BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024541
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 116/220 (52%), Gaps = 9/220 (4%)
Query: 7 NITLVNVCQETIWPGIIT--QGGNYHGDGFTLKPGQSASYNPPDGWSGRIWARTGCNFXX 64
IT N C T+WPG +T Q GF L S S + P WSGR W RT C+
Sbjct: 2 KITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDA 61
Query: 65 XXXXXXXXXX--XXXINCTSPGSLP-VTIAEFTLGAN--VDYYDVSLVDGFNVPVLVRPF 119
+ C G++P T+ E T+ AN DYYDVSLVDGFN+P+ V P
Sbjct: 62 AGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQ 121
Query: 120 NGKGNCSNAGCDGDLRQNCPSDLAVKD-NGKVIGCRSACDAFNSDEYCCKGAFGDLTSCL 178
G G C + C ++ + CP+ L VK +G VI C+SAC AF +YCC +C
Sbjct: 122 GGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCP 181
Query: 179 ASNYSKSFKQVCPAASSYAFDDRTSIITCS-ATDYIVGFC 217
+ YS+ F++ CP A SYA+DD+ S TCS DY++ FC
Sbjct: 182 PTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 221
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 112/219 (51%), Gaps = 9/219 (4%)
Query: 8 ITLVNVCQETIWPGIIT--QGGNYHGDGFTLKPGQSASYNPPDGWSGRIWARTGCNFXXX 65
I+ N C +WPG +T Q GF L S + P W+GR WARTGC+
Sbjct: 3 ISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDAS 62
Query: 66 XXXXXXXX--XXXXINCTSPGSLP-VTIAEFTL--GANVDYYDVSLVDGFNVPVLVRPFN 120
+ C G++P T+AEF + G D+YDVSLVDGFN+P+ V P
Sbjct: 63 GKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQG 122
Query: 121 GKGNCSNAGCDGDLRQNCPSDLAVK-DNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLA 179
G G+C A C ++ CPS+L K +G V+ C SAC F + +YCC +C
Sbjct: 123 GTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPP 182
Query: 180 SNYSKSFKQVCPAASSYAFDDRTSIITCS-ATDYIVGFC 217
+NYS+ F CP A SYA+DD+ TC+ +Y + FC
Sbjct: 183 TNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 221
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 109/215 (50%), Gaps = 17/215 (7%)
Query: 8 ITLVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYNPPDGWSG-RIWARTGCNFXXXX 66
T+VN C T+W + GG G L G+S P G + RIWARTGC F
Sbjct: 3 FTVVNQCPFTVWAASVPVGG-----GRQLNRGESWRITAPAGTTAARIWARTGCKFDASG 57
Query: 67 XXXXXXXX-XXXINCTSPGSLPVTIAEFTLGA--NVDYYDVSLVDGFNVPVLVRPFNGKG 123
+ CT G P T+AE+ L N+D++D+SL+DGFNVP+ P G G
Sbjct: 58 RGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSG 117
Query: 124 NCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYS 183
C D+ CP++L + +G C +AC F DEYCC G+ + C +NYS
Sbjct: 118 CSRGPRCAVDVNARCPAEL--RQDGV---CNNACPVFKKDEYCCVGSAAN--DCHPTNYS 170
Query: 184 KSFKQVCPAASSYAFDDRTSIITCSA-TDYIVGFC 217
+ FK CP A SY DD TS TC A T+Y V FC
Sbjct: 171 RYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 205
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 108/213 (50%), Gaps = 23/213 (10%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYNPPDGWSG-RIWARTGCNFXXXXXX 68
+VN C T+W + GG L GQS + N G +G RIW RTGC+F
Sbjct: 5 IVNRCSYTVWAAAVPGGGR------QLNQGQSWTINVNAGTTGGRIWGRTGCSFDGSGRG 58
Query: 69 XXXXXX-XXXINCTSPGSLPVTIAEFTLGA--NVDYYDVSLVDGFNVPVLVRPFNGKGNC 125
++CT+ G+ P T+AEF L N+D++D+SLVDGFNVP+ P +G C
Sbjct: 59 RCQTGDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSG--GC 116
Query: 126 SNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKS 185
C D+ CP L GC + C F +D+YCC +C ++YS+
Sbjct: 117 RGIRCAADINGQCPGALKAPG-----GCNNPCTVFKTDQYCCNSG-----ACSPTDYSQF 166
Query: 186 FKQVCPAASSYAFDDRTSIITC-SATDYIVGFC 217
FK+ CP A SY DD+T+ TC T+Y V FC
Sbjct: 167 FKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFC 199
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 102/216 (47%), Gaps = 31/216 (14%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDG----FTLKPGQSASYNPPDGWSGRIWARTGCNFXXX 65
++N C T+W GG G T+ PG + + RIW RT C F
Sbjct: 5 ILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTT---------NARIWGRTSCTFDAN 55
Query: 66 XXXXXXXXX-XXXINCTSPGSLPVTIAEFTLGA--NVDYYDVSLVDGFNVPVLVRPFNGK 122
+ C GS P T+AEF L N+DY D+SLVDGFN+P+ F+G
Sbjct: 56 GRGKCETGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPM---DFSG- 111
Query: 123 GNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNY 182
C C D+ CPS+L GC + C F ++EYCC G SC + Y
Sbjct: 112 --CRGIQCSVDINGQCPSELKAPG-----GCNNPCTVFKTNEYCCTDGPG---SCGPTTY 161
Query: 183 SKSFKQVCPAASSYAFDDRTSIITC-SATDYIVGFC 217
SK FK CP A SY DD+TS+ TC S T+Y V FC
Sbjct: 162 SKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFC 197
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 99/217 (45%), Gaps = 22/217 (10%)
Query: 8 ITLVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYNPPDGWS-GRIWARTGCNFXXXX 66
I + N C T+W GG G L GQ+ N P G RIW RTGCNF
Sbjct: 3 IEVRNNCPYTVWAASTPIGG-----GRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAG 57
Query: 67 XXXXXXXX-XXXINCTSPGSLPVTIAEFTLG--ANVDYYDVSLVDGFNVPVLVRPFN-GK 122
+ CT G P T+AE+ L +N+D++D+SLVDGFN+P+ P
Sbjct: 58 RGTCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSG 117
Query: 123 GNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNY 182
G C C ++ CP L V GC + C F +YCC C +
Sbjct: 118 GKCHAIHCTANINGECPRALKVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTEL 167
Query: 183 SKSFKQVCPAASSYAFDDRTSIITC--SATDYIVGFC 217
SK FK+ CP A SY DD TS TC +T+Y V FC
Sbjct: 168 SKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFC 204
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 100/217 (46%), Gaps = 22/217 (10%)
Query: 8 ITLVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYNPPDGWS-GRIWARTGCNFXXXX 66
I + N C T+W GG G L GQ+ N P G R+W RT CNF
Sbjct: 3 IEVRNNCPYTVWAASTPIGG-----GRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAG 57
Query: 67 XXXXXXXX-XXXINCTSPGSLPVTIAEFTLG--ANVDYYDVSLVDGFNVPVLVRPFN-GK 122
+ CT G P T+AE+ L + +D++D+SLVDGFN+P+ P N
Sbjct: 58 RGTCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSG 117
Query: 123 GNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNY 182
G C C ++ CP +L V GC + C F +YCC C + +
Sbjct: 118 GKCHAIHCTANINGECPRELRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTFF 167
Query: 183 SKSFKQVCPAASSYAFDDRTSIITC--SATDYIVGFC 217
SK FKQ CP A SY DD TS TC +T+Y V FC
Sbjct: 168 SKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFC 204
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 99/217 (45%), Gaps = 22/217 (10%)
Query: 8 ITLVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASY-NPPDGWSGRIWARTGCNFXXXX 66
+ N C T+W GG G L+ GQS + PP RIW RT CNF
Sbjct: 4 FEVHNNCPYTVWAAATPVGG-----GRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAG 58
Query: 67 XXXXXXXX-XXXINCTSPGSLPVTIAEFTLG--ANVDYYDVSLVDGFNVPVLVRPFN-GK 122
+ C G P T+AE+ L +N+D++D+S++DGFN+P+ P G
Sbjct: 59 RGWCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGP 118
Query: 123 GNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNY 182
G C C ++ CP L V GC + C F +YCC C +
Sbjct: 119 GKCHGIQCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTEL 168
Query: 183 SKSFKQVCPAASSYAFDDRTSIITCSA--TDYIVGFC 217
S+ FKQ CP A SY DD TS TC++ TDY V FC
Sbjct: 169 SRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFC 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 92/213 (43%), Gaps = 14/213 (6%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYN-PPDGWSGRIWARTGCNFXXXXXX 68
+VN C T+W G L G+S + N P G+IWART C F
Sbjct: 5 IVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGSG 64
Query: 69 XXXXXX-XXXINCTSPGSLPVTIAEFTLGA-NVDYYDVSLVDGFNVPVLVRPFNGKGNCS 126
+ C G P T+AEF+L DY D+S + GFNVP+ P C
Sbjct: 65 ICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTR--GCR 122
Query: 127 NAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF 186
C D+ CP+ L G C AC F + EYCC C + YS+ F
Sbjct: 123 GVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFF 173
Query: 187 KQVCPAASSYAFDDRTSIITCSATDYIVGFCAS 219
K++CP A SY D T++ +++Y V FC +
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT 206
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 92/213 (43%), Gaps = 14/213 (6%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYN-PPDGWSGRIWARTGCNFXXXXXX 68
+VN C T+W G L G+S + N P G+IWART C F
Sbjct: 5 IVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGRG 64
Query: 69 XXXXXX-XXXINCTSPGSLPVTIAEFTLGA-NVDYYDVSLVDGFNVPVLVRPFNGKGNCS 126
+ C G P T+AEF+L DY D+S + GFNVP+ P C
Sbjct: 65 ICRTGDCGGLLQCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTR--GCR 122
Query: 127 NAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF 186
C D+ CP+ L G C AC F + EYCC C + YS+ F
Sbjct: 123 GVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFF 173
Query: 187 KQVCPAASSYAFDDRTSIITCSATDYIVGFCAS 219
K++CP A SY D T++ +++Y V FC +
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT 206
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 92/213 (43%), Gaps = 14/213 (6%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYN-PPDGWSGRIWARTGCNFXXXXXX 68
+VN C T+W G L G+S + N P G+IWART C F
Sbjct: 5 IVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSG 64
Query: 69 XXXXXX-XXXINCTSPGSLPVTIAEFTLGA-NVDYYDVSLVDGFNVPVLVRPFNGKGNCS 126
+ C G P T+AEF+L DY D+S + GFNVP+ P C
Sbjct: 65 ICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTR--GCR 122
Query: 127 NAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF 186
C D+ CP+ L G C AC F + EYCC C + YS+ F
Sbjct: 123 GVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFF 173
Query: 187 KQVCPAASSYAFDDRTSIITCSATDYIVGFCAS 219
K++CP A SY D T++ +++Y V FC +
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT 206
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 92/213 (43%), Gaps = 14/213 (6%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYN-PPDGWSGRIWARTGCNFXXXXXX 68
+VN C T+W G L G+S + N P G+IWART C F
Sbjct: 5 IVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSG 64
Query: 69 XXXXXX-XXXINCTSPGSLPVTIAEFTLGA-NVDYYDVSLVDGFNVPVLVRPFNGKGNCS 126
+ C G P T+AEF+L DY D+S + GFNVP+ P C
Sbjct: 65 ICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTR--GCR 122
Query: 127 NAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF 186
C D+ CP+ L G C AC F + EYCC C + YS+ F
Sbjct: 123 GVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFF 173
Query: 187 KQVCPAASSYAFDDRTSIITCSATDYIVGFCAS 219
K++CP A SY D T++ +++Y V FC +
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT 206
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 92/213 (43%), Gaps = 14/213 (6%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYN-PPDGWSGRIWARTGCNFXXXXXX 68
+VN C T+W G L G+S + N P G+IWART C F
Sbjct: 5 IVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSG 64
Query: 69 XXXXXX-XXXINCTSPGSLPVTIAEFTLGA-NVDYYDVSLVDGFNVPVLVRPFNGKGNCS 126
+ C G P T+AEF+L DY D+S + GFNVP+ P C
Sbjct: 65 ICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTR--GCR 122
Query: 127 NAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF 186
C D+ CP+ L G C AC F + EYCC C + YS+ F
Sbjct: 123 GVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFF 173
Query: 187 KQVCPAASSYAFDDRTSIITCSATDYIVGFCAS 219
K++CP A SY D T++ +++Y V FC +
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT 206
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYN-PPDGWSGRIWARTGCNFXXXXXX 68
+VN C T+W G L G+S + N P G+IWART C F
Sbjct: 5 IVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDSGSG 64
Query: 69 XXXXXX-XXXINCTSPGSLPVTIAEFTLG-ANVDYYDVSLVDGFNVPVLVRPFNGKGNCS 126
+ C G P T+AEF+L DY D+S + GFNVP+ P C
Sbjct: 65 ICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGKDYIDISNIKGFNVPMNFSPTTR--GCR 122
Query: 127 NAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF 186
C D+ CP+ L G C AC F + EYCC C + S+ F
Sbjct: 123 GVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEXSRFF 173
Query: 187 KQVCPAASSYAFDDRTSIITCSATDYIVGFCAS 219
K++CP A SY D T++ +++Y V FC +
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT 206
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 90/213 (42%), Gaps = 14/213 (6%)
Query: 10 LVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYN-PPDGWSGRIWARTGCNFXXXXXX 68
+VN C T+W G L G+S + N P G+IWART C F
Sbjct: 5 IVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDSGSG 64
Query: 69 XXXXXX-XXXINCTSPGSLPVTIAEFTLG-ANVDYYDVSLVDGFNVPVLVRPFNGKGNCS 126
+ C G P T+AEF+L D D+S + GFNVP+ P C
Sbjct: 65 ICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGKDXIDISNIKGFNVPMNFSPTTR--GCR 122
Query: 127 NAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF 186
C D+ CP+ L G C AC F + EYCC C + S+ F
Sbjct: 123 GVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEXSRFF 173
Query: 187 KQVCPAASSYAFDDRTSIITCSATDYIVGFCAS 219
K++CP A SY D T++ +++Y V FC +
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPT 206
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 8 ITLVNVCQETIWPGI---ITQGGNYHGDGFTLKPGQSASYNPPDGWSGRIWARTGCNFXX 64
+T+ N C T+WP + + QGG G L PG S S + P S IW RTGC+F
Sbjct: 3 LTITNRCHFTVWPAVALVLAQGGG----GTELHPGASWSLDTPVIGSQYIWGRTGCSFDR 58
Query: 65 XXXXXXXXX--XXXXINCTSPGSLPVTIAEFT-LGANVDYYDVSLVDGFNVPVLVRPFNG 121
+ C ++P T+AE + L N Y S + GFNVP+ ++ +G
Sbjct: 59 AGKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQGNYTYGVTSTLKGFNVPMNLKCSSG 118
Query: 122 KG-NCSNAGCD 131
C AGCD
Sbjct: 119 DALPCRKAGCD 129
>pdb|2WSW|A Chain A, Crystal Structure Of Carnitine Transporter From Proteus
Mirabilis
Length = 509
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 25/71 (35%)
Query: 177 CLASNYSKSFKQVCPAASSYAFDDRTSIITCSATDYIVGFCASRNQTVCSYHDNKLFCNE 236
C+A K K + +F + +IV + T+ Y LF +
Sbjct: 251 CVAFGLQKGVKIASDVRTYLSFLMLGWVFIVGGASFIVNYFTDSVGTLLMYMPRMLFYTD 310
Query: 237 SKGSKAFPQSW 247
G FPQ+W
Sbjct: 311 PIGKGGFPQAW 321
>pdb|4EJS|C Chain C, Structure Of Yeast Elongator Subcomplex Elp456
Length = 277
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 149 KVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF--KQVCPAASSYAFDDRTSIIT 206
KV+ S D FN DEY +L + S++ KS + P + +A D S+
Sbjct: 183 KVLIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFAKDVTGSLHV 242
Query: 207 CSATDYIVGFCASRNQTVCSYHDNKLFCNESKGSKAF 243
C I A+ N ++ + L+ NE + +K F
Sbjct: 243 CRGGAPI----ATSNTSLHVVENEYLYLNEKESTKLF 275
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 200 DRTSIITCSATDYIVGFCASRNQTVCSYHDNK 231
DRT+I C YI + ++N+ VC H +K
Sbjct: 1057 DRTTIYVCDQCGYIGWYDKNKNKYVCPIHGDK 1088
>pdb|4A8J|C Chain C, Crystal Structure Of The Elongator Subcomplex Elp456
pdb|4A8J|F Chain F, Crystal Structure Of The Elongator Subcomplex Elp456
Length = 280
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 149 KVIGCRSACDAFNSDEYCCKGAFGDLTSCLASNYSKSF--KQVCPAASSYAFDDRTSIIT 206
KV+ S D FN DEY +L + S++ KS + P + +A D S+
Sbjct: 186 KVLIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSXINLNLNPLKTGFAKDVTGSLHV 245
Query: 207 CSATDYIVGFCASRNQTVCSYHDNKLFCNESKGSKAF 243
C I A+ N ++ + L+ NE + +K F
Sbjct: 246 CRGGAPI----ATSNTSLHVVENEYLYLNEKESTKLF 278
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 200 DRTSIITCSATDYIVGFCASRNQTVCSYHDNK 231
DRT I C YI + ++N+ VC H +K
Sbjct: 1054 DRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDK 1085
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 27.3 bits (59), Expect = 9.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 164 EYCCKGAFGDLTSCLASNYSKSFKQVC 190
E CK +L S ASNY K F+Q C
Sbjct: 258 EQACKEDLEELVSMKASNYYKIFEQDC 284
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 27.3 bits (59), Expect = 9.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 164 EYCCKGAFGDLTSCLASNYSKSFKQVC 190
E CK +L S ASNY K F+Q C
Sbjct: 39 EQACKEDLEELVSMKASNYYKIFEQDC 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,243,473
Number of Sequences: 62578
Number of extensions: 340912
Number of successful extensions: 586
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 27
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)