Query 024542
Match_columns 266
No_of_seqs 129 out of 157
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:05:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 4.7E-22 1.6E-26 151.9 7.9 84 42-134 1-84 (86)
2 3sjm_A Telomeric repeat-bindin 98.5 2.5E-07 8.4E-12 67.6 5.7 53 42-114 8-60 (64)
3 1ity_A TRF1; helix-turn-helix, 98.3 1.3E-06 4.4E-11 63.8 6.6 55 40-115 5-60 (69)
4 1w0t_A Telomeric repeat bindin 98.3 1.1E-06 3.9E-11 61.0 6.0 49 45-114 2-51 (53)
5 2d9a_A B-MYB, MYB-related prot 98.2 1.6E-06 5.4E-11 61.5 5.3 52 41-114 4-55 (60)
6 1x41_A Transcriptional adaptor 98.2 3.7E-06 1.3E-10 60.0 6.3 51 42-114 5-55 (60)
7 1guu_A C-MYB, MYB proto-oncoge 98.2 2.2E-06 7.5E-11 59.1 4.9 49 44-114 2-50 (52)
8 2dim_A Cell division cycle 5-l 98.1 3E-06 1E-10 61.9 5.3 53 40-114 4-56 (70)
9 2din_A Cell division cycle 5-l 98.1 7.7E-06 2.6E-10 59.1 7.0 52 43-118 7-58 (66)
10 2elk_A SPCC24B10.08C protein; 98.1 9E-06 3.1E-10 57.8 7.1 48 45-113 9-56 (58)
11 1gvd_A MYB proto-oncogene prot 98.1 3E-06 1E-10 58.5 4.1 49 44-114 2-50 (52)
12 2yum_A ZZZ3 protein, zinc fing 98.0 1E-05 3.6E-10 59.6 6.4 58 41-115 4-61 (75)
13 2roh_A RTBP1, telomere binding 98.0 2.6E-05 8.8E-10 64.0 8.8 62 36-115 22-83 (122)
14 2cu7_A KIAA1915 protein; nucle 98.0 2E-05 6.9E-10 58.0 7.1 52 41-115 5-56 (72)
15 2yus_A SWI/SNF-related matrix- 97.9 1.7E-05 5.9E-10 60.1 5.6 49 41-112 14-62 (79)
16 2juh_A Telomere binding protei 97.9 3.9E-05 1.3E-09 62.9 7.8 59 39-115 11-69 (121)
17 2cjj_A Radialis; plant develop 97.9 2.9E-05 9.8E-10 60.8 6.5 60 45-123 8-67 (93)
18 2cqr_A RSGI RUH-043, DNAJ homo 97.8 2.1E-05 7.1E-10 59.1 4.5 53 44-115 17-69 (73)
19 2aje_A Telomere repeat-binding 97.7 4.1E-05 1.4E-09 61.3 5.6 83 38-156 6-88 (105)
20 2cqq_A RSGI RUH-037, DNAJ homo 97.7 8.9E-05 3.1E-09 55.4 6.9 52 44-115 7-58 (72)
21 2llk_A Cyclin-D-binding MYB-li 97.7 8E-05 2.7E-09 55.9 6.5 50 41-114 19-68 (73)
22 2ckx_A NGTRF1, telomere bindin 97.6 0.00012 4.1E-09 56.1 6.8 51 47-115 2-52 (83)
23 3osg_A MYB21; transcription-DN 97.5 0.00013 4.4E-09 58.7 5.6 51 41-114 7-57 (126)
24 2k9n_A MYB24; R2R3 domain, DNA 97.4 0.00031 1.1E-08 54.9 7.0 50 43-115 51-100 (107)
25 2k9n_A MYB24; R2R3 domain, DNA 97.4 0.00015 5E-09 56.7 4.9 47 46-114 2-48 (107)
26 3osg_A MYB21; transcription-DN 97.4 0.00023 7.9E-09 57.2 5.8 50 43-115 60-109 (126)
27 1gv2_A C-MYB, MYB proto-oncoge 97.4 0.00015 5E-09 56.1 4.1 49 44-114 3-51 (105)
28 1gv2_A C-MYB, MYB proto-oncoge 97.3 0.00029 9.8E-09 54.5 5.0 50 43-115 54-103 (105)
29 2ltp_A Nuclear receptor corepr 96.3 5.3E-05 1.8E-09 58.2 0.0 54 40-116 11-64 (89)
30 1h8a_C AMV V-MYB, MYB transfor 97.2 0.00039 1.3E-08 55.7 4.7 50 43-114 25-74 (128)
31 3zqc_A MYB3; transcription-DNA 96.9 0.00067 2.3E-08 54.7 4.1 50 43-115 52-101 (131)
32 1h8a_C AMV V-MYB, MYB transfor 96.9 0.00075 2.5E-08 54.0 4.2 49 43-114 77-125 (128)
33 3zqc_A MYB3; transcription-DNA 96.8 0.00029 1E-08 56.8 1.4 48 45-114 2-49 (131)
34 1h89_C C-MYB, MYB proto-oncoge 96.7 0.0016 5.5E-08 53.8 4.7 50 43-114 56-105 (159)
35 1h89_C C-MYB, MYB proto-oncoge 96.4 0.0028 9.7E-08 52.3 4.3 49 43-114 108-156 (159)
36 1wgx_A KIAA1903 protein; MYB D 96.1 0.0041 1.4E-07 46.8 3.5 52 45-115 8-59 (73)
37 2eqr_A N-COR1, N-COR, nuclear 96.0 0.02 7E-07 40.7 6.5 50 39-111 6-55 (61)
38 1ign_A Protein (RAP1); RAP1,ye 95.4 0.0079 2.7E-07 54.6 3.0 55 43-115 6-61 (246)
39 1x58_A Hypothetical protein 49 95.3 0.058 2E-06 39.5 6.8 51 44-114 7-57 (62)
40 2iw5_B Protein corest, REST co 93.8 0.094 3.2E-06 47.3 5.9 46 43-111 131-176 (235)
41 3hm5_A DNA methyltransferase 1 91.1 0.5 1.7E-05 36.9 6.2 56 46-120 31-87 (93)
42 2xag_B REST corepressor 1; ami 91.0 0.36 1.2E-05 47.4 6.6 45 43-110 378-422 (482)
43 1ug2_A 2610100B20RIK gene prod 86.0 7.2 0.00025 30.7 9.6 63 38-120 26-88 (95)
44 4iej_A DNA methyltransferase 1 76.3 4.8 0.00016 31.5 5.4 57 46-121 31-88 (93)
45 1fex_A TRF2-interacting telome 66.7 5.6 0.00019 28.1 3.5 53 46-112 3-56 (59)
46 2yqk_A Arginine-glutamic acid 57.0 31 0.0011 24.2 6.1 45 40-107 4-49 (63)
47 2lr8_A CAsp8-associated protei 54.5 3.6 0.00012 30.8 0.0 56 44-120 13-68 (70)
48 4eef_G F-HB80.4, designed hema 47.7 1.1 3.7E-05 33.9 -3.1 45 45-108 20-64 (74)
49 4a69_C Nuclear receptor corepr 34.7 39 0.0013 25.7 3.9 42 43-107 41-82 (94)
50 2dt7_A Splicing factor 3A subu 32.7 30 0.001 22.6 2.5 21 108-128 11-31 (38)
51 4b4c_A Chromodomain-helicase-D 29.2 1E+02 0.0034 25.6 5.9 67 41-125 3-70 (211)
52 2crg_A Metastasis associated p 27.4 1.1E+02 0.0039 21.7 5.1 43 42-107 5-48 (70)
53 2c9l_Y EB1, zebra, BZLF1 trans 26.2 38 0.0013 24.3 2.3 22 103-124 14-35 (63)
54 2kwv_A RAD30 homolog B, DNA po 22.9 8.8 0.0003 26.7 -1.5 15 144-158 10-24 (48)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.86 E-value=4.7e-22 Score=151.85 Aligned_cols=84 Identities=25% Similarity=0.495 Sum_probs=73.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Q 024542 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKE 121 (266)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrd 121 (266)
++|.++||.+||++||+++++++.+|..+++ ...+|++||+.|+.+||+||+.||+.||+||.+.||+|++
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~---------~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKS---------NKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSC---------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcccc---------chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999876531 2679999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCcc
Q 024542 122 WESHVKDGTESFW 134 (266)
Q Consensus 122 wEr~~~~~~~SYW 134 (266)
+++.++.+.=+||
T Consensus 72 ~~~~sG~~~~~yf 84 (86)
T 2ebi_A 72 HDRGNGSAKMSYY 84 (86)
T ss_dssp CCCCCCCCCCCCC
T ss_pred hcccCCCCCCCCC
Confidence 9987533334455
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.45 E-value=2.5e-07 Score=67.61 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
..+...||..|-..|+++-... |. ..|..|+.++-- -.|++.||++||.||++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~------G~------------~~W~~Ia~~~~~--~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKY------GE------------GNWAAISKNYPF--VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHH------CT------------TCHHHHHHHSCC--SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHcc------CC------------CchHHHHhhcCC--CCCCHHHHHHHHHHHhc
Confidence 3455689999999999984422 21 179999987521 15999999999999975
No 3
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.31 E-value=1.3e-06 Score=63.84 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=43.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHH
Q 024542 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGV-NRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv-~Rs~~QCr~KWeNLl~d 115 (266)
.++.+...||..|-..|+++.... |. .+|..|+.+|. + .|+++||+.+|.|++.-
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~------G~------------~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKY------GE------------GNWSKILLHYK---FNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHH------CS------------SCHHHHHHHSC---CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH------CC------------CcHHHHHHHcC---cCCCCHHHHHHHHHHHcCC
Confidence 345667889999999999984422 21 18999999984 4 79999999999999863
No 4
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.31 E-value=1.1e-06 Score=61.04 Aligned_cols=49 Identities=29% Similarity=0.475 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH
Q 024542 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGV-NRGPVQCRKRWSNLAG 114 (266)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv-~Rs~~QCr~KWeNLl~ 114 (266)
...||..|-..|+++.... | ...|..|+.++. + .|++.||+++|.||++
T Consensus 2 r~~WT~eEd~~L~~~v~~~------G------------~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKY------G------------EGNWSKILLHYK---FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHH------C------------TTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------C------------cCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence 4689999999999984422 2 128999999973 4 5999999999999975
No 5
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.22 E-value=1.6e-06 Score=61.53 Aligned_cols=52 Identities=27% Similarity=0.430 Sum_probs=41.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
+..+...||.+|-..|+++.... | ..+|..|+.+|- .|+..||+.+|.|++.
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~------G------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQF------G------------QQDWKFLASHFP----NRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHT------C------------TTCHHHHHHHCS----SSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh------C------------CCCHHHHHHHcc----CCCHHHHHHHHHHHcC
Confidence 44566799999999999985432 2 128999999984 5999999999999764
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.17 E-value=3.7e-06 Score=60.01 Aligned_cols=51 Identities=22% Similarity=0.424 Sum_probs=40.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
.-....||.+|-..||++.... | ..+|..|+.+|- .|++.||+.+|.|++.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~------G------------~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDC------G------------FGNWQDVANQMC----TKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHT------C------------TTCHHHHHHHHT----TSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------C------------cCcHHHHHHHhC----CCCHHHHHHHHHHHcc
Confidence 3456789999999999984321 2 128999999994 5999999999999764
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.16 E-value=2.2e-06 Score=59.07 Aligned_cols=49 Identities=33% Similarity=0.634 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
+...||.+|-..|+++.... |. ..|..|+.+|- .|++.||+.+|.|++.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~------G~------------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQN------GT------------DDWKVIANYLP----NRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHH------CS------------SCHHHHHHTST----TCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHh------CC------------CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 35789999999999985432 21 17999999984 6999999999999874
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=3e-06 Score=61.93 Aligned_cols=53 Identities=19% Similarity=0.411 Sum_probs=42.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
++..+...||..|-..|+++.... | ...|..|+.+|- .|+++||+.+|.|.+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~------G------------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKY------G------------KNQWSRIASLLH----RKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHT------C------------SSCHHHHHHHST----TCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH------C------------cCCHHHHHHHhc----CCCHHHHHHHHHHHcC
Confidence 345567899999999999884421 2 128999999986 7999999999999765
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=7.7e-06 Score=59.09 Aligned_cols=52 Identities=19% Similarity=0.439 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKK 118 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKk 118 (266)
.....||..|-..||++... -| .+|..||. +- | |+..||+.+|.+++..-.+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~------~g-------------~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKL------MP-------------TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHH------CT-------------TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH------cC-------------CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhc
Confidence 45568999999999998221 11 28999999 54 4 9999999999999986544
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.10 E-value=9e-06 Score=57.79 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 024542 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLA 113 (266)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl 113 (266)
...||.+|-..|+++.... | ...|..||.+|- ..|++.||+.+|.|+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~------G------------~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETL------G------------LGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT------T------------TTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------C------------cCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 4579999999999984321 2 128999999983 3699999999999864
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.08 E-value=3e-06 Score=58.47 Aligned_cols=49 Identities=31% Similarity=0.507 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
+...||.+|-..|+++.... |. ..|..|+.+|- .|+.+||+.+|.|.+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~------G~------------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKY------GP------------KRWSVIAKHLK----GRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHH------CT------------TCHHHHHTTST----TCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHH------Cc------------ChHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 45789999999999985432 21 16999999984 6999999999999763
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1e-05 Score=59.65 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=42.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
+......||..|-..|+++.... |... . ...+|..|+.+|- .|+..||+.+|.|++..
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~------g~~~-~------~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKY------PPEE-V------ESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHS------CCCS-C------HHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh------CCCC-C------CcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 44556789999999999984322 1100 0 0248999999995 69999999999887753
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.99 E-value=2.6e-05 Score=64.03 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 36 GDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 36 g~~~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
....+++.....||..|...|++.-... |. -+|..|+......=-.|+.+||++||.||++.
T Consensus 22 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~------G~------------g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 22 RPDFGQRRIRRPFTVAEVELLVEAVEHL------GT------------GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHHHHH------SS------------SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHHHH------CC------------CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3445566677899999999999984432 21 18999999764311379999999999999863
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.97 E-value=2e-05 Score=57.95 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=42.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
+......||..|-..|+++-... | .+|..|+.+|- .|+..||+.+|.+++..
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~------G-------------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKF------G-------------RRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHT------C-------------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 34556789999999999984422 2 18999999885 69999999999999875
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.89 E-value=1.7e-05 Score=60.10 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=39.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNL 112 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNL 112 (266)
.......||.+|.+.|+++.... | ..|..|+.++- .|+..||+.+|.+|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~------G-------------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMY------K-------------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHS------S-------------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 33446799999999999984321 1 17999999985 69999999999987
No 16
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.87 E-value=3.9e-05 Score=62.92 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 39 GCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 39 ~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
..++.....||..|...||++-... |. -+|..|+..+...--.|+.+||++||.||+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~------G~------------G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHL------GT------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHH------GG------------GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHH------CC------------CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4456677799999999999985432 21 18999999875422379999999999999974
No 17
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.85 E-value=2.9e-05 Score=60.83 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhhh
Q 024542 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWE 123 (266)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIrdwE 123 (266)
...||..|-..|+++-... ..+ . ..+|..||.++- .|+.+||+.+|.+|+.+-+.|....
T Consensus 8 ~~~WT~eEd~~L~~al~~~----~~~--------~---~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~iesg~ 67 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVY----DKD--------T---PDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIESGK 67 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHS----CTT--------C---TTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHc----CCC--------C---CchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhcCC
Confidence 4579999999999985422 111 0 249999999995 4999999999999999988875443
No 18
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.78 E-value=2.1e-05 Score=59.06 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
....||..|-..|+++.... |. . ...+|..||.++- .|+.+||+.+|.+|+.|
T Consensus 17 ~~~~WT~eEd~~L~~al~~~------g~--~-------~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQY------PR--G-------SSDCWDKIARCVP----SKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHS------CS--S-------SHHHHHHHGGGCS----SSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHc------CC--C-------CCchHHHHHHHcC----CCCHHHHHHHHHHHHHc
Confidence 44679999999999985432 11 0 1349999999985 59999999999999875
No 19
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.72 E-value=4.1e-05 Score=61.28 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 024542 38 DGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFK 117 (266)
Q Consensus 38 ~~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYK 117 (266)
...++.+...||..|...|++.-... |. -+|..|+..+...=-.|+.+||++||.||++.-
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~------G~------------g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~- 66 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKL------GT------------GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA- 66 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHH------CS------------SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT-
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHh------CC------------CChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-
Confidence 34466777899999999999984422 21 189999985431113799999999999999731
Q ss_pred HHHhhhhccCCCCCCcccCCHHHHHhcCCCCCCcHHHHH
Q 024542 118 KIKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYD 156 (266)
Q Consensus 118 kIrdwEr~~~~~~~SYW~ms~~eRke~~LP~~Fd~Evfd 156 (266)
.+++..|+..-+|..|-..|-+
T Consensus 67 -----------------~~~p~~~rg~~~P~~~l~rv~~ 88 (105)
T 2aje_A 67 -----------------KISPQQRRGEPVPQELLNRVLN 88 (105)
T ss_dssp -----------------TCCTTTTTCCSCCCHHHHHHHH
T ss_pred -----------------cCCcccccCCCCCHHHHHHHHH
Confidence 1122234556778777666666
No 20
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.71 E-value=8.9e-05 Score=55.41 Aligned_cols=52 Identities=17% Similarity=0.402 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
....||..|-..|+++-.. |-.+ + ..+|+.|++++ | |+..||+.+|..|..+
T Consensus 7 ~~~~WT~eE~k~fe~al~~----~p~~--------t---~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVK----FPGG--------T---PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHH----SCTT--------C---TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHH----CCCC--------C---CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 3568999999999998542 2111 1 24999999998 4 9999999999999887
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.70 E-value=8e-05 Score=55.92 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=40.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
+.-....||.+|-..||++..+. | .+|..||.+| .|+.+||+.+|..|..
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~------G-------------~kW~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKH------G-------------NDWATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHH------S-------------SCHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------C-------------CCHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 34456789999999999985432 3 2799999998 4999999999998754
No 22
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.63 E-value=0.00012 Score=56.13 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 47 RWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 47 ~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
.||..|...||+.-... |. -+|..|+..-...=-.|+.+||++||.||++.
T Consensus 2 ~WT~eEd~~L~~gv~k~------G~------------g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL------GT------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHH------CS------------SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------CC------------CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 69999999999984432 21 18999998632111279999999999999873
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.49 E-value=0.00013 Score=58.66 Aligned_cols=51 Identities=29% Similarity=0.551 Sum_probs=41.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
+..+...||..|-..|+++.... | . .|..|+.+|- .|++.||+++|.|.+.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~------G------------~-~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQH------G------------S-DWKMIAATFP----NRNARQCRDRWKNYLA 57 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHH------T------------T-CHHHHHHTCT----TCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh------C------------C-CHHHHHHHcC----CCCHHHHHHHHhhhcc
Confidence 45567889999999999885432 2 1 7999999874 6999999999999763
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.44 E-value=0.00031 Score=54.86 Aligned_cols=50 Identities=34% Similarity=0.601 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
-....||..|-..||.+.... | .+|..|+.+|- .|+.+||+.+|.+|+..
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEY------G-------------PKWNKISKFLK----NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHT------C-------------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHh------C-------------cCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence 346789999999999984432 2 28999999984 69999999999999875
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.43 E-value=0.00015 Score=56.73 Aligned_cols=47 Identities=34% Similarity=0.569 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
..||..|-..|+++.... |. ..|..|+.+|- .|++.||+++|.|.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~------g~------------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY------GA------------KDWIRISQLMI----TRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH------CS------------SCHHHHHHHTT----TSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHH------CC------------CCHHHHhhhcC----CCCHHHHHHHHHHHHc
Confidence 579999999999985422 21 17999999985 6999999999999764
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.39 E-value=0.00023 Score=57.19 Aligned_cols=50 Identities=22% Similarity=0.533 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
.....||..|-..|+++..+. | .+|..|+.++- .|+..||+.+|.+|++.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEY------G-------------RQWAIIAKFFP----GRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 345689999999999985433 2 17999998764 69999999999999875
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.36 E-value=0.00015 Score=56.15 Aligned_cols=49 Identities=29% Similarity=0.492 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
+...||..|-..|+++.... |. ..|..|+.+|- .|++.||+.+|.|++.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~------g~------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKY------GP------------KRWSVIAKHLK----GRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------CT------------TCHHHHHTTST----TCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHh------CC------------CcHHHHhhhhc----CCCHHHHHHHHHhccC
Confidence 45789999999999884321 21 16999999884 6999999999999753
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.28 E-value=0.00029 Score=54.46 Aligned_cols=50 Identities=18% Similarity=0.452 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
-....||..|-..|+++.... | .+|..|+.+|- .|+.+||+.+|.+|++.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH------S-------------SCHHHHHTTCT----TCCHHHHHHHHHHHTC-
T ss_pred ccccCCCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 346789999999999985432 2 17999998763 69999999999998863
No 29
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.28 E-value=5.3e-05 Score=58.22 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=43.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 024542 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDF 116 (266)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dY 116 (266)
...-....||.+|-..||++.... | .+|..||.+|- .|+..||+.+|.|++..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~------G-------------~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEH------G-------------RNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 344456789999999999984422 2 27999999985 699999999999988764
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.15 E-value=0.00039 Score=55.69 Aligned_cols=50 Identities=28% Similarity=0.519 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
.....||..|-..|+++.... | ...|..|+.+|- .|++.||+.+|.|++.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~------g------------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKY------G------------PKRWSDIAKHLK----GRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHT------C------------SCCHHHHHHHSS----SCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHH------C------------CCCHHHHHHHhc----CCcHHHHHHHHHHhcc
Confidence 455789999999999874321 2 116999999984 6999999999999764
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.92 E-value=0.00067 Score=54.70 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
.....||..|-..|+++.... | .+|..|+.+|- .|+.+||+.+|.+++..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKL------G-------------SKWSVIAKLIP----GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHS------C-------------SCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred ccCCCCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 345689999999999874321 2 27999998774 69999999999998874
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.91 E-value=0.00075 Score=54.04 Aligned_cols=49 Identities=18% Similarity=0.470 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
-....||.+|-..|+++.... | .+|..|+.+|- .|+.+||+.+|.+|++
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccccCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 346789999999999985432 2 27999998763 6999999999999886
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.85 E-value=0.00029 Score=56.83 Aligned_cols=48 Identities=29% Similarity=0.548 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
++.||..|-..|+++.... | ...|..|+.+|- .|++.||+++|.|.+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~------g------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKEN------G------------PQNWPRITSFLP----NRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHH------C------------SCCGGGGTTSCT----TSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHh------C------------cCCHHHHHHHHC----CCCHHHHHHHHhhccC
Confidence 4679999999999874422 2 117999999884 6999999999999774
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.68 E-value=0.0016 Score=53.80 Aligned_cols=50 Identities=28% Similarity=0.467 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
.....||..|-..|+.+.... |. ..|..|+.+|- .|+..||+.+|.|++.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~------g~------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKY------GP------------KRWSVIAKHLK----GRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------CS------------CCHHHHHHTST----TCCHHHHHHHHHHTTC
T ss_pred cCCCCCChHHHHHHHHHHHHh------Cc------------ccHHHHHHHcC----CCCHHHHHHHHHHHhC
Confidence 456799999999999885422 21 16999999884 6999999999999763
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.37 E-value=0.0028 Score=52.30 Aligned_cols=49 Identities=18% Similarity=0.463 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
-....||..|-..|+++.... | .+|..|+.++- .|+.+||+.+|..|++
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~------g-------------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred ccccCCChHHHHHHHHHHHHH------C-------------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 456789999999999985432 2 28999998763 6999999999999875
No 36
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.10 E-value=0.0041 Score=46.81 Aligned_cols=52 Identities=15% Similarity=0.338 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
...||..|...|.++...... + . ..+|+.|++++- .|+..+|+++|..|...
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~----~--------t---p~rWe~IA~~V~----gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPK----H--------K---PGFWSEVAAAVG----SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCS----S--------S---SSHHHHHHHHTT----TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCC----C--------C---ccHHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 357999999999998543211 1 1 249999999885 49999999999988543
No 37
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.97 E-value=0.02 Score=40.70 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 024542 39 GCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN 111 (266)
Q Consensus 39 ~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN 111 (266)
...++....||.+|..+|+++.... |+ .|..|+.++- .|+..||...|-.
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~------gk-------------~w~~Ia~~l~----~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQH------PK-------------NFGLIASYLE----RKSVPDCVLYYYL 55 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHS------TT-------------CHHHHHHHCT----TSCHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHh------CC-------------CHHHHHHHcC----CCCHHHHHHHHHH
Confidence 3445778999999999999984432 21 7999998775 6999999988754
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.38 E-value=0.0079 Score=54.59 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhccc-CCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRA-AGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD 115 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r-~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~d 115 (266)
-....||..|-..||++-+.. |.+ .+ ...|..||.+|- .|+.+|||.+|.+++..
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~------Gn~r~g--------hk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKN------PTRRTT--------HTLYDEISHYVP----NHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTS------GGGTTC--------SHHHHHHTTTST----TSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHh------CcCccc--------cccHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence 345689999999999985543 221 11 225999999877 69999999999997753
No 39
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.28 E-value=0.058 Score=39.54 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAG 114 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~ 114 (266)
....||..|...|++.-+.. | . +|..|...-. .=-.|+...-++||.||++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~------G------------~-~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM------G------------N-HWNSILWSFP-FQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH------C------------S-CHHHHHHHSC-CCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH------h------------H-hHHHHHHhCC-CccCcccchHHHHHHHHHh
Confidence 45789999999999984432 3 2 8999996432 1227999999999999986
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=93.75 E-value=0.094 Score=47.30 Aligned_cols=46 Identities=30% Similarity=0.475 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSN 111 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeN 111 (266)
....+||.+|.+.|+++-+.. |+ .|..|+..+. .|+..||+.-|-|
T Consensus 131 k~s~~WTeEE~~lFleAl~kY------GK-------------DW~~IAk~Vg----TKT~~QcKnfY~~ 176 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKY------GR-------------DFQAISDVIG----NKSVVQVKNFFVN 176 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHH------SS-------------CHHHHHHHHS----SCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH------Cc-------------CHHHHHHHcC----CCCHHHHHHHHHH
Confidence 456799999999999984422 32 6999999975 7999999998853
No 41
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=91.09 E-value=0.5 Score=36.93 Aligned_cols=56 Identities=14% Similarity=0.361 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHH
Q 024542 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGV-NRGPVQCRKRWSNLAGDFKKIK 120 (266)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv-~Rs~~QCr~KWeNLl~dYKkIr 120 (266)
+.||..||.-|+++-+ +| ..+|-.|+++..-.+. .||..+-+.++-.|++...+.|
T Consensus 31 ~~WTkEETd~Lf~L~~----~f---------------dlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSR----RF---------------DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHH----HT---------------TTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH----Hh---------------CCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999833 22 3389999999865553 7999999999999999887776
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=90.99 E-value=0.36 Score=47.45 Aligned_cols=45 Identities=29% Similarity=0.465 Sum_probs=36.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWS 110 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWe 110 (266)
....+||.+|++.|+++.+. | |+ .|..|+..+. .|+..||+.-+.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~----y--Gk-------------dw~~IA~~Vg----TKT~~Qvk~fy~ 422 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRK----Y--GR-------------DFQAISDVIG----NKSVVQVKNFFV 422 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHH----H--TT-------------CHHHHHHHHS----SCCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHH----H--Cc-------------CHHHHHHHhC----CCCHHHHHHHHH
Confidence 45789999999999998542 2 32 6999999976 799999998554
No 43
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=85.96 E-value=7.2 Score=30.68 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 024542 38 DGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFK 117 (266)
Q Consensus 38 ~~~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYK 117 (266)
-+......--||+.|=.+++.+.++. |. ....|..|+..|. +|+++|-+.|..-|++=|.
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~------G~----------s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQEQ------GA----------QPHTFSVISQQLG----NKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHT------TS----------CTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEeccccCHHHHHHHHhc------CC----------ChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHH
Confidence 45566777899999988888774421 32 1348999999997 7999999999999999988
Q ss_pred HHH
Q 024542 118 KIK 120 (266)
Q Consensus 118 kIr 120 (266)
+-.
T Consensus 86 ~~~ 88 (95)
T 1ug2_A 86 TAC 88 (95)
T ss_dssp HCS
T ss_pred HHh
Confidence 743
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=76.27 E-value=4.8 Score=31.48 Aligned_cols=57 Identities=12% Similarity=0.305 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh
Q 024542 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHG-VNRGPVQCRKRWSNLAGDFKKIKE 121 (266)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~G-v~Rs~~QCr~KWeNLl~dYKkIrd 121 (266)
+.||..||.-|.++=+. | ..+|-.|.++-.-.+ ..|+..+-+.++-.+++..-++|.
T Consensus 31 ~~WT~eETd~LfdLc~~----f---------------dlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRR----F---------------DLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHH----T---------------TTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHH----c---------------CCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 68999999999998332 1 348999999865433 479999999999999998877764
No 45
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=66.66 E-value=5.6 Score=28.09 Aligned_cols=53 Identities=6% Similarity=0.093 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHH-HHHhcCCCCCHHHHHHHHHHH
Q 024542 46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSS-YCKRHGVNRGPVQCRKRWSNL 112 (266)
Q Consensus 46 p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~-~c~~~Gv~Rs~~QCr~KWeNL 112 (266)
-.+|.+|=.+||..-.+.... .+... ....|+.+++ .+ -.|+..+||++|-+=
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~--~~~~~--------Gn~iwk~la~~~~----~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARS--PSSVT--------GNALWKAMEKSSL----TQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCS--TTTTT--------SSHHHHHHHHSCS----SSCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccc--cCCCc--------cHHHHHHHHHhHC----CCCCHHHHHHHHHHH
Confidence 468999999999885544221 11111 1459999998 43 389999999999763
No 46
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.00 E-value=31 Score=24.23 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHH-HHhcCCCCCHHHHHH
Q 024542 40 CKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSY-CKRHGVNRGPVQCRK 107 (266)
Q Consensus 40 ~r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~-c~~~Gv~Rs~~QCr~ 107 (266)
.++.....||.+|...+.++-... |+ .|..|+.. +. .|+..||-.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~y------GK-------------df~~I~~~~v~----~Kt~~~~v~ 49 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQY------GK-------------NFFRIRKELLP----NKETGELIT 49 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHT------CS-------------CHHHHHHHSCT----TSCHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHh------Cc-------------cHHHHHHHHcC----CCcHHHHHH
Confidence 344456899999999988873321 22 58899875 33 699999954
No 47
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=54.55 E-value=3.6 Score=30.76 Aligned_cols=56 Identities=25% Similarity=0.391 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 024542 44 RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK 120 (266)
Q Consensus 44 R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkIr 120 (266)
..--||+.|=.+++..-++ +|. ....|..||..+ +|+++|-..+...|+.=|++-+
T Consensus 13 ~vvlWTReeDR~IL~~cq~------~G~----------s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQK------RGP----------SSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3456898887777665221 121 134899999877 4999999999999999998754
No 48
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=47.67 E-value=1.1 Score=33.93 Aligned_cols=45 Identities=20% Similarity=0.436 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHH
Q 024542 45 LPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKR 108 (266)
Q Consensus 45 ~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~K 108 (266)
...||..|-.+|-++.+.- -.+ + ..+|+.|++.+- .|+..+|++.
T Consensus 20 s~~WT~eE~K~FE~ALa~y----p~~--------t---pdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFT----NKD--------T---PDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTSSS----CSS--------C---CSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHC----CCC--------C---CcHHHHHHHHcC----CCCHHHHHHH
Confidence 4579999999998873321 111 1 349999998875 4999999754
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=34.72 E-value=39 Score=25.66 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHH
Q 024542 43 PRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRK 107 (266)
Q Consensus 43 ~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~ 107 (266)
+..-.||.+|.-.+.++.... |+ .|-.|++++. .|+..||-.
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~------gK-------------~F~~Ia~~l~----~Kt~~~cV~ 82 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQH------PK-------------NFGLIASFLE----RKTVAECVL 82 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHS------TT-------------CHHHHHHTCT----TCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHc------CC-------------CHHHHHHHcC----CCCHHHHHH
Confidence 456889999999888873321 22 6999987764 799999963
No 50
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.70 E-value=30 Score=22.61 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhhccCC
Q 024542 108 RWSNLAGDFKKIKEWESHVKD 128 (266)
Q Consensus 108 KWeNLl~dYKkIrdwEr~~~~ 128 (266)
-|++.....|.||++.++.++
T Consensus 11 ~f~~FY~rlk~Ike~Hrr~P~ 31 (38)
T 2dt7_A 11 EFAEFYNRLKQIKEFHRKHPN 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 599999999999999998753
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=29.19 E-value=1e+02 Score=25.62 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=40.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-H
Q 024542 41 KAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKK-I 119 (266)
Q Consensus 41 r~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKk-I 119 (266)
++.....||..|+..||.+-. +| | .. ..+|+.|.....=. .++...-++=-+.++..+.+ +
T Consensus 3 p~~~~~~~t~~E~r~fira~~----kf--G--------~~--~~r~~~I~~da~L~--~Ks~~~v~~y~~~f~~~c~~~~ 64 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYK----KF--G--------GP--LERLDAIARDAELV--DKSETDLRRLGELVHNGCIKAL 64 (211)
T ss_dssp -----CCSCHHHHHHHHHHHT----TC--S--------SG--GGCHHHHHHHTTCT--TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHH----HH--C--------Cc--hhHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999722 22 2 11 34899998864322 57888888877777777755 6
Q ss_pred Hhhhhc
Q 024542 120 KEWESH 125 (266)
Q Consensus 120 rdwEr~ 125 (266)
+++++.
T Consensus 65 ~~~~~~ 70 (211)
T 4b4c_A 65 KDSSSG 70 (211)
T ss_dssp C-----
T ss_pred HHHhhh
Confidence 666543
No 52
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=27.40 E-value=1.1e+02 Score=21.73 Aligned_cols=43 Identities=7% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHhhcccCCCCCCCCCCcchHHHHHHH-HHhcCCCCCHHHHHH
Q 024542 42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSY-CKRHGVNRGPVQCRK 107 (266)
Q Consensus 42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~r~~~~~~s~q~~~kWe~Vs~~-c~~~Gv~Rs~~QCr~ 107 (266)
++....||.+|...+.++-... |+ .|..|+.. +. .|+..||-.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~y------GK-------------df~~I~~~~v~----~Kt~~~~v~ 48 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKY------GK-------------DFNDIRQDFLP----WKSLTSIIE 48 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHT------CS-------------CHHHHHHTTCS----SSCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHh------Cc-------------cHHHHHHHHcC----CCCHHHHHH
Confidence 4678899999998888763311 21 58889873 33 699999975
No 53
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=26.25 E-value=38 Score=24.34 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 024542 103 VQCRKRWSNLAGDFKKIKEWES 124 (266)
Q Consensus 103 ~QCr~KWeNLl~dYKkIrdwEr 124 (266)
-.||-|+.||+..|+.|-.-..
T Consensus 14 rk~rakfkn~lqh~r~vaaaks 35 (63)
T 2c9l_Y 14 RKSRAKFKQLLQHYREVAAAKS 35 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4699999999999999876553
No 54
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.86 E-value=8.8 Score=26.71 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=13.2
Q ss_pred cCCCCCCcHHHHHHH
Q 024542 144 RKLPGFFDREVYDIL 158 (266)
Q Consensus 144 ~~LP~~Fd~EvfdaL 158 (266)
..||.+.|.|||.+|
T Consensus 10 ~~lP~~VD~eVF~~L 24 (48)
T 2kwv_A 10 QALPEGVDQEVFKQL 24 (48)
T ss_dssp TSSCTTCCGGGTTTS
T ss_pred ccCCCCCCHHHHHHC
Confidence 589999999999765
Done!