Query 024541
Match_columns 266
No_of_seqs 145 out of 673
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 5.1E-83 1.1E-87 570.6 17.7 211 7-217 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 8.5E-82 1.8E-86 562.6 17.3 211 8-218 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 1.6E-81 3.5E-86 563.3 16.5 208 8-218 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.5E-77 3.2E-82 533.9 6.8 206 12-218 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 1.8E-58 3.9E-63 394.4 14.3 151 8-217 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 9.5E-52 2.1E-56 351.2 13.9 147 8-218 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 6.3E-49 1.4E-53 334.5 13.3 146 8-216 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.0 0.011 2.4E-07 51.1 10.8 45 86-132 72-121 (155)
9 cd09216 GH64-LPHase-like glyco 93.6 0.16 3.6E-06 49.2 6.2 107 7-120 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 92.3 0.38 8.3E-06 46.9 6.8 81 35-120 58-146 (369)
11 cd09214 GH64-like glycosyl hyd 76.5 2 4.4E-05 41.1 2.7 32 89-120 124-155 (319)
12 cd09214 GH64-like glycosyl hyd 55.7 5.4 0.00012 38.3 1.0 22 180-201 276-299 (319)
13 cd09220 GH64-GluB-like glycosi 52.6 6.6 0.00014 38.5 1.0 23 179-201 320-344 (369)
14 cd09216 GH64-LPHase-like glyco 46.7 9.2 0.0002 37.3 1.0 22 180-201 310-333 (353)
15 PF06282 DUF1036: Protein of u 40.1 45 0.00098 27.1 4.0 40 5-44 3-44 (115)
16 PHA03094 dUTPase; Provisional 39.6 30 0.00065 29.2 3.0 29 33-61 35-69 (144)
17 PF11142 DUF2917: Protein of u 36.0 36 0.00078 24.9 2.5 23 34-56 2-29 (63)
18 cd00407 Urease_beta Urease bet 33.3 97 0.0021 25.2 4.8 54 4-57 20-93 (101)
19 PF00947 Pico_P2A: Picornaviru 32.3 21 0.00046 30.1 0.9 20 64-83 82-101 (127)
20 TIGR00192 urease_beta urease, 30.2 1.2E+02 0.0026 24.6 4.8 54 4-57 20-93 (101)
21 PF05991 NYN_YacP: YacP-like N 27.6 20 0.00044 30.8 -0.0 10 106-115 2-11 (166)
22 PRK13203 ureB urease subunit b 27.3 1.4E+02 0.003 24.4 4.7 54 4-57 20-93 (102)
23 PRK13202 ureB urease subunit b 27.0 1.5E+02 0.0032 24.3 4.8 53 5-57 22-94 (104)
24 PF07732 Cu-oxidase_3: Multico 26.6 44 0.00096 26.9 1.8 51 5-55 35-94 (117)
25 cd07557 trimeric_dUTPase Trime 26.5 79 0.0017 23.7 3.1 28 33-60 13-46 (92)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=5.1e-83 Score=570.64 Aligned_cols=211 Identities=51% Similarity=1.117 Sum_probs=197.6
Q ss_pred EEEEEeCCCCceeceeecCC--CccCCCceEecCCCceeecCCCCCeeEEeeecccccC-CCCCCcccCCCCCceecCC-
Q 024541 7 NITLVNVCQETIWPGIITQG--GNYHGDGFTLKPGQSASYNPPDGWSGRIWARTGCNFN-NSTSSCKTGSCGSSINCTS- 82 (266)
Q Consensus 7 t~ti~N~C~~tVWpg~~~~~--~~~~~~G~~L~pG~s~s~~vp~~WsGriWaRTgCs~d-~g~~~C~TGdCgg~l~C~~- 82 (266)
+|||+|||+||||||++... ..+.++||+|+||++++|++|++|+|||||||||+|| .|+++|+||||++.|+|.+
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g~ 80 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCGGGLECNGA 80 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCCCeeecCCC
Confidence 59999999999999975432 2456799999999999999999999999999999999 7999999999999999986
Q ss_pred CCCCCceeEEEEec--CCccccccccccccccceeeecCCCCCCCCCCCCccccccCCCCccccc-cCCeeeeccccccc
Q 024541 83 PGSLPVTIAEFTLG--ANVDYYDVSLVDGFNVPVLVRPFNGKGNCSNAGCDGDLRQNCPSDLAVK-DNGKVIGCRSACDA 159 (266)
Q Consensus 83 ~g~pPaTlaEftl~--~~~d~YDVSlVdGfNlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~-~~G~vv~C~SaC~~ 159 (266)
.|.||+|||||+|+ +++|||||||||||||||+|.|+++.+.|+.++|.+|||..||.||+|+ .+|+||||+|||++
T Consensus 81 ~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~~ 160 (219)
T cd09218 81 GGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACLA 160 (219)
T ss_pred CCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHHh
Confidence 56899999999998 4689999999999999999999876678999999999999999999998 45889999999999
Q ss_pred cCCCcccccCCCCCCCCCCCCchhhHHhccCCCccccccCCCCCeeeecC-CCeEEEec
Q 024541 160 FNSDEYCCKGAFGDLTSCLASNYSKSFKQVCPAASSYAFDDRTSIITCSA-TDYIVGFC 217 (266)
Q Consensus 160 ~~~d~yCC~G~~~~p~~C~pt~ys~~FK~~CP~AYsya~DD~ts~ftC~~-~~Y~VtFC 217 (266)
|++|||||+|+|++|++|+|+.||++||++||+||+|||||++|+|+|.+ ++|+||||
T Consensus 161 f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 161 FNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999985 69999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=8.5e-82 Score=562.59 Aligned_cols=211 Identities=46% Similarity=1.010 Sum_probs=198.6
Q ss_pred EEEEeCCCCceeceeecCC-CccCCCceEecCCCceeecCCCCCe-eEEeeecccccC-CCCCCcccCCCCCceecCC-C
Q 024541 8 ITLVNVCQETIWPGIITQG-GNYHGDGFTLKPGQSASYNPPDGWS-GRIWARTGCNFN-NSTSSCKTGSCGSSINCTS-P 83 (266)
Q Consensus 8 ~ti~N~C~~tVWpg~~~~~-~~~~~~G~~L~pG~s~s~~vp~~Ws-GriWaRTgCs~d-~g~~~C~TGdCgg~l~C~~-~ 83 (266)
|||+|+|+||||||++..+ ..+.++||+|+||++++|++|++|+ |||||||||+|| .|+++|+||||||.|+|.+ +
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~g 80 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGWG 80 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCCC
Confidence 7999999999999976553 2456789999999999999999996 999999999999 7999999999999999997 5
Q ss_pred CCCCceeEEEEec--CCccccccccccccccceeeecCCCCCCCCCCCCccccccCCCCccccccCCeeeeccccccccC
Q 024541 84 GSLPVTIAEFTLG--ANVDYYDVSLVDGFNVPVLVRPFNGKGNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFN 161 (266)
Q Consensus 84 g~pPaTlaEftl~--~~~d~YDVSlVdGfNlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~G~vv~C~SaC~~~~ 161 (266)
++||+|||||+|+ +++|||||||||||||||+|.|+++.+.|+.++|.+|||..||.||+|+.+|+||||+|||++|+
T Consensus 81 g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f~ 160 (218)
T smart00205 81 GRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTVFG 160 (218)
T ss_pred CCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhccC
Confidence 6999999999997 46899999999999999999998777789999999999999999999987789999999999999
Q ss_pred CCcccccCCCCCCCCCCCCchhhHHhccCCCccccccCCCCCeeeecC-CCeEEEecC
Q 024541 162 SDEYCCKGAFGDLTSCLASNYSKSFKQVCPAASSYAFDDRTSIITCSA-TDYIVGFCA 218 (266)
Q Consensus 162 ~d~yCC~G~~~~p~~C~pt~ys~~FK~~CP~AYsya~DD~ts~ftC~~-~~Y~VtFCP 218 (266)
+|||||+|+|++|++|+|+.||++||++||+||+||+||++++|+|++ ++|+|+|||
T Consensus 161 ~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 161 TDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999987 799999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=1.6e-81 Score=563.30 Aligned_cols=208 Identities=38% Similarity=0.831 Sum_probs=192.3
Q ss_pred EEEEeCCCCceeceeecCC-C----ccCCCceEecCCCceeecCCCCCe-eEEeeecccccC--CCCCCcccCCCCCcee
Q 024541 8 ITLVNVCQETIWPGIITQG-G----NYHGDGFTLKPGQSASYNPPDGWS-GRIWARTGCNFN--NSTSSCKTGSCGSSIN 79 (266)
Q Consensus 8 ~ti~N~C~~tVWpg~~~~~-~----~~~~~G~~L~pG~s~s~~vp~~Ws-GriWaRTgCs~d--~g~~~C~TGdCgg~l~ 79 (266)
|||+|||+|||||||+..+ . ++.++||+|+||++++|++|++|+ |||||||||+|| .|+++|+||||||.|+
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 7999999999999976532 2 345689999999999999999997 999999999998 5899999999999999
Q ss_pred cCCCCCCCceeEEEEecC-CccccccccccccccceeeecCCCCCCCCCCCCccccccCCCCccccc--cCCeeeecccc
Q 024541 80 CTSPGSLPVTIAEFTLGA-NVDYYDVSLVDGFNVPVLVRPFNGKGNCSNAGCDGDLRQNCPSDLAVK--DNGKVIGCRSA 156 (266)
Q Consensus 80 C~~~g~pPaTlaEftl~~-~~d~YDVSlVdGfNlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~--~~G~vv~C~Sa 156 (266)
|.+.+.||+|||||+|+. ++|||||||||||||||+|.|. . .|+.++|.+|||..||.||+|+ .+|++||||||
T Consensus 81 C~~~g~pP~TlaEftL~~~~~D~YdVSlVDGfNlP~~i~P~--~-~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~Sa 157 (229)
T cd09219 81 CENSDQPPASLAEFTLIGGKEDNYDISLVDGFNIPLNITNN--I-TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCISP 157 (229)
T ss_pred cCCCCCCCcceeeEEecCCCCceeEEEEecccccceEeccC--C-CCCCCcccCCCcccCCHHHccccCCCCccceecCH
Confidence 998889999999999984 6899999999999999999993 2 6999999999999999999997 46789999999
Q ss_pred ccc-cCC--CcccccCCCCCCCCCCC--CchhhHHhccCCCccccccCCCC--CeeeecC---CCeEEEecC
Q 024541 157 CDA-FNS--DEYCCKGAFGDLTSCLA--SNYSKSFKQVCPAASSYAFDDRT--SIITCSA---TDYIVGFCA 218 (266)
Q Consensus 157 C~~-~~~--d~yCC~G~~~~p~~C~p--t~ys~~FK~~CP~AYsya~DD~t--s~ftC~~---~~Y~VtFCP 218 (266)
|++ |++ |||||+|+|++|++|+| ++||++||++||+||||||||++ |+|||++ ++|+|||||
T Consensus 158 C~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 158 CNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred hhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999 655 99999999999999999 88999999999999999999999 7799986 799999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.5e-77 Score=533.91 Aligned_cols=206 Identities=52% Similarity=1.087 Sum_probs=169.0
Q ss_pred eCCCCceeceeecCC--CccCCCceEecCCCceeecCCCCCeeEEeeecccccC-CCCCCcccCCCCCceecCC-CCCCC
Q 024541 12 NVCQETIWPGIITQG--GNYHGDGFTLKPGQSASYNPPDGWSGRIWARTGCNFN-NSTSSCKTGSCGSSINCTS-PGSLP 87 (266)
Q Consensus 12 N~C~~tVWpg~~~~~--~~~~~~G~~L~pG~s~s~~vp~~WsGriWaRTgCs~d-~g~~~C~TGdCgg~l~C~~-~g~pP 87 (266)
|+|+||||||+++.+ ..+.++||+|+||++++|.+|++|+|||||||||+++ .|.++|+||||+|+++|.+ .+++|
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~P 80 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSPP 80 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----SS
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCCcccccccccCccc
Confidence 999999999976643 2345689999999999999999999999999999999 8899999999999999997 57899
Q ss_pred ceeEEEEec--CCccccccccccccccceeeecCCCCCCCCCCCCccccccCCCCccccccCCeeeeccccccccCCCcc
Q 024541 88 VTIAEFTLG--ANVDYYDVSLVDGFNVPVLVRPFNGKGNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDEY 165 (266)
Q Consensus 88 aTlaEftl~--~~~d~YDVSlVdGfNlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~G~vv~C~SaC~~~~~d~y 165 (266)
+|||||+|+ +++|||||||||||||||+|+|.+ ...|+.++|.+||+..||.||+++..+++|+|+|+|.+|++|+|
T Consensus 81 ~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~~ 159 (213)
T PF00314_consen 81 ATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDEY 159 (213)
T ss_dssp --EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHHH
T ss_pred ceeEEEEeccCCCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCCcc
Confidence 999999996 679999999999999999999995 57899999999999999999999866669999999999999999
Q ss_pred cccCCCCCCCCCCCCchhhHHhccCCCccccccCCCCCeeeecC-CCeEEEecC
Q 024541 166 CCKGAFGDLTSCLASNYSKSFKQVCPAASSYAFDDRTSIITCSA-TDYIVGFCA 218 (266)
Q Consensus 166 CC~G~~~~p~~C~pt~ys~~FK~~CP~AYsya~DD~ts~ftC~~-~~Y~VtFCP 218 (266)
||+|+|..|++|+++.|+++||++||+||+|||||++|+|+|.+ ++|+|||||
T Consensus 160 CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 160 CCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred ccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 99999999999999999999999999999999999999999986 699999998
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=1.8e-58 Score=394.39 Aligned_cols=151 Identities=49% Similarity=1.033 Sum_probs=135.9
Q ss_pred EEEEeCCCCceeceeecC-CCccCCCceEecCCCceeecCCCCCeeEEeeecccccC--CCCCCcccCCCCCceecCCCC
Q 024541 8 ITLVNVCQETIWPGIITQ-GGNYHGDGFTLKPGQSASYNPPDGWSGRIWARTGCNFN--NSTSSCKTGSCGSSINCTSPG 84 (266)
Q Consensus 8 ~ti~N~C~~tVWpg~~~~-~~~~~~~G~~L~pG~s~s~~vp~~WsGriWaRTgCs~d--~g~~~C~TGdCgg~l~C~~~g 84 (266)
|||+|||+||||||++.. +.++.++||+|+||++++|.+|++|+|||||||+|+|| .|+++|+||||++.++|.+.|
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g~g 80 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCNGGLNCQGTG 80 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCCceeecCCCC
Confidence 799999999999997653 33467799999999999999999999999999999999 489999999999999999888
Q ss_pred CCCceeEEEEec--CCccccccccccccccceeeecCCCCCCCCCCCCccccccCCCCccccccCCeeeeccccccccCC
Q 024541 85 SLPVTIAEFTLG--ANVDYYDVSLVDGFNVPVLVRPFNGKGNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNS 162 (266)
Q Consensus 85 ~pPaTlaEftl~--~~~d~YDVSlVdGfNlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~G~vv~C~SaC~~~~~ 162 (266)
.||+|||||+|+ +++|||||||||||||||+|.|.+ +.|+.++|.+
T Consensus 81 ~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~------------------------------ 128 (157)
T cd09215 81 GPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA------------------------------ 128 (157)
T ss_pred CCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC--CCCCCCcccc------------------------------
Confidence 899999999997 468999999999999999999974 3465555542
Q ss_pred CcccccCCCCCCCCCCCCchhhHHhccCCCccccccCCCCCeeeecC-CCeEEEec
Q 024541 163 DEYCCKGAFGDLTSCLASNYSKSFKQVCPAASSYAFDDRTSIITCSA-TDYIVGFC 217 (266)
Q Consensus 163 d~yCC~G~~~~p~~C~pt~ys~~FK~~CP~AYsya~DD~ts~ftC~~-~~Y~VtFC 217 (266)
||+||+|||||++|+|+|++ ++|+|+||
T Consensus 129 ---------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 ---------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ---------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999986 79999998
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=9.5e-52 Score=351.19 Aligned_cols=147 Identities=46% Similarity=0.959 Sum_probs=130.8
Q ss_pred EEEEeCCCCceeceeecCCCccCCCceEecCCCceeecCCCC-CeeEEeeecccccC-CCCCCcccCCCCCceecCCCCC
Q 024541 8 ITLVNVCQETIWPGIITQGGNYHGDGFTLKPGQSASYNPPDG-WSGRIWARTGCNFN-NSTSSCKTGSCGSSINCTSPGS 85 (266)
Q Consensus 8 ~ti~N~C~~tVWpg~~~~~~~~~~~G~~L~pG~s~s~~vp~~-WsGriWaRTgCs~d-~g~~~C~TGdCgg~l~C~~~g~ 85 (266)
|+|+|||+||||||++ + .++||+|+||+++++++|++ |+|||||||+|+|| .|+++|+|||||++++|.+.|.
T Consensus 1 ~~~~N~C~~tvWp~~~-~----~~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~~g~ 75 (151)
T cd09217 1 FTITNNCGYTVWPAAT-P----VGGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTGSGK 75 (151)
T ss_pred CEEEeCCCCcccceEe-c----CCCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCCCeeecCCCCC
Confidence 7999999999999964 3 25899999999999999997 99999999999999 8899999999999999998889
Q ss_pred CCceeEEEEecC-CccccccccccccccceeeecCCCCCCCCCCCCccccccCCCCccccccCCeeeeccccccccCCCc
Q 024541 86 LPVTIAEFTLGA-NVDYYDVSLVDGFNVPVLVRPFNGKGNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFNSDE 164 (266)
Q Consensus 86 pPaTlaEftl~~-~~d~YDVSlVdGfNlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~G~vv~C~SaC~~~~~d~ 164 (266)
||+|++||+|+. ++||||||+||||||||.|.|.+ ..|+.++|..|
T Consensus 76 pp~Tl~E~tl~~~~~d~YdISlVdG~NlP~~i~P~~--~~C~~~~C~~d------------------------------- 122 (151)
T cd09217 76 PPATLAEYTLNQSGQDFYDISLVDGFNVPMDFSPTG--GGCHAIPCAAN------------------------------- 122 (151)
T ss_pred CCceeEEEEecCCCCccEEEEeecccccceEEecCC--CCCCCCcCCCC-------------------------------
Confidence 999999999985 78999999999999999999973 23554444421
Q ss_pred ccccCCCCCCCCCCCCchhhHHhccCCCccccccCCCCCeeeecC-CCeEEEecC
Q 024541 165 YCCKGAFGDLTSCLASNYSKSFKQVCPAASSYAFDDRTSIITCSA-TDYIVGFCA 218 (266)
Q Consensus 165 yCC~G~~~~p~~C~pt~ys~~FK~~CP~AYsya~DD~ts~ftC~~-~~Y~VtFCP 218 (266)
||+||+|++|| .++++|+. .+|+|||||
T Consensus 123 -------------------------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 123 -------------------------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred -------------------------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 99999999994 79999975 599999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=6.3e-49 Score=334.51 Aligned_cols=146 Identities=42% Similarity=0.752 Sum_probs=124.6
Q ss_pred EEEEeCCCCceeceeecC-C-CccCCCceEecCCCceeecCCCCCeeEEeeecccccC-CCCCCcccCCCCCceecCC-C
Q 024541 8 ITLVNVCQETIWPGIITQ-G-GNYHGDGFTLKPGQSASYNPPDGWSGRIWARTGCNFN-NSTSSCKTGSCGSSINCTS-P 83 (266)
Q Consensus 8 ~ti~N~C~~tVWpg~~~~-~-~~~~~~G~~L~pG~s~s~~vp~~WsGriWaRTgCs~d-~g~~~C~TGdCgg~l~C~~-~ 83 (266)
|||+|||+|||||+++.. + ..+..+||+|+||++++|++|++|+||||+||||+++ .|.+.|+||||++ +.|.+ .
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~~ 79 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDPN 79 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCCC-cccCCCC
Confidence 799999999999996543 1 2345689999999999999999999999999999999 7889999999998 56654 6
Q ss_pred CCCCceeEEEEecC--CccccccccccccccceeeecCCCCCCCCCCCCccccccCCCCccccccCCeeeeccccccccC
Q 024541 84 GSLPVTIAEFTLGA--NVDYYDVSLVDGFNVPVLVRPFNGKGNCSNAGCDGDLRQNCPSDLAVKDNGKVIGCRSACDAFN 161 (266)
Q Consensus 84 g~pPaTlaEftl~~--~~d~YDVSlVdGfNlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~G~vv~C~SaC~~~~ 161 (266)
+.||+|||||||+. ++|||||||||||||||.|+|..+.+. |
T Consensus 80 g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g~----------------------------C-------- 123 (153)
T cd08961 80 RDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDGT----------------------------C-------- 123 (153)
T ss_pred CCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCCC----------------------------c--------
Confidence 78999999999974 789999999999999999999743221 2
Q ss_pred CCcccccCCCCCCCCCCCCchhhHHhccCCCccccccCCCCCeeeecC-CCeEEEe
Q 024541 162 SDEYCCKGAFGDLTSCLASNYSKSFKQVCPAASSYAFDDRTSIITCSA-TDYIVGF 216 (266)
Q Consensus 162 ~d~yCC~G~~~~p~~C~pt~ys~~FK~~CP~AYsya~DD~ts~ftC~~-~~Y~VtF 216 (266)
++.. |||+|||||+.++|+|++ .+|.|+|
T Consensus 124 ----------------~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 124 ----------------LSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ----------------cccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 1111 899999999899999976 4999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=96.97 E-value=0.011 Score=51.13 Aligned_cols=45 Identities=33% Similarity=0.375 Sum_probs=35.1
Q ss_pred CCceeEEEEecC--Ccccccccccccc---ccceeeecCCCCCCCCCCCCcc
Q 024541 86 LPVTIAEFTLGA--NVDYYDVSLVDGF---NVPVLVRPFNGKGNCSNAGCDG 132 (266)
Q Consensus 86 pPaTlaEftl~~--~~d~YDVSlVdGf---NlP~~i~p~~g~~~C~~~~C~~ 132 (266)
.|.|..||+|.. .+-|||+|-|.|. .-+|.|.|.+ ..|.++-|..
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~--~~Cp~I~Wp~ 121 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSD--PSCPSIVWPN 121 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCC--CCCCceECCC
Confidence 589999999974 4899999999996 4568888874 4677766653
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=93.57 E-value=0.16 Score=49.16 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=65.9
Q ss_pred EEEEEeCCCC--ceeceeecC----CC--------c---c--C----C----CceEe-cCCCceeecCCCCCeeEEeeec
Q 024541 7 NITLVNVCQE--TIWPGIITQ----GG--------N---Y--H----G----DGFTL-KPGQSASYNPPDGWSGRIWART 58 (266)
Q Consensus 7 t~ti~N~C~~--tVWpg~~~~----~~--------~---~--~----~----~G~~L-~pG~s~s~~vp~~WsGriWaRT 58 (266)
.|+|+|+=+. +||..|... +. . . . . =...| ++|++.++++|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 5899999987 899887532 10 0 0 0 0 01334 357889999998 999999665
Q ss_pred ccccCCCCCCcccCCCCCceecCCC---CCCCc----eeEEEEecCCccccccccccccccceeeecCC
Q 024541 59 GCNFNNSTSSCKTGSCGSSINCTSP---GSLPV----TIAEFTLGANVDYYDVSLVDGFNVPVLVRPFN 120 (266)
Q Consensus 59 gCs~d~g~~~C~TGdCgg~l~C~~~---g~pPa----TlaEftl~~~~d~YDVSlVdGfNlP~~i~p~~ 120 (266)
|=... +. ..+ +..+.=+.. .-|-. ..+|||+++..-|=++|.||-|.+||.|+-.+
T Consensus 81 g~~L~---F~-~~~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GSKLR---FK-VVT--NPALVQPAGWNPSDPNFNILHDWVEFTFNDAGLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CCeeE---EE-ecC--CCcccCCCCCCCCCCCccceEEEEEEEecCCceEecccceeeeccceEEEEec
Confidence 42111 11 001 112221110 11111 45899998766789999999999999998664
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=92.33 E-value=0.38 Score=46.91 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=51.4
Q ss_pred Eec-CCCceeecCCCCCeeEEeeecccccCCCCCCcccCCCCCceecCCC---CCCCc----eeEEEEecCCcccccccc
Q 024541 35 TLK-PGQSASYNPPDGWSGRIWARTGCNFNNSTSSCKTGSCGSSINCTSP---GSLPV----TIAEFTLGANVDYYDVSL 106 (266)
Q Consensus 35 ~L~-pG~s~s~~vp~~WsGriWaRTgCs~d~g~~~C~TGdCgg~l~C~~~---g~pPa----TlaEftl~~~~d~YDVSl 106 (266)
.|. +|++.++++|.-++||||=-.+=... |- ...+ |..+.=+.- .-|-. ..+|||+++..-|=++|.
T Consensus 58 pl~~~G~~~titiP~i~sgRIyfS~g~~L~---F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~~~l~~N~S~ 132 (369)
T cd09220 58 PLGAPGSTTTVTIPILAGGRIWFSVDDKLT---FL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNSGQLYANISY 132 (369)
T ss_pred ecCCCCCceeEEcccccceEEEEEcCCeEE---EE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecCCceEecccc
Confidence 443 47889999999999999965542111 10 1111 211211110 11111 458999997777899999
Q ss_pred ccccccceeeecCC
Q 024541 107 VDGFNVPVLVRPFN 120 (266)
Q Consensus 107 VdGfNlP~~i~p~~ 120 (266)
||-|.+||.|+-.+
T Consensus 133 VD~~~~P~~l~l~~ 146 (369)
T cd09220 133 VDFVGLPLGLSLTT 146 (369)
T ss_pred eeeeccCeEEEEEc
Confidence 99999999998664
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=76.52 E-value=2 Score=41.12 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=28.5
Q ss_pred eeEEEEecCCccccccccccccccceeeecCC
Q 024541 89 TIAEFTLGANVDYYDVSLVDGFNVPVLVRPFN 120 (266)
Q Consensus 89 TlaEftl~~~~d~YDVSlVdGfNlP~~i~p~~ 120 (266)
..+|||+++..-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n~~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNATGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecCCceEecccceeeeccCeEEEEEc
Confidence 45899999878899999999999999998775
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=55.68 E-value=5.4 Score=38.27 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.6
Q ss_pred CchhhHHhccCC--CccccccCCC
Q 024541 180 SNYSKSFKQVCP--AASSYAFDDR 201 (266)
Q Consensus 180 t~ys~~FK~~CP--~AYsya~DD~ 201 (266)
+.|++++++.-. .||.|||||-
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccc
Confidence 568999999997 8999999995
No 13
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=52.57 E-value=6.6 Score=38.50 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.2
Q ss_pred CCchhhHHhccCC--CccccccCCC
Q 024541 179 ASNYSKSFKQVCP--AASSYAFDDR 201 (266)
Q Consensus 179 pt~ys~~FK~~CP--~AYsya~DD~ 201 (266)
-++|++++++.-+ .+|.|||||-
T Consensus 320 tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 320 TNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred chHHHHHHHHhccCCCeeccccccc
Confidence 3579999999998 7899999995
No 14
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=46.71 E-value=9.2 Score=37.28 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.3
Q ss_pred CchhhHHhccCC--CccccccCCC
Q 024541 180 SNYSKSFKQVCP--AASSYAFDDR 201 (266)
Q Consensus 180 t~ys~~FK~~CP--~AYsya~DD~ 201 (266)
++|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 579999999987 6899999995
No 15
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.13 E-value=45 Score=27.12 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=29.2
Q ss_pred ceEEEEEeCCCCceeceeecCC-CccCCCc-eEecCCCceee
Q 024541 5 AKNITLVNVCQETIWPGIITQG-GNYHGDG-FTLKPGQSASY 44 (266)
Q Consensus 5 a~t~ti~N~C~~tVWpg~~~~~-~~~~~~G-~~L~pG~s~s~ 44 (266)
.+-|+|-|+-++.|+++|.-.. ..+...| +.|+||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 3568999999999999975432 2333445 68999987666
No 16
>PHA03094 dUTPase; Provisional
Probab=39.56 E-value=30 Score=29.16 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.0
Q ss_pred ceEecCCCcee------ecCCCCCeeEEeeecccc
Q 024541 33 GFTLKPGQSAS------YNPPDGWSGRIWARTGCN 61 (266)
Q Consensus 33 G~~L~pG~s~s------~~vp~~WsGriWaRTgCs 61 (266)
.+.|.||+... +.+|.+|.|.|++|.+-.
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla 69 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLS 69 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEcccccc
Confidence 46889998876 678999999999997653
No 17
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=36.01 E-value=36 Score=24.85 Aligned_cols=23 Identities=43% Similarity=0.913 Sum_probs=18.0
Q ss_pred eEecCCCceeecCCCCC-----eeEEee
Q 024541 34 FTLKPGQSASYNPPDGW-----SGRIWA 56 (266)
Q Consensus 34 ~~L~pG~s~s~~vp~~W-----sGriWa 56 (266)
|+|+||+..++.+..+. +|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 78889999888887664 488884
No 18
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=33.30 E-value=97 Score=25.20 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=36.7
Q ss_pred cceEEEEEeCCCCceeceeecC----CC---------------ccCCCceEecCCCceeecC-CCCCeeEEeee
Q 024541 4 SAKNITLVNVCQETIWPGIITQ----GG---------------NYHGDGFTLKPGQSASYNP-PDGWSGRIWAR 57 (266)
Q Consensus 4 ~a~t~ti~N~C~~tVWpg~~~~----~~---------------~~~~~G~~L~pG~s~s~~v-p~~WsGriWaR 57 (266)
...+++|+|...-+|++|+.-. +. -.+++..+.+||+++++++ |-+=..+|+|-
T Consensus 20 ~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G~ 93 (101)
T cd00407 20 EAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYGF 93 (101)
T ss_pred CEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEcc
Confidence 3589999999999999996311 10 1245667889999998886 32333455543
No 19
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=32.32 E-value=21 Score=30.08 Aligned_cols=20 Identities=20% Similarity=0.614 Sum_probs=15.1
Q ss_pred CCCCCcccCCCCCceecCCC
Q 024541 64 NSTSSCKTGSCGSSINCTSP 83 (266)
Q Consensus 64 ~g~~~C~TGdCgg~l~C~~~ 83 (266)
.|.+.|+-|||||.|.|..+
T Consensus 82 ~g~Gp~~PGdCGg~L~C~HG 101 (127)
T PF00947_consen 82 IGEGPAEPGDCGGILRCKHG 101 (127)
T ss_dssp EEE-SSSTT-TCSEEEETTC
T ss_pred eecccCCCCCCCceeEeCCC
Confidence 35679999999999999854
No 20
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=30.18 E-value=1.2e+02 Score=24.65 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=36.9
Q ss_pred cceEEEEEeCCCCceeceeecC----CC---------------ccCCCceEecCCCceeecC-CCCCeeEEeee
Q 024541 4 SAKNITLVNVCQETIWPGIITQ----GG---------------NYHGDGFTLKPGQSASYNP-PDGWSGRIWAR 57 (266)
Q Consensus 4 ~a~t~ti~N~C~~tVWpg~~~~----~~---------------~~~~~G~~L~pG~s~s~~v-p~~WsGriWaR 57 (266)
...+++|+|...-+|++|+.-. +. -.+++..+.+||+++++.+ |-+=..+|+|-
T Consensus 20 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~ 93 (101)
T TIGR00192 20 KTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYGF 93 (101)
T ss_pred cEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEcc
Confidence 4579999999999999996311 10 1245667889999999886 33334455543
No 21
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=27.57 E-value=20 Score=30.77 Aligned_cols=10 Identities=40% Similarity=0.777 Sum_probs=7.8
Q ss_pred ccccccccee
Q 024541 106 LVDGFNVPVL 115 (266)
Q Consensus 106 lVdGfNlP~~ 115 (266)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998554
No 22
>PRK13203 ureB urease subunit beta; Reviewed
Probab=27.26 E-value=1.4e+02 Score=24.37 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=36.5
Q ss_pred cceEEEEEeCCCCceeceeecC----CC---------------ccCCCceEecCCCceeecC-CCCCeeEEeee
Q 024541 4 SAKNITLVNVCQETIWPGIITQ----GG---------------NYHGDGFTLKPGQSASYNP-PDGWSGRIWAR 57 (266)
Q Consensus 4 ~a~t~ti~N~C~~tVWpg~~~~----~~---------------~~~~~G~~L~pG~s~s~~v-p~~WsGriWaR 57 (266)
...+++|+|...-+|++|+.-. +. -.+++..+.+||+++++.+ +-+=..+|+|-
T Consensus 20 ~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~ 93 (102)
T PRK13203 20 ETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAGARRVYGF 93 (102)
T ss_pred CEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEcc
Confidence 3579999999999999996311 10 1245667889999998886 32333455543
No 23
>PRK13202 ureB urease subunit beta; Reviewed
Probab=27.04 E-value=1.5e+02 Score=24.28 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=36.1
Q ss_pred ceEEEEEeCCCCceeceeecC----CC---------------ccCCCceEecCCCceeecC-CCCCeeEEeee
Q 024541 5 AKNITLVNVCQETIWPGIITQ----GG---------------NYHGDGFTLKPGQSASYNP-PDGWSGRIWAR 57 (266)
Q Consensus 5 a~t~ti~N~C~~tVWpg~~~~----~~---------------~~~~~G~~L~pG~s~s~~v-p~~WsGriWaR 57 (266)
..+++|+|...-+|++|+.-. +. -.+++..+.+||+++++.+ |-+=..+|+|-
T Consensus 22 ~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G~ 94 (104)
T PRK13202 22 RLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGGRREVPGL 94 (104)
T ss_pred eEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccCCeEEEcC
Confidence 579999999999999996311 10 1245667889999998886 33333455544
No 24
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=26.57 E-value=44 Score=26.93 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=33.4
Q ss_pred ceEEEEEeCCCCce---eceeecCCCccCC-----CceEecCCCceeecCCCCC-eeEEe
Q 024541 5 AKNITLVNVCQETI---WPGIITQGGNYHG-----DGFTLKPGQSASYNPPDGW-SGRIW 55 (266)
Q Consensus 5 a~t~ti~N~C~~tV---Wpg~~~~~~~~~~-----~G~~L~pG~s~s~~vp~~W-sGriW 55 (266)
...|+|+|+=++++ |-|+..+..+..+ .-..+.||+++++.++..- .|.+|
T Consensus 35 ~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~w 94 (117)
T PF07732_consen 35 TVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYW 94 (117)
T ss_dssp EEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEE
T ss_pred eeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeecccccee
Confidence 46899999998775 5553333321111 1257899998888876554 78888
No 25
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=26.53 E-value=79 Score=23.68 Aligned_cols=28 Identities=29% Similarity=0.724 Sum_probs=21.0
Q ss_pred ceEecCCCcee------ecCCCCCeeEEeeeccc
Q 024541 33 GFTLKPGQSAS------YNPPDGWSGRIWARTGC 60 (266)
Q Consensus 33 G~~L~pG~s~s------~~vp~~WsGriWaRTgC 60 (266)
++.|.|++... +.+|.++.|.|++|.+-
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~ 46 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSL 46 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchh
Confidence 47788877543 45788999999999654
Done!