BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024542
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2
PE=2 SV=1
Length = 575
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 28 TTTASIDGGDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWA 87
TT + ++ +P RW + E+ LI R+R+ A +G P W
Sbjct: 378 TTIKMGNYDNNHSVSPSSSRWPKTEVEALI--------RIRKNLEANYQ-ENGTKGPLWE 428
Query: 88 SVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKE 121
+S+ +R G NR +C+++W N+ FKK+KE
Sbjct: 429 EISAGMRRLGYNRSAKRCKEKWENINKYFKKVKE 462
>sp|Q9C882|GTL1_ARATH Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1
PE=1 SV=2
Length = 587
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 47 RWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCR 106
RW + EIL LI + E R + G+ W +S+ KR G NR +C+
Sbjct: 435 RWPKAEILALINLRSGMEPRYQDNVPKGLL---------WEEISTSMKRMGYNRNAKRCK 485
Query: 107 KRWSNLAGDFKKIKE 121
++W N+ +KK+KE
Sbjct: 486 EKWENINKYYKKVKE 500
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 47 RWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCR 106
RW R+E L L++ + ++ R P W VS G R +C+
Sbjct: 62 RWPREETLALLRIRSDMDSTFRDATLKA---------PLWEHVSRKLLELGYKRSSKKCK 112
Query: 107 KRWSNLAGDFKKIKEWESHVKDG 129
+++ N+ +K+ KE DG
Sbjct: 113 EKFENVQKYYKRTKETRGGRHDG 135
>sp|Q9FX53|TGT1_ARATH Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1
PE=1 SV=1
Length = 406
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 25 EQRTTTASIDGGDDGCKAP--RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQI 82
+Q+ G D KAP R W + E LI RRG G+ S
Sbjct: 62 QQQILLGESSGEDHEVKAPKKRAETWVQDETRSLIM--------FRRG-MDGLFNTSKSN 112
Query: 83 EPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLRR 142
+ W +SS + G +R P C +W NL +FKK K + S++ D+ R
Sbjct: 113 KHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILR 172
Query: 143 ER 144
ER
Sbjct: 173 ER 174
>sp|Q9LU92|TGT4_ARATH Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4
PE=2 SV=1
Length = 372
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 79/212 (37%), Gaps = 44/212 (20%)
Query: 35 GGDDG--CKAP--RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVS 90
GG+D KAP R W + E LI +R +N ++ + W +S
Sbjct: 38 GGEDHEIIKAPKKRAETWAQDETRTLISLRREMDNLFNTSKSN---------KHLWEQIS 88
Query: 91 SYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDG---TESFWVMRNDLRRERKLP 147
+ G +R P C +W N+ +FKK K+ E G S++ D+ RERK
Sbjct: 89 KKMREKGFDRSPSMCTDKWRNILKEFKKAKQHEDKATSGGSTKMSYYNEIEDIFRERK-- 146
Query: 148 GFFDREVYDILDGAATVASSASPGLGLALAPAEETTTDEAVFDSGRSAAADDGLFSDFEP 207
++V A T SSA + TD+ D+G S F
Sbjct: 147 ----KKVAFYKSPATTTPSSAKVDSFMQF-------TDKGFEDTGIS----------FTS 185
Query: 208 EETTGTPVKD-----DAPAEAAPAAAKPISAT 234
E G P + D P AA PI+A
Sbjct: 186 VEANGRPTLNLETELDHDGLPLPIAADPITAN 217
>sp|Q09499|IRE1_CAEEL Serine/threonine-protein kinase/endoribonuclease ire-1
OS=Caenorhabditis elegans GN=ire-1 PE=2 SV=2
Length = 967
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 112 LAGDFKKIKEWESH-VKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATVASSASP 170
L D +K + ++S V+D + MRN R+LP + + DI D +S P
Sbjct: 828 LKEDLRKFRTYKSFSVRDLLRA---MRNKKHHYRELPEDVRQSLGDIPDQFLHYFTSRFP 884
Query: 171 GLGLALAPAEETTTDEAVFDSGRSAAADDGLFSDFEPEETTGTPVKDDAPAEAAPAAAKP 230
L L + A E + EAVF S ++ E EE +K++ E A KP
Sbjct: 885 RLLLHVYKATEYCSGEAVFKRYYSDDVRARMYPIVEEEERVRKKIKEEMANEVWARAPKP 944
Query: 231 ISATMPI 237
+ P+
Sbjct: 945 VEQRTPL 951
>sp|Q9LZS0|PTL_ARATH Trihelix transcription factor PTL OS=Arabidopsis thaliana GN=PTL
PE=2 SV=1
Length = 591
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 47 RWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSS-YCKRHGVNRGPVQC 105
RW RQE L L++ + +++ + G P W VS + HG R +C
Sbjct: 119 RWPRQETLTLLEIRSRLDHKFKEANQKG---------PLWDEVSRIMSEEHGYQRSGKKC 169
Query: 106 RKRWSNLAGDFKKIKEWESHVKDG 129
R+++ NL ++K KE ++ +DG
Sbjct: 170 REKFENLYKYYRKTKEGKAGRQDG 193
>sp|Q8H181|GTL2_ARATH Trihelix transcription factor GTL2 OS=Arabidopsis thaliana
GN=At5g28300 PE=2 SV=1
Length = 619
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 47 RWTRQEILVLIQGKRVAENRVRRGRAAGMGFG-SGQIEPKWASVSSYCKRHGVNRGPVQC 105
RW + E+L LI +R N S + P W +S G R +C
Sbjct: 459 RWPKDEVLALINIRRSISNMNDDDHKDENSLSTSSKAVPLWERISKKMLEIGYKRSAKRC 518
Query: 106 RKRWSNLAGDFKKIKE 121
+++W N+ F+K K+
Sbjct: 519 KEKWENINKYFRKTKD 534
>sp|Q5ZHX5|MSD2_CHICK Myb/SANT-like DNA-binding domain-containing protein 2 OS=Gallus
gallus GN=MSANTD2 PE=2 SV=1
Length = 556
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 48 WTRQEILVLIQ---GKRVAENRVRRGRAAGMGFGSGQIEP-KWASVSSYCKRHGVNRGPV 103
WT E LI +R+ E R ++ AG FGS P + VS G R P
Sbjct: 100 WTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPS 159
Query: 104 QCRKRWSNLAGDFKKIKE 121
QCR+R L + ++KE
Sbjct: 160 QCRERIKTLRRCYSRVKE 177
>sp|Q6NZR2|MSD2_MOUSE Myb/SANT-like DNA-binding domain-containing protein 2 OS=Mus
musculus GN=Msantd2 PE=1 SV=1
Length = 559
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 48 WTRQEILVLIQ---GKRVAENRVRRGRAAGMGFGSGQIEP-KWASVSSYCKRHGVNRGPV 103
WT E LI +R+ E R ++ AG FGS P + VS G R P
Sbjct: 104 WTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPS 163
Query: 104 QCRKRWSNLAGDFKKIKE 121
QCR+R L + ++KE
Sbjct: 164 QCRERIKTLRRCYSRVKE 181
>sp|Q6P1R3|MSD2_HUMAN Myb/SANT-like DNA-binding domain-containing protein 2 OS=Homo
sapiens GN=MSANTD2 PE=1 SV=1
Length = 559
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 48 WTRQEILVLIQ---GKRVAENRVRRGRAAGMGFGSGQIEP-KWASVSSYCKRHGVNRGPV 103
WT E LI +R+ E R ++ AG FGS P + VS G R P
Sbjct: 104 WTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKAPGPAMYERVSRALAELGYERTPS 163
Query: 104 QCRKRWSNLAGDFKKIKE 121
QCR+R L + ++KE
Sbjct: 164 QCRERIKTLRRCYSRVKE 181
>sp|P09983|HLYAC_ECOLX Hemolysin, chromosomal OS=Escherichia coli GN=hlyA PE=1 SV=1
Length = 1023
Score = 32.7 bits (73), Expect = 2.9, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 82 IEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLR 141
+E + +S Y K + V R + ++ W L G+ + G +S+ + +
Sbjct: 452 LEDNFKILSQYNKEYSVERSVLITQQHWDTLIGELAGVTRNGDKTLSG-KSYIDYYEEGK 510
Query: 142 RERKLPGFFDREVYDILDGAATVASSASPGL----GLALAPAEE 181
R K P F ++V+D L G ++ S S L L P EE
Sbjct: 511 RLEKKPDEFQKQVFDPLKGNIDLSDSKSSTLLKFVTPLLTPGEE 554
>sp|Q8KAP3|PLSX_CHLTE Phosphate acyltransferase OS=Chlorobium tepidum (strain ATCC 49652
/ DSM 12025 / TLS) GN=plsX PE=3 SV=1
Length = 331
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 17/113 (15%)
Query: 119 IKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATVA------------- 165
I E E D + W M E+K+ + E +DIL G AT+
Sbjct: 175 IGEEEGKGPDYLKQAWKMLQKAHEEQKINFIGNIEGHDILAGKATIVVCDGLVGNTILKF 234
Query: 166 -SSASPGLGLALAPAEETTTDEAVFDSGRSAAADD---GLFSDFEPEETTGTP 214
S LG PA E E D + A G+F F+ E+ G P
Sbjct: 235 GESIPHFLGAIFKPALEKLVKEGKLDQNSAVLAGQTFKGIFEPFDVEKFGGVP 287
>sp|P55128|RTX11_ACTPL RTX-I toxin determinant A from serotypes 1/9 OS=Actinobacillus
pleuropneumoniae GN=apxIA PE=1 SV=1
Length = 1023
Score = 31.2 bits (69), Expect = 7.4, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 79 SGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRN 138
S +E + +S Y K + V R ++RW G+ I S K G +++
Sbjct: 446 SAFLEDTFELLSQYNKEYSVERVVAITQQRWDVNIGELAGITRKGSDTKSG-KAYVDFFE 504
Query: 139 DLRRERKLPGFFDREVYDILDGAATVAS 166
+ + K P FD++V+D L+G ++S
Sbjct: 505 EGKLLEKEPDRFDKKVFDPLEGKIDLSS 532
>sp|A9S6X4|DRE21_PHYPA Anamorsin homolog 1 OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_163171 PE=3 SV=1
Length = 344
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 137 RNDLRRERKLPGFFDREVYDILDGA--ATVASSASPGLGLALAPAEETTTDE-AVFDSGR 193
+ L R L GF + EV D + G A +++S L + + + + D +VF +
Sbjct: 110 KAQLERNLLLAGFVNLEVVDSVVGVEIAKACTTSSVALNVVAVKSSKPSWDTGSVFQIRK 169
Query: 194 SAAADDGLF---SDFEPEETTGTPVKDDAPAEAAPAAAKPISA 233
+ +G F +++P + T DD P + PA +S+
Sbjct: 170 KVSNQNGNFRTSGNYQPVKLTAGETVDDFPLNSKPAVKVDLSS 212
>sp|Q60AY9|SYFB_METCA Phenylalanine--tRNA ligase beta subunit OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=pheT PE=3
SV=1
Length = 791
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 147 PGFFDREVYDILDGAATVASSASPGLGLALAPAEETTTDEAV 188
P D ++D+ GA A S LG+ L AEET TD+ V
Sbjct: 729 PLVRDTVLFDVYSGAGVEAGKKSVALGVTLQDAEETLTDDRV 770
>sp|Q9SDW0|TGT3A_ARATH Trihelix transcription factor GT-3a OS=Arabidopsis thaliana
GN=GT-3A PE=1 SV=1
Length = 323
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 28 TTTASIDGGDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWA 87
+TTA++D G G R+P+W+ +E L+ R + + + W
Sbjct: 32 STTATMDPGGGGGGGERIPQWSIEETKELL---------AIREELDQTFMETKRNKLLWE 82
Query: 88 SVSSYCKRHGVNRGPVQCRKRWSNLAGDFK 117
V++ G R QC+ +W NL +K
Sbjct: 83 VVAAKMADKGFVRSAEQCKSKWKNLVTRYK 112
>sp|A8ABX8|Y1254_IGNH4 UPF0173 metal-dependent hydrolase Igni_1254 OS=Ignicoccus
hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
GN=Igni_1254 PE=3 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 168 ASPGLGLALAPAEETTTDEAV------FDSGRSA---AADDGLFSDFE 206
+PGLG+AL PA ++ D+ V F G++ A D GLF++ +
Sbjct: 105 VAPGLGIALTPATHSSYDKGVPTGAIIFKDGKALVYHAGDTGLFAEMQ 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,620,767
Number of Sequences: 539616
Number of extensions: 4929567
Number of successful extensions: 14472
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 14420
Number of HSP's gapped (non-prelim): 77
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)