BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024543
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 218 DGWTEIEMGDFFNENGDDGTVVCRLC---EPGSVQK 250
+G T +GD F + DG ++C L +PGSVQK
Sbjct: 13 EGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQK 48
>pdb|1UEK|A Chain A, Crystal Structure Of 4-(Cytidine
5'-Diphospho)-2c-Methyl-D- Erythritol Kinase
Length = 275
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 114 SIAWGDSPQYWNWLSLREFR-FPEVVKLR 141
++A G+ P YWN L FR FPE+ ++R
Sbjct: 189 ALARGEEPPYWNSLEGPAFRLFPELKEVR 217
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 32 LEMGQLWNQPGPDGNIFCGMLNP 54
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 36 LEMGQLWNQPGPDGNIFCGMLNP 58
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 34 LEMGQLWNQPGPDGNIFCGMLNP 56
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 34 LEMGQLWNQPGPDGNIFCGMLNP 56
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 34 LEMGQLWNQPGPDGNIFCGMLNP 56
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 34 LEMGQLWNQPGPDGNIFCGMLNP 56
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 218 DGWTEIEMGDFFNENGDDGTVVCRL---CEPGSVQK 250
+G T + +G F + DGT++C L +PGSV K
Sbjct: 27 EGLTGLSIGPDFQKGLKDGTILCTLMNKLQPGSVPK 62
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 34 LEMGQLWNQPGPDGNIFCGMLNP 56
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 34 LEMGQLWNQPGPDGNIFCGMLNP 56
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 223 IEMGDFFNENGDDGTVVCRLCEP 245
+EMG +N+ G DG + C + P
Sbjct: 34 LEMGQLWNQPGPDGNIFCGMLNP 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,800,585
Number of Sequences: 62578
Number of extensions: 310055
Number of successful extensions: 532
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 13
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)