Query 024542
Match_columns 266
No_of_seqs 129 out of 157
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 05:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13837 Myb_DNA-bind_4: Myb/S 99.7 3.2E-17 6.9E-22 124.3 6.5 74 46-126 2-77 (90)
2 KOG4282 Transcription factor G 99.4 9.4E-13 2E-17 123.1 12.3 72 45-125 54-125 (345)
3 PF13873 Myb_DNA-bind_5: Myb/S 98.4 6.8E-07 1.5E-11 66.9 6.5 74 44-119 1-75 (78)
4 PF00249 Myb_DNA-binding: Myb- 98.1 5.2E-06 1.1E-10 57.4 5.0 47 46-113 2-48 (48)
5 PF13921 Myb_DNA-bind_6: Myb-l 97.7 6.3E-05 1.4E-09 53.6 4.9 42 48-112 1-43 (60)
6 smart00717 SANT SANT SWI3, AD 97.6 0.00019 4.1E-09 47.1 5.4 47 46-114 2-48 (49)
7 PF12776 Myb_DNA-bind_3: Myb/S 97.4 0.0015 3.2E-08 50.0 8.5 73 47-126 1-75 (96)
8 cd00167 SANT 'SWI3, ADA2, N-Co 97.3 0.0004 8.7E-09 45.0 4.5 45 47-113 1-45 (45)
9 PLN03212 Transcription repress 97.1 0.00061 1.3E-08 63.2 4.9 50 44-114 24-73 (249)
10 PLN03091 hypothetical protein; 96.8 0.0017 3.7E-08 64.6 5.1 52 41-113 10-61 (459)
11 smart00595 MADF subfamily of S 96.2 0.01 2.3E-07 44.9 4.9 38 83-125 27-64 (89)
12 PLN03212 Transcription repress 96.1 0.013 2.8E-07 54.5 6.0 53 41-116 74-126 (249)
13 PLN03091 hypothetical protein; 95.9 0.019 4.1E-07 57.4 6.7 53 43-118 65-117 (459)
14 PF10545 MADF_DNA_bdg: Alcohol 95.1 0.036 7.8E-07 40.7 4.2 39 83-124 26-64 (85)
15 KOG0048 Transcription factor, 92.5 0.14 3.1E-06 46.3 3.9 54 43-117 7-61 (238)
16 KOG1279 Chromatin remodeling f 91.6 0.25 5.3E-06 50.3 4.7 49 41-112 249-297 (506)
17 KOG0051 RNA polymerase I termi 86.4 1.4 3.1E-05 45.8 5.8 70 43-119 434-513 (607)
18 COG5259 RSC8 RSC chromatin rem 79.3 3.2 6.9E-05 42.3 5.0 57 44-123 278-334 (531)
19 KOG0457 Histone acetyltransfer 69.9 9.5 0.00021 38.5 5.6 75 45-161 72-146 (438)
20 KOG0051 RNA polymerase I termi 63.0 12 0.00025 39.3 4.9 48 44-115 383-430 (607)
21 KOG0048 Transcription factor, 60.0 25 0.00055 31.9 6.0 50 41-113 58-107 (238)
22 KOG0049 Transcription factor, 59.1 13 0.00029 39.7 4.5 63 41-125 356-418 (939)
23 TIGR01557 myb_SHAQKYF myb-like 57.8 24 0.00052 25.8 4.5 44 44-108 2-49 (57)
24 KOG0049 Transcription factor, 50.8 38 0.00082 36.5 6.2 53 41-114 249-301 (939)
25 PF09356 Phage_BR0599: Phage c 49.4 8.2 0.00018 29.9 0.9 20 95-114 50-69 (80)
26 PF12108 SF3a60_bindingd: Spli 44.5 23 0.0005 22.9 2.3 22 105-126 5-26 (28)
27 KOG0050 mRNA splicing protein 44.5 39 0.00084 35.3 5.0 58 46-125 8-65 (617)
28 COG5147 REB1 Myb superfamily p 42.2 26 0.00057 36.1 3.5 55 41-118 68-122 (512)
29 PRK13923 putative spore coat p 40.5 73 0.0016 28.4 5.6 58 43-117 3-61 (170)
30 TIGR02894 DNA_bind_RsfA transc 36.8 73 0.0016 28.3 5.0 59 43-118 2-61 (161)
31 KOG0050 mRNA splicing protein 26.3 92 0.002 32.7 4.3 35 83-122 78-112 (617)
32 COG5114 Histone acetyltransfer 20.0 1.5E+02 0.0033 29.5 4.3 44 46-111 64-107 (432)
No 1
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.69 E-value=3.2e-17 Score=124.27 Aligned_cols=74 Identities=32% Similarity=0.598 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHH--HhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024542 46 PRWTRQEILVLIQGKRV--AENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWE 123 (266)
Q Consensus 46 p~WT~~EtLvLI~arre--~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdwE 123 (266)
.+||.+||++||+++.+ ++.++..++.. .....|+.|++.|..+||.|++.||+.||+||.+.||+++++.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~-------~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~ 74 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKK-------RNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRN 74 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS---------HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccc-------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999 55556432211 1245899999999999999999999999999999999999998
Q ss_pred hcc
Q 024542 124 SHV 126 (266)
Q Consensus 124 r~~ 126 (266)
...
T Consensus 75 ~~~ 77 (90)
T PF13837_consen 75 KKS 77 (90)
T ss_dssp S--
T ss_pred CCC
Confidence 665
No 2
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.44 E-value=9.4e-13 Score=123.14 Aligned_cols=72 Identities=32% Similarity=0.577 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024542 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (266)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdwEr 124 (266)
.++|+.+||++||.++.+++..|..++++ .++|+.|+..|..+||.|++.||+.||+||.+.||+.+.-..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k---------~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~ 124 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLK---------GPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKE 124 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhc---------ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccC
Confidence 89999999999999999999988877643 459999999999999999999999999999999999998775
Q ss_pred c
Q 024542 125 H 125 (266)
Q Consensus 125 ~ 125 (266)
.
T Consensus 125 ~ 125 (345)
T KOG4282|consen 125 G 125 (345)
T ss_pred C
Confidence 4
No 3
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.42 E-value=6.8e-07 Score=66.92 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=54.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGV-NRGPVQCRKRWSNLAGDFKKI 119 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv-~Rs~~QCr~KWeNLl~dYKkI 119 (266)
|.+|||.+|..+||+.......-+ .++.. ...........|+.|+..+...|. .|++.||+++|+||...=|+.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il-~~k~~-~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~ 75 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDIL-ENKFS-DSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK 75 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHH-hcccc-cHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999855443332 23211 001111236699999999999777 899999999999999877664
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.12 E-value=5.2e-06 Score=57.37 Aligned_cols=47 Identities=28% Similarity=0.528 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 024542 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (266)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (266)
..||.+|...|+++.+.. | ...|..|+.+|- ..|++.||+.+|.||+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~------g------------~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKY------G------------KDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHS------T------------TTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh------C------------CcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 589999999999985533 2 115999999998 7899999999999974
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.72 E-value=6.3e-05 Score=53.61 Aligned_cols=42 Identities=38% Similarity=0.796 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHH-H
Q 024542 48 WTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN-L 112 (266)
Q Consensus 48 WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN-L 112 (266)
||.+|...|+++.... | ..|..|+..|. +|++.||+.||.+ |
T Consensus 1 WT~eEd~~L~~~~~~~------g-------------~~W~~Ia~~l~----~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY------G-------------NDWKKIAEHLG----NRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHH------T-------------S-HHHHHHHST----TS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH------C-------------cCHHHHHHHHC----cCCHHHHHHHHHHHC
Confidence 9999999999986542 2 17999999984 8999999999999 5
No 6
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.59 E-value=0.00019 Score=47.07 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
..||.+|...|+.+.... | ...|..|+.++. .|++.||+.+|.+|..
T Consensus 2 ~~Wt~~E~~~l~~~~~~~------g------------~~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKY------G------------KNNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHH------C------------cCCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 579999999999985432 2 027999999996 8999999999999863
No 7
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=97.35 E-value=0.0015 Score=49.99 Aligned_cols=73 Identities=23% Similarity=0.450 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHHhHHHhhccc-CCCCCCCCCCcchHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024542 47 RWTRQEILVLIQGKRVAENRVRRGRA-AGMGFGSGQIEPKWASVSSYCKR-HGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (266)
Q Consensus 47 ~WT~~EtLvLI~arre~e~r~~~g~r-~~~~~~s~q~~~kWe~Vs~~c~~-~Gv~Rs~~QCr~KWeNLl~dYKkIrdwEr 124 (266)
+||...+.+||++-.+.-.. |.+ ....++ ..-|+.|...+.. .|...+..||+.||..|-++|+-++.-..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~---g~~~~~~~fk----~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~ 73 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINK---GNRPTNGGFK----KEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRN 73 (96)
T ss_pred CCChHHHHHHHHHHHHHHHh---CCCCCCCCcC----HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 69999999999995444333 333 233343 5589999999876 77888999999999999999999999887
Q ss_pred cc
Q 024542 125 HV 126 (266)
Q Consensus 125 ~~ 126 (266)
+.
T Consensus 74 ~s 75 (96)
T PF12776_consen 74 HS 75 (96)
T ss_pred CC
Confidence 65
No 8
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.34 E-value=0.0004 Score=44.97 Aligned_cols=45 Identities=33% Similarity=0.749 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 024542 47 RWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (266)
Q Consensus 47 ~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (266)
.||..|...|+.+-... |. ..|..|+..+. .|++.||+.+|.+|.
T Consensus 1 ~Wt~eE~~~l~~~~~~~------g~------------~~w~~Ia~~~~----~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKY------GK------------NNWEKIAKELP----GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHH------Cc------------CCHHHHHhHcC----CCCHHHHHHHHHHhC
Confidence 49999999999985532 21 27999999986 399999999999873
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.13 E-value=0.00061 Score=63.20 Aligned_cols=50 Identities=30% Similarity=0.546 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
++..||..|=-.|+++.... | ...|..|+.++ |..|+++|||.||.|.+.
T Consensus 24 KRg~WT~EEDe~L~~lV~ky------G------------~~nW~~IAk~~---g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKE------G------------EGRWRSLPKRA---GLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHh------C------------cccHHHHHHhh---hcCCCcchHHHHHHHhhc
Confidence 45679999999998863321 1 22799999774 467999999999999764
No 10
>PLN03091 hypothetical protein; Provisional
Probab=96.80 E-value=0.0017 Score=64.55 Aligned_cols=52 Identities=29% Similarity=0.491 Sum_probs=39.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (266)
.+.|+..||..|=..|+++... + | ...|..|+..+ |..|+++|||+||.|.+
T Consensus 10 qklrKg~WTpEEDe~L~~~V~k----y--G------------~~nWs~IAk~~---g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITK----Y--G------------HGCWSSVPKQA---GLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHH----h--C------------cCCHHHHhhhh---ccCcCcchHhHHHHhcc
Confidence 4456778999999999887431 1 2 12799999764 56899999999999844
No 11
>smart00595 MADF subfamily of SANT domain.
Probab=96.16 E-value=0.01 Score=44.88 Aligned_cols=38 Identities=18% Similarity=0.496 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhhc
Q 024542 83 EPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESH 125 (266)
Q Consensus 83 ~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdwEr~ 125 (266)
...|..|+..|.. +..+|+.||.||...|.+...-...
T Consensus 27 ~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r~~~ 64 (89)
T smart00595 27 RKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKRLQN 64 (89)
T ss_pred HHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5599999999975 9999999999999999887655443
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.07 E-value=0.013 Score=54.51 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=42.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDF 116 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dY 116 (266)
+.-....||.+|-..||+..... | .+|..|+.+|- .|+.+||+.+|.++++..
T Consensus 74 P~I~kgpWT~EED~lLlel~~~~------G-------------nKWs~IAk~Lp----GRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 74 PSVKRGGITSDEEDLILRLHRLL------G-------------NRWSLIAGRIP----GRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred hhcccCCCChHHHHHHHHHHHhc------c-------------ccHHHHHhhcC----CCCHHHHHHHHHHHHhHH
Confidence 34566899999999998763321 2 28999999994 699999999999998754
No 13
>PLN03091 hypothetical protein; Provisional
Probab=95.92 E-value=0.019 Score=57.37 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKK 118 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKk 118 (266)
-.+..||.+|-..||+..+.. | .+|..|+.+|. .|+.+||+.+|..+++.|.+
T Consensus 65 IkKgpWT~EED~lLLeL~k~~------G-------------nKWskIAk~LP----GRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 65 LKRGTFSQQEENLIIELHAVL------G-------------NRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHHh------C-------------cchHHHHHhcC----CCCHHHHHHHHHHHHHHHHH
Confidence 346789999999999885432 2 28999999984 79999999999999986544
No 14
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=95.08 E-value=0.036 Score=40.67 Aligned_cols=39 Identities=23% Similarity=0.515 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024542 83 EPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (266)
Q Consensus 83 ~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdwEr 124 (266)
...|..|+..| |..-+..+|+.+|.+|...|.+.+.-..
T Consensus 26 ~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~~ 64 (85)
T PF10545_consen 26 EEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKIK 64 (85)
T ss_pred HHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56999999999 4345689999999999999999988886
No 15
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.51 E-value=0.14 Score=46.33 Aligned_cols=54 Identities=30% Similarity=0.521 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN-LAGDFK 117 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN-Ll~dYK 117 (266)
.+++.||..|=..||+..+.. |. -.|..|+..+ |..|.+++||-+|-| |--+.|
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~------G~------------~~W~~i~k~~---gl~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSF------GK------------HNGTALPKLA---GLRRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHh------CC------------CCcchhhhhc---CCCccchHHHHHhhcccCCCcc
Confidence 346999999999999984422 21 1799998765 558999999999999 555554
No 16
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=91.60 E-value=0.25 Score=50.29 Aligned_cols=49 Identities=24% Similarity=0.490 Sum_probs=39.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNL 112 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNL 112 (266)
...-.++||.+|||.|+++.- +| .+.|..|++++. .|+..||-.|.=.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie----~y---------------~ddW~kVa~hVg----~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIE----MY---------------GDDWNKVADHVG----TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHH----Hh---------------cccHHHHHhccC----CCCHHHHHHHHHhc
Confidence 345678999999999999732 11 348999999998 89999999888665
No 17
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=86.38 E-value=1.4 Score=45.84 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHH-HhhcccC---------CCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENR-VRRGRAA---------GMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNL 112 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r-~~~g~r~---------~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNL 112 (266)
.....||.+|.--||..-.++-.. ++.-.++ .+.+.+. =-|-.|++.+. .|+..|||-||..|
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~---I~Wt~vse~~~----TR~~~qCr~Kw~kl 506 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDD---INWTLVSEMLG----TRSRIQCRYKWYKL 506 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCC---cchhhhhHhhc----CCCcchHHHHHHHH
Confidence 466889999999999987655442 1110000 0111121 26999999555 89999999999999
Q ss_pred HHHHHHH
Q 024542 113 AGDFKKI 119 (266)
Q Consensus 113 l~dYKkI 119 (266)
+..+=.-
T Consensus 507 ~~~~s~n 513 (607)
T KOG0051|consen 507 TTSPSFN 513 (607)
T ss_pred HhhHHhh
Confidence 9876443
No 18
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=79.26 E-value=3.2 Score=42.31 Aligned_cols=57 Identities=23% Similarity=0.441 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWE 123 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdwE 123 (266)
+-.+|+++|++.|+++..+ | ++.|..||.+-. +++..||--|.=+|=..=|-+..-.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~----y---------------gDdW~kVA~HVg----tKt~EqCIl~FL~LPieD~~l~k~~ 334 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEM----Y---------------GDDWDKVARHVG----TKTKEQCILHFLQLPIEDNYLSKGD 334 (531)
T ss_pred ccccccHHHHHHHHHHHHH----h---------------hhhHHHHHHHhC----CCCHHHHHHHHHcCCcchhhhhccc
Confidence 6679999999999998542 2 338999999876 8999999999988765544444433
No 19
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=69.90 E-value=9.5 Score=38.47 Aligned_cols=75 Identities=12% Similarity=0.295 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhh
Q 024542 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWES 124 (266)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdwEr 124 (266)
.+.||..|-+.||++-. .+.-| -|+.||+++- .|+..+|++-..|..-
T Consensus 72 ~~~WtadEEilLLea~~----t~G~G--------------NW~dIA~hIG----tKtkeeck~hy~k~fv---------- 119 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAE----TYGFG--------------NWQDIADHIG----TKTKEECKEHYLKHFV---------- 119 (438)
T ss_pred CCCCChHHHHHHHHHHH----HhCCC--------------cHHHHHHHHc----ccchHHHHHHHHHHHh----------
Confidence 48999999999999822 22112 5999999997 8999999987655332
Q ss_pred ccCCCCCCcccCCHHHHHhcCCCCCCcHHHHHHHHhh
Q 024542 125 HVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGA 161 (266)
Q Consensus 125 ~~~~~~~SYW~ms~~eRke~~LP~~Fd~EvfdaLd~~ 161 (266)
.+ -++.+. ...++..-++..+-+|..-
T Consensus 120 ----~s-~~~~~~-----~i~~~~~~~q~e~~~~~k~ 146 (438)
T KOG0457|consen 120 ----NS-PIFPLP-----DISLGIGVNQDEDAAMAKN 146 (438)
T ss_pred ----cC-cccccc-----ccccccCcchHHHhhhccc
Confidence 12 233333 2455566677777777665
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=63.05 E-value=12 Score=39.30 Aligned_cols=48 Identities=25% Similarity=0.513 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
-++.||..|.-.|-..=. ..| ..|..|...|- |.|.-|+++|.+.+.-
T Consensus 383 ~rg~wt~ee~eeL~~l~~------~~g-------------~~W~~Ig~~lg-----r~P~~crd~wr~~~~~ 430 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVV------EHG-------------NDWKEIGKALG-----RMPMDCRDRWRQYVKC 430 (607)
T ss_pred ccCCCCcchHHHHHHHHH------Hhc-------------ccHHHHHHHHc-----cCcHHHHHHHHHhhcc
Confidence 457899988877654411 112 27999999986 9999999999998763
No 21
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=59.98 E-value=25 Score=31.86 Aligned_cols=50 Identities=12% Similarity=0.317 Sum_probs=38.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (266)
+.-.++.||.+|..+||++-+.+ | .+|..||.+|- -|+-+..+--|..-+
T Consensus 58 P~ikrg~fT~eEe~~Ii~lH~~~------G-------------NrWs~IA~~LP----GRTDNeIKN~Wnt~l 107 (238)
T KOG0048|consen 58 PDLKRGNFSDEEEDLIIKLHALL------G-------------NRWSLIAGRLP----GRTDNEVKNHWNTHL 107 (238)
T ss_pred CCccCCCCCHHHHHHHHHHHHHH------C-------------cHHHHHHhhCC----CcCHHHHHHHHHHHH
Confidence 45567899999999999983322 3 28999999997 688888877775543
No 22
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=59.14 E-value=13 Score=39.69 Aligned_cols=63 Identities=32% Similarity=0.596 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK 120 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIr 120 (266)
+.-..+.||.+|-+.|+.+-. ++ | +..|--|.+..= +||-.|||++.-|.+..-.|+-
T Consensus 356 Psikhg~wt~~ED~~L~~AV~----~Y--g------------~kdw~k~R~~vP----nRSdsQcR~RY~nvL~~s~K~~ 413 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVS----RY--G------------AKDWAKVRQAVP----NRSDSQCRERYTNVLNRSAKVE 413 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHH----Hh--C------------ccchhhHHHhcC----CccHHHHHHHHHHHHHHhhccC
Confidence 344578999999999999833 22 1 125665544322 8999999999999999988888
Q ss_pred hhhhc
Q 024542 121 EWESH 125 (266)
Q Consensus 121 dwEr~ 125 (266)
.|.-+
T Consensus 414 rW~l~ 418 (939)
T KOG0049|consen 414 RWTLV 418 (939)
T ss_pred ceeec
Confidence 88754
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=57.83 E-value=24 Score=25.79 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchH---HHHHHHHHhcCCCC-CHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKW---ASVSSYCKRHGVNR-GPVQCRKR 108 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kW---e~Vs~~c~~~Gv~R-s~~QCr~K 108 (266)
..-.||..|...++++.... |+ ..| +.|++.|. +.| +..||+..
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~------G~------------g~~a~pk~I~~~~~---~~~lT~~qV~SH 49 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKL------GG------------PDWATPKRILELMV---VDGLTRDQVASH 49 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHh------CC------------CcccchHHHHHHcC---CCCCCHHHHHHH
Confidence 34579999999999986543 21 158 88888776 456 88999864
No 24
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=50.77 E-value=38 Score=36.45 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=38.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
++-++-.|+..|.-.|.++-. . .+ ..-|..|+..+ |-+||.-||-.|...-++
T Consensus 249 P~~nk~~WS~EE~E~L~AiA~--------A--~~--------~~~W~~IA~~L---gt~RS~yQC~~kF~t~~~ 301 (939)
T KOG0049|consen 249 PKWNKEHWSNEEVEKLKALAE--------A--PK--------FVSWPMIALNL---GTNRSSYQCMEKFKTEVS 301 (939)
T ss_pred CccchhccChHHHHHHHHHHh--------c--cc--------cccHHHHHHHh---CCCcchHHHHHHHHHHHH
Confidence 667888999998877776511 1 11 23799999865 678999999887765443
No 25
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=49.45 E-value=8.2 Score=29.91 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=18.2
Q ss_pred hcCCCCCHHHHHHHHHHHHH
Q 024542 95 RHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 95 ~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
..||+|+...|+.|+.|+++
T Consensus 50 ~~GCDkt~~tC~~kF~N~~N 69 (80)
T PF09356_consen 50 YPGCDKTFATCRAKFNNALN 69 (80)
T ss_pred EeCCCCCHHHHHHHhCCccc
Confidence 48999999999999999876
No 26
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=44.48 E-value=23 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 024542 105 CRKRWSNLAGDFKKIKEWESHV 126 (266)
Q Consensus 105 Cr~KWeNLl~dYKkIrdwEr~~ 126 (266)
..+-|++....+|.|||+.++.
T Consensus 5 ~~d~f~eFY~rlk~Ike~Hrr~ 26 (28)
T PF12108_consen 5 GGDPFSEFYERLKEIKEYHRRY 26 (28)
T ss_dssp S--HHHHHHHHHHHHHHHHHS-
T ss_pred CCChHHHHHHHHHHHHHHHHhC
Confidence 4567999999999999999875
No 27
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=44.47 E-value=39 Score=35.29 Aligned_cols=58 Identities=24% Similarity=0.514 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhhhc
Q 024542 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESH 125 (266)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdwEr~ 125 (266)
+-|+..|--+|=.+- . .-| .+.|..|+..+. ..++.||+-+|+.-+.---+.-+|.+.
T Consensus 8 gvwrntEdeilkaav-----~-kyg------------~nqws~i~sll~----~kt~rqC~~rw~e~ldp~i~~tews~e 65 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAV-----M-KYG------------KNQWSRIASLLN----RKTARQCKARWEEWLDPAIKKTEWSRE 65 (617)
T ss_pred ceecccHHHHHHHHH-----H-Hcc------------hHHHHHHHHHHh----hcchhHHHHHHHHHhCHHHhhhhhhhh
Confidence 458877777765441 1 112 448999999998 468999999999888876777777765
No 28
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=42.25 E-value=26 Score=36.09 Aligned_cols=55 Identities=24% Similarity=0.477 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKK 118 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKk 118 (266)
+.....+|+..|--.||.+-.++ ..+|..|+.++=+ |++.||-.+|-+++.+|-+
T Consensus 68 p~lk~~~~~~eed~~li~l~~~~-------------------~~~wstia~~~d~----rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 68 PQLKKKNWSEEEDEQLIDLDKEL-------------------GTQWSTIADYKDR----RTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhcccccccHHHHHHHHHHHHhc-------------------CchhhhhccccCc----cchHHHHHHHHHHhhhhhc
Confidence 34556789999998888873322 2379999998763 9999999999999999888
No 29
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=40.48 E-value=73 Score=28.44 Aligned_cols=58 Identities=24% Similarity=0.465 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN-LAGDFK 117 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN-Ll~dYK 117 (266)
.|.--||..+=+.|-+. .++ ....|.. | -.--+.|..+|. |++.+|..+|.. |.+.|.
T Consensus 3 ~rqdawt~e~d~llae~--vl~-~i~eg~t--------q-l~afe~~g~~L~-----rt~aac~fRwNs~vrk~Ye 61 (170)
T PRK13923 3 TRQDAWTQERDGLLAEV--VLR-HIREGGT--------Q-LKAFEEVGDALK-----RTAAACGFRWNSVVRKQYQ 61 (170)
T ss_pred chhhhhhhHHHHHHHHH--HHH-HHhccch--------H-HHHHHHHHHHHh-----hhHHHHHhHHHHHHHHHHH
Confidence 45667999998888443 222 2222221 1 224566677775 999999999965 444453
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.85 E-value=73 Score=28.30 Aligned_cols=59 Identities=24% Similarity=0.478 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-HHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG-DFKK 118 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~-dYKk 118 (266)
.|.--||..|=+.|-+. +...+..|. .| -.-.++|.+.+. |++--|.=+|...+. .|+.
T Consensus 2 ~RQDAWT~eeDlLLAEt---VLrhIReG~--------TQ-L~AFeEvg~~L~-----RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAET---VLRHIREGS--------TQ-LSAFEEVGRALN-----RTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred ccccccccHHHHHHHHH---HHHHHhcch--------HH-HHHHHHHHHHHc-----ccHHHhcchHHHHHHHHHHH
Confidence 35567999999999876 323333332 12 336788888885 999999999999655 4544
No 31
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=26.33 E-value=92 Score=32.65 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 024542 83 EPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEW 122 (266)
Q Consensus 83 ~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdw 122 (266)
.+-|.-|++.|- |++.||-.+..||+-.|-....+
T Consensus 78 p~qwrtIa~i~g-----r~~~qc~eRy~~ll~~~~s~~~~ 112 (617)
T KOG0050|consen 78 PTQWRTIADIMG-----RTSQQCLERYNNLLDVYVSYHYH 112 (617)
T ss_pred CCccchHHHHhh-----hhHHHHHHHHHHHHHHHHhhhcc
Confidence 347999999987 99999999999999998776665
No 32
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=20.00 E-value=1.5e+02 Score=29.46 Aligned_cols=44 Identities=23% Similarity=0.583 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 024542 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN 111 (266)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN 111 (266)
++|+..|-|.||+.-. .+ | ++ -|+-|++|.- .|....|++..=.
T Consensus 64 e~WgadEEllli~~~~----Tl--G------lG------NW~dIadyiG----sr~kee~k~HylK 107 (432)
T COG5114 64 EGWGADEELLLIECLD----TL--G------LG------NWEDIADYIG----SRAKEEIKSHYLK 107 (432)
T ss_pred CCcCchHHHHHHHHHH----hc--C------CC------cHHHHHHHHh----hhhhHHHHHHHHH
Confidence 7999999999998721 11 1 11 6999999987 7889999986543
Done!