BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024542
         (266 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JMW|A Chain A, Structure Of Dna-Binding Domain Of Arabidopsis Gt-1
          Length = 86

 Score = 35.8 bits (81), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 86  WASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK 120
           W  +SS  +  G +R P  C  +W NL  +FKK K
Sbjct: 36  WEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAK 70


>pdb|2EBI|A Chain A, Arabidopsis Gt-1 Dna-Binding Domain With T133d
           Phosphomimetic Mutation
          Length = 86

 Score = 34.7 bits (78), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 86  WASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK 120
           W  +SS  +  G +R P  C  +W NL  +FKK K
Sbjct: 36  WEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK 70


>pdb|1T5G|A Chain A, Arginase-F2-L-Arginine Complex
 pdb|1T5G|B Chain B, Arginase-F2-L-Arginine Complex
 pdb|1T5G|C Chain C, Arginase-F2-L-Arginine Complex
 pdb|1T5F|A Chain A, Arginase I-Aoh Complex
 pdb|1T5F|B Chain B, Arginase I-Aoh Complex
 pdb|1T5F|C Chain C, Arginase I-Aoh Complex
          Length = 314

 Score = 33.5 bits (75), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 82  IEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKD-GTESFWVMRND 139
           IE   A  S  C R GV +GP   RK     AG  +K+KE E +V+D G  +F  + ND
Sbjct: 3   IEIIGAPFSKGCPRGGVEKGPAALRK-----AGLVEKLKETEYNVRDHGDLAFVDVPND 56


>pdb|1ZPE|A Chain A, Arginase I Covalently Modified With Butylamine At Q19c
 pdb|1ZPE|B Chain B, Arginase I Covalently Modified With Butylamine At Q19c
 pdb|1ZPE|C Chain C, Arginase I Covalently Modified With Butylamine At Q19c
 pdb|1ZPG|A Chain A, Arginase I Covalently Modified With Propylamine At Q19c
 pdb|1ZPG|B Chain B, Arginase I Covalently Modified With Propylamine At Q19c
 pdb|1ZPG|C Chain C, Arginase I Covalently Modified With Propylamine At Q19c
          Length = 314

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 82  IEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKD-GTESFWVMRND 139
           IE   A  S    R GV +GP   RK     AG  +K+KE E +V+D G  +F  + ND
Sbjct: 3   IEIIGAPFSKGXPRGGVEKGPAALRK-----AGLVEKLKETEYNVRDHGDLAFVDVPND 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,670,583
Number of Sequences: 62578
Number of extensions: 294898
Number of successful extensions: 382
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 5
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)