BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024540
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SQI3|FATB_GOSHI Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
Length = 413
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/250 (78%), Positives = 208/250 (83%), Gaps = 9/250 (3%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGSANLGGIKSKSS--SGSLQVKANAQAPSKING 58
MVATA SAFFPV+S S +K K LGS IKSK S SGSLQVKANAQAP KING
Sbjct: 1 MVATAVTSAFFPVTSSPDSSDSKNKKLGS-----IKSKPSVSSGSLQVKANAQAPPKING 55
Query: 59 TSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR 118
T V TTP E KN D SSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR
Sbjct: 56 T-VASTTPVEGSKNDD-GASSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR 113
Query: 119 RSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGL 178
R DM++DPFGIGKIVQDG +F QNFSIRSYEIGAD TASIETLMNHLQETA+NH +AGL
Sbjct: 114 RPDMVIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASIETLMNHLQETAINHCRSAGL 173
Query: 179 LDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNA 238
L GFGATP M KKNLIWVVTRMQVVVDRYPTW DVV V+TWVSASGKNGMRRDWL+ N+
Sbjct: 174 LGEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVSNS 233
Query: 239 KTGETLTRAT 248
+TGE LTRAT
Sbjct: 234 ETGEILTRAT 243
>sp|Q9SJE2|FATB_ARATH Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
Length = 412
Score = 362 bits (930), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 183/248 (73%), Positives = 205/248 (82%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGSANLGGIKSKSSSGSLQVKANAQAPSKINGTS 60
MVAT+A S+FFPV S S D K +GS NL G+ S +SG ++VK NAQAP KING
Sbjct: 1 MVATSATSSFFPVPSSSLDPNGKGNKIGSTNLAGLNSAPNSGRMKVKPNAQAPPKINGKK 60
Query: 61 VGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS 120
VGL + ++ ++S P PRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS
Sbjct: 61 VGLPGSVDIVRTDTETSSHPAPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS 120
Query: 121 DMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLD 180
DMLVDPFGIG+IVQDG +FRQNFSIRSYEIGAD +ASIET+MNHLQETALNHV TAGLL
Sbjct: 121 DMLVDPFGIGRIVQDGLVFRQNFSIRSYEIGADRSASIETVMNHLQETALNHVKTAGLLG 180
Query: 181 AGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKT 240
GFG+TP M KKNLIWVVTRMQVVVD+YPTW DVV V+TWVS SGKNGMRRDWL+R+ T
Sbjct: 181 DGFGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDVVEVDTWVSQSGKNGMRRDWLVRDCNT 240
Query: 241 GETLTRAT 248
GETLTRA+
Sbjct: 241 GETLTRAS 248
>sp|Q39513|FATB_CUPHO Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1
Length = 415
Score = 348 bits (894), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 174/251 (69%), Positives = 204/251 (81%), Gaps = 7/251 (2%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGS--ANLGGIKSKSS-SGSLQVKANAQAPSKIN 57
MVATAA+SAFFP+ PS D+ ++ LG+ ++L +K KS+ +G LQVKANA AP KIN
Sbjct: 1 MVATAASSAFFPL--PSADTSSRPGKLGNKPSSLSPLKPKSTPNGGLQVKANASAPPKIN 58
Query: 58 GTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKP 117
G+ VGL + LK + + S+PPPRTFINQLPDWSMLLAAITT+FLAAEKQWMMLDWKP
Sbjct: 59 GSPVGLKS--GGLKTQEDAHSAPPPRTFINQLPDWSMLLAAITTVFLAAEKQWMMLDWKP 116
Query: 118 RRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAG 177
+R DMLVDPFG+G IVQDG +FRQNFSIRSYEIGAD TASIET+MNHLQETALNHV AG
Sbjct: 117 KRPDMLVDPFGLGSIVQDGLVFRQNFSIRSYEIGADRTASIETVMNHLQETALNHVKIAG 176
Query: 178 LLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRN 237
L + GFG TP M K++LIWVV +MQV+V+RYPTW D V V TWV+ SGKNGMRRDWLI +
Sbjct: 177 LSNDGFGRTPEMYKRDLIWVVAKMQVMVNRYPTWGDTVEVNTWVAKSGKNGMRRDWLISD 236
Query: 238 AKTGETLTRAT 248
TGE LTRA+
Sbjct: 237 CNTGEILTRAS 247
>sp|Q39473|FATB_CINCA Myristoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1
Length = 382
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 137/219 (62%), Gaps = 30/219 (13%)
Query: 34 GIKSKSSSGSLQVKA-NAQAPSK-INGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPD 91
G+K +SS LQ++A NAQ K INGT T ESLK +LPD
Sbjct: 24 GMKPRSSD--LQLRAGNAQTSLKMINGTKFSYT---ESLK----------------KLPD 62
Query: 92 WSMLLAAITTIFLAAEKQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSIRSYE 149
WSML A ITTIF AAEKQW L+WKP+ + +L D FG G +FR+ F+IRSYE
Sbjct: 63 WSMLFAVITTIFSAAEKQWTNLEWKPKPNPPQLLDDHFG-----PHGLVFRRTFAIRSYE 117
Query: 150 IGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYP 209
+G D + SI +MNHLQE ALNH + G+L GFG T M+K++LIWVV R V V+RYP
Sbjct: 118 VGPDRSTSIVAVMNHLQEAALNHAKSVGILGDGFGTTLEMSKRDLIWVVKRTHVAVERYP 177
Query: 210 TWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRAT 248
W D V VE WV ASG NG R D+L+R+ KTGE LTR T
Sbjct: 178 AWGDTVEVECWVGASGNNGRRHDFLVRDCKTGEILTRCT 216
>sp|Q41635|FATB_UMBCA Lauroyl-acyl carrier protein thioesterase, chloroplastic
OS=Umbellularia californica GN=FATB1 PE=1 SV=1
Length = 382
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 138/220 (62%), Gaps = 32/220 (14%)
Query: 34 GIKSKSSSGSLQVKANAQAPSK---INGTSVGLTTPAESLKNGDISTSSPPPRTFINQLP 90
G+K +SS LQ++A AP+ INGT T ESLK +LP
Sbjct: 24 GMKPRSSD--LQLRA-GNAPTSLKMINGTKFSYT---ESLK----------------RLP 61
Query: 91 DWSMLLAAITTIFLAAEKQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSIRSY 148
DWSML A ITTIF AAEKQW L+WKP+ +L D FG+ G +FR+ F+IRSY
Sbjct: 62 DWSMLFAVITTIFSAAEKQWTNLEWKPKPKLPQLLDDHFGL-----HGLVFRRTFAIRSY 116
Query: 149 EIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRY 208
E+G D + SI +MNH+QE LNH + G+L GFG T M+K++L+WVV R V V+RY
Sbjct: 117 EVGPDRSTSILAVMNHMQEATLNHAKSVGILGDGFGTTLEMSKRDLMWVVRRTHVAVERY 176
Query: 209 PTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRAT 248
PTW D V VE W+ ASG NGMRRD+L+R+ KTGE LTR T
Sbjct: 177 PTWGDTVEVECWIGASGNNGMRRDFLVRDCKTGEILTRCT 216
>sp|Q9SV64|FATA2_ARATH Oleoyl-acyl carrier protein thioesterase 2, chloroplastic
OS=Arabidopsis thaliana GN=FATA2 PE=2 SV=1
Length = 367
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 82/124 (66%)
Query: 125 DPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFG 184
D G++++DGF +++ F +RSYE+G + TA+IET+ N LQE A NHV G GF
Sbjct: 69 DRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVACNHVQNVGFSTDGFA 128
Query: 185 ATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETL 244
T M K +LIWV RM + + +YP W+DVV +ETW + G+ G RRDW++++ TGE +
Sbjct: 129 TTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEVI 188
Query: 245 TRAT 248
RAT
Sbjct: 189 GRAT 192
>sp|Q42712|FATA_CORSA Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)
OS=Coriandrum sativum GN=FATA PE=2 SV=1
Length = 369
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 81/130 (62%)
Query: 119 RSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGL 178
RS L + +G + +DG +++ F +R YE+G + TA++ET+ N LQE NH + G
Sbjct: 62 RSSSLAEKLRLGSLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGGNHAQSVGF 121
Query: 179 LDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNA 238
GF TP M K +LIWV RM + + RYP W+DVV +ETW + G+ G RRDW+I++
Sbjct: 122 STDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDF 181
Query: 239 KTGETLTRAT 248
T E + RAT
Sbjct: 182 ATDEVIGRAT 191
>sp|Q42561|FATA1_ARATH Oleoyl-acyl carrier protein thioesterase 1, chloroplastic
OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
Length = 362
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%)
Query: 123 LVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAG 182
L D +G + +DG +++ F +RSYE+G++ TA++ET+ N LQE NH + G G
Sbjct: 68 LADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEVGCNHAQSVGFSTDG 127
Query: 183 FGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGE 242
F T M K +LIWV RM + + +YP W DVV +ETW + G+ G RRDW+++++ TGE
Sbjct: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIGTRRDWILKDSVTGE 187
Query: 243 TLTRAT 248
RAT
Sbjct: 188 VTGRAT 193
>sp|Q6FKA5|MED14_CANGA Mediator of RNA polymerase II transcription subunit 14 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RGR1 PE=3 SV=1
Length = 1037
Score = 37.0 bits (84), Expect = 0.14, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 41 SGSLQVKANAQAPSKINGTSVGLTTPAESLK--NGDISTSSPP--PRTFINQLPDWSMLL 96
+G +++ QAP ++GL +P +++ N + ST+SPP P INQ+P SM++
Sbjct: 18 NGKNEMEVVEQAPIPKTNANIGLKSPVNTVEDVNQEDSTNSPPPIPHVEINQMP-LSMII 76
Query: 97 AAITTIFLAAEKQWM 111
+T + Q+M
Sbjct: 77 RNLTVYTVKEISQYM 91
>sp|Q9HGN1|GCN2_SCHPO Serine/threonine-protein kinase gcn2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=gcn2 PE=2 SV=2
Length = 1576
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 115 WKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIR-SYEIGADGTASIETLMNHLQETALNHV 173
W PRR D+LV G I++ + ++ +++ +I G +S+E ++ H + +N V
Sbjct: 1326 WAPRRVDVLVTSIGKDSILEKCSLLQELWALNIQADIVLRGASSLEEIVTHYRSEGINWV 1385
Query: 174 M 174
+
Sbjct: 1386 L 1386
>sp|Q03573|YLF3_CAEEL Uncharacterized protein C40H1.3 OS=Caenorhabditis elegans
GN=C40H1.3 PE=4 SV=1
Length = 504
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 141 QNFSIRSYEIGADGTASIETLMNHLQETALNH 172
Q + RS ++GAD AS+ TL N+L+ +L H
Sbjct: 62 QGYDERSSDVGADPLASVRTLRNNLRVMSLEH 93
>sp|Q54801|DYR_STRPN Dihydrofolate reductase OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=dhfR PE=1 SV=2
Length = 168
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 162 MNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221
+ H +ET LNH + G + + K+ + + + +D T+ DV +V W
Sbjct: 31 LQHFKETTLNHAILMGRVTFDGMGRRLLPKRETLILTRNPEEKIDGVATFQDVQSVLDWY 90
Query: 222 SASGKN 227
A KN
Sbjct: 91 QAQEKN 96
>sp|Q95218|DMBT1_RABIT Deleted in malignant brain tumors 1 protein OS=Oryctolagus cuniculus
GN=Dmbt1 PE=1 SV=2
Length = 1594
Score = 30.8 bits (68), Expect = 9.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 131 KIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGA 185
+ V DG I R+ F Y + ++ + ++ LMNH+Q + V A L GF A
Sbjct: 1282 RFVSDGSITRRGFQAEFYSLPSNDSTNLLCLMNHMQAS----VSRAYLQSLGFSA 1332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,516,408
Number of Sequences: 539616
Number of extensions: 3702671
Number of successful extensions: 10461
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10408
Number of HSP's gapped (non-prelim): 58
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)