dmi~~m 30 (266)
+|...-+.|+|+.++.++
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 345555555555555444
No 79
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=25.06 E-value=1.3e+02 Score=22.46 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 024539 24 DEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (266)
Q Consensus 24 ~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyK 53 (266)
=||...++. .+.+.|+.+|+.+|..+.-
T Consensus 41 ID~L~mL~e--KTkGNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 41 IDLLAMLQE--KTKGNLDEEEERLLESALY 68 (74)
T ss_pred HHHHHHHHH--HHccCCCHHHHHHHHHHHH
Confidence 355555554 4689999999999987643
No 80
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.00 E-value=56 Score=21.00 Aligned_cols=37 Identities=32% Similarity=0.543 Sum_probs=26.2
Q ss_pred ccccchhccccChhHHHHHHHHHHHHHHHHHHHhccCCCC
Q 024539 130 DYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPT 169 (266)
Q Consensus 130 DyyRYlaE~~~~~~~~~~~e~A~~aY~~A~~~a~~~L~pt 169 (266)
|.|--++|+.-..++. +.|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4455566766555543 578888999999988778773
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=24.40 E-value=1.6e+02 Score=26.74 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 024539 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (266)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~ 39 (266)
+-..+++++..+.|+|++++.+.++++..+|.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 34678999999999999999999999988764
No 82
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=23.53 E-value=4e+02 Score=21.57 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhc----------C-CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhh
Q 024539 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKL----------D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAK 76 (266)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dmi~~mk~~i~~----------~-~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ieqk~~~~ 76 (266)
...+-.|+..-..|.|+-++..-.|.++. + ++-|+.=+.||....+. +.....-++.+..++..--..
T Consensus 14 ~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~s 92 (132)
T COG2250 14 ERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILS 92 (132)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHh
Confidence 44566777777889999999887777642 3 77888888888888764 333333333333333322111
Q ss_pred cchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024539 77 GNEV--NAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (266)
Q Consensus 77 ~~~~--~~~~l~~yk~ki~~EL~~~C~eii~lId~~L 111 (266)
.-+. .......|-+...+++......|++++...+
T Consensus 93 rY~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 93 RYPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred cCccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0010 0113466777888889999999999998765
No 83
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=23.40 E-value=4.3e+02 Score=23.60 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhhhh-----HHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024539 44 ERNLLSVGYKNVIGAR-----RASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEH 110 (266)
Q Consensus 44 ERnLLsvAyKn~i~~~-----R~s~R~l~~ieqk~~~~~~~~~~~~l~~yk~ki~~EL~~~C~eii~lId~~ 110 (266)
+...+-+-..++|+.+ |.|+++|....- +++..+.+++...|.++.++|++.
T Consensus 110 di~tifvnlHHLiNeyRPhQaResLi~lmE~Qi---------------~~~~~~ve~~kk~~~~~~e~l~d~ 166 (223)
T KOG0570|consen 110 DIRTIFVNLHHLINEYRPHQARESLIMLMERQI---------------EQRSDIVEDFKKHLRQVREVLDDQ 166 (223)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666778888876 577777754211 133334445555566666666443
No 84
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=23.09 E-value=6.1e+02 Score=23.55 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-hhhhhHHHHHHHHHH
Q 024539 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKN-VIGARRASWRILSSI 69 (266)
Q Consensus 10 l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn-~i~~~R~s~R~l~~i 69 (266)
+..+|....-++|++..+..++++++..|-=.+.=+.|+...+++ -.+.-..+++.++..
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 445777777789999999999999998776666666777777665 555555556666554
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=23.06 E-value=5.6e+02 Score=23.06 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKL-DVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~-~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~~ 68 (266)
-+.++|.+....+++++.......+... ...+|.-|+..+....-...+..-.+...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567888888889999988888777755 34677777766543333333444445554443
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.62 E-value=1.1e+02 Score=28.02 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024539 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 203 (266)
Q Consensus 148 ~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd 203 (266)
.+.|.+.|++|+.++.. + =-+.-||.-|++.. |.+++|...-.+|..
T Consensus 85 ~~~A~e~YrkAlsl~p~-----~---GdVLNNYG~FLC~q-g~~~eA~q~F~~Al~ 131 (250)
T COG3063 85 NDLADESYRKALSLAPN-----N---GDVLNNYGAFLCAQ-GRPEEAMQQFERALA 131 (250)
T ss_pred hhhHHHHHHHHHhcCCC-----c---cchhhhhhHHHHhC-CChHHHHHHHHHHHh
Confidence 36789999999866432 2 22456999999985 699998876555543
No 87
>PRK11820 hypothetical protein; Provisional
Probab=22.43 E-value=2e+02 Score=26.78 Aligned_cols=60 Identities=25% Similarity=0.219 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcc
Q 024539 152 MKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDT 211 (266)
Q Consensus 152 ~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~~ld~ 211 (266)
.++|-+++.-....++...|+.|.-.|.+.--..+--.+.+..-.....|++.|+..+..
T Consensus 85 ~~~y~~~l~~l~~~~~~~~~~~l~~ll~~p~v~~~~~~~~~~~~~~l~~al~~AL~~l~~ 144 (288)
T PRK11820 85 AKQYLEALEELKAELPEAGEISLDDLLRWPGVLEAEEEDLEALWAALLAALDEALDDLIE 144 (288)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHhCCCCcccCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455666654433466544599999888875322222335666667888999999887764
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=22.43 E-value=3.5e+02 Score=20.52 Aligned_cols=58 Identities=17% Similarity=0.077 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 024539 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (266)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~~R~s~R~l~ 67 (266)
+..+.++..+.+.|+|+++...+++++..+|. +.+-+..+..+|-.. +....+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~~ 75 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQML-KEYEEAIDAYA 75 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45667888888899999999999998887765 455555555554332 33344444443
No 89
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.24 E-value=3.3e+02 Score=20.05 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024539 21 ERYDEMVDAMKNVAKLDVELTVEERNLLSVGY 52 (266)
Q Consensus 21 eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAy 52 (266)
.+|+| .+.+.++|.....||+.|-..+....
T Consensus 36 ~~~ed-Ltdiy~mvkkkenfSpsEmqaiA~eL 66 (71)
T COG4840 36 ANYED-LTDIYDMVKKKENFSPSEMQAIADEL 66 (71)
T ss_pred ccHHH-HHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 45555 46677777777888888888777654
No 90
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=22.16 E-value=1.4e+02 Score=28.79 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 024539 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 58 (266)
Q Consensus 11 ~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~Ls~eERnLLsvAyKn~i~~ 58 (266)
|-+.+|.-+-|.|+-+|+....+.+.||++..|--..|..||..+=.+
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 567788888899999999999999999999999999999999876433
No 91
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.90 E-value=1e+02 Score=31.27 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHH------HHHhCChHHHHHHHHHHHH
Q 024539 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFY------YEIMNSPERACHLAKQAFD 203 (266)
Q Consensus 149 e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~------yEi~~~~~~Ai~iAk~afd 203 (266)
+.|.++|.+|++++-.+ +||| |+.+|+.++-++.+.+|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 92
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=21.86 E-value=2.4e+02 Score=20.72 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024539 8 ENFVYVAKLAEQAERYDEMVDAMKNVAK 35 (266)
Q Consensus 8 e~l~~~Aklaeq~eRy~Dmi~~mk~~i~ 35 (266)
-+++-.|--.+++|+|++++.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567778888899999999988877764
No 93
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=21.84 E-value=3e+02 Score=19.53 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAK 35 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~ 35 (266)
+++..|--.++.|+|++++.+.++.++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677788888888888877764
No 94
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=21.77 E-value=1.1e+03 Score=26.00 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhc--cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 024539 153 KAYETATTAAEA--DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIS 207 (266)
Q Consensus 153 ~aY~~A~~~a~~--~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~afd~Ai~ 207 (266)
++|+.|+.+-.. ...|.||.-|...-|+=+| -++.+.++.+|-.|+..+..
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhh
Confidence 445555444422 5788999988888776332 58999999999999888743
No 95
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=21.05 E-value=9.1e+02 Score=24.77 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 024539 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (266)
Q Consensus 9 ~l~~~Aklaeq~eRy~Dmi~~mk~~i~~~~~L 40 (266)
-+..++.+.-+.|++++++..+++++..+|..
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34566677777777777777777777666654
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=20.63 E-value=1.1e+03 Score=25.40 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=32.9
Q ss_pred hCChHHHHHHHHHHHHHHHH------hh-------c-ccCccchHhHHHHHHHHHhhHh
Q 024539 188 MNSPERACHLAKQAFDEAIS------EL-------D-TLNEESYKDSTLIMQLLRDNLT 232 (266)
Q Consensus 188 ~~~~~~Ai~iAk~afd~Ai~------~l-------d-~l~ee~y~ds~~IlqLLrDNl~ 232 (266)
.+.|++|..|-++++...-+ .+ - -++-+.|.++..+++-+.++.-
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 59999999999998875410 11 1 1345789999999999888644
No 97
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=20.59 E-value=1.3e+02 Score=24.90 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCC-------hhHHHHHHhhcccc
Q 024539 94 SELSDICNDIMTVIDEHLIPSASAG-------ESTVFFYKMKGDYY 132 (266)
Q Consensus 94 ~EL~~~C~eii~lId~~Lip~~~~~-------eskvfy~KmkgDyy 132 (266)
+=+..+|+||+.+|...|.-....+ -.|-||+|+-=+-|
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf 120 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVF 120 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhc
Confidence 4567899999999998885433222 36678888754433
No 98
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=20.54 E-value=4.2e+02 Score=25.65 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=50.5
Q ss_pred hcccccchhcccc---ChhH----HHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHH
Q 024539 128 KGDYYRYLAEFKF---GDEK----KEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 200 (266)
Q Consensus 128 kgDyyRYlaE~~~---~~~~----~~~~e~A~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~Ai~iAk~ 200 (266)
-++||-|+||-.. +..+ .+.-+.=.+-..++.+-|++++.- +-+| ...+|-+-||-.| ||++.|.+..+.
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE-~ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGE-SEVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-HHHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 3678888888432 1111 112222234456667777766554 3333 3467777777776 999999999999
Q ss_pred HHHHHHHh
Q 024539 201 AFDEAISE 208 (266)
Q Consensus 201 afd~Ai~~ 208 (266)
+++++++-
T Consensus 130 t~~ktvs~ 137 (393)
T KOG0687|consen 130 TYEKTVSL 137 (393)
T ss_pred HHHHHhhc
Confidence 99999873
Done!