Query 024543
Match_columns 266
No_of_seqs 170 out of 351
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 5.3E-66 1.1E-70 436.3 20.8 152 102-263 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.6 2.3E-08 4.9E-13 67.8 3.2 44 5-48 2-45 (47)
3 smart00256 FBOX A Receptor for 98.3 5.1E-07 1.1E-11 58.3 3.2 40 7-46 1-40 (41)
4 PF00646 F-box: F-box domain; 98.3 2.5E-07 5.5E-12 62.4 1.5 44 4-47 3-46 (48)
5 PF06881 Elongin_A: RNA polyme 91.4 0.15 3.2E-06 40.6 2.4 71 4-83 4-74 (109)
6 KOG2997 F-box protein FBX9 [Ge 88.0 0.2 4.3E-06 47.5 0.7 81 5-90 108-194 (366)
7 PF02018 CBM_4_9: Carbohydrate 82.2 21 0.00045 27.5 10.0 68 156-242 57-124 (131)
8 PLN03215 ascorbic acid mannose 81.1 1.3 2.8E-05 43.0 2.8 37 5-41 5-42 (373)
9 KOG4408 Putative Mg2+ and Co2+ 80.5 0.51 1.1E-05 45.1 -0.1 49 4-52 8-56 (386)
10 KOG0274 Cdc4 and related F-box 79.8 0.73 1.6E-05 46.6 0.8 52 2-53 106-157 (537)
11 KOG2120 SCF ubiquitin ligase, 67.0 4.5 9.7E-05 38.7 2.6 42 5-46 99-140 (419)
12 KOG3926 F-box proteins [Amino 63.4 3.8 8.2E-05 38.3 1.3 49 4-52 202-251 (332)
13 KOG0281 Beta-TrCP (transducin 43.9 13 0.00029 36.0 1.6 44 2-45 73-120 (499)
14 PF13013 F-box-like_2: F-box-l 38.1 25 0.00054 28.2 2.1 37 4-40 22-58 (109)
15 KOG4114 Cytochrome c oxidase a 31.3 20 0.00043 26.7 0.5 16 5-20 39-54 (73)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=5.3e-66 Score=436.26 Aligned_cols=152 Identities=50% Similarity=0.972 Sum_probs=143.7
Q ss_pred CCeeEEeeccceeeeeCCCCCceeEeecCCcccccceEEeeeeEEEEEEEEeccccCCCCeEEEEEEEEEcCCcCCCCCc
Q 024543 102 GKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDAR 181 (266)
Q Consensus 102 G~kCymLsAR~L~ItWgd~~~YW~W~~~~~SrF~EVAeL~~VcWLeI~G~i~~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~ 181 (266)
|++|||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CEEEEEEEcCCccc-eeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCCCccEEEEEEEEe-cCcccccEEEEEEE
Q 024543 182 PIEFDVYFEGSNNH-KRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEP-GSVQKRGIITQGIE 259 (266)
Q Consensus 182 pv~~~v~~~g~~~~-~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~~ev~fsl~e~-~~~wK~GLiv~GIe 259 (266)
||+++|+++++... +.+.+++ |++|+|||||||+|||+++++++++|+|+|+|+ +++||+||||+|||
T Consensus 81 pv~~~v~~~~~~~~~~~~~~~~----------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~Gie 150 (154)
T PF14299_consen 81 PVEFSVKVPDGEKYEQERKVCL----------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIE 150 (154)
T ss_pred CEEEEEEeCCCccccceeeEEc----------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEE
Confidence 99999999876642 3456665 678899999999999999988999999999999 89999999999999
Q ss_pred EEec
Q 024543 260 LRPK 263 (266)
Q Consensus 260 IRPk 263 (266)
||||
T Consensus 151 IRPK 154 (154)
T PF14299_consen 151 IRPK 154 (154)
T ss_pred EecC
Confidence 9998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.64 E-value=2.3e-08 Score=67.79 Aligned_cols=44 Identities=34% Similarity=0.647 Sum_probs=39.6
Q ss_pred cccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCC
Q 024543 5 FVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFL 48 (266)
Q Consensus 5 ~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~fl 48 (266)
.+||++.+..|+++++|.|.+++++||+.|+.++.++.+|+++.
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 57999999999999999999999999999999999999998764
No 3
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.32 E-value=5.1e-07 Score=58.33 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=38.6
Q ss_pred cchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhcc
Q 024543 7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEK 46 (266)
Q Consensus 7 Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~ 46 (266)
||++++..|+++++|.|.+++++||+.|+.+.+++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.30 E-value=2.5e-07 Score=62.39 Aligned_cols=44 Identities=34% Similarity=0.555 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccC
Q 024543 4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKF 47 (266)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~f 47 (266)
..+||++++..|++++++.|.++++.||+.|+.+++++..|.++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 35899999999999999999999999999999999999999765
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=91.39 E-value=0.15 Score=40.60 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=56.4
Q ss_pred ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcchhhccccCcccccccccCCCCHHHHHhhhcc
Q 024543 4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYLCH 83 (266)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy~~i~~~~~~~~~~~~~~~~~skKely~~L~~ 83 (266)
+.++|-+.|.-||...+|....++-.-|+-+ +-++|.+|.+|+=.||..-..... | .+.-+-+++|.++.+
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~---~----~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK---P----KEPESWRELYEKLKK 74 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc---c----cccchHHHHHHHHHH
Confidence 4689999999999999999999999999765 567999999999999975222111 2 234588999998864
No 6
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=87.97 E-value=0.2 Score=47.54 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=56.0
Q ss_pred cccchHHHHHHHhc-----CChhhHHHhhhcChhhHhhhccchhhccCCCCcchhhccccCccccccc-ccCCCCHHHHH
Q 024543 5 FVLPAQCISYIISL-----TTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSL-MITSLSKKDLY 78 (266)
Q Consensus 5 ~~Lpe~cia~ils~-----t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy~~i~~~~~~~~~~~~-~~~~~skKely 78 (266)
..||++.+-.|+.. ++-++.-++|+||+.|+-+|..|.+|+.+|=.-|+.-+-... +... ..-..|-+++|
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln---~~~~~sky~~SWR~Mf 184 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLN---PKILQSKYYTSWREMF 184 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccc---hhhhhhHHHhHHHHHH
Confidence 67999998887764 555999999999999999999999999998866653322211 1000 01134677888
Q ss_pred hhhccCCeeecC
Q 024543 79 FYLCHNPILINN 90 (266)
Q Consensus 79 ~~L~~~pvlld~ 90 (266)
+.=. -|.+|+
T Consensus 185 l~Rp--RvrFdG 194 (366)
T KOG2997|consen 185 LERP--RVRFDG 194 (366)
T ss_pred hhCc--ceeecc
Confidence 7622 366665
No 7
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=82.23 E-value=21 Score=27.48 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=42.3
Q ss_pred ccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCCccceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCCCc
Q 024543 156 ILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDD 235 (266)
Q Consensus 156 ~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~~~~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~ 235 (266)
.|-||.+|.+.|-+|.... .++.+.+...++.. ......- ...-.+.|.+++ ++|... .+.
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~W~~~s-~~ft~~-~~~ 117 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDEDGSP-YNWYTGQ----------TVTITGEWTKYS-GTFTAP-SDD 117 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEESSTTT-EEEEEEE----------EEEETSSEEEEE-EEEEEE-SSC
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEEcCCCC-cEEEEEE----------EEECCCCcEEEE-EEEEEC-CCC
Confidence 3669999999999999874 56677776655521 1111110 011147899999 589887 444
Q ss_pred cEEEEEE
Q 024543 236 GTVVCRL 242 (266)
Q Consensus 236 ~ev~fsl 242 (266)
..+.|.+
T Consensus 118 ~~~~l~~ 124 (131)
T PF02018_consen 118 DTVRLYF 124 (131)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 5666654
No 8
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=81.08 E-value=1.3 Score=42.95 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=34.2
Q ss_pred cccchHHHHHHHhcC-ChhhHHHhhhcChhhHhhhccc
Q 024543 5 FVLPAQCISYIISLT-TPRDASRLSLACPAFKSTADSD 41 (266)
Q Consensus 5 ~~Lpe~cia~ils~t-~P~dacr~a~vs~~fr~aa~sD 41 (266)
.+||++.+..|..++ +..|.-|+++||++.|+|+...
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 479999999999998 7999999999999999998863
No 9
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=80.47 E-value=0.51 Score=45.07 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=44.7
Q ss_pred ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcc
Q 024543 4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDY 52 (266)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy 52 (266)
++.+|.+-+..+++++.++++.+.|+||+.+...++-+..|++++-.++
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 4678899999999999999999999999999999999999999985443
No 10
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=79.78 E-value=0.73 Score=46.58 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=45.7
Q ss_pred ccccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcch
Q 024543 2 DITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYK 53 (266)
Q Consensus 2 ~~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy~ 53 (266)
|.+-.||-+-.-.|++++++++.|+++.||+.|+.-++.|.+|.+.+.....
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 4556789999999999999999999999999999999999999877665443
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=66.96 E-value=4.5 Score=38.73 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=40.1
Q ss_pred cccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhcc
Q 024543 5 FVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEK 46 (266)
Q Consensus 5 ~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~ 46 (266)
+.||++.+-.|+|.+--.|.-++|.|++.|...|....+|..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 689999999999999999999999999999999999999954
No 12
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=63.42 E-value=3.8 Score=38.33 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=43.2
Q ss_pred ccccchHHHHHHHhcCC-hhhHHHhhhcChhhHhhhccchhhccCCCCcc
Q 024543 4 TFVLPAQCISYIISLTT-PRDASRLSLACPAFKSTADSDSVWEKFLPSDY 52 (266)
Q Consensus 4 ~~~Lpe~cia~ils~t~-P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy 52 (266)
+.|||++|+-.||-+++ -+|.--+|.|-.++.-.++.+-+|.+.+--.|
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF 251 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHF 251 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 35899999999999765 89999999999999999999999998776544
No 13
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=43.92 E-value=13 Score=36.02 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=37.9
Q ss_pred ccccccc----hHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhc
Q 024543 2 DITFVLP----AQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWE 45 (266)
Q Consensus 2 ~~~~~Lp----e~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~ 45 (266)
|.++.|| +.....|||+++..+.|.+-.||+..+.+-+.--+|.
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 5678899 8888999999999999999999999988876655553
No 14
>PF13013 F-box-like_2: F-box-like domain
Probab=38.06 E-value=25 Score=28.25 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=33.7
Q ss_pred ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhcc
Q 024543 4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADS 40 (266)
Q Consensus 4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~s 40 (266)
+.|||++.+..|+.+-++.+...+...++++|.+.+.
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999988554
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=31.33 E-value=20 Score=26.70 Aligned_cols=16 Identities=19% Similarity=0.494 Sum_probs=13.8
Q ss_pred cccchHHHHHHHhcCC
Q 024543 5 FVLPAQCISYIISLTT 20 (266)
Q Consensus 5 ~~Lpe~cia~ils~t~ 20 (266)
.+|||+|++.+=.|++
T Consensus 39 ~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 39 KDVPEECIALMKAFLD 54 (73)
T ss_pred ccCcHHHHHHHHHHHH
Confidence 3699999999988875
Done!