BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024540
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
Linguale
Length = 250
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLI 195
FI F++R YE A G SI L N QE+A +D G G +A+K +
Sbjct: 5 AFIQTDTFTLRGYECDAFGRXSIPALXNLXQESA-----NRNAIDYGIGIAD-LAQKGVG 58
Query: 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRA-TRWGIF 253
W + R + + +YP + D + + T+ + K + RD+ + A G L A + W +F
Sbjct: 59 WXLXRFCLRIHQYPRYGDTIQLXTYPTTVDKYFIHRDFRVL-ATDGTLLADARSTWLVF 116
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 143 FSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQ 202
F + + +G + L NHL A H D GFG + + N WV++R+
Sbjct: 13 FVAEPFHVDFNGRLTXGVLGNHLLNCAGFHAS-----DRGFGIA-TLNEDNYTWVLSRLA 66
Query: 203 VVVDRYPTWNDVVNVETWVS 222
+ +D P + +V+TWV
Sbjct: 67 IELDEXPYQYEKFSVQTWVE 86
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 162 MNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221
+ H +ET LNH + G + + K+ + + + +D T++DV +V W
Sbjct: 51 LQHFKETTLNHAILMGRVTFDGMGRRLLPKRETLILTRNPEEKIDGVATFHDVQSVLDWY 110
Query: 222 SASGKN 227
SA KN
Sbjct: 111 SAQEKN 116
>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
Length = 262
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 128 GIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATP 187
G + + ++ + I YE G A++ TL++ + + + DA T
Sbjct: 1 GXATLGANASLYSEQHRITYYECDRTGRATLTTLID------IAVLASEDQSDALGLTTE 54
Query: 188 AMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRA 247
+ + WVVT+ + + R P ++VV + SA R++ IR+A G+ L
Sbjct: 55 XVQSHGVGWVVTQYAIDITRXPRQDEVVTIAVRGSAYNPYFAYREFWIRDAD-GQQLAYI 113
Query: 248 T 248
T
Sbjct: 114 T 114
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 167 ETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGK 226
ET++ + AG P MA++ L W + V VD ++D ++ + SGK
Sbjct: 200 ETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTM-LYSDALDQRLAMFKSGK 258
Query: 227 NGMR 230
NG R
Sbjct: 259 NGPR 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,900,536
Number of Sequences: 62578
Number of extensions: 252120
Number of successful extensions: 448
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 8
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)